Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1091000 | XP_013447780.1 | 98.016 | 252 | 5 | 0 | 1 | 252 | 17 | 268 | 9.44e-177 | 496 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1091000 | sp|P93332|NOD3_MEDTR | 96.825 | 252 | 8 | 0 | 1 | 252 | 17 | 268 | 4.04e-177 | 490 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1091000 | A0A072TX72 | 98.016 | 252 | 5 | 0 | 1 | 252 | 17 | 268 | 4.51e-177 | 496 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0024280 | Msa1091000 | 0.826354 | 2.841086e-54 | -8.615850e-47 |
Msa0048950 | Msa1091000 | 0.813652 | 2.297123e-51 | -8.615850e-47 |
Msa0059880 | Msa1091000 | 0.818545 | 1.853245e-52 | -8.615850e-47 |
Msa0074620 | Msa1091000 | 0.802534 | 5.360947e-49 | -8.615850e-47 |
Msa0120050 | Msa1091000 | 0.812134 | 4.939986e-51 | -8.615850e-47 |
Msa0605470 | Msa1091000 | 0.831049 | 2.080643e-55 | -8.615850e-47 |
Msa0623980 | Msa1091000 | 0.822416 | 2.396972e-53 | -8.615850e-47 |
Msa0631700 | Msa1091000 | 0.813317 | 2.721252e-51 | -8.615850e-47 |
Msa0643840 | Msa1091000 | 0.844853 | 5.845081e-59 | -8.615850e-47 |
Msa0645150 | Msa1091000 | 0.820849 | 5.518989e-53 | -8.615850e-47 |
Msa0645370 | Msa1091000 | 0.808761 | 2.642028e-50 | -8.615850e-47 |
Msa0670360 | Msa1091000 | 0.842947 | 1.894348e-58 | -8.615850e-47 |
Msa0678620 | Msa1091000 | 0.812198 | 4.783553e-51 | -8.615850e-47 |
Msa0711240 | Msa1091000 | 0.804171 | 2.455322e-49 | -8.615850e-47 |
Msa0727480 | Msa1091000 | 0.834756 | 2.493662e-56 | -8.615850e-47 |
Msa0768670 | Msa1091000 | 0.860108 | 2.598127e-63 | -8.615850e-47 |
Msa0768720 | Msa1091000 | 0.854579 | 1.120278e-61 | -8.615850e-47 |
Msa0824860 | Msa1091000 | 0.820334 | 7.244912e-53 | -8.615850e-47 |
Msa0841170 | Msa1091000 | 0.811136 | 8.142807e-51 | -8.615850e-47 |
Msa0121470 | Msa1091000 | 0.804952 | 1.686980e-49 | -8.615850e-47 |
Msa0121490 | Msa1091000 | 0.804336 | 2.268654e-49 | -8.615850e-47 |
Msa0143680 | Msa1091000 | 0.849973 | 2.292517e-60 | -8.615850e-47 |
Msa0143710 | Msa1091000 | 0.841264 | 5.281124e-58 | -8.615850e-47 |
Msa0143740 | Msa1091000 | 0.827711 | 1.345207e-54 | -8.615850e-47 |
Msa0143770 | Msa1091000 | 0.822558 | 2.221618e-53 | -8.615850e-47 |
Msa0144010 | Msa1091000 | 0.803640 | 3.165274e-49 | -8.615850e-47 |
Msa0147670 | Msa1091000 | 0.808839 | 2.543124e-50 | -8.615850e-47 |
Msa0150910 | Msa1091000 | 0.813459 | 2.532816e-51 | -8.615850e-47 |
Msa0163340 | Msa1091000 | 0.856572 | 2.937657e-62 | -8.615850e-47 |
Msa0210850 | Msa1091000 | 0.804610 | 1.989270e-49 | -8.615850e-47 |
Msa0374130 | Msa1091000 | 0.810354 | 1.201969e-50 | -8.615850e-47 |
Msa0414480 | Msa1091000 | 0.811709 | 6.114332e-51 | -8.615850e-47 |
Msa0469550 | Msa1091000 | 0.807378 | 5.203958e-50 | -8.615850e-47 |
Msa0985700 | Msa1091000 | 0.836095 | 1.144034e-56 | -8.615850e-47 |
Msa0985710 | Msa1091000 | 0.818218 | 2.198604e-52 | -8.615850e-47 |
Msa0987640 | Msa1091000 | 0.802848 | 4.618045e-49 | -8.615850e-47 |
Msa0993450 | Msa1091000 | 0.818964 | 1.488717e-52 | -8.615850e-47 |
Msa1003110 | Msa1091000 | 0.959953 | 5.174280e-118 | -8.615850e-47 |
Msa1020540 | Msa1091000 | 0.809154 | 2.177488e-50 | -8.615850e-47 |
Msa1021620 | Msa1091000 | 0.887288 | 1.627679e-72 | -8.615850e-47 |
Msa1022580 | Msa1091000 | 0.804810 | 1.806984e-49 | -8.615850e-47 |
Msa1026050 | Msa1091000 | 0.813374 | 2.643165e-51 | -8.615850e-47 |
Msa1036590 | Msa1091000 | 0.807315 | 5.367107e-50 | -8.615850e-47 |
Msa1046210 | Msa1091000 | 0.940128 | 3.956036e-100 | -8.615850e-47 |
Msa1060320 | Msa1091000 | 0.805565 | 1.255201e-49 | -8.615850e-47 |
Msa1061670 | Msa1091000 | 0.835903 | 1.279712e-56 | -8.615850e-47 |
Msa1076830 | Msa1091000 | 0.834406 | 3.052521e-56 | -8.615850e-47 |
Msa1076900 | Msa1091000 | 0.807008 | 6.235118e-50 | -8.615850e-47 |
Msa1091000 | Msa1104960 | 0.800116 | 1.676013e-48 | -8.615850e-47 |
Msa1091000 | Msa1105730 | 0.806443 | 8.207700e-50 | -8.615850e-47 |
Msa1091000 | Msa1106960 | 0.827567 | 1.456758e-54 | -8.615850e-47 |
Msa1091000 | Msa1109880 | 0.834793 | 2.440782e-56 | -8.615850e-47 |
Msa1091000 | Msa1109890 | 0.825922 | 3.598019e-54 | -8.615850e-47 |
Msa1091000 | Msa1133860 | 0.964352 | 3.215605e-123 | -8.615850e-47 |
Msa1091000 | Msa1149020 | 0.876529 | 1.298358e-68 | -8.615850e-47 |
Msa1091000 | Msa1170320 | 0.817604 | 3.025996e-52 | -8.615850e-47 |
Msa1091000 | Msa1233630 | 0.807553 | 4.778923e-50 | -8.615850e-47 |
Msa1091000 | Msa1286420 | 0.814366 | 1.598324e-51 | -8.615850e-47 |
Msa1091000 | Msa1300610 | 0.827373 | 1.621655e-54 | -8.615850e-47 |
Msa1091000 | Msa1323120 | 0.836460 | 9.239033e-57 | -8.615850e-47 |
Msa1091000 | Msa1329740 | 0.810559 | 1.085077e-50 | -8.615850e-47 |
Msa1091000 | Msa1357490 | 0.803737 | 3.021605e-49 | -8.615850e-47 |
Msa1091000 | Msa1357860 | 0.807479 | 4.955487e-50 | -8.615850e-47 |
Msa1091000 | Msa1376070 | 0.837376 | 5.392006e-57 | -8.615850e-47 |
Msa1091000 | Msa1377460 | 0.800407 | 1.462343e-48 | -8.615850e-47 |
Msa1091000 | Msa1377520 | 0.838067 | 3.583637e-57 | -8.615850e-47 |
Msa1091000 | Msa1378400 | 0.800345 | 1.505396e-48 | -8.615850e-47 |
Msa1091000 | Msa1407670 | 0.837171 | 6.083550e-57 | -8.615850e-47 |
Msa1091000 | Msa1409600 | 0.802684 | 4.991896e-49 | -8.615850e-47 |
Msa1091000 | Msa1449770 | 0.838483 | 2.799791e-57 | -8.615850e-47 |
Msa1091000 | Msa1456600 | 0.802737 | 4.868423e-49 | -8.615850e-47 |
Msa1091000 | Msa1459610 | 0.824795 | 6.650301e-54 | -8.615850e-47 |
Msa0278940 | Msa1091000 | 0.815803 | 7.665596e-52 | -8.615850e-47 |
Msa0491770 | Msa1091000 | 0.809792 | 1.588213e-50 | -8.615850e-47 |
Msa0515260 | Msa1091000 | 0.802103 | 6.576228e-49 | -8.615850e-47 |
Msa0531030 | Msa1091000 | 0.801190 | 1.011846e-48 | -8.615850e-47 |
Msa0535570 | Msa1091000 | 0.829415 | 5.214832e-55 | -8.615850e-47 |
Msa0549170 | Msa1091000 | 0.826632 | 2.438881e-54 | -8.615850e-47 |
Msa0549920 | Msa1091000 | 0.829842 | 4.105024e-55 | -8.615850e-47 |
Msa0549930 | Msa1091000 | 0.813475 | 2.512152e-51 | -8.615850e-47 |
Msa0579530 | Msa1091000 | 0.819545 | 1.098016e-52 | -8.615850e-47 |
Msa0591490 | Msa1091000 | 0.814954 | 1.183974e-51 | -8.615850e-47 |
Msa0863840 | Msa1091000 | 0.832743 | 7.942445e-56 | -8.615850e-47 |
Msa0863850 | Msa1091000 | 0.802386 | 5.748904e-49 | -8.615850e-47 |
Msa0864160 | Msa1091000 | 0.807168 | 5.766205e-50 | -8.615850e-47 |
Msa0883640 | Msa1091000 | 0.837618 | 4.674059e-57 | -8.615850e-47 |
Msa0893840 | Msa1091000 | 0.817559 | 3.096566e-52 | -8.615850e-47 |
Msa0902340 | Msa1091000 | 0.803213 | 3.880380e-49 | -8.615850e-47 |
Msa0910830 | Msa1091000 | 0.848560 | 5.669550e-60 | -8.615850e-47 |
Msa0913550 | Msa1091000 | 0.806397 | 8.390314e-50 | -8.615850e-47 |
Msa0951150 | Msa1091000 | 0.802729 | 4.885852e-49 | -8.615850e-47 |
Msa0960090 | Msa1091000 | 0.837829 | 4.126480e-57 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1091000 | MtrunA17_Chr7g0214191 | 98.016 | 252 | 5 | 0 | 1 | 252 | 17 | 268 | 0.0 | 496 |
Msa1091000 | MtrunA17_Chr7g0214181 | 79.832 | 238 | 40 | 3 | 1 | 235 | 17 | 249 | 4.43e-125 | 355 |
Msa1091000 | MtrunA17_Chr5g0428281 | 63.673 | 245 | 83 | 2 | 1 | 245 | 18 | 256 | 1.20e-104 | 304 |
Msa1091000 | MtrunA17_Chr8g0386011 | 55.660 | 212 | 90 | 2 | 1 | 208 | 17 | 228 | 4.48e-79 | 238 |
Msa1091000 | MtrunA17_Chr3g0131951 | 48.560 | 243 | 119 | 3 | 1 | 242 | 79 | 316 | 1.24e-76 | 236 |
Msa1091000 | MtrunA17_Chr8g0386001 | 47.131 | 244 | 105 | 3 | 1 | 243 | 17 | 237 | 1.56e-75 | 230 |
Msa1091000 | MtrunA17_Chr7g0215601 | 55.446 | 202 | 90 | 0 | 1 | 202 | 18 | 219 | 4.60e-73 | 223 |
Msa1091000 | MtrunA17_Chr5g0444031 | 53.030 | 198 | 93 | 0 | 2 | 199 | 38 | 235 | 4.97e-72 | 221 |
Msa1091000 | MtrunA17_Chr3g0131961 | 47.177 | 248 | 112 | 4 | 1 | 247 | 18 | 247 | 5.88e-71 | 218 |
Msa1091000 | MtrunA17_Chr2g0278491 | 48.035 | 229 | 90 | 5 | 40 | 243 | 1 | 225 | 9.36e-68 | 209 |
Msa1091000 | MtrunA17_Chr2g0295681 | 42.788 | 208 | 119 | 0 | 1 | 208 | 13 | 220 | 5.33e-51 | 166 |
Msa1091000 | MtrunA17_Chr3g0125861 | 35.983 | 239 | 144 | 4 | 1 | 237 | 13 | 244 | 1.25e-42 | 145 |
Msa1091000 | MtrunA17_Chr1g0159431 | 37.500 | 240 | 140 | 4 | 1 | 238 | 13 | 244 | 5.83e-42 | 143 |
Msa1091000 | MtrunA17_Chr6g0450941 | 37.156 | 218 | 127 | 6 | 1 | 211 | 89 | 303 | 6.35e-39 | 137 |
Msa1091000 | MtrunA17_Chr8g0359261 | 37.788 | 217 | 125 | 3 | 1 | 215 | 22 | 230 | 7.82e-39 | 135 |
Msa1091000 | MtrunA17_Chr3g0119951 | 34.818 | 247 | 151 | 5 | 1 | 240 | 16 | 259 | 6.29e-38 | 133 |
Msa1091000 | MtrunA17_Chr3g0119991 | 34.440 | 241 | 148 | 5 | 7 | 240 | 1 | 238 | 2.38e-36 | 129 |
Msa1091000 | MtrunA17_Chr1g0158931 | 33.603 | 247 | 149 | 5 | 1 | 241 | 14 | 251 | 1.55e-35 | 127 |
Msa1091000 | MtrunA17_Chr2g0314571 | 37.788 | 217 | 123 | 6 | 1 | 212 | 22 | 231 | 1.82e-35 | 126 |
Msa1091000 | MtrunA17_Chr8g0388621 | 33.333 | 237 | 146 | 4 | 1 | 234 | 18 | 245 | 3.89e-35 | 125 |
Msa1091000 | MtrunA17_Chr6g0450951 | 38.095 | 189 | 108 | 5 | 14 | 196 | 6 | 191 | 1.02e-32 | 119 |
Msa1091000 | MtrunA17_Chr3g0126411 | 30.672 | 238 | 154 | 5 | 1 | 229 | 14 | 249 | 1.69e-32 | 119 |
Msa1091000 | MtrunA17_Chr3g0126421 | 30.126 | 239 | 154 | 5 | 1 | 229 | 14 | 249 | 1.71e-32 | 119 |
Msa1091000 | MtrunA17_Chr6g0450931 | 33.990 | 203 | 127 | 5 | 14 | 211 | 6 | 206 | 8.15e-31 | 113 |
Msa1091000 | MtrunA17_Chr4g0059191 | 31.220 | 205 | 135 | 2 | 9 | 211 | 1 | 201 | 4.70e-28 | 106 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1091000 | AT5G13170.1 | 63.454 | 249 | 86 | 3 | 1 | 246 | 19 | 265 | 2.84e-106 | 309 |
Msa1091000 | AT3G48740.1 | 50.000 | 262 | 120 | 3 | 1 | 251 | 19 | 280 | 1.09e-86 | 259 |
Msa1091000 | AT5G23660.1 | 57.466 | 221 | 94 | 0 | 1 | 221 | 19 | 239 | 2.58e-86 | 258 |
Msa1091000 | AT5G50790.1 | 48.120 | 266 | 117 | 2 | 1 | 245 | 17 | 282 | 3.08e-85 | 256 |
Msa1091000 | AT5G50800.1 | 50.980 | 255 | 116 | 2 | 1 | 246 | 17 | 271 | 1.11e-77 | 237 |
Msa1091000 | AT4G25010.1 | 48.864 | 264 | 118 | 4 | 1 | 247 | 17 | 280 | 5.64e-75 | 229 |
Msa1091000 | AT2G39060.1 | 46.667 | 240 | 123 | 1 | 1 | 240 | 17 | 251 | 2.77e-69 | 214 |
Msa1091000 | AT3G16690.1 | 39.171 | 217 | 129 | 2 | 1 | 215 | 13 | 228 | 3.72e-51 | 167 |
Msa1091000 | AT3G16690.3 | 39.171 | 217 | 129 | 2 | 1 | 215 | 48 | 263 | 7.92e-51 | 167 |
Msa1091000 | AT4G15920.1 | 39.738 | 229 | 126 | 3 | 1 | 217 | 13 | 241 | 9.19e-51 | 166 |
Msa1091000 | AT1G21460.1 | 38.211 | 246 | 137 | 4 | 1 | 243 | 13 | 246 | 1.02e-46 | 156 |
Msa1091000 | AT4G10850.1 | 34.167 | 240 | 151 | 4 | 1 | 233 | 18 | 257 | 1.48e-38 | 135 |
Msa1091000 | AT5G53190.1 | 32.296 | 257 | 143 | 8 | 1 | 241 | 14 | 255 | 4.64e-34 | 124 |
Msa1091000 | AT5G62850.1 | 34.101 | 217 | 132 | 5 | 1 | 209 | 16 | 229 | 5.05e-34 | 123 |
Msa1091000 | AT5G40260.1 | 36.916 | 214 | 124 | 6 | 1 | 208 | 16 | 224 | 5.77e-34 | 123 |
Msa1091000 | AT1G21460.2 | 38.947 | 190 | 113 | 2 | 1 | 188 | 13 | 201 | 1.97e-33 | 120 |
Msa1091000 | AT3G14770.1 | 36.486 | 222 | 119 | 8 | 1 | 212 | 22 | 231 | 3.98e-32 | 118 |
Msa1091000 | AT1G66770.1 | 32.243 | 214 | 138 | 3 | 1 | 209 | 18 | 229 | 1.18e-31 | 117 |
Msa1091000 | AT5G40260.2 | 38.068 | 176 | 103 | 4 | 1 | 171 | 16 | 190 | 2.82e-30 | 112 |
Msa1091000 | AT5G62850.2 | 34.884 | 172 | 104 | 4 | 1 | 167 | 16 | 184 | 1.06e-26 | 103 |
Msa1091000 | AT3G28007.1 | 31.557 | 244 | 152 | 5 | 1 | 241 | 16 | 247 | 2.44e-26 | 103 |
Msa1091000 | AT3G16690.2 | 34.752 | 141 | 89 | 2 | 1 | 139 | 13 | 152 | 6.32e-25 | 98.2 |
Find 59 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATTTCGTTCTTGGTGTTCT+TGG | 0.169280 | 7_3:-6097130 | Msa1091000:CDS |
CACACATCCAAATGAGTTTA+TGG | 0.188728 | 7_3:+6096878 | None:intergenic |
CCACTTCGTGTCCAAGTTCT+TGG | 0.244317 | 7_3:-6096602 | Msa1091000:CDS |
TCGATTTCTTCTTGTATATA+CGG | 0.244759 | 7_3:+6097000 | None:intergenic |
CTCATTACCATAAACTCATT+TGG | 0.319248 | 7_3:-6096885 | Msa1091000:CDS |
AGGTAACGTCATTTCGTTCT+TGG | 0.323739 | 7_3:-6097139 | None:intergenic |
CTTAACTTTCAAGTTACTTT+CGG | 0.328483 | 7_3:-6096684 | Msa1091000:CDS |
AATGTGTTGGGTTTCGTATT+GGG | 0.328786 | 7_3:-6096049 | Msa1091000:CDS |
CTTTGTTCAGCTCCATGCTT+TGG | 0.359151 | 7_3:-6096944 | Msa1091000:CDS |
AATACGAAACCCAACACATT+TGG | 0.368529 | 7_3:+6096052 | None:intergenic |
AAATGTGTTGGGTTTCGTAT+TGG | 0.380441 | 7_3:-6096050 | Msa1091000:CDS |
CACAAACCCATCCAAGAACT+TGG | 0.408159 | 7_3:+6096591 | None:intergenic |
ATTTAAACTCCAGAGCCAAT+AGG | 0.432197 | 7_3:+6095845 | None:intergenic |
TTCGTGTCCAAGTTCTTGGA+TGG | 0.434485 | 7_3:-6096598 | Msa1091000:CDS |
ATACGAAACCCAACACATTT+GGG | 0.439248 | 7_3:+6096053 | None:intergenic |
TGCTGCTGTATGCAATCTAT+AGG | 0.452278 | 7_3:-6096015 | Msa1091000:CDS |
AATAATACCCTTGCATCTCT+TGG | 0.455895 | 7_3:+6096816 | None:intergenic |
GTTCAAAGTGAGGAACCTAT+TGG | 0.474459 | 7_3:-6095860 | Msa1091000:CDS |
TATTGTTATAGAGACCCAAT+TGG | 0.489238 | 7_3:-6095933 | Msa1091000:CDS |
AGTGAGGAACCTATTGGCTC+TGG | 0.490260 | 7_3:-6095854 | Msa1091000:CDS |
GTACATACCACAATGCTTAG+TGG | 0.491986 | 7_3:+6096539 | None:intergenic |
GCCACAATGTGGTTTGGCTA+CGG | 0.514248 | 7_3:-6096351 | Msa1091000:CDS |
TTGAGTGCCACAATGTGGTT+TGG | 0.514750 | 7_3:-6096357 | Msa1091000:CDS |
TCGTGTCCAAGTTCTTGGAT+GGG | 0.519498 | 7_3:-6096597 | Msa1091000:CDS |
CTGAACAAAGCTACTAGGTA+AGG | 0.520832 | 7_3:+6096957 | None:intergenic |
TGGAGCTGAACAAAGCTACT+AGG | 0.521833 | 7_3:+6096952 | None:intergenic |
CTGCAAAGACACTAACACTA+AGG | 0.526938 | 7_3:+6096564 | None:intergenic |
GTGCAGCTCCCAAATGTGTT+GGG | 0.530668 | 7_3:-6096061 | Msa1091000:intron |
GAACAAGGGTGATGATAATG+AGG | 0.540496 | 7_3:-6095888 | Msa1091000:CDS |
ATGCAATCTATAGGAATGGT+GGG | 0.547366 | 7_3:-6096006 | Msa1091000:CDS |
CAAATGAGTTTATGGTAATG+AGG | 0.551806 | 7_3:+6096886 | None:intergenic |
CATAAACTCATTTGGATGTG+TGG | 0.553344 | 7_3:-6096877 | Msa1091000:CDS |
GTTACTTTCGGCAATGAACG+TGG | 0.564481 | 7_3:-6096672 | Msa1091000:CDS |
TACAAGAAGAAATCGACAGA+GGG | 0.564739 | 7_3:-6096993 | Msa1091000:CDS |
GACACGAAGTGGACCATGCA+CGG | 0.579340 | 7_3:+6096613 | None:intergenic |
TGGCTACGGTCTCTTCCTCA+AGG | 0.581206 | 7_3:-6096337 | Msa1091000:CDS |
TGTGCAGCTCCCAAATGTGT+TGG | 0.581637 | 7_3:-6096062 | Msa1091000:intron |
GATGTACAATATGATGTAGA+TGG | 0.583280 | 7_3:+6096848 | None:intergenic |
GTCACTAACTATGCCGTGCA+TGG | 0.586420 | 7_3:-6096626 | Msa1091000:CDS |
CCAAGAACTTGGACACGAAG+TGG | 0.588617 | 7_3:+6096602 | None:intergenic |
CGGCATAGTTAGTGACTATG+AGG | 0.591246 | 7_3:+6096633 | None:intergenic |
GACTATGAGGATCAAAGCAA+AGG | 0.596059 | 7_3:+6096646 | None:intergenic |
CTGTATGCAATCTATAGGAA+TGG | 0.607405 | 7_3:-6096010 | Msa1091000:CDS |
CTATGCACCAAGAGATGCAA+GGG | 0.607841 | 7_3:-6096823 | Msa1091000:intron |
TGCATAGTACAACCAAAGCA+TGG | 0.611574 | 7_3:+6096932 | None:intergenic |
TATGCAATCTATAGGAATGG+TGG | 0.615800 | 7_3:-6096007 | Msa1091000:CDS |
CAGCAATGCATATGTCCTTG+AGG | 0.616655 | 7_3:+6096322 | None:intergenic |
AGAGTGAATGACAAATTGAA+AGG | 0.622293 | 7_3:+6096384 | None:intergenic |
TACTTTCGGCAATGAACGTG+GGG | 0.627256 | 7_3:-6096670 | Msa1091000:CDS |
TTACTTTCGGCAATGAACGT+GGG | 0.632501 | 7_3:-6096671 | Msa1091000:CDS |
TGCAAAGACACTAACACTAA+GGG | 0.634955 | 7_3:+6096565 | None:intergenic |
TGCAATCTATAGGAATGGTG+GGG | 0.637303 | 7_3:-6096005 | Msa1091000:CDS |
TGCAGCACCACTAAGCATTG+TGG | 0.637500 | 7_3:-6096546 | Msa1091000:intron |
TGAACAAGAAAAGAAGAACA+AGG | 0.638374 | 7_3:-6095903 | Msa1091000:CDS |
GAACAAGAAAAGAAGAACAA+GGG | 0.658330 | 7_3:-6095902 | Msa1091000:CDS |
TCTATGCACCAAGAGATGCA+AGG | 0.675820 | 7_3:-6096824 | Msa1091000:CDS |
TCACATTGAGTGCCACAATG+TGG | 0.691357 | 7_3:-6096362 | Msa1091000:CDS |
ATACAAGAAGAAATCGACAG+AGG | 0.715649 | 7_3:-6096994 | Msa1091000:CDS |
ACCGTAGCCAAACCACATTG+TGG | 0.726020 | 7_3:+6096350 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTTAAATAAATACTTACAT+TGG | + | chr7_3:6095883-6095902 | None:intergenic | 10.0% |
!! | CATTCAATAATAAATATTTA+AGG | + | chr7_3:6096276-6096295 | None:intergenic | 10.0% |
!! | TTATATATATTAATTGAGTA+AGG | + | chr7_3:6096483-6096502 | None:intergenic | 10.0% |
!! | AAAAGAAAAAATAAAATTAG+TGG | - | chr7_3:6096707-6096726 | Msa1091000:intron | 10.0% |
!! | ATTTAAATAAATACTTACAT+TGG | + | chr7_3:6095883-6095902 | None:intergenic | 10.0% |
!! | CATTCAATAATAAATATTTA+AGG | + | chr7_3:6096276-6096295 | None:intergenic | 10.0% |
!! | TTATATATATTAATTGAGTA+AGG | + | chr7_3:6096483-6096502 | None:intergenic | 10.0% |
!! | AAAAGAAAAAATAAAATTAG+TGG | - | chr7_3:6096707-6096726 | Msa1091000:intron | 10.0% |
!! | AGATATTAATGTTCAATTAT+TGG | + | chr7_3:6096224-6096243 | None:intergenic | 15.0% |
!!! | TTTTCTTGAAATTTATATGT+AGG | - | chr7_3:6096543-6096562 | Msa1091000:intron | 15.0% |
!! | GATTTCATCAAAAAATAATT+AGG | + | chr7_3:6096832-6096851 | None:intergenic | 15.0% |
!! | AGATATTAATGTTCAATTAT+TGG | + | chr7_3:6096224-6096243 | None:intergenic | 15.0% |
!!! | TTTTCTTGAAATTTATATGT+AGG | - | chr7_3:6096543-6096562 | Msa1091000:intron | 15.0% |
!! | GATTTCATCAAAAAATAATT+AGG | + | chr7_3:6096832-6096851 | None:intergenic | 15.0% |
!! | TTAATGTTCAATTATTGGAT+TGG | + | chr7_3:6096219-6096238 | None:intergenic | 20.0% |
!!! | AGTTTGATTTATGAACTTAA+TGG | - | chr7_3:6096511-6096530 | Msa1091000:intron | 20.0% |
!! | AAAACAATCAAATTATGACA+AGG | + | chr7_3:6096756-6096775 | None:intergenic | 20.0% |
!!! | TTGTTCAATTTTTTCCAATT+GGG | + | chr7_3:6097069-6097088 | None:intergenic | 20.0% |
!! | TTAATGTTCAATTATTGGAT+TGG | + | chr7_3:6096219-6096238 | None:intergenic | 20.0% |
!!! | AGTTTGATTTATGAACTTAA+TGG | - | chr7_3:6096511-6096530 | Msa1091000:intron | 20.0% |
!! | AAAACAATCAAATTATGACA+AGG | + | chr7_3:6096756-6096775 | None:intergenic | 20.0% |
!!! | TTGTTCAATTTTTTCCAATT+GGG | + | chr7_3:6097069-6097088 | None:intergenic | 20.0% |
! | TCGATTTCTTCTTGTATATA+CGG | + | chr7_3:6095988-6096007 | None:intergenic | 25.0% |
!!! | CTTAACTTTCAAGTTACTTT+CGG | - | chr7_3:6096301-6096320 | Msa1091000:intron | 25.0% |
!! | TCTATAACAATACTTTTGAG+TGG | + | chr7_3:6097044-6097063 | None:intergenic | 25.0% |
!!! | CTTGTTCAATTTTTTCCAAT+TGG | + | chr7_3:6097070-6097089 | None:intergenic | 25.0% |
! | TCGATTTCTTCTTGTATATA+CGG | + | chr7_3:6095988-6096007 | None:intergenic | 25.0% |
!!! | CTTAACTTTCAAGTTACTTT+CGG | - | chr7_3:6096301-6096320 | Msa1091000:intron | 25.0% |
!! | TCTATAACAATACTTTTGAG+TGG | + | chr7_3:6097044-6097063 | None:intergenic | 25.0% |
!!! | CTTGTTCAATTTTTTCCAAT+TGG | + | chr7_3:6097070-6097089 | None:intergenic | 25.0% |
! | CAAATGAGTTTATGGTAATG+AGG | + | chr7_3:6096102-6096121 | None:intergenic | 30.0% |
CTCATTACCATAAACTCATT+TGG | - | chr7_3:6096100-6096119 | Msa1091000:intron | 30.0% | |
GATGTACAATATGATGTAGA+TGG | + | chr7_3:6096140-6096159 | None:intergenic | 30.0% | |
AGAGTGAATGACAAATTGAA+AGG | + | chr7_3:6096604-6096623 | None:intergenic | 30.0% | |
TATTGTTATAGAGACCCAAT+TGG | - | chr7_3:6097052-6097071 | Msa1091000:intron | 30.0% | |
TGAACAAGAAAAGAAGAACA+AGG | - | chr7_3:6097082-6097101 | Msa1091000:intron | 30.0% | |
GAACAAGAAAAGAAGAACAA+GGG | - | chr7_3:6097083-6097102 | Msa1091000:intron | 30.0% | |
! | CAAATGAGTTTATGGTAATG+AGG | + | chr7_3:6096102-6096121 | None:intergenic | 30.0% |
CTCATTACCATAAACTCATT+TGG | - | chr7_3:6096100-6096119 | Msa1091000:intron | 30.0% | |
GATGTACAATATGATGTAGA+TGG | + | chr7_3:6096140-6096159 | None:intergenic | 30.0% | |
AGAGTGAATGACAAATTGAA+AGG | + | chr7_3:6096604-6096623 | None:intergenic | 30.0% | |
TATTGTTATAGAGACCCAAT+TGG | - | chr7_3:6097052-6097071 | Msa1091000:intron | 30.0% | |
TGAACAAGAAAAGAAGAACA+AGG | - | chr7_3:6097082-6097101 | Msa1091000:intron | 30.0% | |
GAACAAGAAAAGAAGAACAA+GGG | - | chr7_3:6097083-6097102 | Msa1091000:intron | 30.0% | |
ATACAAGAAGAAATCGACAG+AGG | - | chr7_3:6095991-6096010 | Msa1091000:CDS | 35.0% | |
TACAAGAAGAAATCGACAGA+GGG | - | chr7_3:6095992-6096011 | Msa1091000:CDS | 35.0% | |
CACACATCCAAATGAGTTTA+TGG | + | chr7_3:6096110-6096129 | None:intergenic | 35.0% | |
CATAAACTCATTTGGATGTG+TGG | - | chr7_3:6096108-6096127 | Msa1091000:intron | 35.0% | |
AATAATACCCTTGCATCTCT+TGG | + | chr7_3:6096172-6096191 | None:intergenic | 35.0% | |
TGCAAAGACACTAACACTAA+GGG | + | chr7_3:6096423-6096442 | None:intergenic | 35.0% | |
ATACGAAACCCAACACATTT+GGG | + | chr7_3:6096935-6096954 | None:intergenic | 35.0% | |
AATACGAAACCCAACACATT+TGG | + | chr7_3:6096936-6096955 | None:intergenic | 35.0% | |
AAATGTGTTGGGTTTCGTAT+TGG | - | chr7_3:6096935-6096954 | Msa1091000:CDS | 35.0% | |
AATGTGTTGGGTTTCGTATT+GGG | - | chr7_3:6096936-6096955 | Msa1091000:CDS | 35.0% | |
CTGTATGCAATCTATAGGAA+TGG | - | chr7_3:6096975-6096994 | Msa1091000:CDS | 35.0% | |
TATGCAATCTATAGGAATGG+TGG | - | chr7_3:6096978-6096997 | Msa1091000:CDS | 35.0% | |
ATGCAATCTATAGGAATGGT+GGG | - | chr7_3:6096979-6096998 | Msa1091000:CDS | 35.0% | |
TGGGGAAAAAGCTATGAAAA+AGG | - | chr7_3:6096998-6097017 | Msa1091000:CDS | 35.0% | |
!! | ATACTTTTGAGTGGCTCAAT+TGG | + | chr7_3:6097035-6097054 | None:intergenic | 35.0% |
TGAGGAAAAAGTTCAAAGTG+AGG | - | chr7_3:6097115-6097134 | Msa1091000:intron | 35.0% | |
ATACAAGAAGAAATCGACAG+AGG | - | chr7_3:6095991-6096010 | Msa1091000:CDS | 35.0% | |
TACAAGAAGAAATCGACAGA+GGG | - | chr7_3:6095992-6096011 | Msa1091000:CDS | 35.0% | |
CACACATCCAAATGAGTTTA+TGG | + | chr7_3:6096110-6096129 | None:intergenic | 35.0% | |
CATAAACTCATTTGGATGTG+TGG | - | chr7_3:6096108-6096127 | Msa1091000:intron | 35.0% | |
AATAATACCCTTGCATCTCT+TGG | + | chr7_3:6096172-6096191 | None:intergenic | 35.0% | |
TGCAAAGACACTAACACTAA+GGG | + | chr7_3:6096423-6096442 | None:intergenic | 35.0% | |
ATACGAAACCCAACACATTT+GGG | + | chr7_3:6096935-6096954 | None:intergenic | 35.0% | |
AATACGAAACCCAACACATT+TGG | + | chr7_3:6096936-6096955 | None:intergenic | 35.0% | |
AAATGTGTTGGGTTTCGTAT+TGG | - | chr7_3:6096935-6096954 | Msa1091000:CDS | 35.0% | |
AATGTGTTGGGTTTCGTATT+GGG | - | chr7_3:6096936-6096955 | Msa1091000:CDS | 35.0% | |
CTGTATGCAATCTATAGGAA+TGG | - | chr7_3:6096975-6096994 | Msa1091000:CDS | 35.0% | |
TATGCAATCTATAGGAATGG+TGG | - | chr7_3:6096978-6096997 | Msa1091000:CDS | 35.0% | |
ATGCAATCTATAGGAATGGT+GGG | - | chr7_3:6096979-6096998 | Msa1091000:CDS | 35.0% | |
TGGGGAAAAAGCTATGAAAA+AGG | - | chr7_3:6096998-6097017 | Msa1091000:CDS | 35.0% | |
!! | ATACTTTTGAGTGGCTCAAT+TGG | + | chr7_3:6097035-6097054 | None:intergenic | 35.0% |
TGAGGAAAAAGTTCAAAGTG+AGG | - | chr7_3:6097115-6097134 | Msa1091000:intron | 35.0% | |
!! | CATTTCGTTCTTGGTGTTCT+TGG | - | chr7_3:6095855-6095874 | Msa1091000:CDS | 40.0% |
CTGAACAAAGCTACTAGGTA+AGG | + | chr7_3:6096031-6096050 | None:intergenic | 40.0% | |
TGCATAGTACAACCAAAGCA+TGG | + | chr7_3:6096056-6096075 | None:intergenic | 40.0% | |
TTACTTTCGGCAATGAACGT+GGG | - | chr7_3:6096314-6096333 | Msa1091000:intron | 40.0% | |
GACTATGAGGATCAAAGCAA+AGG | + | chr7_3:6096342-6096361 | None:intergenic | 40.0% | |
CTGCAAAGACACTAACACTA+AGG | + | chr7_3:6096424-6096443 | None:intergenic | 40.0% | |
GTACATACCACAATGCTTAG+TGG | + | chr7_3:6096449-6096468 | None:intergenic | 40.0% | |
TGCTGCTGTATGCAATCTAT+AGG | - | chr7_3:6096970-6096989 | Msa1091000:CDS | 40.0% | |
TGCAATCTATAGGAATGGTG+GGG | - | chr7_3:6096980-6096999 | Msa1091000:CDS | 40.0% | |
! | GAACAAGGGTGATGATAATG+AGG | - | chr7_3:6097097-6097116 | Msa1091000:intron | 40.0% |
GTTCAAAGTGAGGAACCTAT+TGG | - | chr7_3:6097125-6097144 | Msa1091000:CDS | 40.0% | |
!! | CATTTCGTTCTTGGTGTTCT+TGG | - | chr7_3:6095855-6095874 | Msa1091000:CDS | 40.0% |
CTGAACAAAGCTACTAGGTA+AGG | + | chr7_3:6096031-6096050 | None:intergenic | 40.0% | |
TGCATAGTACAACCAAAGCA+TGG | + | chr7_3:6096056-6096075 | None:intergenic | 40.0% | |
TTACTTTCGGCAATGAACGT+GGG | - | chr7_3:6096314-6096333 | Msa1091000:intron | 40.0% | |
GACTATGAGGATCAAAGCAA+AGG | + | chr7_3:6096342-6096361 | None:intergenic | 40.0% | |
CTGCAAAGACACTAACACTA+AGG | + | chr7_3:6096424-6096443 | None:intergenic | 40.0% | |
GTACATACCACAATGCTTAG+TGG | + | chr7_3:6096449-6096468 | None:intergenic | 40.0% | |
TGCTGCTGTATGCAATCTAT+AGG | - | chr7_3:6096970-6096989 | Msa1091000:CDS | 40.0% | |
TGCAATCTATAGGAATGGTG+GGG | - | chr7_3:6096980-6096999 | Msa1091000:CDS | 40.0% | |
! | GAACAAGGGTGATGATAATG+AGG | - | chr7_3:6097097-6097116 | Msa1091000:intron | 40.0% |
GTTCAAAGTGAGGAACCTAT+TGG | - | chr7_3:6097125-6097144 | Msa1091000:CDS | 40.0% | |
TGGAGCTGAACAAAGCTACT+AGG | + | chr7_3:6096036-6096055 | None:intergenic | 45.0% | |
CTTTGTTCAGCTCCATGCTT+TGG | - | chr7_3:6096041-6096060 | Msa1091000:CDS | 45.0% | |
TCTATGCACCAAGAGATGCA+AGG | - | chr7_3:6096161-6096180 | Msa1091000:intron | 45.0% | |
CTATGCACCAAGAGATGCAA+GGG | - | chr7_3:6096162-6096181 | Msa1091000:intron | 45.0% | |
! | GTTACTTTCGGCAATGAACG+TGG | - | chr7_3:6096313-6096332 | Msa1091000:intron | 45.0% |
TACTTTCGGCAATGAACGTG+GGG | - | chr7_3:6096315-6096334 | Msa1091000:intron | 45.0% | |
CGGCATAGTTAGTGACTATG+AGG | + | chr7_3:6096355-6096374 | None:intergenic | 45.0% | |
TTCGTGTCCAAGTTCTTGGA+TGG | - | chr7_3:6096387-6096406 | Msa1091000:CDS | 45.0% | |
TCGTGTCCAAGTTCTTGGAT+GGG | - | chr7_3:6096388-6096407 | Msa1091000:CDS | 45.0% | |
CACAAACCCATCCAAGAACT+TGG | + | chr7_3:6096397-6096416 | None:intergenic | 45.0% | |
TCACATTGAGTGCCACAATG+TGG | - | chr7_3:6096623-6096642 | Msa1091000:CDS | 45.0% | |
TTGAGTGCCACAATGTGGTT+TGG | - | chr7_3:6096628-6096647 | Msa1091000:CDS | 45.0% | |
CAGCAATGCATATGTCCTTG+AGG | + | chr7_3:6096666-6096685 | None:intergenic | 45.0% | |
TGGAGCTGAACAAAGCTACT+AGG | + | chr7_3:6096036-6096055 | None:intergenic | 45.0% | |
CTTTGTTCAGCTCCATGCTT+TGG | - | chr7_3:6096041-6096060 | Msa1091000:CDS | 45.0% | |
TCTATGCACCAAGAGATGCA+AGG | - | chr7_3:6096161-6096180 | Msa1091000:intron | 45.0% | |
CTATGCACCAAGAGATGCAA+GGG | - | chr7_3:6096162-6096181 | Msa1091000:intron | 45.0% | |
! | GTTACTTTCGGCAATGAACG+TGG | - | chr7_3:6096313-6096332 | Msa1091000:intron | 45.0% |
TACTTTCGGCAATGAACGTG+GGG | - | chr7_3:6096315-6096334 | Msa1091000:intron | 45.0% | |
CGGCATAGTTAGTGACTATG+AGG | + | chr7_3:6096355-6096374 | None:intergenic | 45.0% | |
TTCGTGTCCAAGTTCTTGGA+TGG | - | chr7_3:6096387-6096406 | Msa1091000:CDS | 45.0% | |
TCGTGTCCAAGTTCTTGGAT+GGG | - | chr7_3:6096388-6096407 | Msa1091000:CDS | 45.0% | |
CACAAACCCATCCAAGAACT+TGG | + | chr7_3:6096397-6096416 | None:intergenic | 45.0% | |
TCACATTGAGTGCCACAATG+TGG | - | chr7_3:6096623-6096642 | Msa1091000:CDS | 45.0% | |
TTGAGTGCCACAATGTGGTT+TGG | - | chr7_3:6096628-6096647 | Msa1091000:CDS | 45.0% | |
CAGCAATGCATATGTCCTTG+AGG | + | chr7_3:6096666-6096685 | None:intergenic | 45.0% | |
GTCACTAACTATGCCGTGCA+TGG | - | chr7_3:6096359-6096378 | Msa1091000:CDS | 50.0% | |
CCAAGAACTTGGACACGAAG+TGG | + | chr7_3:6096386-6096405 | None:intergenic | 50.0% | |
CCACTTCGTGTCCAAGTTCT+TGG | - | chr7_3:6096383-6096402 | Msa1091000:CDS | 50.0% | |
! | TGCAGCACCACTAAGCATTG+TGG | - | chr7_3:6096439-6096458 | Msa1091000:intron | 50.0% |
! | GCCACAATGTGGTTTGGCTA+CGG | - | chr7_3:6096634-6096653 | Msa1091000:CDS | 50.0% |
ACCGTAGCCAAACCACATTG+TGG | + | chr7_3:6096638-6096657 | None:intergenic | 50.0% | |
TGTGCAGCTCCCAAATGTGT+TGG | - | chr7_3:6096923-6096942 | Msa1091000:CDS | 50.0% | |
GTGCAGCTCCCAAATGTGTT+GGG | - | chr7_3:6096924-6096943 | Msa1091000:CDS | 50.0% | |
!! | AGTGAGGAACCTATTGGCTC+TGG | - | chr7_3:6097131-6097150 | Msa1091000:CDS | 50.0% |
GTCACTAACTATGCCGTGCA+TGG | - | chr7_3:6096359-6096378 | Msa1091000:CDS | 50.0% | |
CCAAGAACTTGGACACGAAG+TGG | + | chr7_3:6096386-6096405 | None:intergenic | 50.0% | |
CCACTTCGTGTCCAAGTTCT+TGG | - | chr7_3:6096383-6096402 | Msa1091000:CDS | 50.0% | |
! | TGCAGCACCACTAAGCATTG+TGG | - | chr7_3:6096439-6096458 | Msa1091000:intron | 50.0% |
! | GCCACAATGTGGTTTGGCTA+CGG | - | chr7_3:6096634-6096653 | Msa1091000:CDS | 50.0% |
ACCGTAGCCAAACCACATTG+TGG | + | chr7_3:6096638-6096657 | None:intergenic | 50.0% | |
TGTGCAGCTCCCAAATGTGT+TGG | - | chr7_3:6096923-6096942 | Msa1091000:CDS | 50.0% | |
GTGCAGCTCCCAAATGTGTT+GGG | - | chr7_3:6096924-6096943 | Msa1091000:CDS | 50.0% | |
!! | AGTGAGGAACCTATTGGCTC+TGG | - | chr7_3:6097131-6097150 | Msa1091000:CDS | 50.0% |
GACACGAAGTGGACCATGCA+CGG | + | chr7_3:6096375-6096394 | None:intergenic | 55.0% | |
TGGCTACGGTCTCTTCCTCA+AGG | - | chr7_3:6096648-6096667 | Msa1091000:CDS | 55.0% | |
GACACGAAGTGGACCATGCA+CGG | + | chr7_3:6096375-6096394 | None:intergenic | 55.0% | |
TGGCTACGGTCTCTTCCTCA+AGG | - | chr7_3:6096648-6096667 | Msa1091000:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_3 | gene | 6095850 | 6097157 | 6095850 | ID=Msa1091000;Name=Msa1091000 |
chr7_3 | mRNA | 6095850 | 6097157 | 6095850 | ID=Msa1091000-mRNA-1;Parent=Msa1091000;Name=Msa1091000-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|0.6|5|0|252 |
chr7_3 | exon | 6097123 | 6097157 | 6097123 | ID=Msa1091000-mRNA-1:exon:1880;Parent=Msa1091000-mRNA-1 |
chr7_3 | exon | 6096824 | 6097034 | 6096824 | ID=Msa1091000-mRNA-1:exon:1879;Parent=Msa1091000-mRNA-1 |
chr7_3 | exon | 6096547 | 6096708 | 6096547 | ID=Msa1091000-mRNA-1:exon:1878;Parent=Msa1091000-mRNA-1 |
chr7_3 | exon | 6096323 | 6096442 | 6096323 | ID=Msa1091000-mRNA-1:exon:1877;Parent=Msa1091000-mRNA-1 |
chr7_3 | exon | 6095850 | 6096077 | 6095850 | ID=Msa1091000-mRNA-1:exon:1876;Parent=Msa1091000-mRNA-1 |
chr7_3 | CDS | 6097123 | 6097157 | 6097123 | ID=Msa1091000-mRNA-1:cds;Parent=Msa1091000-mRNA-1 |
chr7_3 | CDS | 6096824 | 6097034 | 6096824 | ID=Msa1091000-mRNA-1:cds;Parent=Msa1091000-mRNA-1 |
chr7_3 | CDS | 6096547 | 6096708 | 6096547 | ID=Msa1091000-mRNA-1:cds;Parent=Msa1091000-mRNA-1 |
chr7_3 | CDS | 6096323 | 6096442 | 6096323 | ID=Msa1091000-mRNA-1:cds;Parent=Msa1091000-mRNA-1 |
chr7_3 | CDS | 6095850 | 6096077 | 6095850 | ID=Msa1091000-mRNA-1:cds;Parent=Msa1091000-mRNA-1 |
Gene Sequence |
Protein sequence |