Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1118710 | XP_003624637.1 | 90.110 | 91 | 1 | 1 | 141 | 231 | 156 | 238 | 9.19e-23 | 103 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1118710 | Q2HVN6 | 90.110 | 91 | 1 | 1 | 141 | 231 | 156 | 238 | 4.39e-23 | 103 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0097950 | Msa1118710 | 0.804841 | 1.779950e-49 | -8.615850e-47 |
| Msa0100800 | Msa1118710 | 0.803634 | 3.174977e-49 | -8.615850e-47 |
| Msa0108870 | Msa1118710 | 0.800363 | 1.492461e-48 | -8.615850e-47 |
| Msa0620330 | Msa1118710 | 0.800588 | 1.343457e-48 | -8.615850e-47 |
| Msa0644030 | Msa1118710 | 0.804345 | 2.259096e-49 | -8.615850e-47 |
| Msa0687230 | Msa1118710 | 0.826920 | 2.081460e-54 | -8.615850e-47 |
| Msa0756930 | Msa1118710 | 0.810252 | 1.264510e-50 | -8.615850e-47 |
| Msa0776750 | Msa1118710 | 0.823128 | 1.636006e-53 | -8.615850e-47 |
| Msa0799580 | Msa1118710 | 0.805254 | 1.458799e-49 | -8.615850e-47 |
| Msa0818770 | Msa1118710 | 0.877860 | 4.477183e-69 | -8.615850e-47 |
| Msa0822170 | Msa1118710 | 0.801506 | 8.717780e-49 | -8.615850e-47 |
| Msa0202930 | Msa1118710 | 0.827610 | 1.422919e-54 | -8.615850e-47 |
| Msa0384670 | Msa1118710 | 0.848555 | 5.687753e-60 | -8.615850e-47 |
| Msa0434570 | Msa1118710 | 0.832819 | 7.604969e-56 | -8.615850e-47 |
| Msa0434770 | Msa1118710 | 0.842307 | 2.801039e-58 | -8.615850e-47 |
| Msa0439890 | Msa1118710 | 0.820154 | 7.967502e-53 | -8.615850e-47 |
| Msa0472720 | Msa1118710 | 0.810626 | 1.049961e-50 | -8.615850e-47 |
| Msa0478580 | Msa1118710 | 0.845662 | 3.531561e-59 | -8.615850e-47 |
| Msa1010460 | Msa1118710 | 0.808755 | 2.650420e-50 | -8.615850e-47 |
| Msa1033970 | Msa1118710 | 0.807255 | 5.527493e-50 | -8.615850e-47 |
| Msa1071660 | Msa1118710 | 0.972140 | 2.777758e-134 | -8.615850e-47 |
| Msa1073830 | Msa1118710 | 0.828542 | 8.486758e-55 | -8.615850e-47 |
| Msa0284450 | Msa1118710 | 0.810509 | 1.112586e-50 | -8.615850e-47 |
| Msa0358120 | Msa1118710 | 0.807712 | 4.421787e-50 | -8.615850e-47 |
| Msa1114040 | Msa1118710 | 0.844581 | 6.916999e-59 | -8.615850e-47 |
| Msa1118710 | Msa1128330 | 0.826093 | 3.278164e-54 | -8.615850e-47 |
| Msa1118710 | Msa1158770 | 0.970888 | 2.629933e-132 | -8.615850e-47 |
| Msa1118710 | Msa1173900 | 0.829215 | 5.830080e-55 | -8.615850e-47 |
| Msa1118710 | Msa1178370 | 0.843494 | 1.353704e-58 | -8.615850e-47 |
| Msa1118710 | Msa1206650 | 0.804289 | 2.319944e-49 | -8.615850e-47 |
| Msa1118710 | Msa1207730 | 0.806437 | 8.231461e-50 | -8.615850e-47 |
| Msa1118710 | Msa1211830 | 0.822645 | 2.120600e-53 | -8.615850e-47 |
| Msa1118710 | Msa1226610 | 0.810085 | 1.373774e-50 | -8.615850e-47 |
| Msa1118710 | Msa1297800 | 0.800757 | 1.240707e-48 | -8.615850e-47 |
| Msa1118710 | Msa1299700 | 0.813724 | 2.214415e-51 | -8.615850e-47 |
| Msa1118710 | Msa1318620 | 0.824671 | 7.115134e-54 | -8.615850e-47 |
| Msa1118710 | Msa1344310 | 0.801837 | 7.457289e-49 | -8.615850e-47 |
| Msa0511770 | Msa1118710 | 0.811345 | 7.335688e-51 | -8.615850e-47 |
| Msa0546570 | Msa1118710 | 0.806078 | 9.793668e-50 | -8.615850e-47 |
| Msa0547990 | Msa1118710 | 0.804534 | 2.063269e-49 | -8.615850e-47 |
| Msa0576890 | Msa1118710 | 0.800942 | 1.137437e-48 | -8.615850e-47 |
| Msa0583500 | Msa1118710 | 0.810946 | 8.949831e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1118710 | MtrunA17_Chr7g0253451 | 90.110 | 91 | 1 | 1 | 141 | 231 | 156 | 238 | 8.45e-27 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 42 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGACAAGGAGAAGAAGAAAA+AGG | 0.262656 | 7_3:-67458553 | Msa1118710:CDS |
| AGATAAAGATGGGGAGAAAA+AGG | 0.318758 | 7_3:-67458658 | Msa1118710:CDS |
| GAAGAGAAGAAGAAGAAATC+TGG | 0.355241 | 7_3:-67458131 | Msa1118710:CDS |
| GGACAAGAATGAAGATGATA+AGG | 0.365593 | 7_3:-67458351 | Msa1118710:CDS |
| AGCTTCTGTTTCAGCTTACT+AGG | 0.366926 | 7_3:+67458089 | None:intergenic |
| TTTCAGCTTACTAGGATCAT+TGG | 0.393959 | 7_3:+67458097 | None:intergenic |
| TGCAAAGTTAGAAGCACTCT+TGG | 0.412053 | 7_3:-67458054 | Msa1118710:CDS |
| AGAAAGACAAGGAGAAGAAA+AGG | 0.424351 | 7_3:-67458381 | Msa1118710:intron |
| CAGATTAAAGAAGGTGAAGA+TGG | 0.424543 | 7_3:-67458008 | Msa1118710:CDS |
| AGGAGAAGAAAAGGAAAAGA+AGG | 0.441424 | 7_3:-67458372 | Msa1118710:CDS |
| GGAGAAGAAGAAGGAAAAGA+AGG | 0.441872 | 7_3:-67458622 | Msa1118710:CDS |
| AAGAGGGCAAAGTATCTGTA+AGG | 0.456458 | 7_3:-67458241 | Msa1118710:CDS |
| CATAAGGATGAAGATAAAGA+TGG | 0.473869 | 7_3:-67458669 | Msa1118710:CDS |
| GAAGGATAAGGAGAAGAAGA+AGG | 0.480636 | 7_3:-67458631 | Msa1118710:CDS |
| GGAGAAGGAAAATGAGGGCA+AGG | 0.484443 | 7_3:-67458583 | Msa1118710:CDS |
| ATAAGGATGAAGATAAAGAT+GGG | 0.484895 | 7_3:-67458668 | Msa1118710:CDS |
| AGAGAAAGAGAAGAAACATA+AGG | 0.494698 | 7_3:-67458685 | Msa1118710:CDS |
| AAAGAAGATGATAAGAAAGA+AGG | 0.504770 | 7_3:-67458185 | Msa1118710:CDS |
| GAGGAGGATGAGAAAGAAGA+GGG | 0.511401 | 7_3:-67458257 | Msa1118710:CDS |
| CAAAACTGATGTAGAGGAGA+AGG | 0.513882 | 7_3:-67458598 | Msa1118710:CDS |
| AGAAGCACTCTTGGAAAAGA+AGG | 0.514342 | 7_3:-67458045 | Msa1118710:CDS |
| GATAAGGGTGAGGATGTTGA+TGG | 0.514784 | 7_3:-67458335 | Msa1118710:CDS |
| GACAAGAATGAAGATGATAA+GGG | 0.515351 | 7_3:-67458350 | Msa1118710:CDS |
| GAAGAAGAAGAAATCTGGAA+AGG | 0.525495 | 7_3:-67458126 | Msa1118710:CDS |
| AAAAGAAGGCTGATCTAGAA+AGG | 0.535925 | 7_3:-67458031 | Msa1118710:CDS |
| CTAGAAAGGCAGATTAAAGA+AGG | 0.541104 | 7_3:-67458017 | Msa1118710:CDS |
| ATCCTCAATCTTGATTTGAG+TGG | 0.542150 | 7_3:+67458773 | None:intergenic |
| AAGATTGAGGATAAATCTGC+AGG | 0.542679 | 7_3:-67458762 | Msa1118710:CDS |
| AAATGAGGGCAAGGATAAGA+AGG | 0.544812 | 7_3:-67458574 | Msa1118710:CDS |
| AGGTGGTGTAAAAGAAGATA+AGG | 0.558774 | 7_3:-67458742 | Msa1118710:CDS |
| TGTAGAGGAGAAGGAAAATG+AGG | 0.559175 | 7_3:-67458589 | Msa1118710:CDS |
| GAAGGACAAAACTGATGTAG+AGG | 0.562348 | 7_3:-67458604 | Msa1118710:CDS |
| GAATGAAGATGATAAGGGTG+AGG | 0.565457 | 7_3:-67458345 | Msa1118710:CDS |
| GGAGGAGGATGAGAAAGAAG+AGG | 0.565630 | 7_3:-67458258 | Msa1118710:CDS |
| CTCCACTCAAATCAAGATTG+AGG | 0.573595 | 7_3:-67458775 | Msa1118710:CDS |
| GTAGAGGAGAAGGAAAATGA+GGG | 0.590377 | 7_3:-67458588 | Msa1118710:CDS |
| TAAGGATGAAGATAAAGATG+GGG | 0.625024 | 7_3:-67458667 | Msa1118710:CDS |
| AGGTCAAGATATTAACGTGA+AGG | 0.638283 | 7_3:-67457985 | Msa1118710:CDS |
| AGAGGGCAAAGTATCTGTAA+GGG | 0.640140 | 7_3:-67458240 | Msa1118710:CDS |
| ATTAAAGAAGGTGAAGATGG+AGG | 0.660144 | 7_3:-67458005 | Msa1118710:CDS |
| GGGCAAGGATAAGAAGGACA+AGG | 0.662721 | 7_3:-67458568 | Msa1118710:CDS |
| ATTGAGGATAAATCTGCAGG+TGG | 0.690052 | 7_3:-67458759 | Msa1118710:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTAAGAAAAAGAAGAATA+AGG | - | chr7_3:67458448-67458467 | Msa1118710:intron | 20.0% |
| !! | AAGTAAGAAAAAGAAGAATA+AGG | - | chr7_3:67458448-67458467 | Msa1118710:intron | 20.0% |
| ! | ATAAGGATGAAGATAAAGAT+GGG | - | chr7_3:67458092-67458111 | Msa1118710:CDS | 25.0% |
| ! | GAAAAAGAAAAAGGAAAAGA+AGG | - | chr7_3:67458308-67458327 | Msa1118710:CDS | 25.0% |
| ! | GAAAAAGAAGGATAAAAATG+AGG | - | chr7_3:67458481-67458500 | Msa1118710:intron | 25.0% |
| ! | AAAGAAGATGATAAGAAAGA+AGG | - | chr7_3:67458575-67458594 | Msa1118710:CDS | 25.0% |
| ! | GAAGAAGAAAAAAGAAGATA+AGG | - | chr7_3:67458607-67458626 | Msa1118710:CDS | 25.0% |
| ! | ATAAGGATGAAGATAAAGAT+GGG | - | chr7_3:67458092-67458111 | Msa1118710:CDS | 25.0% |
| ! | GAAAAAGAAAAAGGAAAAGA+AGG | - | chr7_3:67458308-67458327 | Msa1118710:CDS | 25.0% |
| ! | GAAAAAGAAGGATAAAAATG+AGG | - | chr7_3:67458481-67458500 | Msa1118710:intron | 25.0% |
| ! | AAAGAAGATGATAAGAAAGA+AGG | - | chr7_3:67458575-67458594 | Msa1118710:CDS | 25.0% |
| ! | GAAGAAGAAAAAAGAAGATA+AGG | - | chr7_3:67458607-67458626 | Msa1118710:CDS | 25.0% |
| AGAGAAAGAGAAGAAACATA+AGG | - | chr7_3:67458075-67458094 | Msa1118710:CDS | 30.0% | |
| CATAAGGATGAAGATAAAGA+TGG | - | chr7_3:67458091-67458110 | Msa1118710:CDS | 30.0% | |
| TAAGGATGAAGATAAAGATG+GGG | - | chr7_3:67458093-67458112 | Msa1118710:CDS | 30.0% | |
| GAAAAAGGAAAAGAAGGATA+AGG | - | chr7_3:67458117-67458136 | Msa1118710:CDS | 30.0% | |
| GAAGAAGAAAAAGGAAAAGA+AGG | - | chr7_3:67458216-67458235 | Msa1118710:CDS | 30.0% | |
| GGATAAGGAGAAAAAGAAAA+AGG | - | chr7_3:67458299-67458318 | Msa1118710:CDS | 30.0% | |
| AAAAAGGAAAAGAAGGAGAA+GGG | - | chr7_3:67458315-67458334 | Msa1118710:CDS | 30.0% | |
| GAAGAAATCTAAGAAAGACA+AGG | - | chr7_3:67458368-67458387 | Msa1118710:CDS | 30.0% | |
| GACAAGAATGAAGATGATAA+GGG | - | chr7_3:67458410-67458429 | Msa1118710:intron | 30.0% | |
| GGATAAGAAAGAGAAAAAGA+AGG | - | chr7_3:67458469-67458488 | Msa1118710:intron | 30.0% | |
| AAAGAAGGATAAAAATGAGG+AGG | - | chr7_3:67458484-67458503 | Msa1118710:intron | 30.0% | |
| !! | ATCTTCTTTTTCACATTTCG+CGG | + | chr7_3:67458564-67458583 | None:intergenic | 30.0% |
| AGAGAAAGAGAAGAAACATA+AGG | - | chr7_3:67458075-67458094 | Msa1118710:CDS | 30.0% | |
| CATAAGGATGAAGATAAAGA+TGG | - | chr7_3:67458091-67458110 | Msa1118710:CDS | 30.0% | |
| TAAGGATGAAGATAAAGATG+GGG | - | chr7_3:67458093-67458112 | Msa1118710:CDS | 30.0% | |
| GAAAAAGGAAAAGAAGGATA+AGG | - | chr7_3:67458117-67458136 | Msa1118710:CDS | 30.0% | |
| GAAGAAGAAAAAGGAAAAGA+AGG | - | chr7_3:67458216-67458235 | Msa1118710:CDS | 30.0% | |
| GGATAAGGAGAAAAAGAAAA+AGG | - | chr7_3:67458299-67458318 | Msa1118710:CDS | 30.0% | |
| AAAAAGGAAAAGAAGGAGAA+GGG | - | chr7_3:67458315-67458334 | Msa1118710:CDS | 30.0% | |
| GAAGAAATCTAAGAAAGACA+AGG | - | chr7_3:67458368-67458387 | Msa1118710:CDS | 30.0% | |
| GACAAGAATGAAGATGATAA+GGG | - | chr7_3:67458410-67458429 | Msa1118710:intron | 30.0% | |
| GGATAAGAAAGAGAAAAAGA+AGG | - | chr7_3:67458469-67458488 | Msa1118710:intron | 30.0% | |
| AAAGAAGGATAAAAATGAGG+AGG | - | chr7_3:67458484-67458503 | Msa1118710:intron | 30.0% | |
| !! | ATCTTCTTTTTCACATTTCG+CGG | + | chr7_3:67458564-67458583 | None:intergenic | 30.0% |
| ! | ATCCTCAATCTTGATTTGAG+TGG | + | chr7_3:67457990-67458009 | None:intergenic | 35.0% |
| AAGATTGAGGATAAATCTGC+AGG | - | chr7_3:67457998-67458017 | Msa1118710:CDS | 35.0% | |
| AGGTGGTGTAAAAGAAGATA+AGG | - | chr7_3:67458018-67458037 | Msa1118710:CDS | 35.0% | |
| GGTTGAGATAGAAAAAGATC+TGG | - | chr7_3:67458039-67458058 | Msa1118710:CDS | 35.0% | |
| AGATAAAGATGGGGAGAAAA+AGG | - | chr7_3:67458102-67458121 | Msa1118710:CDS | 35.0% | |
| ! | AGTTGATGTAGAGAATGTCA+AGG | - | chr7_3:67458251-67458270 | Msa1118710:CDS | 35.0% |
| GTTGATGTAGAGAATGTCAA+GGG | - | chr7_3:67458252-67458271 | Msa1118710:CDS | 35.0% | |
| ! | AGAAGATGGTGATGAAAAGA+AGG | - | chr7_3:67458278-67458297 | Msa1118710:CDS | 35.0% |
| ! | TGGTGATGAAAAGAAGGATA+AGG | - | chr7_3:67458284-67458303 | Msa1118710:CDS | 35.0% |
| GAAAAAGGAAAAGAAGGAGA+AGG | - | chr7_3:67458314-67458333 | Msa1118710:CDS | 35.0% | |
| AAAGAAGATGGAGACAAAGA+TGG | - | chr7_3:67458339-67458358 | Msa1118710:CDS | 35.0% | |
| AGAAAGACAAGGAGAAGAAA+AGG | - | chr7_3:67458379-67458398 | Msa1118710:intron | 35.0% | |
| AGGAGAAGAAAAGGAAAAGA+AGG | - | chr7_3:67458388-67458407 | Msa1118710:intron | 35.0% | |
| GGACAAGAATGAAGATGATA+AGG | - | chr7_3:67458409-67458428 | Msa1118710:intron | 35.0% | |
| GAAGAGAAGAAGAAGAAATC+TGG | - | chr7_3:67458629-67458648 | Msa1118710:CDS | 35.0% | |
| GAAGAAGAAGAAATCTGGAA+AGG | - | chr7_3:67458634-67458653 | Msa1118710:CDS | 35.0% | |
| TTTCAGCTTACTAGGATCAT+TGG | + | chr7_3:67458666-67458685 | None:intergenic | 35.0% | |
| AAAAGAAGGCTGATCTAGAA+AGG | - | chr7_3:67458729-67458748 | Msa1118710:CDS | 35.0% | |
| CTAGAAAGGCAGATTAAAGA+AGG | - | chr7_3:67458743-67458762 | Msa1118710:CDS | 35.0% | |
| CAGATTAAAGAAGGTGAAGA+TGG | - | chr7_3:67458752-67458771 | Msa1118710:CDS | 35.0% | |
| ATTAAAGAAGGTGAAGATGG+AGG | - | chr7_3:67458755-67458774 | Msa1118710:CDS | 35.0% | |
| AGGTCAAGATATTAACGTGA+AGG | - | chr7_3:67458775-67458794 | Msa1118710:CDS | 35.0% | |
| ! | ATCCTCAATCTTGATTTGAG+TGG | + | chr7_3:67457990-67458009 | None:intergenic | 35.0% |
| AAGATTGAGGATAAATCTGC+AGG | - | chr7_3:67457998-67458017 | Msa1118710:CDS | 35.0% | |
| AGGTGGTGTAAAAGAAGATA+AGG | - | chr7_3:67458018-67458037 | Msa1118710:CDS | 35.0% | |
| GGTTGAGATAGAAAAAGATC+TGG | - | chr7_3:67458039-67458058 | Msa1118710:CDS | 35.0% | |
| AGATAAAGATGGGGAGAAAA+AGG | - | chr7_3:67458102-67458121 | Msa1118710:CDS | 35.0% | |
| ! | AGTTGATGTAGAGAATGTCA+AGG | - | chr7_3:67458251-67458270 | Msa1118710:CDS | 35.0% |
| GTTGATGTAGAGAATGTCAA+GGG | - | chr7_3:67458252-67458271 | Msa1118710:CDS | 35.0% | |
| ! | AGAAGATGGTGATGAAAAGA+AGG | - | chr7_3:67458278-67458297 | Msa1118710:CDS | 35.0% |
| ! | TGGTGATGAAAAGAAGGATA+AGG | - | chr7_3:67458284-67458303 | Msa1118710:CDS | 35.0% |
| GAAAAAGGAAAAGAAGGAGA+AGG | - | chr7_3:67458314-67458333 | Msa1118710:CDS | 35.0% | |
| AAAGAAGATGGAGACAAAGA+TGG | - | chr7_3:67458339-67458358 | Msa1118710:CDS | 35.0% | |
| AGAAAGACAAGGAGAAGAAA+AGG | - | chr7_3:67458379-67458398 | Msa1118710:intron | 35.0% | |
| AGGAGAAGAAAAGGAAAAGA+AGG | - | chr7_3:67458388-67458407 | Msa1118710:intron | 35.0% | |
| GGACAAGAATGAAGATGATA+AGG | - | chr7_3:67458409-67458428 | Msa1118710:intron | 35.0% | |
| GAAGAGAAGAAGAAGAAATC+TGG | - | chr7_3:67458629-67458648 | Msa1118710:CDS | 35.0% | |
| GAAGAAGAAGAAATCTGGAA+AGG | - | chr7_3:67458634-67458653 | Msa1118710:CDS | 35.0% | |
| TTTCAGCTTACTAGGATCAT+TGG | + | chr7_3:67458666-67458685 | None:intergenic | 35.0% | |
| AAAAGAAGGCTGATCTAGAA+AGG | - | chr7_3:67458729-67458748 | Msa1118710:CDS | 35.0% | |
| CTAGAAAGGCAGATTAAAGA+AGG | - | chr7_3:67458743-67458762 | Msa1118710:CDS | 35.0% | |
| CAGATTAAAGAAGGTGAAGA+TGG | - | chr7_3:67458752-67458771 | Msa1118710:CDS | 35.0% | |
| ATTAAAGAAGGTGAAGATGG+AGG | - | chr7_3:67458755-67458774 | Msa1118710:CDS | 35.0% | |
| AGGTCAAGATATTAACGTGA+AGG | - | chr7_3:67458775-67458794 | Msa1118710:CDS | 35.0% | |
| CTCCACTCAAATCAAGATTG+AGG | - | chr7_3:67457985-67458004 | Msa1118710:CDS | 40.0% | |
| ATTGAGGATAAATCTGCAGG+TGG | - | chr7_3:67458001-67458020 | Msa1118710:CDS | 40.0% | |
| TGGGGAGAAAAAGGAAAAGA+AGG | - | chr7_3:67458111-67458130 | Msa1118710:CDS | 40.0% | |
| GAAGGATAAGGAGAAGAAGA+AGG | - | chr7_3:67458129-67458148 | Msa1118710:CDS | 40.0% | |
| GGAGAAGAAGAAGGAAAAGA+AGG | - | chr7_3:67458138-67458157 | Msa1118710:CDS | 40.0% | |
| GAAGGACAAAACTGATGTAG+AGG | - | chr7_3:67458156-67458175 | Msa1118710:CDS | 40.0% | |
| CAAAACTGATGTAGAGGAGA+AGG | - | chr7_3:67458162-67458181 | Msa1118710:CDS | 40.0% | |
| TGTAGAGGAGAAGGAAAATG+AGG | - | chr7_3:67458171-67458190 | Msa1118710:CDS | 40.0% | |
| GTAGAGGAGAAGGAAAATGA+GGG | - | chr7_3:67458172-67458191 | Msa1118710:CDS | 40.0% | |
| AAATGAGGGCAAGGATAAGA+AGG | - | chr7_3:67458186-67458205 | Msa1118710:CDS | 40.0% | |
| GGACAAGGAGAAGAAGAAAA+AGG | - | chr7_3:67458207-67458226 | Msa1118710:CDS | 40.0% | |
| AATGTCAAGGGTGAAGAAGA+TGG | - | chr7_3:67458264-67458283 | Msa1118710:CDS | 40.0% | |
| AAGGAGAAGGGAAAAGAAGA+TGG | - | chr7_3:67458327-67458346 | Msa1118710:CDS | 40.0% | |
| GAATGAAGATGATAAGGGTG+AGG | - | chr7_3:67458415-67458434 | Msa1118710:intron | 40.0% | |
| GAAGGATAAAAATGAGGAGG+AGG | - | chr7_3:67458487-67458506 | Msa1118710:intron | 40.0% | |
| ! | AAGAGGGCAAAGTATCTGTA+AGG | - | chr7_3:67458519-67458538 | Msa1118710:intron | 40.0% |
| ! | AGAGGGCAAAGTATCTGTAA+GGG | - | chr7_3:67458520-67458539 | Msa1118710:intron | 40.0% |
| AGCTTCTGTTTCAGCTTACT+AGG | + | chr7_3:67458674-67458693 | None:intergenic | 40.0% | |
| !! | TGCAAAGTTAGAAGCACTCT+TGG | - | chr7_3:67458706-67458725 | Msa1118710:CDS | 40.0% |
| !! | AGAAGCACTCTTGGAAAAGA+AGG | - | chr7_3:67458715-67458734 | Msa1118710:CDS | 40.0% |
| CTCCACTCAAATCAAGATTG+AGG | - | chr7_3:67457985-67458004 | Msa1118710:CDS | 40.0% | |
| ATTGAGGATAAATCTGCAGG+TGG | - | chr7_3:67458001-67458020 | Msa1118710:CDS | 40.0% | |
| TGGGGAGAAAAAGGAAAAGA+AGG | - | chr7_3:67458111-67458130 | Msa1118710:CDS | 40.0% | |
| GAAGGATAAGGAGAAGAAGA+AGG | - | chr7_3:67458129-67458148 | Msa1118710:CDS | 40.0% | |
| GGAGAAGAAGAAGGAAAAGA+AGG | - | chr7_3:67458138-67458157 | Msa1118710:CDS | 40.0% | |
| GAAGGACAAAACTGATGTAG+AGG | - | chr7_3:67458156-67458175 | Msa1118710:CDS | 40.0% | |
| CAAAACTGATGTAGAGGAGA+AGG | - | chr7_3:67458162-67458181 | Msa1118710:CDS | 40.0% | |
| TGTAGAGGAGAAGGAAAATG+AGG | - | chr7_3:67458171-67458190 | Msa1118710:CDS | 40.0% | |
| GTAGAGGAGAAGGAAAATGA+GGG | - | chr7_3:67458172-67458191 | Msa1118710:CDS | 40.0% | |
| AAATGAGGGCAAGGATAAGA+AGG | - | chr7_3:67458186-67458205 | Msa1118710:CDS | 40.0% | |
| GGACAAGGAGAAGAAGAAAA+AGG | - | chr7_3:67458207-67458226 | Msa1118710:CDS | 40.0% | |
| AATGTCAAGGGTGAAGAAGA+TGG | - | chr7_3:67458264-67458283 | Msa1118710:CDS | 40.0% | |
| AAGGAGAAGGGAAAAGAAGA+TGG | - | chr7_3:67458327-67458346 | Msa1118710:CDS | 40.0% | |
| GAATGAAGATGATAAGGGTG+AGG | - | chr7_3:67458415-67458434 | Msa1118710:intron | 40.0% | |
| GAAGGATAAAAATGAGGAGG+AGG | - | chr7_3:67458487-67458506 | Msa1118710:intron | 40.0% | |
| ! | AAGAGGGCAAAGTATCTGTA+AGG | - | chr7_3:67458519-67458538 | Msa1118710:intron | 40.0% |
| ! | AGAGGGCAAAGTATCTGTAA+GGG | - | chr7_3:67458520-67458539 | Msa1118710:intron | 40.0% |
| AGCTTCTGTTTCAGCTTACT+AGG | + | chr7_3:67458674-67458693 | None:intergenic | 40.0% | |
| !! | TGCAAAGTTAGAAGCACTCT+TGG | - | chr7_3:67458706-67458725 | Msa1118710:CDS | 40.0% |
| !! | AGAAGCACTCTTGGAAAAGA+AGG | - | chr7_3:67458715-67458734 | Msa1118710:CDS | 40.0% |
| GATAAGGGTGAGGATGTTGA+TGG | - | chr7_3:67458425-67458444 | Msa1118710:intron | 45.0% | |
| GAGGAGGATGAGAAAGAAGA+GGG | - | chr7_3:67458503-67458522 | Msa1118710:intron | 45.0% | |
| GATAAGGGTGAGGATGTTGA+TGG | - | chr7_3:67458425-67458444 | Msa1118710:intron | 45.0% | |
| GAGGAGGATGAGAAAGAAGA+GGG | - | chr7_3:67458503-67458522 | Msa1118710:intron | 45.0% | |
| GGAGAAGGAAAATGAGGGCA+AGG | - | chr7_3:67458177-67458196 | Msa1118710:CDS | 50.0% | |
| GGGCAAGGATAAGAAGGACA+AGG | - | chr7_3:67458192-67458211 | Msa1118710:CDS | 50.0% | |
| GGAGGAGGATGAGAAAGAAG+AGG | - | chr7_3:67458502-67458521 | Msa1118710:intron | 50.0% | |
| GGAGAAGGAAAATGAGGGCA+AGG | - | chr7_3:67458177-67458196 | Msa1118710:CDS | 50.0% | |
| GGGCAAGGATAAGAAGGACA+AGG | - | chr7_3:67458192-67458211 | Msa1118710:CDS | 50.0% | |
| GGAGGAGGATGAGAAAGAAG+AGG | - | chr7_3:67458502-67458521 | Msa1118710:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 67457977 | 67458805 | 67457977 | ID=Msa1118710;Name=Msa1118710 |
| chr7_3 | mRNA | 67457977 | 67458805 | 67457977 | ID=Msa1118710-mRNA-1;Parent=Msa1118710;Name=Msa1118710-mRNA-1;_AED=0.21;_eAED=0.26;_QI=0|0|0|1|1|1|2|0|231 |
| chr7_3 | exon | 67458531 | 67458805 | 67458531 | ID=Msa1118710-mRNA-1:exon:16608;Parent=Msa1118710-mRNA-1 |
| chr7_3 | exon | 67457977 | 67458397 | 67457977 | ID=Msa1118710-mRNA-1:exon:16607;Parent=Msa1118710-mRNA-1 |
| chr7_3 | CDS | 67458531 | 67458805 | 67458531 | ID=Msa1118710-mRNA-1:cds;Parent=Msa1118710-mRNA-1 |
| chr7_3 | CDS | 67457977 | 67458397 | 67457977 | ID=Msa1118710-mRNA-1:cds;Parent=Msa1118710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
