AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0546570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0546570 MtrunA17_Chr4g0028231 99.559 227 1 0 1 227 1 227 1.14e-162 448
Msa0546570 MtrunA17_Chr1g0183621 31.892 185 126 0 1 185 1 185 1.18e-25 99.8
Msa0546570 MtrunA17_Chr2g0303251 29.730 222 148 1 5 226 1 214 4.89e-21 87.4
Msa0546570 MtrunA17_Chr7g0261511 32.018 228 133 4 5 227 1 211 1.35e-18 80.9
Msa0546570 MtrunA17_Chr2g0300321 28.634 227 146 5 7 226 4 221 5.15e-15 71.2
Msa0546570 MtrunA17_Chr8g0343561 27.684 177 126 2 7 182 4 179 1.40e-14 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0546570 AT5G22950.1 82.969 229 37 1 1 227 1 229 4.32e-126 356
Msa0546570 AT3G45000.1 72.362 199 53 1 31 227 2 200 1.04e-87 258
Msa0546570 AT3G45000.2 76.259 139 31 1 91 227 1 139 6.56e-59 182
Msa0546570 AT1G03950.1 31.532 222 140 3 5 226 1 210 1.05e-28 107
Msa0546570 AT5G44560.1 29.834 181 127 0 5 185 1 181 9.37e-21 87.0
Msa0546570 AT5G44560.4 29.213 178 126 0 5 182 1 178 6.22e-20 84.3
Msa0546570 AT2G06530.1 29.362 235 142 7 4 226 1 223 6.92e-17 77.0
Msa0546570 AT5G44560.2 28.662 157 112 0 29 185 5 161 1.19e-14 70.5
Msa0546570 AT2G06530.2 28.638 213 129 6 25 226 2 202 9.17e-13 65.5
Msa0546570 AT5G44560.3 30.534 131 91 0 5 135 1 131 1.04e-12 64.3

Find 61 sgRNAs with CRISPR-Local

Find 329 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCAATAACTGTTGCGGATT+TGG 0.126196 4_1:-38389546 None:intergenic
ATTATATATACAAAATAAAA+TGG 0.182644 4_1:-38389473 None:intergenic
AAGAAGAAATGGAAGAAATT+AGG 0.185877 4_1:+38393720 Msa0546570:CDS
ACTCTCTTATAATATATATC+AGG 0.254147 4_1:-38393890 None:intergenic
TGCATAGCAACAGCCATTTC+AGG 0.256684 4_1:-38393272 None:intergenic
GAATGAAAATTAATTATTCT+TGG 0.264027 4_1:-38389432 None:intergenic
CGCAACAGTTATTGCGAGAT+TGG 0.304376 4_1:+38389553 Msa0546570:CDS
AACTGTTGCGGATTTGGTTT+CGG 0.312520 4_1:-38389540 None:intergenic
CCCATTTGTAATATTAGTAT+TGG 0.323850 4_1:+38393930 Msa0546570:three_prime_UTR
TCCAATACTAATATTACAAA+TGG 0.345851 4_1:-38393931 None:intergenic
AATACGCGTGACAGATAAAA+AGG 0.346488 4_1:+38389275 Msa0546570:five_prime_UTR
TTATATATACAAAATAAAAT+GGG 0.355594 4_1:-38389472 None:intergenic
GAACCGTCTGCATGAAAATA+AGG 0.358366 4_1:+38390938 Msa0546570:CDS
TGACCTGACTTTAGCGAGTC+TGG 0.371271 4_1:-38393744 None:intergenic
AGAAGAAATGGAAGAAATTA+GGG 0.376649 4_1:+38393721 Msa0546570:CDS
CTACAGAACTTGTGAGATCT+AGG 0.401420 4_1:+38390907 Msa0546570:CDS
TCATAAACGAGTTTCTAAAA+AGG 0.417167 4_1:+38393764 Msa0546570:exon
TGTAATATTAGTATTGGAAA+AGG 0.419711 4_1:+38393936 Msa0546570:three_prime_UTR
CCTCATGAAGGCTCCTGAAA+TGG 0.421101 4_1:+38393259 Msa0546570:CDS
TCCTCTGCGGCACTTTGAGC+AGG 0.453503 4_1:-38393580 None:intergenic
TTCAGCAATTGCTCGTACTG+TGG 0.454062 4_1:+38393193 Msa0546570:intron
CATATTAGCTATGATGCCAT+TGG 0.473050 4_1:-38393969 None:intergenic
GGAATATAAATTATCGAAGA+AGG 0.474281 4_1:-38389379 None:intergenic
TGATTTAGATATTCAGAGAG+AGG 0.474813 4_1:+38389719 Msa0546570:intron
TGTTGATGATGAAGAAGAAA+TGG 0.478357 4_1:+38393709 Msa0546570:CDS
TTCTTCATCATCAACACCCT+CGG 0.485224 4_1:-38393702 None:intergenic
CCAATACTAATATTACAAAT+GGG 0.494913 4_1:-38393930 None:intergenic
GTTTCAGGCAGGAGTAATTG+AGG 0.506660 4_1:+38393408 Msa0546570:intron
GGGCCAGACTCGCTAAAGTC+AGG 0.512607 4_1:+38393741 Msa0546570:CDS
CTATTAAAGAAGCTGCTAAG+AGG 0.518339 4_1:+38389760 Msa0546570:CDS
AAAGTCTTAACTGAATTAGC+TGG 0.521196 4_1:+38393505 Msa0546570:CDS
GGTGGGTGTGTTCTTCGTAA+AGG 0.525188 4_1:+38389311 Msa0546570:five_prime_UTR
TCAGCAATTGCTCGTACTGT+GGG 0.530452 4_1:+38393194 Msa0546570:intron
AACATTGAACGACAAATTCG+CGG 0.539995 4_1:+38389603 Msa0546570:CDS
TGAAGCTGTGAGGAAACAAA+AGG 0.551851 4_1:+38393549 Msa0546570:CDS
CAATCTCGCAATAACTGTTG+CGG 0.559721 4_1:-38389552 None:intergenic
AAAGGAGAAGATATTGAAGG+TGG 0.564984 4_1:+38389293 Msa0546570:five_prime_UTR
AAAAGGTGACTTATTACCAA+TGG 0.570569 4_1:+38393953 Msa0546570:three_prime_UTR
TGCTCAAAGTGCCGCAGAGG+AGG 0.582103 4_1:+38393582 Msa0546570:CDS
CTCTCTTATAATATATATCA+GGG 0.589567 4_1:-38393889 None:intergenic
AACTCAATATCAATGCACCT+TGG 0.594406 4_1:+38390969 Msa0546570:CDS
ACCTGCTCAAAGTGCCGCAG+AGG 0.595296 4_1:+38393579 Msa0546570:CDS
TATATATACAAAATAAAATG+GGG 0.596746 4_1:-38389471 None:intergenic
TGACTCAGCATTAGATTCTG+AGG 0.600712 4_1:+38393450 Msa0546570:CDS
TGAAGATTAGATCTTACTGA+AGG 0.602356 4_1:-38389400 None:intergenic
CAGGAAGATGCTATAGCCGA+GGG 0.609938 4_1:+38393686 Msa0546570:intron
GCTTGTCAATAACCTCATGA+AGG 0.612171 4_1:+38393247 Msa0546570:CDS
ACCTACCAACACTTTCTCCA+AGG 0.615558 4_1:-38390986 None:intergenic
CCATTTCAGGAGCCTTCATG+AGG 0.615981 4_1:-38393259 None:intergenic
GAATGACATTGGTTCTGCAA+AGG 0.618815 4_1:+38389782 Msa0546570:CDS
AAGGAGAAGATATTGAAGGT+GGG 0.620093 4_1:+38389294 Msa0546570:five_prime_UTR
GCAGGAAGATGCTATAGCCG+AGG 0.620355 4_1:+38393685 Msa0546570:intron
ATGCACCTTGGAGAAAGTGT+TGG 0.628455 4_1:+38390981 Msa0546570:CDS
ATTGACAAGCTTCATAACCT+CGG 0.641959 4_1:-38393234 None:intergenic
TATATCAGGGCACAATGCAG+AGG 0.655974 4_1:-38393876 None:intergenic
CACAACTTCCTGAAGCTGTG+AGG 0.670413 4_1:+38393539 Msa0546570:CDS
AACTGCATGTACCTCCTCTG+CGG 0.671034 4_1:-38393593 None:intergenic
GCTGCTAAGAGGAATGACAT+TGG 0.677222 4_1:+38389771 Msa0546570:CDS
CACAGCTTCAGGAAGTTGTG+CGG 0.680019 4_1:-38393536 None:intergenic
ACATCTATCAAAGAGTGCCG+AGG 0.689000 4_1:+38393217 Msa0546570:CDS
GTTCAGCAAAGAAATGACCA+AGG 0.706921 4_1:+38393298 Msa0546570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTATTT+TGG + chr4_1:38390382-38390401 Msa0546570:intron 0.0%
!!! TTTTTTTTTTTTTTTATTTT+GGG + chr4_1:38390383-38390402 Msa0546570:intron 0.0%
!! TATATATACAAAATAAAATG+GGG - chr4_1:38389474-38389493 None:intergenic 10.0%
!!! ATATTTTTTAATCTTTACAA+TGG + chr4_1:38392370-38392389 Msa0546570:intron 10.0%
!! GAATGAAAATTAATTATTCT+TGG - chr4_1:38389435-38389454 None:intergenic 15.0%
!!! TTTTATTCTTAAATTACTAC+AGG - chr4_1:38389867-38389886 None:intergenic 15.0%
!!! TTTTTAATAAAGAGTATGTT+TGG - chr4_1:38391244-38391263 None:intergenic 15.0%
!!! ATTTTATCTATAGTTTTTTG+AGG + chr4_1:38391651-38391670 Msa0546570:intron 15.0%
!! CTTATAATAATTAGCTATTA+AGG - chr4_1:38392167-38392186 None:intergenic 15.0%
!!! TTTTAAGAGAGATCAAAAAA+TGG - chr4_1:38389635-38389654 None:intergenic 20.0%
!!! TAAGAATAAAATTAGCTTAG+TGG + chr4_1:38389876-38389895 Msa0546570:intron 20.0%
!! GTTTCTCTTAAAAAATTTCT+AGG - chr4_1:38390117-38390136 None:intergenic 20.0%
!! AAATTTAGTGATTAATGAGT+TGG + chr4_1:38390146-38390165 Msa0546570:intron 20.0%
!!! GTTTTATCATAAACCATATT+TGG - chr4_1:38390174-38390193 None:intergenic 20.0%
!! TATGGTTTATGATAAAACAT+AGG + chr4_1:38390176-38390195 Msa0546570:intron 20.0%
!! ATGGTTTATGATAAAACATA+GGG + chr4_1:38390177-38390196 Msa0546570:intron 20.0%
!!! AGTGTATATACAAGTTTTTA+TGG + chr4_1:38390570-38390589 Msa0546570:intron 20.0%
!! AAAATCTAATATCCTTATCA+TGG + chr4_1:38390859-38390878 Msa0546570:intron 20.0%
!!! ATGATCAAATGTTTTGTTTA+TGG + chr4_1:38391399-38391418 Msa0546570:intron 20.0%
!!! TGATCAAATGTTTTGTTTAT+GGG + chr4_1:38391400-38391419 Msa0546570:intron 20.0%
!!! ATTTTATCTATAGGTTTTTG+AGG + chr4_1:38391449-38391468 Msa0546570:intron 20.0%
!!! TATGATGTTTTACAATTATC+AGG + chr4_1:38392449-38392468 Msa0546570:intron 20.0%
!! TCTTATCTCAAGTATTTATT+TGG + chr4_1:38392972-38392991 Msa0546570:intron 20.0%
!!! TGATCAATGACTAATTTTAA+AGG - chr4_1:38393126-38393145 None:intergenic 20.0%
!! GTTAATTGCATGATAATTAT+TGG + chr4_1:38393374-38393393 Msa0546570:intron 20.0%
!! CTCTCTTATAATATATATCA+GGG - chr4_1:38393892-38393911 None:intergenic 20.0%
!! ACTCTCTTATAATATATATC+AGG - chr4_1:38393893-38393912 None:intergenic 20.0%
!! CCAATACTAATATTACAAAT+GGG - chr4_1:38393933-38393952 None:intergenic 20.0%
!! TCCAATACTAATATTACAAA+TGG - chr4_1:38393934-38393953 None:intergenic 20.0%
!!! TGTAATATTAGTATTGGAAA+AGG + chr4_1:38393936-38393955 Msa0546570:three_prime_UTR 20.0%
! TAAAAAGGAGAAGATATTGA+AGG + chr4_1:38389290-38389309 Msa0546570:five_prime_UTR 25.0%
! GGAATATAAATTATCGAAGA+AGG - chr4_1:38389382-38389401 None:intergenic 25.0%
!!! ATAAAATGGGGATTTTTTGA+AGG - chr4_1:38389462-38389481 None:intergenic 25.0%
! GAAGAATCAAGTATCAATTA+GGG - chr4_1:38389658-38389677 None:intergenic 25.0%
! AGAAGAATCAAGTATCAATT+AGG - chr4_1:38389659-38389678 None:intergenic 25.0%
! TTGATTCTTCTGATTATTTG+TGG + chr4_1:38389668-38389687 Msa0546570:intron 25.0%
! TGATTATTTGTGGTTATGAT+TGG + chr4_1:38389678-38389697 Msa0546570:intron 25.0%
!!! TTCATAACCAATGCTATTTT+TGG + chr4_1:38390746-38390765 Msa0546570:intron 25.0%
!!! GTCTTCTTTTTTAGATTTCA+AGG + chr4_1:38390797-38390816 Msa0546570:intron 25.0%
! ATTGAACAAATACCATGATA+AGG - chr4_1:38390874-38390893 None:intergenic 25.0%
! ATGGTATTTGTTCAATTTAC+AGG + chr4_1:38390878-38390897 Msa0546570:intron 25.0%
!! TAGTTTTTGCAAAATCACAA+TGG - chr4_1:38391093-38391112 None:intergenic 25.0%
!! CACAACTTTTGATAAAATCA+CGG + chr4_1:38391183-38391202 Msa0546570:intron 25.0%
! ATTCAACTTAGTTAACAAGA+GGG - chr4_1:38391347-38391366 None:intergenic 25.0%
! TATTCAACTTAGTTAACAAG+AGG - chr4_1:38391348-38391367 None:intergenic 25.0%
!! TCTTGTTAACTAAGTTGAAT+AGG + chr4_1:38391347-38391366 Msa0546570:intron 25.0%
!!! GATCAAATGTTTTGTTTATG+GGG + chr4_1:38391401-38391420 Msa0546570:intron 25.0%
!! TGTCTATGGATTTTATCTAT+AGG + chr4_1:38391440-38391459 Msa0546570:intron 25.0%
!! CATGATTGTTTCATTTTAGA+AGG + chr4_1:38392290-38392309 Msa0546570:intron 25.0%
! AATTATTCTCTTCTTGAATG+TGG - chr4_1:38392533-38392552 None:intergenic 25.0%
! AGAAGAGAATAATTCAGTAA+AGG + chr4_1:38392539-38392558 Msa0546570:intron 25.0%
! GAAGAGAATAATTCAGTAAA+GGG + chr4_1:38392540-38392559 Msa0546570:intron 25.0%
! AAGAGAATAATTCAGTAAAG+GGG + chr4_1:38392541-38392560 Msa0546570:intron 25.0%
! AGCCAAATAACTAATTTAAC+AGG + chr4_1:38392576-38392595 Msa0546570:intron 25.0%
! CTCCTGTTAAATTAGTTATT+TGG - chr4_1:38392581-38392600 None:intergenic 25.0%
! CAAATAACTAATTTAACAGG+AGG + chr4_1:38392579-38392598 Msa0546570:intron 25.0%
!! TGATTTTCATACAAAGGATT+AGG - chr4_1:38392761-38392780 None:intergenic 25.0%
!! TAACTGTGATTTTCATACAA+AGG - chr4_1:38392767-38392786 None:intergenic 25.0%
! GTATGAAAATCACAGTTAAA+TGG + chr4_1:38392769-38392788 Msa0546570:intron 25.0%
!!! TGCATTTTTAGGTTTTACTT+TGG + chr4_1:38392833-38392852 Msa0546570:intron 25.0%
!!! GCATTTTTAGGTTTTACTTT+GGG + chr4_1:38392834-38392853 Msa0546570:intron 25.0%
!!! CATTTTTAGGTTTTACTTTG+GGG + chr4_1:38392835-38392854 Msa0546570:intron 25.0%
! CATAATATAGTCATTGTACA+AGG - chr4_1:38392998-38393017 None:intergenic 25.0%
!! TTGATAATAGAACTGTTCAT+TGG + chr4_1:38393147-38393166 Msa0546570:intron 25.0%
!! TCATTGGAAATTCCTAATTT+TGG + chr4_1:38393163-38393182 Msa0546570:intron 25.0%
! AAGAAGAAATGGAAGAAATT+AGG + chr4_1:38393720-38393739 Msa0546570:CDS 25.0%
! AGAAGAAATGGAAGAAATTA+GGG + chr4_1:38393721-38393740 Msa0546570:CDS 25.0%
!! TCATAAACGAGTTTCTAAAA+AGG + chr4_1:38393764-38393783 Msa0546570:exon 25.0%
! TCATAAAAAGTTCTACTTTC+TGG + chr4_1:38393840-38393859 Msa0546570:three_prime_UTR 25.0%
! CCCATTTGTAATATTAGTAT+TGG + chr4_1:38393930-38393949 Msa0546570:three_prime_UTR 25.0%
TGAAGATTAGATCTTACTGA+AGG - chr4_1:38389403-38389422 None:intergenic 30.0%
!!! ATTTTGGGATCAGTGAAAAA+TGG + chr4_1:38389494-38389513 Msa0546570:exon 30.0%
TGATTTAGATATTCAGAGAG+AGG + chr4_1:38389719-38389738 Msa0546570:intron 30.0%
AGTAAGGAGTTTAGATTAGA+TGG + chr4_1:38390059-38390078 Msa0546570:intron 30.0%
! TAATGAGTTGGATCCAAATA+TGG + chr4_1:38390158-38390177 Msa0546570:intron 30.0%
GTACAAACCAAAAATAGCAT+TGG - chr4_1:38390756-38390775 None:intergenic 30.0%
!!! ATGCTATTTTTGGTTTGTAC+TGG + chr4_1:38390756-38390775 Msa0546570:intron 30.0%
AAAAAAGAAGACTGCCTAAA+AGG - chr4_1:38390789-38390808 None:intergenic 30.0%
AAGGTTCGATAGAATAAAGT+AGG + chr4_1:38390816-38390835 Msa0546570:intron 30.0%
TATCAAAAGTTGTGCAAGTT+TGG - chr4_1:38391177-38391196 None:intergenic 30.0%
!!! TCTATAGTTTTTTGAGGTTG+AGG + chr4_1:38391657-38391676 Msa0546570:intron 30.0%
!!! CTATAGTTTTTTGAGGTTGA+GGG + chr4_1:38391658-38391677 Msa0546570:intron 30.0%
CAACATAAATGTTTCACTCT+TGG + chr4_1:38391711-38391730 Msa0546570:intron 30.0%
TATCTTAACATGCTATAGCT+AGG + chr4_1:38391754-38391773 Msa0546570:intron 30.0%
! TTCTCTTTTTCTTATGCCTT+GGG - chr4_1:38391988-38392007 None:intergenic 30.0%
! TTTCTCTTTTTCTTATGCCT+TGG - chr4_1:38391989-38392008 None:intergenic 30.0%
! CAAGCTGAATTTTATTCATG+AGG + chr4_1:38392046-38392065 Msa0546570:intron 30.0%
!! ATTTTATTCATGAGGCATTC+TGG + chr4_1:38392054-38392073 Msa0546570:intron 30.0%
!! TTTTATTCATGAGGCATTCT+GGG + chr4_1:38392055-38392074 Msa0546570:intron 30.0%
!!! CTTTTGATTTGTAACTACAC+AGG + chr4_1:38392231-38392250 Msa0546570:intron 30.0%
!! TTTCTTTTGAGAAGATGAAG+CGG + chr4_1:38392329-38392348 Msa0546570:intron 30.0%
AACATAGAATGACATTGACA+AGG + chr4_1:38392415-38392434 Msa0546570:intron 30.0%
ACATAGAATGACATTGACAA+GGG + chr4_1:38392416-38392435 Msa0546570:intron 30.0%
TTATACAAAATGAACCTTGC+TGG - chr4_1:38392704-38392723 None:intergenic 30.0%
CAAATTAAAACAGGAAGAGA+GGG + chr4_1:38392897-38392916 Msa0546570:intron 30.0%
AAATTAAAACAGGAAGAGAG+GGG + chr4_1:38392898-38392917 Msa0546570:intron 30.0%
AATTAACTTCTATGACTACG+GGG - chr4_1:38393361-38393380 None:intergenic 30.0%
CAATTAACTTCTATGACTAC+GGG - chr4_1:38393362-38393381 None:intergenic 30.0%
GCAATTAACTTCTATGACTA+CGG - chr4_1:38393363-38393382 None:intergenic 30.0%
!! TTGGTAATGTATTCTGTTTC+AGG + chr4_1:38393393-38393412 Msa0546570:intron 30.0%
AAAGTCTTAACTGAATTAGC+TGG + chr4_1:38393505-38393524 Msa0546570:CDS 30.0%
AGTTCAATTTCCTGTTAACA+AGG + chr4_1:38393612-38393631 Msa0546570:intron 30.0%
TGGAATGCATTATTATTTGC+AGG + chr4_1:38393667-38393686 Msa0546570:intron 30.0%
!! TGTTGATGATGAAGAAGAAA+TGG + chr4_1:38393709-38393728 Msa0546570:CDS 30.0%
AAAAGGTGACTTATTACCAA+TGG + chr4_1:38393953-38393972 Msa0546570:three_prime_UTR 30.0%
AATACGCGTGACAGATAAAA+AGG + chr4_1:38389275-38389294 Msa0546570:five_prime_UTR 35.0%
AAAGGAGAAGATATTGAAGG+TGG + chr4_1:38389293-38389312 Msa0546570:five_prime_UTR 35.0%
AAGGAGAAGATATTGAAGGT+GGG + chr4_1:38389294-38389313 Msa0546570:five_prime_UTR 35.0%
!!! ATGGGGATTTTTTGAAGGAT+TGG - chr4_1:38389457-38389476 None:intergenic 35.0%
AACATTGAACGACAAATTCG+CGG + chr4_1:38389603-38389622 Msa0546570:CDS 35.0%
CTATTAAAGAAGCTGCTAAG+AGG + chr4_1:38389760-38389779 Msa0546570:CDS 35.0%
ACCTATAGTAGAAAAGATCG+TGG + chr4_1:38389984-38390003 Msa0546570:intron 35.0%
! TCCACGATCTTTTCTACTAT+AGG - chr4_1:38389988-38390007 None:intergenic 35.0%
! GACGTGTAGATTTTGTAGTA+AGG + chr4_1:38390043-38390062 Msa0546570:intron 35.0%
AAGGAGTTTAGATTAGATGG+AGG + chr4_1:38390062-38390081 Msa0546570:intron 35.0%
CTTATCTCATTAAGTGGGAT+AGG - chr4_1:38390221-38390240 None:intergenic 35.0%
CTATCCCACTTAATGAGATA+AGG + chr4_1:38390219-38390238 Msa0546570:intron 35.0%
! CAAGCCTTATCTCATTAAGT+GGG - chr4_1:38390226-38390245 None:intergenic 35.0%
GTTTCAAAAGGCTAGAAGTT+TGG - chr4_1:38390476-38390495 None:intergenic 35.0%
!!! TTCTAGCCTTTTGAAACAAC+AGG + chr4_1:38390479-38390498 Msa0546570:intron 35.0%
GAAAGACAGTACATTGAATG+AGG - chr4_1:38390522-38390541 None:intergenic 35.0%
! TACCCAATTGAAGGCATATT+CGG + chr4_1:38390627-38390646 Msa0546570:intron 35.0%
AACTCAATATCAATGCACCT+TGG + chr4_1:38390969-38390988 Msa0546570:CDS 35.0%
!! TTTGCCTTAATTTGTCCTCT+TGG + chr4_1:38391024-38391043 Msa0546570:intron 35.0%
AACTACACTTTGTGCATGTT+TGG + chr4_1:38391108-38391127 Msa0546570:intron 35.0%
TGCAAGTTTGGTATCATAAC+TGG - chr4_1:38391165-38391184 None:intergenic 35.0%
! ACGGTAGCTCACTATTATTT+TGG + chr4_1:38391202-38391221 Msa0546570:intron 35.0%
AGTATGTTTGGTATTGCAGT+GGG - chr4_1:38391232-38391251 None:intergenic 35.0%
!!! TCTATAGGTTTTTGAGGTTG+AGG + chr4_1:38391455-38391474 Msa0546570:intron 35.0%
!!! CTATAGGTTTTTGAGGTTGA+GGG + chr4_1:38391456-38391475 Msa0546570:intron 35.0%
AACTGACTGTGATGTTTGTA+TGG + chr4_1:38391482-38391501 Msa0546570:intron 35.0%
TTTCTAAACGTGCTATACCT+AGG + chr4_1:38391552-38391571 Msa0546570:intron 35.0%
TTCTAAACGTGCTATACCTA+GGG + chr4_1:38391553-38391572 Msa0546570:intron 35.0%
TAAAAGAGACCAAACAAGAG+AGG + chr4_1:38391609-38391628 Msa0546570:intron 35.0%
AACTGATTGTGATGTCCATA+TGG + chr4_1:38391684-38391703 Msa0546570:intron 35.0%
CATTTATGTTGCATGCCATA+TGG - chr4_1:38391702-38391721 None:intergenic 35.0%
TATAGCTAGGAACAGGAAAA+GGG + chr4_1:38391767-38391786 Msa0546570:intron 35.0%
TACCTATCTCCAACTCATAT+AGG + chr4_1:38391880-38391899 Msa0546570:intron 35.0%
ACCTATCTCCAACTCATATA+GGG + chr4_1:38391881-38391900 Msa0546570:intron 35.0%
!!! GGGGATAGTTTTATATAACC+AGG + chr4_1:38391914-38391933 Msa0546570:intron 35.0%
GGCATAAGAAAAAGAGAAAG+CGG + chr4_1:38391990-38392009 Msa0546570:intron 35.0%
GCATAAGAAAAAGAGAAAGC+GGG + chr4_1:38391991-38392010 Msa0546570:intron 35.0%
! AATAGCTTGTACGAAGCTTA+TGG + chr4_1:38392195-38392214 Msa0546570:intron 35.0%
! TGATTTGTAACTACACAGGA+TGG + chr4_1:38392235-38392254 Msa0546570:intron 35.0%
GATTTGTAACTACACAGGAT+GGG + chr4_1:38392236-38392255 Msa0546570:intron 35.0%
GCAGACTAAACAATTCCTAT+AGG - chr4_1:38392267-38392286 None:intergenic 35.0%
ATAGGAATTGTTTAGTCTGC+AGG + chr4_1:38392267-38392286 Msa0546570:intron 35.0%
CTTTACAATGGCAGCTATAA+TGG + chr4_1:38392382-38392401 Msa0546570:intron 35.0%
CATAACTGAACTTGACTAGT+AGG + chr4_1:38392486-38392505 Msa0546570:intron 35.0%
AATAATTCAGTAAAGGGGCA+GGG + chr4_1:38392546-38392565 Msa0546570:intron 35.0%
TTAACAGGAGGTAATAGTTG+TGG + chr4_1:38392591-38392610 Msa0546570:intron 35.0%
TAACAGGAGGTAATAGTTGT+GGG + chr4_1:38392592-38392611 Msa0546570:intron 35.0%
AGACAGAATAGAGAGGAAAT+TGG + chr4_1:38392640-38392659 Msa0546570:intron 35.0%
TTTAATTGACACCTCCTTTG+TGG + chr4_1:38392810-38392829 Msa0546570:intron 35.0%
AACCTAAAAATGCACCACAA+AGG - chr4_1:38392827-38392846 None:intergenic 35.0%
! GGGGATAAAATTTTACTGAG+CGG + chr4_1:38392854-38392873 Msa0546570:intron 35.0%
!!! CCTCTCTTCCTGTTTTAATT+TGG - chr4_1:38392899-38392918 None:intergenic 35.0%
CCAAATTAAAACAGGAAGAG+AGG + chr4_1:38392896-38392915 Msa0546570:intron 35.0%
ATTGACAAGCTTCATAACCT+CGG - chr4_1:38393237-38393256 None:intergenic 35.0%
TAATGTATTCTGTTTCAGGC+AGG + chr4_1:38393397-38393416 Msa0546570:intron 35.0%
CATAATTAGTGTGACTTGAG+AGG - chr4_1:38393649-38393668 None:intergenic 35.0%
CTCTCAAGTCACACTAATTA+TGG + chr4_1:38393647-38393666 Msa0546570:intron 35.0%
CATATTAGCTATGATGCCAT+TGG - chr4_1:38393972-38393991 None:intergenic 35.0%
GGATCAGTGAAAAATGGAGA+AGG + chr4_1:38389500-38389519 Msa0546570:exon 40.0%
! AACTGTTGCGGATTTGGTTT+CGG - chr4_1:38389543-38389562 None:intergenic 40.0%
CAATCTCGCAATAACTGTTG+CGG - chr4_1:38389555-38389574 None:intergenic 40.0%
!! GAATGACATTGGTTCTGCAA+AGG + chr4_1:38389782-38389801 Msa0546570:CDS 40.0%
CGTTGGATGTGTTGTAATAC+TGG + chr4_1:38389913-38389932 Msa0546570:intron 40.0%
AGATCGTGGAAGTTATGCTT+AGG + chr4_1:38389998-38390017 Msa0546570:intron 40.0%
! CCAAGCCTTATCTCATTAAG+TGG - chr4_1:38390227-38390246 None:intergenic 40.0%
CCACTTAATGAGATAAGGCT+TGG + chr4_1:38390224-38390243 Msa0546570:intron 40.0%
! AATCACATGTGTCGATGTGT+CGG + chr4_1:38390257-38390276 Msa0546570:intron 40.0%
!! CCAACACCTGTTGTTTCAAA+AGG - chr4_1:38390488-38390507 None:intergenic 40.0%
!!! CCTTTTGAAACAACAGGTGT+TGG + chr4_1:38390485-38390504 Msa0546570:intron 40.0%
CTGTCTTTCTGCTGAATGTA+AGG + chr4_1:38390533-38390552 Msa0546570:intron 40.0%
TCTTTCTGCTGAATGTAAGG+TGG + chr4_1:38390536-38390555 Msa0546570:intron 40.0%
TGCTGAATGTAAGGTGGAAT+AGG + chr4_1:38390542-38390561 Msa0546570:intron 40.0%
GTGATCGGTCTTAACATGTA+TGG - chr4_1:38390602-38390621 None:intergenic 40.0%
GAATATGCCTTCAATTGGGT+AGG - chr4_1:38390628-38390647 None:intergenic 40.0%
CACCGAATATGCCTTCAATT+GGG - chr4_1:38390632-38390651 None:intergenic 40.0%
ACACCGAATATGCCTTCAAT+TGG - chr4_1:38390633-38390652 None:intergenic 40.0%
!! GTACTGGTGTATCACCTTTT+AGG + chr4_1:38390772-38390791 Msa0546570:intron 40.0%
CTACAGAACTTGTGAGATCT+AGG + chr4_1:38390907-38390926 Msa0546570:CDS 40.0%
GAACCGTCTGCATGAAAATA+AGG + chr4_1:38390938-38390957 Msa0546570:CDS 40.0%
!!! GTGCCTTATTTTCATGCAGA+CGG - chr4_1:38390944-38390963 None:intergenic 40.0%
!!! GAGAAAGTGTTGGTAGGTTT+TGG + chr4_1:38390991-38391010 Msa0546570:intron 40.0%
TGCACCAAGAGGACAAATTA+AGG - chr4_1:38391031-38391050 None:intergenic 40.0%
GATATCAAACATGCACCAAG+AGG - chr4_1:38391042-38391061 None:intergenic 40.0%
GTGCATGTTTGATATCACGA+TGG + chr4_1:38391046-38391065 Msa0546570:intron 40.0%
GAGTATGTTTGGTATTGCAG+TGG - chr4_1:38391233-38391252 None:intergenic 40.0%
ATGAAGCACAAGAGCTAACT+TGG - chr4_1:38391271-38391290 None:intergenic 40.0%
TTATGGGGAAAACTCAACTG+CGG + chr4_1:38391416-38391435 Msa0546570:intron 40.0%
AGAGATTGTGTGCAAAGAGT+GGG - chr4_1:38391524-38391543 None:intergenic 40.0%
TAGAGATTGTGTGCAAAGAG+TGG - chr4_1:38391525-38391544 None:intergenic 40.0%
ACTCTTTGCACACAATCTCT+AGG + chr4_1:38391524-38391543 Msa0546570:intron 40.0%
!! TTGCACACAATCTCTAGGAT+TGG + chr4_1:38391529-38391548 Msa0546570:intron 40.0%
TATACCTAGGGACAGGAAAA+GGG + chr4_1:38391565-38391584 Msa0546570:intron 40.0%
AACATGCTATAGCTAGGAAC+AGG + chr4_1:38391760-38391779 Msa0546570:intron 40.0%
CTATAGCTAGGAACAGGAAA+AGG + chr4_1:38391766-38391785 Msa0546570:intron 40.0%
GAAAAGGGTCTTAGCAAAAG+AGG + chr4_1:38391782-38391801 Msa0546570:intron 40.0%
CAAAAAGAAACCAACCGAGA+GGG + chr4_1:38391810-38391829 Msa0546570:intron 40.0%
AAAAAGAAACCAACCGAGAG+GGG + chr4_1:38391811-38391830 Msa0546570:intron 40.0%
CCTATCTCCAACTCATATAG+GGG + chr4_1:38391882-38391901 Msa0546570:intron 40.0%
TCCAACTCATATAGGGGAAA+GGG + chr4_1:38391888-38391907 Msa0546570:intron 40.0%
TCATATAGGGGAAAGGGAAT+GGG + chr4_1:38391894-38391913 Msa0546570:intron 40.0%
AGGCATTCATTCCTTAGTCA+CGG + chr4_1:38391934-38391953 Msa0546570:intron 40.0%
! AGAAAAAGAGAAAGCGGGTT+AGG + chr4_1:38391996-38392015 Msa0546570:intron 40.0%
TTGCAAGTTGCAAGCAACTT+CGG - chr4_1:38392029-38392048 None:intergenic 40.0%
! TGAGGCATTCTGGGTTTATT+TGG + chr4_1:38392064-38392083 Msa0546570:intron 40.0%
! GAGGCATTCTGGGTTTATTT+GGG + chr4_1:38392065-38392084 Msa0546570:intron 40.0%
CATTCTGGGTTTATTTGGGT+TGG + chr4_1:38392069-38392088 Msa0546570:intron 40.0%
CCAACACTAATAGATATGCC+TGG - chr4_1:38392096-38392115 None:intergenic 40.0%
CCAGGCATATCTATTAGTGT+TGG + chr4_1:38392093-38392112 Msa0546570:intron 40.0%
! TTGGCGCTTATGCATGTTTT+TGG + chr4_1:38392112-38392131 Msa0546570:intron 40.0%
! TGGCGCTTATGCATGTTTTT+GGG + chr4_1:38392113-38392132 Msa0546570:intron 40.0%
GTAGGTAAGAAGCCTTTGAT+AGG + chr4_1:38392504-38392523 Msa0546570:intron 40.0%
TGAATGTGGAAGCCTATCAA+AGG - chr4_1:38392519-38392538 None:intergenic 40.0%
GAATAATTCAGTAAAGGGGC+AGG + chr4_1:38392545-38392564 Msa0546570:intron 40.0%
CTATGCAAGACAGAATAGAG+AGG + chr4_1:38392633-38392652 Msa0546570:intron 40.0%
CTAAAAATGCACCACAAAGG+AGG - chr4_1:38392824-38392843 None:intergenic 40.0%
! CTCCTTTGTGGTGCATTTTT+AGG + chr4_1:38392822-38392841 Msa0546570:intron 40.0%
AGTGAGGGCCAAATTAAAAC+AGG + chr4_1:38392888-38392907 Msa0546570:intron 40.0%
CTGAAAAGGCAGCCAAAATT+AGG - chr4_1:38393178-38393197 None:intergenic 40.0%
AGTACGAGCAATTGCTGAAA+AGG - chr4_1:38393192-38393211 None:intergenic 40.0%
GCTTGTCAATAACCTCATGA+AGG + chr4_1:38393247-38393266 Msa0546570:CDS 40.0%
GTTCAGCAAAGAAATGACCA+AGG + chr4_1:38393298-38393317 Msa0546570:CDS 40.0%
! TGAAGTATGAAGGCATACCT+TGG - chr4_1:38393318-38393337 None:intergenic 40.0%
GCAGGAGAAATGAAGTATGA+AGG - chr4_1:38393328-38393347 None:intergenic 40.0%
TGACTCAGCATTAGATTCTG+AGG + chr4_1:38393450-38393469 Msa0546570:CDS 40.0%
!! TTTTGTTTCCTCACAGCTTC+AGG - chr4_1:38393550-38393569 None:intergenic 40.0%
TGAAGCTGTGAGGAAACAAA+AGG + chr4_1:38393549-38393568 Msa0546570:CDS 40.0%
!! GCAAAAAGAGCCTTGTTAAC+AGG - chr4_1:38393625-38393644 None:intergenic 40.0%
TTCTTCATCATCAACACCCT+CGG - chr4_1:38393705-38393724 None:intergenic 40.0%
CGCAATAACTGTTGCGGATT+TGG - chr4_1:38389549-38389568 None:intergenic 45.0%
CGCAACAGTTATTGCGAGAT+TGG + chr4_1:38389553-38389572 Msa0546570:CDS 45.0%
GCTGCTAAGAGGAATGACAT+TGG + chr4_1:38389771-38389790 Msa0546570:CDS 45.0%
TTGAGATCTGTCACTGACAC+CGG + chr4_1:38389823-38389842 Msa0546570:intron 45.0%
TGGAGATGAGAAAGTTGCGT+TGG + chr4_1:38389896-38389915 Msa0546570:intron 45.0%
CGACATTAGAGAGAGAGATC+AGG + chr4_1:38389957-38389976 Msa0546570:intron 45.0%
TCGTGGAAGTTATGCTTAGG+TGG + chr4_1:38390001-38390020 Msa0546570:intron 45.0%
GAGGATAGTCAGATCACTAG+AGG + chr4_1:38390081-38390100 Msa0546570:intron 45.0%
! GCACTGACAGTTCTAATCGA+AGG - chr4_1:38390332-38390351 None:intergenic 45.0%
CAATTGGGTAGGACTGTGAT+CGG - chr4_1:38390617-38390636 None:intergenic 45.0%
TCACAGTCCTACCCAATTGA+AGG + chr4_1:38390618-38390637 Msa0546570:intron 45.0%
!! CATATTCGGTGTCAGACATG+TGG + chr4_1:38390641-38390660 Msa0546570:intron 45.0%
GCTCTGACACACACAAAAAC+AGG - chr4_1:38390726-38390745 None:intergenic 45.0%
! ATGCACCTTGGAGAAAGTGT+TGG + chr4_1:38390981-38391000 Msa0546570:CDS 45.0%
!! ACCTTGGAGAAAGTGTTGGT+AGG + chr4_1:38390985-38391004 Msa0546570:intron 45.0%
ACCTACCAACACTTTCTCCA+AGG - chr4_1:38390989-38391008 None:intergenic 45.0%
GTGCATGTTTGGTATCACAG+TGG + chr4_1:38391119-38391138 Msa0546570:intron 45.0%
!! TAACTGGTTTGCCAGACTCA+CGG - chr4_1:38391149-38391168 None:intergenic 45.0%
GAGATTGTGTGCAAAGAGTG+GGG - chr4_1:38391523-38391542 None:intergenic 45.0%
CTATACCTAGGGACAGGAAA+AGG + chr4_1:38391564-38391583 Msa0546570:intron 45.0%
GAAAAGGGTCTTAGCGAAAG+AGG + chr4_1:38391580-38391599 Msa0546570:intron 45.0%
ACTCTTGGCACACAATCTCT+AGG + chr4_1:38391726-38391745 Msa0546570:intron 45.0%
TGGCACACAATCTCTAGGTT+AGG + chr4_1:38391731-38391750 Msa0546570:intron 45.0%
GCAAAAAGAAACCAACCGAG+AGG + chr4_1:38391809-38391828 Msa0546570:intron 45.0%
! CCCCTATATGAGTTGGAGAT+AGG - chr4_1:38391885-38391904 None:intergenic 45.0%
CTCCAACTCATATAGGGGAA+AGG + chr4_1:38391887-38391906 Msa0546570:intron 45.0%
TCCCTTTCCCCTATATGAGT+TGG - chr4_1:38391892-38391911 None:intergenic 45.0%
CTCATATAGGGGAAAGGGAA+TGG + chr4_1:38391893-38391912 Msa0546570:intron 45.0%
CATATAGGGGAAAGGGAATG+GGG + chr4_1:38391895-38391914 Msa0546570:intron 45.0%
GTGACTAAGGAATGAATGCC+TGG - chr4_1:38391935-38391954 None:intergenic 45.0%
GGCATTCATTCCTTAGTCAC+GGG + chr4_1:38391935-38391954 Msa0546570:intron 45.0%
! AGCAGCTGCTTCTAAAGACT+GGG + chr4_1:38391960-38391979 Msa0546570:intron 45.0%
!! GGCGCTTATGCATGTTTTTG+GGG + chr4_1:38392114-38392133 Msa0546570:intron 45.0%
!!! GCGCTTATGCATGTTTTTGG+GGG + chr4_1:38392115-38392134 Msa0546570:intron 45.0%
! GGGGGAGCTTATGAAAGTAT+TGG + chr4_1:38392133-38392152 Msa0546570:intron 45.0%
GCTTCGTACAAGCTATTCTC+TGG - chr4_1:38392192-38392211 None:intergenic 45.0%
GTAATAGTTGTGGGTAGCAG+AGG + chr4_1:38392601-38392620 Msa0546570:intron 45.0%
! GAGAGGAAATTGGAAGTGTG+TGG + chr4_1:38392650-38392669 Msa0546570:intron 45.0%
GGGATCTCAAATAACCAGCA+AGG + chr4_1:38392687-38392706 Msa0546570:intron 45.0%
AGCGGTTTACAAGTCAAGTG+AGG + chr4_1:38392872-38392891 Msa0546570:intron 45.0%
GCGGTTTACAAGTCAAGTGA+GGG + chr4_1:38392873-38392892 Msa0546570:intron 45.0%
AAAACAGGAAGAGAGGGGAA+AGG + chr4_1:38392903-38392922 Msa0546570:intron 45.0%
AAACAGGAAGAGAGGGGAAA+GGG + chr4_1:38392904-38392923 Msa0546570:intron 45.0%
TGGCTAAGTCATGCATTGTC+TGG + chr4_1:38392941-38392960 Msa0546570:intron 45.0%
TTCAGCAATTGCTCGTACTG+TGG + chr4_1:38393193-38393212 Msa0546570:intron 45.0%
TCAGCAATTGCTCGTACTGT+GGG + chr4_1:38393194-38393213 Msa0546570:intron 45.0%
!! ACATCTATCAAAGAGTGCCG+AGG + chr4_1:38393217-38393236 Msa0546570:CDS 45.0%
TGCATAGCAACAGCCATTTC+AGG - chr4_1:38393275-38393294 None:intergenic 45.0%
GTTTCAGGCAGGAGTAATTG+AGG + chr4_1:38393408-38393427 Msa0546570:intron 45.0%
TATATCAGGGCACAATGCAG+AGG - chr4_1:38393879-38393898 None:intergenic 45.0%
!! TTATATATACAAAATAAAAT+GGG - chr4_1:38389475-38389494 None:intergenic 5.0%
!! ATTATATATACAAAATAAAA+TGG - chr4_1:38389476-38389495 None:intergenic 5.0%
!!! TTATTTTGTATATATAATTT+TGG + chr4_1:38389478-38389497 Msa0546570:five_prime_UTR 5.0%
!!! TATTTTGTATATATAATTTT+GGG + chr4_1:38389479-38389498 Msa0546570:five_prime_UTR 5.0%
GGTGGGTGTGTTCTTCGTAA+AGG + chr4_1:38389311-38389330 Msa0546570:five_prime_UTR 50.0%
TCTGTCACTGACACCGGATA+CGG + chr4_1:38389829-38389848 Msa0546570:intron 50.0%
! GACAGTTCTAATCGAAGGCG+TGG - chr4_1:38390327-38390346 None:intergenic 50.0%
CAACACTAACACGTCAACGC+TGG - chr4_1:38390700-38390719 None:intergenic 50.0%
AACTCAACTGCGGCTGTCTA+TGG + chr4_1:38391426-38391445 Msa0546570:intron 50.0%
AACGTGCTATACCTAGGGAC+AGG + chr4_1:38391558-38391577 Msa0546570:intron 50.0%
! AAGACCCTTTTCCTGTCCCT+AGG - chr4_1:38391572-38391591 None:intergenic 50.0%
AGGGTCTTAGCGAAAGAGGT+AGG + chr4_1:38391584-38391603 Msa0546570:intron 50.0%
GGGTCTTAGCGAAAGAGGTA+GGG + chr4_1:38391585-38391604 Msa0546570:intron 50.0%
TCGCAGAAGCCTCTCTTGTT+TGG - chr4_1:38391621-38391640 None:intergenic 50.0%
! GAGCAGCTGCTTCTAAAGAC+TGG + chr4_1:38391959-38391978 Msa0546570:intron 50.0%
! TTCTAAAGACTGGGCTCCCA+AGG + chr4_1:38391969-38391988 Msa0546570:intron 50.0%
!! GGGTTTATTTGGGTTGGTCC+AGG + chr4_1:38392075-38392094 Msa0546570:intron 50.0%
TGTGTGGTCATGCAGAGACT+AGG + chr4_1:38392666-38392685 Msa0546570:intron 50.0%
GTGTGGTCATGCAGAGACTA+GGG + chr4_1:38392667-38392686 Msa0546570:intron 50.0%
CCATTTCAGGAGCCTTCATG+AGG - chr4_1:38393262-38393281 None:intergenic 50.0%
CCTCATGAAGGCTCCTGAAA+TGG + chr4_1:38393259-38393278 Msa0546570:CDS 50.0%
ACTTCTATGACTACGGGGAG+AGG - chr4_1:38393356-38393375 None:intergenic 50.0%
CACAGCTTCAGGAAGTTGTG+CGG - chr4_1:38393539-38393558 None:intergenic 50.0%
CACAACTTCCTGAAGCTGTG+AGG + chr4_1:38393539-38393558 Msa0546570:CDS 50.0%
AACTGCATGTACCTCCTCTG+CGG - chr4_1:38393596-38393615 None:intergenic 50.0%
CAGGAAGATGCTATAGCCGA+GGG + chr4_1:38393686-38393705 Msa0546570:intron 50.0%
TGACCTGACTTTAGCGAGTC+TGG - chr4_1:38393747-38393766 None:intergenic 50.0%
GTGAGTGTCAGTGCCGTATC+CGG - chr4_1:38389845-38389864 None:intergenic 55.0%
! GTTCTAATCGAAGGCGTGGC+TGG - chr4_1:38390323-38390342 None:intergenic 55.0%
GAGGCTTCTGCGACTGTCTA+TGG + chr4_1:38391628-38391647 Msa0546570:intron 55.0%
TAAGTGCACACAGCCCCTCT+CGG - chr4_1:38391827-38391846 None:intergenic 55.0%
ACAGGATGGGCACGACCTAT+AGG + chr4_1:38392249-38392268 Msa0546570:intron 55.0%
!! AAGAGAGGGGAAAGGGTGCT+TGG + chr4_1:38392911-38392930 Msa0546570:intron 55.0%
!! AGAGAGGGGAAAGGGTGCTT+GGG + chr4_1:38392912-38392931 Msa0546570:intron 55.0%
!! AAAGGGTGCTTGGGGGTAAC+TGG + chr4_1:38392921-38392940 Msa0546570:intron 55.0%
GCAGGAAGATGCTATAGCCG+AGG + chr4_1:38393685-38393704 Msa0546570:intron 55.0%
ACAGTGGCTCACCGTGAGTC+TGG + chr4_1:38391135-38391154 Msa0546570:intron 60.0%
CAGCTGCTCACCCGTGACTA+AGG - chr4_1:38391948-38391967 None:intergenic 60.0%
!! GAGAGGGGAAAGGGTGCTTG+GGG + chr4_1:38392913-38392932 Msa0546570:intron 60.0%
!! AGAGGGGAAAGGGTGCTTGG+GGG + chr4_1:38392914-38392933 Msa0546570:intron 60.0%
!! ACCTGCTCAAAGTGCCGCAG+AGG + chr4_1:38393579-38393598 Msa0546570:CDS 60.0%
TCCTCTGCGGCACTTTGAGC+AGG - chr4_1:38393583-38393602 None:intergenic 60.0%
!! TGCTCAAAGTGCCGCAGAGG+AGG + chr4_1:38393582-38393601 Msa0546570:CDS 60.0%
GGGCCAGACTCGCTAAAGTC+AGG + chr4_1:38393741-38393760 Msa0546570:CDS 60.0%
TGCACACAGCCCCTCTCGGT+TGG - chr4_1:38391823-38391842 None:intergenic 65.0%
CTACGGGGAGAGGAGAGAGC+AGG - chr4_1:38393346-38393365 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 38389273 38394055 38389273 ID=Msa0546570;Name=Msa0546570
chr4_1 mRNA 38389273 38394055 38389273 ID=Msa0546570-mRNA-1;Parent=Msa0546570;Name=Msa0546570-mRNA-1;_AED=0.05;_eAED=0.05;_QI=240|1|1|1|1|1|6|286|227
chr4_1 exon 38389273 38389624 38389273 ID=Msa0546570-mRNA-1:exon:9834;Parent=Msa0546570-mRNA-1
chr4_1 exon 38389727 38389803 38389727 ID=Msa0546570-mRNA-1:exon:9835;Parent=Msa0546570-mRNA-1
chr4_1 exon 38390900 38391002 38390900 ID=Msa0546570-mRNA-1:exon:9836;Parent=Msa0546570-mRNA-1
chr4_1 exon 38393198 38393319 38393198 ID=Msa0546570-mRNA-1:exon:9837;Parent=Msa0546570-mRNA-1
chr4_1 exon 38393415 38393603 38393415 ID=Msa0546570-mRNA-1:exon:9838;Parent=Msa0546570-mRNA-1
chr4_1 exon 38393689 38394055 38393689 ID=Msa0546570-mRNA-1:exon:9839;Parent=Msa0546570-mRNA-1
chr4_1 five_prime_UTR 38389273 38389512 38389273 ID=Msa0546570-mRNA-1:five_prime_utr;Parent=Msa0546570-mRNA-1
chr4_1 CDS 38389513 38389624 38389513 ID=Msa0546570-mRNA-1:cds;Parent=Msa0546570-mRNA-1
chr4_1 CDS 38389727 38389803 38389727 ID=Msa0546570-mRNA-1:cds;Parent=Msa0546570-mRNA-1
chr4_1 CDS 38390900 38391002 38390900 ID=Msa0546570-mRNA-1:cds;Parent=Msa0546570-mRNA-1
chr4_1 CDS 38393198 38393319 38393198 ID=Msa0546570-mRNA-1:cds;Parent=Msa0546570-mRNA-1
chr4_1 CDS 38393415 38393603 38393415 ID=Msa0546570-mRNA-1:cds;Parent=Msa0546570-mRNA-1
chr4_1 CDS 38393689 38393769 38393689 ID=Msa0546570-mRNA-1:cds;Parent=Msa0546570-mRNA-1
chr4_1 three_prime_UTR 38393770 38394055 38393770 ID=Msa0546570-mRNA-1:three_prime_utr;Parent=Msa0546570-mRNA-1
Gene Sequence

>Msa0546570

ATGGAGAAGGTGATGAACATTCTGAAACCGAAACCAAATCCGCAACAGTTATTGCGAGATTGGCAACGTAAGCTTCGACAAGAGTGTCGAAACATTGAACGACAAATTCGCGATATTCAGAGAGAGGAGAAAAATGTGCAGAAAGCTATTAAAGAAGCTGCTAAGAGGAATGACATTGGTTCTGCAAAGGCACTCGCTACAGAACTTGTGAGATCTAGGAAAACAGTGAACCGTCTGCATGAAAATAAGGCACAACTGAACTCAATATCAATGCACCTTGGAGAAAGTGTTGCAATTGCTCGTACTGTGGGACATCTATCAAAGAGTGCCGAGGTTATGAAGCTTGTCAATAACCTCATGAAGGCTCCTGAAATGGCTGTTGCTATGCAAGAGTTCAGCAAAGAAATGACCAAGGCAGGAGTAATTGAGGAGATAGTAAACGATGCTGTTGACTCAGCATTAGATTCTGAGGACATAGAAGATGAAATAGATGAAGAAGTTGATAAAGTCTTAACTGAATTAGCTGGTGAGACAGCCGCACAACTTCCTGAAGCTGTGAGGAAACAAAAGGTGAAGCAACCTGCTCAAAGTGCCGCAGAGGAGGAAGATGCTATAGCCGAGGGTGTTGATGATGAAGAAGAAATGGAAGAAATTAGGGCCAGACTCGCTAAAGTCAGGTCATAA

Protein sequence

>Msa0546570

MEKVMNILKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKEAAKRNDIGSAKALATELVRSRKTVNRLHENKAQLNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLMKAPEMAVAMQEFSKEMTKAGVIEEIVNDAVDSALDSEDIEDEIDEEVDKVLTELAGETAAQLPEAVRKQKVKQPAQSAAEEEDAIAEGVDDEEEMEEIRARLAKVRS*