AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1091000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1091000 MtrunA17_Chr7g0214191 98.016 252 5 0 1 252 17 268 0.0 496
Msa1091000 MtrunA17_Chr7g0214181 79.832 238 40 3 1 235 17 249 4.43e-125 355
Msa1091000 MtrunA17_Chr5g0428281 63.673 245 83 2 1 245 18 256 1.20e-104 304
Msa1091000 MtrunA17_Chr8g0386011 55.660 212 90 2 1 208 17 228 4.48e-79 238
Msa1091000 MtrunA17_Chr3g0131951 48.560 243 119 3 1 242 79 316 1.24e-76 236
Msa1091000 MtrunA17_Chr8g0386001 47.131 244 105 3 1 243 17 237 1.56e-75 230
Msa1091000 MtrunA17_Chr7g0215601 55.446 202 90 0 1 202 18 219 4.60e-73 223
Msa1091000 MtrunA17_Chr5g0444031 53.030 198 93 0 2 199 38 235 4.97e-72 221
Msa1091000 MtrunA17_Chr3g0131961 47.177 248 112 4 1 247 18 247 5.88e-71 218
Msa1091000 MtrunA17_Chr2g0278491 48.035 229 90 5 40 243 1 225 9.36e-68 209
Msa1091000 MtrunA17_Chr2g0295681 42.788 208 119 0 1 208 13 220 5.33e-51 166
Msa1091000 MtrunA17_Chr3g0125861 35.983 239 144 4 1 237 13 244 1.25e-42 145
Msa1091000 MtrunA17_Chr1g0159431 37.500 240 140 4 1 238 13 244 5.83e-42 143
Msa1091000 MtrunA17_Chr6g0450941 37.156 218 127 6 1 211 89 303 6.35e-39 137
Msa1091000 MtrunA17_Chr8g0359261 37.788 217 125 3 1 215 22 230 7.82e-39 135
Msa1091000 MtrunA17_Chr3g0119951 34.818 247 151 5 1 240 16 259 6.29e-38 133
Msa1091000 MtrunA17_Chr3g0119991 34.440 241 148 5 7 240 1 238 2.38e-36 129
Msa1091000 MtrunA17_Chr1g0158931 33.603 247 149 5 1 241 14 251 1.55e-35 127
Msa1091000 MtrunA17_Chr2g0314571 37.788 217 123 6 1 212 22 231 1.82e-35 126
Msa1091000 MtrunA17_Chr8g0388621 33.333 237 146 4 1 234 18 245 3.89e-35 125
Msa1091000 MtrunA17_Chr6g0450951 38.095 189 108 5 14 196 6 191 1.02e-32 119
Msa1091000 MtrunA17_Chr3g0126411 30.672 238 154 5 1 229 14 249 1.69e-32 119
Msa1091000 MtrunA17_Chr3g0126421 30.126 239 154 5 1 229 14 249 1.71e-32 119
Msa1091000 MtrunA17_Chr6g0450931 33.990 203 127 5 14 211 6 206 8.15e-31 113
Msa1091000 MtrunA17_Chr4g0059191 31.220 205 135 2 9 211 1 201 4.70e-28 106
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1091000 AT5G13170.1 63.454 249 86 3 1 246 19 265 2.84e-106 309
Msa1091000 AT3G48740.1 50.000 262 120 3 1 251 19 280 1.09e-86 259
Msa1091000 AT5G23660.1 57.466 221 94 0 1 221 19 239 2.58e-86 258
Msa1091000 AT5G50790.1 48.120 266 117 2 1 245 17 282 3.08e-85 256
Msa1091000 AT5G50800.1 50.980 255 116 2 1 246 17 271 1.11e-77 237
Msa1091000 AT4G25010.1 48.864 264 118 4 1 247 17 280 5.64e-75 229
Msa1091000 AT2G39060.1 46.667 240 123 1 1 240 17 251 2.77e-69 214
Msa1091000 AT3G16690.1 39.171 217 129 2 1 215 13 228 3.72e-51 167
Msa1091000 AT3G16690.3 39.171 217 129 2 1 215 48 263 7.92e-51 167
Msa1091000 AT4G15920.1 39.738 229 126 3 1 217 13 241 9.19e-51 166
Msa1091000 AT1G21460.1 38.211 246 137 4 1 243 13 246 1.02e-46 156
Msa1091000 AT4G10850.1 34.167 240 151 4 1 233 18 257 1.48e-38 135
Msa1091000 AT5G53190.1 32.296 257 143 8 1 241 14 255 4.64e-34 124
Msa1091000 AT5G62850.1 34.101 217 132 5 1 209 16 229 5.05e-34 123
Msa1091000 AT5G40260.1 36.916 214 124 6 1 208 16 224 5.77e-34 123
Msa1091000 AT1G21460.2 38.947 190 113 2 1 188 13 201 1.97e-33 120
Msa1091000 AT3G14770.1 36.486 222 119 8 1 212 22 231 3.98e-32 118
Msa1091000 AT1G66770.1 32.243 214 138 3 1 209 18 229 1.18e-31 117
Msa1091000 AT5G40260.2 38.068 176 103 4 1 171 16 190 2.82e-30 112
Msa1091000 AT5G62850.2 34.884 172 104 4 1 167 16 184 1.06e-26 103
Msa1091000 AT3G28007.1 31.557 244 152 5 1 241 16 247 2.44e-26 103
Msa1091000 AT3G16690.2 34.752 141 89 2 1 139 13 152 6.32e-25 98.2

Find 59 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTTCGTTCTTGGTGTTCT+TGG 0.169280 7_3:-6097130 Msa1091000:CDS
CACACATCCAAATGAGTTTA+TGG 0.188728 7_3:+6096878 None:intergenic
CCACTTCGTGTCCAAGTTCT+TGG 0.244317 7_3:-6096602 Msa1091000:CDS
TCGATTTCTTCTTGTATATA+CGG 0.244759 7_3:+6097000 None:intergenic
CTCATTACCATAAACTCATT+TGG 0.319248 7_3:-6096885 Msa1091000:CDS
AGGTAACGTCATTTCGTTCT+TGG 0.323739 7_3:-6097139 None:intergenic
CTTAACTTTCAAGTTACTTT+CGG 0.328483 7_3:-6096684 Msa1091000:CDS
AATGTGTTGGGTTTCGTATT+GGG 0.328786 7_3:-6096049 Msa1091000:CDS
CTTTGTTCAGCTCCATGCTT+TGG 0.359151 7_3:-6096944 Msa1091000:CDS
AATACGAAACCCAACACATT+TGG 0.368529 7_3:+6096052 None:intergenic
AAATGTGTTGGGTTTCGTAT+TGG 0.380441 7_3:-6096050 Msa1091000:CDS
CACAAACCCATCCAAGAACT+TGG 0.408159 7_3:+6096591 None:intergenic
ATTTAAACTCCAGAGCCAAT+AGG 0.432197 7_3:+6095845 None:intergenic
TTCGTGTCCAAGTTCTTGGA+TGG 0.434485 7_3:-6096598 Msa1091000:CDS
ATACGAAACCCAACACATTT+GGG 0.439248 7_3:+6096053 None:intergenic
TGCTGCTGTATGCAATCTAT+AGG 0.452278 7_3:-6096015 Msa1091000:CDS
AATAATACCCTTGCATCTCT+TGG 0.455895 7_3:+6096816 None:intergenic
GTTCAAAGTGAGGAACCTAT+TGG 0.474459 7_3:-6095860 Msa1091000:CDS
TATTGTTATAGAGACCCAAT+TGG 0.489238 7_3:-6095933 Msa1091000:CDS
AGTGAGGAACCTATTGGCTC+TGG 0.490260 7_3:-6095854 Msa1091000:CDS
GTACATACCACAATGCTTAG+TGG 0.491986 7_3:+6096539 None:intergenic
GCCACAATGTGGTTTGGCTA+CGG 0.514248 7_3:-6096351 Msa1091000:CDS
TTGAGTGCCACAATGTGGTT+TGG 0.514750 7_3:-6096357 Msa1091000:CDS
TCGTGTCCAAGTTCTTGGAT+GGG 0.519498 7_3:-6096597 Msa1091000:CDS
CTGAACAAAGCTACTAGGTA+AGG 0.520832 7_3:+6096957 None:intergenic
TGGAGCTGAACAAAGCTACT+AGG 0.521833 7_3:+6096952 None:intergenic
CTGCAAAGACACTAACACTA+AGG 0.526938 7_3:+6096564 None:intergenic
GTGCAGCTCCCAAATGTGTT+GGG 0.530668 7_3:-6096061 Msa1091000:intron
GAACAAGGGTGATGATAATG+AGG 0.540496 7_3:-6095888 Msa1091000:CDS
ATGCAATCTATAGGAATGGT+GGG 0.547366 7_3:-6096006 Msa1091000:CDS
CAAATGAGTTTATGGTAATG+AGG 0.551806 7_3:+6096886 None:intergenic
CATAAACTCATTTGGATGTG+TGG 0.553344 7_3:-6096877 Msa1091000:CDS
GTTACTTTCGGCAATGAACG+TGG 0.564481 7_3:-6096672 Msa1091000:CDS
TACAAGAAGAAATCGACAGA+GGG 0.564739 7_3:-6096993 Msa1091000:CDS
GACACGAAGTGGACCATGCA+CGG 0.579340 7_3:+6096613 None:intergenic
TGGCTACGGTCTCTTCCTCA+AGG 0.581206 7_3:-6096337 Msa1091000:CDS
TGTGCAGCTCCCAAATGTGT+TGG 0.581637 7_3:-6096062 Msa1091000:intron
GATGTACAATATGATGTAGA+TGG 0.583280 7_3:+6096848 None:intergenic
GTCACTAACTATGCCGTGCA+TGG 0.586420 7_3:-6096626 Msa1091000:CDS
CCAAGAACTTGGACACGAAG+TGG 0.588617 7_3:+6096602 None:intergenic
CGGCATAGTTAGTGACTATG+AGG 0.591246 7_3:+6096633 None:intergenic
GACTATGAGGATCAAAGCAA+AGG 0.596059 7_3:+6096646 None:intergenic
CTGTATGCAATCTATAGGAA+TGG 0.607405 7_3:-6096010 Msa1091000:CDS
CTATGCACCAAGAGATGCAA+GGG 0.607841 7_3:-6096823 Msa1091000:intron
TGCATAGTACAACCAAAGCA+TGG 0.611574 7_3:+6096932 None:intergenic
TATGCAATCTATAGGAATGG+TGG 0.615800 7_3:-6096007 Msa1091000:CDS
CAGCAATGCATATGTCCTTG+AGG 0.616655 7_3:+6096322 None:intergenic
AGAGTGAATGACAAATTGAA+AGG 0.622293 7_3:+6096384 None:intergenic
TACTTTCGGCAATGAACGTG+GGG 0.627256 7_3:-6096670 Msa1091000:CDS
TTACTTTCGGCAATGAACGT+GGG 0.632501 7_3:-6096671 Msa1091000:CDS
TGCAAAGACACTAACACTAA+GGG 0.634955 7_3:+6096565 None:intergenic
TGCAATCTATAGGAATGGTG+GGG 0.637303 7_3:-6096005 Msa1091000:CDS
TGCAGCACCACTAAGCATTG+TGG 0.637500 7_3:-6096546 Msa1091000:intron
TGAACAAGAAAAGAAGAACA+AGG 0.638374 7_3:-6095903 Msa1091000:CDS
GAACAAGAAAAGAAGAACAA+GGG 0.658330 7_3:-6095902 Msa1091000:CDS
TCTATGCACCAAGAGATGCA+AGG 0.675820 7_3:-6096824 Msa1091000:CDS
TCACATTGAGTGCCACAATG+TGG 0.691357 7_3:-6096362 Msa1091000:CDS
ATACAAGAAGAAATCGACAG+AGG 0.715649 7_3:-6096994 Msa1091000:CDS
ACCGTAGCCAAACCACATTG+TGG 0.726020 7_3:+6096350 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAAATAAATACTTACAT+TGG + chr7_3:6095883-6095902 None:intergenic 10.0%
!! CATTCAATAATAAATATTTA+AGG + chr7_3:6096276-6096295 None:intergenic 10.0%
!! TTATATATATTAATTGAGTA+AGG + chr7_3:6096483-6096502 None:intergenic 10.0%
!! AAAAGAAAAAATAAAATTAG+TGG - chr7_3:6096707-6096726 Msa1091000:intron 10.0%
!! ATTTAAATAAATACTTACAT+TGG + chr7_3:6095883-6095902 None:intergenic 10.0%
!! CATTCAATAATAAATATTTA+AGG + chr7_3:6096276-6096295 None:intergenic 10.0%
!! TTATATATATTAATTGAGTA+AGG + chr7_3:6096483-6096502 None:intergenic 10.0%
!! AAAAGAAAAAATAAAATTAG+TGG - chr7_3:6096707-6096726 Msa1091000:intron 10.0%
!! AGATATTAATGTTCAATTAT+TGG + chr7_3:6096224-6096243 None:intergenic 15.0%
!!! TTTTCTTGAAATTTATATGT+AGG - chr7_3:6096543-6096562 Msa1091000:intron 15.0%
!! GATTTCATCAAAAAATAATT+AGG + chr7_3:6096832-6096851 None:intergenic 15.0%
!! AGATATTAATGTTCAATTAT+TGG + chr7_3:6096224-6096243 None:intergenic 15.0%
!!! TTTTCTTGAAATTTATATGT+AGG - chr7_3:6096543-6096562 Msa1091000:intron 15.0%
!! GATTTCATCAAAAAATAATT+AGG + chr7_3:6096832-6096851 None:intergenic 15.0%
!! TTAATGTTCAATTATTGGAT+TGG + chr7_3:6096219-6096238 None:intergenic 20.0%
!!! AGTTTGATTTATGAACTTAA+TGG - chr7_3:6096511-6096530 Msa1091000:intron 20.0%
!! AAAACAATCAAATTATGACA+AGG + chr7_3:6096756-6096775 None:intergenic 20.0%
!!! TTGTTCAATTTTTTCCAATT+GGG + chr7_3:6097069-6097088 None:intergenic 20.0%
!! TTAATGTTCAATTATTGGAT+TGG + chr7_3:6096219-6096238 None:intergenic 20.0%
!!! AGTTTGATTTATGAACTTAA+TGG - chr7_3:6096511-6096530 Msa1091000:intron 20.0%
!! AAAACAATCAAATTATGACA+AGG + chr7_3:6096756-6096775 None:intergenic 20.0%
!!! TTGTTCAATTTTTTCCAATT+GGG + chr7_3:6097069-6097088 None:intergenic 20.0%
! TCGATTTCTTCTTGTATATA+CGG + chr7_3:6095988-6096007 None:intergenic 25.0%
!!! CTTAACTTTCAAGTTACTTT+CGG - chr7_3:6096301-6096320 Msa1091000:intron 25.0%
!! TCTATAACAATACTTTTGAG+TGG + chr7_3:6097044-6097063 None:intergenic 25.0%
!!! CTTGTTCAATTTTTTCCAAT+TGG + chr7_3:6097070-6097089 None:intergenic 25.0%
! TCGATTTCTTCTTGTATATA+CGG + chr7_3:6095988-6096007 None:intergenic 25.0%
!!! CTTAACTTTCAAGTTACTTT+CGG - chr7_3:6096301-6096320 Msa1091000:intron 25.0%
!! TCTATAACAATACTTTTGAG+TGG + chr7_3:6097044-6097063 None:intergenic 25.0%
!!! CTTGTTCAATTTTTTCCAAT+TGG + chr7_3:6097070-6097089 None:intergenic 25.0%
! CAAATGAGTTTATGGTAATG+AGG + chr7_3:6096102-6096121 None:intergenic 30.0%
CTCATTACCATAAACTCATT+TGG - chr7_3:6096100-6096119 Msa1091000:intron 30.0%
GATGTACAATATGATGTAGA+TGG + chr7_3:6096140-6096159 None:intergenic 30.0%
AGAGTGAATGACAAATTGAA+AGG + chr7_3:6096604-6096623 None:intergenic 30.0%
TATTGTTATAGAGACCCAAT+TGG - chr7_3:6097052-6097071 Msa1091000:intron 30.0%
TGAACAAGAAAAGAAGAACA+AGG - chr7_3:6097082-6097101 Msa1091000:intron 30.0%
GAACAAGAAAAGAAGAACAA+GGG - chr7_3:6097083-6097102 Msa1091000:intron 30.0%
! CAAATGAGTTTATGGTAATG+AGG + chr7_3:6096102-6096121 None:intergenic 30.0%
CTCATTACCATAAACTCATT+TGG - chr7_3:6096100-6096119 Msa1091000:intron 30.0%
GATGTACAATATGATGTAGA+TGG + chr7_3:6096140-6096159 None:intergenic 30.0%
AGAGTGAATGACAAATTGAA+AGG + chr7_3:6096604-6096623 None:intergenic 30.0%
TATTGTTATAGAGACCCAAT+TGG - chr7_3:6097052-6097071 Msa1091000:intron 30.0%
TGAACAAGAAAAGAAGAACA+AGG - chr7_3:6097082-6097101 Msa1091000:intron 30.0%
GAACAAGAAAAGAAGAACAA+GGG - chr7_3:6097083-6097102 Msa1091000:intron 30.0%
ATACAAGAAGAAATCGACAG+AGG - chr7_3:6095991-6096010 Msa1091000:CDS 35.0%
TACAAGAAGAAATCGACAGA+GGG - chr7_3:6095992-6096011 Msa1091000:CDS 35.0%
CACACATCCAAATGAGTTTA+TGG + chr7_3:6096110-6096129 None:intergenic 35.0%
CATAAACTCATTTGGATGTG+TGG - chr7_3:6096108-6096127 Msa1091000:intron 35.0%
AATAATACCCTTGCATCTCT+TGG + chr7_3:6096172-6096191 None:intergenic 35.0%
TGCAAAGACACTAACACTAA+GGG + chr7_3:6096423-6096442 None:intergenic 35.0%
ATACGAAACCCAACACATTT+GGG + chr7_3:6096935-6096954 None:intergenic 35.0%
AATACGAAACCCAACACATT+TGG + chr7_3:6096936-6096955 None:intergenic 35.0%
AAATGTGTTGGGTTTCGTAT+TGG - chr7_3:6096935-6096954 Msa1091000:CDS 35.0%
AATGTGTTGGGTTTCGTATT+GGG - chr7_3:6096936-6096955 Msa1091000:CDS 35.0%
CTGTATGCAATCTATAGGAA+TGG - chr7_3:6096975-6096994 Msa1091000:CDS 35.0%
TATGCAATCTATAGGAATGG+TGG - chr7_3:6096978-6096997 Msa1091000:CDS 35.0%
ATGCAATCTATAGGAATGGT+GGG - chr7_3:6096979-6096998 Msa1091000:CDS 35.0%
TGGGGAAAAAGCTATGAAAA+AGG - chr7_3:6096998-6097017 Msa1091000:CDS 35.0%
!! ATACTTTTGAGTGGCTCAAT+TGG + chr7_3:6097035-6097054 None:intergenic 35.0%
TGAGGAAAAAGTTCAAAGTG+AGG - chr7_3:6097115-6097134 Msa1091000:intron 35.0%
ATACAAGAAGAAATCGACAG+AGG - chr7_3:6095991-6096010 Msa1091000:CDS 35.0%
TACAAGAAGAAATCGACAGA+GGG - chr7_3:6095992-6096011 Msa1091000:CDS 35.0%
CACACATCCAAATGAGTTTA+TGG + chr7_3:6096110-6096129 None:intergenic 35.0%
CATAAACTCATTTGGATGTG+TGG - chr7_3:6096108-6096127 Msa1091000:intron 35.0%
AATAATACCCTTGCATCTCT+TGG + chr7_3:6096172-6096191 None:intergenic 35.0%
TGCAAAGACACTAACACTAA+GGG + chr7_3:6096423-6096442 None:intergenic 35.0%
ATACGAAACCCAACACATTT+GGG + chr7_3:6096935-6096954 None:intergenic 35.0%
AATACGAAACCCAACACATT+TGG + chr7_3:6096936-6096955 None:intergenic 35.0%
AAATGTGTTGGGTTTCGTAT+TGG - chr7_3:6096935-6096954 Msa1091000:CDS 35.0%
AATGTGTTGGGTTTCGTATT+GGG - chr7_3:6096936-6096955 Msa1091000:CDS 35.0%
CTGTATGCAATCTATAGGAA+TGG - chr7_3:6096975-6096994 Msa1091000:CDS 35.0%
TATGCAATCTATAGGAATGG+TGG - chr7_3:6096978-6096997 Msa1091000:CDS 35.0%
ATGCAATCTATAGGAATGGT+GGG - chr7_3:6096979-6096998 Msa1091000:CDS 35.0%
TGGGGAAAAAGCTATGAAAA+AGG - chr7_3:6096998-6097017 Msa1091000:CDS 35.0%
!! ATACTTTTGAGTGGCTCAAT+TGG + chr7_3:6097035-6097054 None:intergenic 35.0%
TGAGGAAAAAGTTCAAAGTG+AGG - chr7_3:6097115-6097134 Msa1091000:intron 35.0%
!! CATTTCGTTCTTGGTGTTCT+TGG - chr7_3:6095855-6095874 Msa1091000:CDS 40.0%
CTGAACAAAGCTACTAGGTA+AGG + chr7_3:6096031-6096050 None:intergenic 40.0%
TGCATAGTACAACCAAAGCA+TGG + chr7_3:6096056-6096075 None:intergenic 40.0%
TTACTTTCGGCAATGAACGT+GGG - chr7_3:6096314-6096333 Msa1091000:intron 40.0%
GACTATGAGGATCAAAGCAA+AGG + chr7_3:6096342-6096361 None:intergenic 40.0%
CTGCAAAGACACTAACACTA+AGG + chr7_3:6096424-6096443 None:intergenic 40.0%
GTACATACCACAATGCTTAG+TGG + chr7_3:6096449-6096468 None:intergenic 40.0%
TGCTGCTGTATGCAATCTAT+AGG - chr7_3:6096970-6096989 Msa1091000:CDS 40.0%
TGCAATCTATAGGAATGGTG+GGG - chr7_3:6096980-6096999 Msa1091000:CDS 40.0%
! GAACAAGGGTGATGATAATG+AGG - chr7_3:6097097-6097116 Msa1091000:intron 40.0%
GTTCAAAGTGAGGAACCTAT+TGG - chr7_3:6097125-6097144 Msa1091000:CDS 40.0%
!! CATTTCGTTCTTGGTGTTCT+TGG - chr7_3:6095855-6095874 Msa1091000:CDS 40.0%
CTGAACAAAGCTACTAGGTA+AGG + chr7_3:6096031-6096050 None:intergenic 40.0%
TGCATAGTACAACCAAAGCA+TGG + chr7_3:6096056-6096075 None:intergenic 40.0%
TTACTTTCGGCAATGAACGT+GGG - chr7_3:6096314-6096333 Msa1091000:intron 40.0%
GACTATGAGGATCAAAGCAA+AGG + chr7_3:6096342-6096361 None:intergenic 40.0%
CTGCAAAGACACTAACACTA+AGG + chr7_3:6096424-6096443 None:intergenic 40.0%
GTACATACCACAATGCTTAG+TGG + chr7_3:6096449-6096468 None:intergenic 40.0%
TGCTGCTGTATGCAATCTAT+AGG - chr7_3:6096970-6096989 Msa1091000:CDS 40.0%
TGCAATCTATAGGAATGGTG+GGG - chr7_3:6096980-6096999 Msa1091000:CDS 40.0%
! GAACAAGGGTGATGATAATG+AGG - chr7_3:6097097-6097116 Msa1091000:intron 40.0%
GTTCAAAGTGAGGAACCTAT+TGG - chr7_3:6097125-6097144 Msa1091000:CDS 40.0%
TGGAGCTGAACAAAGCTACT+AGG + chr7_3:6096036-6096055 None:intergenic 45.0%
CTTTGTTCAGCTCCATGCTT+TGG - chr7_3:6096041-6096060 Msa1091000:CDS 45.0%
TCTATGCACCAAGAGATGCA+AGG - chr7_3:6096161-6096180 Msa1091000:intron 45.0%
CTATGCACCAAGAGATGCAA+GGG - chr7_3:6096162-6096181 Msa1091000:intron 45.0%
! GTTACTTTCGGCAATGAACG+TGG - chr7_3:6096313-6096332 Msa1091000:intron 45.0%
TACTTTCGGCAATGAACGTG+GGG - chr7_3:6096315-6096334 Msa1091000:intron 45.0%
CGGCATAGTTAGTGACTATG+AGG + chr7_3:6096355-6096374 None:intergenic 45.0%
TTCGTGTCCAAGTTCTTGGA+TGG - chr7_3:6096387-6096406 Msa1091000:CDS 45.0%
TCGTGTCCAAGTTCTTGGAT+GGG - chr7_3:6096388-6096407 Msa1091000:CDS 45.0%
CACAAACCCATCCAAGAACT+TGG + chr7_3:6096397-6096416 None:intergenic 45.0%
TCACATTGAGTGCCACAATG+TGG - chr7_3:6096623-6096642 Msa1091000:CDS 45.0%
TTGAGTGCCACAATGTGGTT+TGG - chr7_3:6096628-6096647 Msa1091000:CDS 45.0%
CAGCAATGCATATGTCCTTG+AGG + chr7_3:6096666-6096685 None:intergenic 45.0%
TGGAGCTGAACAAAGCTACT+AGG + chr7_3:6096036-6096055 None:intergenic 45.0%
CTTTGTTCAGCTCCATGCTT+TGG - chr7_3:6096041-6096060 Msa1091000:CDS 45.0%
TCTATGCACCAAGAGATGCA+AGG - chr7_3:6096161-6096180 Msa1091000:intron 45.0%
CTATGCACCAAGAGATGCAA+GGG - chr7_3:6096162-6096181 Msa1091000:intron 45.0%
! GTTACTTTCGGCAATGAACG+TGG - chr7_3:6096313-6096332 Msa1091000:intron 45.0%
TACTTTCGGCAATGAACGTG+GGG - chr7_3:6096315-6096334 Msa1091000:intron 45.0%
CGGCATAGTTAGTGACTATG+AGG + chr7_3:6096355-6096374 None:intergenic 45.0%
TTCGTGTCCAAGTTCTTGGA+TGG - chr7_3:6096387-6096406 Msa1091000:CDS 45.0%
TCGTGTCCAAGTTCTTGGAT+GGG - chr7_3:6096388-6096407 Msa1091000:CDS 45.0%
CACAAACCCATCCAAGAACT+TGG + chr7_3:6096397-6096416 None:intergenic 45.0%
TCACATTGAGTGCCACAATG+TGG - chr7_3:6096623-6096642 Msa1091000:CDS 45.0%
TTGAGTGCCACAATGTGGTT+TGG - chr7_3:6096628-6096647 Msa1091000:CDS 45.0%
CAGCAATGCATATGTCCTTG+AGG + chr7_3:6096666-6096685 None:intergenic 45.0%
GTCACTAACTATGCCGTGCA+TGG - chr7_3:6096359-6096378 Msa1091000:CDS 50.0%
CCAAGAACTTGGACACGAAG+TGG + chr7_3:6096386-6096405 None:intergenic 50.0%
CCACTTCGTGTCCAAGTTCT+TGG - chr7_3:6096383-6096402 Msa1091000:CDS 50.0%
! TGCAGCACCACTAAGCATTG+TGG - chr7_3:6096439-6096458 Msa1091000:intron 50.0%
! GCCACAATGTGGTTTGGCTA+CGG - chr7_3:6096634-6096653 Msa1091000:CDS 50.0%
ACCGTAGCCAAACCACATTG+TGG + chr7_3:6096638-6096657 None:intergenic 50.0%
TGTGCAGCTCCCAAATGTGT+TGG - chr7_3:6096923-6096942 Msa1091000:CDS 50.0%
GTGCAGCTCCCAAATGTGTT+GGG - chr7_3:6096924-6096943 Msa1091000:CDS 50.0%
!! AGTGAGGAACCTATTGGCTC+TGG - chr7_3:6097131-6097150 Msa1091000:CDS 50.0%
GTCACTAACTATGCCGTGCA+TGG - chr7_3:6096359-6096378 Msa1091000:CDS 50.0%
CCAAGAACTTGGACACGAAG+TGG + chr7_3:6096386-6096405 None:intergenic 50.0%
CCACTTCGTGTCCAAGTTCT+TGG - chr7_3:6096383-6096402 Msa1091000:CDS 50.0%
! TGCAGCACCACTAAGCATTG+TGG - chr7_3:6096439-6096458 Msa1091000:intron 50.0%
! GCCACAATGTGGTTTGGCTA+CGG - chr7_3:6096634-6096653 Msa1091000:CDS 50.0%
ACCGTAGCCAAACCACATTG+TGG + chr7_3:6096638-6096657 None:intergenic 50.0%
TGTGCAGCTCCCAAATGTGT+TGG - chr7_3:6096923-6096942 Msa1091000:CDS 50.0%
GTGCAGCTCCCAAATGTGTT+GGG - chr7_3:6096924-6096943 Msa1091000:CDS 50.0%
!! AGTGAGGAACCTATTGGCTC+TGG - chr7_3:6097131-6097150 Msa1091000:CDS 50.0%
GACACGAAGTGGACCATGCA+CGG + chr7_3:6096375-6096394 None:intergenic 55.0%
TGGCTACGGTCTCTTCCTCA+AGG - chr7_3:6096648-6096667 Msa1091000:CDS 55.0%
GACACGAAGTGGACCATGCA+CGG + chr7_3:6096375-6096394 None:intergenic 55.0%
TGGCTACGGTCTCTTCCTCA+AGG - chr7_3:6096648-6096667 Msa1091000:CDS 55.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 6095850 6097157 6095850 ID=Msa1091000;Name=Msa1091000
chr7_3 mRNA 6095850 6097157 6095850 ID=Msa1091000-mRNA-1;Parent=Msa1091000;Name=Msa1091000-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|0.6|5|0|252
chr7_3 exon 6097123 6097157 6097123 ID=Msa1091000-mRNA-1:exon:1880;Parent=Msa1091000-mRNA-1
chr7_3 exon 6096824 6097034 6096824 ID=Msa1091000-mRNA-1:exon:1879;Parent=Msa1091000-mRNA-1
chr7_3 exon 6096547 6096708 6096547 ID=Msa1091000-mRNA-1:exon:1878;Parent=Msa1091000-mRNA-1
chr7_3 exon 6096323 6096442 6096323 ID=Msa1091000-mRNA-1:exon:1877;Parent=Msa1091000-mRNA-1
chr7_3 exon 6095850 6096077 6095850 ID=Msa1091000-mRNA-1:exon:1876;Parent=Msa1091000-mRNA-1
chr7_3 CDS 6097123 6097157 6097123 ID=Msa1091000-mRNA-1:cds;Parent=Msa1091000-mRNA-1
chr7_3 CDS 6096824 6097034 6096824 ID=Msa1091000-mRNA-1:cds;Parent=Msa1091000-mRNA-1
chr7_3 CDS 6096547 6096708 6096547 ID=Msa1091000-mRNA-1:cds;Parent=Msa1091000-mRNA-1
chr7_3 CDS 6096323 6096442 6096323 ID=Msa1091000-mRNA-1:cds;Parent=Msa1091000-mRNA-1
chr7_3 CDS 6095850 6096077 6095850 ID=Msa1091000-mRNA-1:cds;Parent=Msa1091000-mRNA-1
Gene Sequence

>Msa1091000

AACGTCATTTCGTTCTTGGTGTTCTTGGCTCCAATATCAACATTTTACCGTATATACAAGAAGAAATCGACAGAGGGTTTTCAGTCACTGCCTTACCTAGTAGCTTTGTTCAGCTCCATGCTTTGGTTGTACTATGCATTGCTAAAAAAAGATGCTTTTCTCCTCATTACCATAAACTCATTTGGATGTGTGGTAGAGACCATCTACATCATATTGTACATCATCTATGCACCAAGAGATGCAAGGAACTTAACTTTCAAGTTACTTTCGGCAATGAACGTGGGGTCCTTTGCTTTGATCCTCATAGTCACTAACTATGCCGTGCATGGTCCACTTCGTGTCCAAGTTCTTGGATGGGTTTGTGTTTCCCTTAGTGTTAGTGTCTTTGCAGCACCACTAAGCATTGTGGCGCAAGTTGTTCGTACAAAGAGTGTTGAGTTTATGCCTTTCAATTTGTCATTCACTCTCACATTGAGTGCCACAATGTGGTTTGGCTACGGTCTCTTCCTCAAGGACATATGCATTGCTCTCCCAAATGTGTTGGGTTTCGTATTGGGATTACTTCAGATGCTGCTGTATGCAATCTATAGGAATGGTGGGGAAAAAGCTATGAAAAAGGAAAAGAAAGCACCAATTGAGCCACTCAAAAGTATTGTTATAGAGACCCAATTGGAAAAAATTGAACAAGAAAAGAAGAACAAGGGTGATGATAATGAGGAAAAAGTTCAAAGTGAGGAACCTATTGGCTCTGGAGTT

Protein sequence

>Msa1091000

NVISFLVFLAPISTFYRIYKKKSTEGFQSLPYLVALFSSMLWLYYALLKKDAFLLITINSFGCVVETIYIILYIIYAPRDARNLTFKLLSAMNVGSFALILIVTNYAVHGPLRVQVLGWVCVSLSVSVFAAPLSIVAQVVRTKSVEFMPFNLSFTLTLSATMWFGYGLFLKDICIALPNVLGFVLGLLQMLLYAIYRNGGEKAMKKEKKAPIEPLKSIVIETQLEKIEQEKKNKGDDNEEKVQSEEPIGSGV