AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1450760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1450760 MtrunA17_Chr6g0469071 46.875 384 135 5 210 591 299 615 5.52e-110 344
Msa1450760 MtrunA17_Chr1g0153901 51.240 242 115 3 210 449 300 540 1.55e-79 262
Msa1450760 MtrunA17_Chr5g0434431 52.252 222 57 1 370 591 1 173 5.63e-73 232
Msa1450760 MtrunA17_Chr8g0357811 92.661 109 8 0 320 428 1 109 9.81e-68 216
Msa1450760 MtrunA17_Chr2g0287771 53.704 108 50 0 320 427 1 108 4.91e-39 139
Msa1450760 MtrunA17_Chr2g0325841 34.764 233 146 3 311 542 968 1195 4.70e-37 148
Msa1450760 MtrunA17_Chr1g0174011 47.552 143 26 1 449 591 2 95 4.62e-34 125
Msa1450760 MtrunA17_Chr1g0153911 47.794 136 22 1 456 591 1 87 7.92e-32 118
Msa1450760 MtrunA17_Chr2g0329631 34.524 168 72 3 13 147 37 199 1.00e-20 92.0
Msa1450760 MtrunA17_Chr7g0226101 55.556 72 32 0 149 220 265 336 3.17e-19 91.7
Msa1450760 MtrunA17_Chr7g0242031 55.556 72 32 0 149 220 318 389 1.39e-17 86.3
Msa1450760 MtrunA17_Chr5g0415911 54.167 72 33 0 149 220 355 426 1.57e-17 85.9
Msa1450760 MtrunA17_Chr3g0097741 55.556 72 32 0 149 220 370 441 1.98e-17 87.0
Msa1450760 MtrunA17_Chr8g0393091 52.778 72 34 0 149 220 364 435 1.07e-15 81.3
Msa1450760 MtrunA17_Chr2g0303761 50.704 71 34 1 150 220 5 74 4.62e-15 73.9
Msa1450760 MtrunA17_Chr2g0309001 50.000 72 36 0 149 220 362 433 5.08e-14 74.7
Msa1450760 MtrunA17_Chr4g0029851 50.704 71 34 1 150 220 263 332 1.63e-13 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 112 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAAGTCTTTAACACATTT+TGG 0.165009 tig0033048:-18637 None:intergenic
AAAATGTGTTAAAGACTTAT+TGG 0.181232 tig0033048:+18639 Msa1450760:CDS
GTTCAATTTGTTTGTTTGTT+TGG 0.203339 tig0033048:-18426 None:intergenic
TTCAATTTGTTTGTTTGTTT+GGG 0.210254 tig0033048:-18425 None:intergenic
ATAAACATTTATGTTGTTTC+CGG 0.213002 tig0033048:-17997 None:intergenic
AAGGCATATCTTGCTTCTTT+TGG 0.255862 tig0033048:+17294 Msa1450760:CDS
CATTGATGATGACATCTATT+TGG 0.256445 tig0033048:+17063 Msa1450760:CDS
TATGGAGACACTCAAGAATA+TGG 0.260100 tig0033048:+18387 Msa1450760:CDS
TTGCACCATCAACGACTTTC+CGG 0.260871 tig0033048:+18121 Msa1450760:CDS
TTACTTGGCACCGTTTCTTA+TGG 0.263856 tig0033048:+18952 Msa1450760:CDS
ACTATTCTATTCTACAAGTT+TGG 0.312483 tig0033048:+18680 Msa1450760:CDS
TATATAGGGAGCCCCTAATA+TGG 0.313089 tig0033048:+19566 Msa1450760:intron
ATTAAGAAATTTATGACTTC+CGG 0.313134 tig0033048:-18610 None:intergenic
GATGTTCTTGATGCGTATTC+CGG 0.316391 tig0033048:+18068 Msa1450760:CDS
GTTCGTATGTAGGATTTAAC+TGG 0.316883 tig0033048:-18902 None:intergenic
TGAAAGAGAAGCAATATCTA+AGG 0.319092 tig0033048:+18569 Msa1450760:CDS
TTAAGACTGTTGTGGGATAA+AGG 0.325505 tig0033048:+18041 Msa1450760:CDS
TATCAACATTGTCTTTGATT+AGG 0.340675 tig0033048:-17836 None:intergenic
ATCCTGGAATATCCTTGAAT+TGG 0.345186 tig0033048:+16101 Msa1450760:CDS
AAGAAAATCACAAGGACAAT+TGG 0.350541 tig0033048:+18506 Msa1450760:CDS
ACAAACAAATCAAATGTGTT+TGG 0.350566 tig0033048:+18824 Msa1450760:CDS
GATGCTGTCGATGATGATTT+CGG 0.351143 tig0033048:+17962 Msa1450760:CDS
GATCAGCAGCACCTTGTTCC+TGG 0.353942 tig0033048:-17024 None:intergenic
ATGCTGTCGATGATGATTTC+GGG 0.355329 tig0033048:+17963 Msa1450760:CDS
TATCCACAATCAATTGTGTT+AGG 0.357921 tig0033048:-19433 None:intergenic
TAAACATTTATGTTGTTTCC+GGG 0.364791 tig0033048:-17996 None:intergenic
ACTTATTGGTTGGCGGGGCT+TGG 0.371267 tig0033048:+18653 Msa1450760:CDS
CGCAAGCTCGGAAGGTGACT+TGG 0.378300 tig0033048:-16068 None:intergenic
CTACCTTTGCATAGAGTGTT+GGG 0.378522 tig0033048:-16798 None:intergenic
AGGTACCACAGGTTCGTTCT+TGG 0.391410 tig0033048:+17242 Msa1450760:CDS
ATGTTGTTTCCGGGTTGGTA+TGG 0.394322 tig0033048:-17987 None:intergenic
GTCCAATTCAAGGATATTCC+AGG 0.401986 tig0033048:-16103 None:intergenic
GCTACCTTTGCATAGAGTGT+TGG 0.405827 tig0033048:-16799 None:intergenic
ACAACCAATGTATTATCCTT+TGG 0.410346 tig0033048:-19084 None:intergenic
TGTTGTTTCCGGGTTGGTAT+GGG 0.428060 tig0033048:-17986 None:intergenic
AATTTGTTTGTTTGTTTGGG+AGG 0.440214 tig0033048:-18422 None:intergenic
GCAAAGGTAGCAGCGAAGAT+AGG 0.447979 tig0033048:+16811 Msa1450760:CDS
TTTCTAGCTGGGAGATATGT+TGG 0.453566 tig0033048:+20658 Msa1450760:intron
ATCAACGACTTTCCGGCATA+TGG 0.457900 tig0033048:+18128 Msa1450760:CDS
CTGCTAATATTACTACCTCT+TGG 0.458064 tig0033048:+19488 Msa1450760:CDS
ATGGAGACACTCAAGAATAT+GGG 0.460318 tig0033048:+18388 Msa1450760:CDS
TGGTACTTTGAATTTACTCC+AGG 0.460563 tig0033048:+17314 Msa1450760:CDS
TTAAAGACTTATTGGTTGGC+GGG 0.463019 tig0033048:+18647 Msa1450760:CDS
GGAGATGACAAGGAAACAAT+TGG 0.464074 tig0033048:+20176 Msa1450760:CDS
CATTTATGTTGTTTCCGGGT+TGG 0.464425 tig0033048:-17992 None:intergenic
GTTCTTGGAGATAAACAAAC+AGG 0.472710 tig0033048:+17257 Msa1450760:CDS
GGTTCGTTGGCTTCGTCCTA+AGG 0.473165 tig0033048:+19291 Msa1450760:CDS
GGTAATTTGTAAAGGTTCAC+TGG 0.473558 tig0033048:-19609 None:intergenic
ATGAACCTTCTTGTTTGTTG+TGG 0.474107 tig0033048:+20771 Msa1450760:CDS
TGTTGTTTATGTTGTTCTTG+TGG 0.475137 tig0033048:+20200 Msa1450760:CDS
GTATGCTTTGCGAAATGATT+GGG 0.478048 tig0033048:+20543 Msa1450760:CDS
TGTGTTAAAGACTTATTGGT+TGG 0.485711 tig0033048:+18643 Msa1450760:CDS
TAGAGGCAACCGGCAGTAGT+AGG 0.489525 tig0033048:-19630 None:intergenic
TTTCTGAACATTGTCAATAA+CGG 0.495554 tig0033048:-18530 None:intergenic
GTTAAAATTAGAACATGGTC+CGG 0.496286 tig0033048:+18591 Msa1450760:CDS
TTGTTTCCTTGTCATCTCCA+AGG 0.497005 tig0033048:-20172 None:intergenic
TTTACGTGTATAGAGGGCAT+TGG 0.497041 tig0033048:+19043 Msa1450760:intron
ATATGCCGGAAAGTCGTTGA+TGG 0.502226 tig0033048:-18126 None:intergenic
TGTATGCTTTGCGAAATGAT+TGG 0.509036 tig0033048:+20542 Msa1450760:CDS
AGTCTTAAATCATCAATCAA+TGG 0.510004 tig0033048:-18026 None:intergenic
TACAAATTACCTACTACTGC+CGG 0.514308 tig0033048:+19621 Msa1450760:CDS
GATATGCCTTGATTAAATCC+AGG 0.515940 tig0033048:-17281 None:intergenic
TGATGATTTAAGACTGTTGT+GGG 0.518208 tig0033048:+18034 Msa1450760:CDS
CTTGCGTTGAAGCTTAATCC+TGG 0.518653 tig0033048:+16085 Msa1450760:CDS
ACGCAACTTAGTTCGTATGT+AGG 0.519497 tig0033048:-18912 None:intergenic
GTCATCATCAATGTCCAACT+TGG 0.520409 tig0033048:-17053 None:intergenic
CGGCATATGGTAATTTGAGT+GGG 0.520575 tig0033048:+18141 Msa1450760:CDS
GGAGATAAACAAACAGGCCC+TGG 0.520667 tig0033048:+17263 Msa1450760:CDS
CAGTAGTAGGTAATTTGTAA+AGG 0.526789 tig0033048:-19617 None:intergenic
GTTAAAGACTTATTGGTTGG+CGG 0.529566 tig0033048:+18646 Msa1450760:CDS
GTTGTGTTAGGAAGCGCAAA+AGG 0.533308 tig0033048:+18466 Msa1450760:CDS
CCGGCATATGGTAATTTGAG+TGG 0.534840 tig0033048:+18140 Msa1450760:CDS
TATTACTACCTCTTGGATGA+AGG 0.535487 tig0033048:+19495 Msa1450760:CDS
GTAGCAATTGGAGGTACCAC+AGG 0.536416 tig0033048:+17231 Msa1450760:intron
AGCTTCAACGCAAGCTCGGA+AGG 0.537948 tig0033048:-16076 None:intergenic
GCTCGGAAGGTGACTTGGGA+GGG 0.542391 tig0033048:-16063 None:intergenic
ATTAATCGTCATTTGTCCAA+AGG 0.543300 tig0033048:+19068 Msa1450760:CDS
TATACTTACTCCATAAGAAA+CGG 0.550414 tig0033048:-18962 None:intergenic
CAACCTAACACAATTGATTG+TGG 0.553222 tig0033048:+19430 Msa1450760:CDS
AGATCTTGACACAACAATGA+AGG 0.553286 tig0033048:+19125 Msa1450760:CDS
GATGATGACATCTATTTGGA+AGG 0.554196 tig0033048:+17067 Msa1450760:CDS
ACAGGCCCTGGATTTAATCA+AGG 0.556150 tig0033048:+17275 Msa1450760:CDS
GAGGTTCATCAATTAGCAAA+CGG 0.557640 tig0033048:+19256 Msa1450760:CDS
GCAAGCTCGGAAGGTGACTT+GGG 0.558966 tig0033048:-16067 None:intergenic
CCACTCAAATTACCATATGC+CGG 0.564695 tig0033048:-18140 None:intergenic
TATGAACAAAGTGTGTTACT+TGG 0.580249 tig0033048:+18937 Msa1450760:CDS
TAAAGACTTATTGGTTGGCG+GGG 0.581393 tig0033048:+18648 Msa1450760:CDS
CTTCAGCCTTGGAGATGACA+AGG 0.585200 tig0033048:+20166 Msa1450760:intron
TTGTCCAAAGGATAATACAT+TGG 0.585455 tig0033048:+19080 Msa1450760:CDS
AGCTCGGAAGGTGACTTGGG+AGG 0.586238 tig0033048:-16064 None:intergenic
AACTGGTTCTGTATTCATTG+CGG 0.587743 tig0033048:-18885 None:intergenic
AGTAGAGTTCGAACAACAGA+TGG 0.590629 tig0033048:+18333 Msa1450760:CDS
ATATGCCTTGATTAAATCCA+GGG 0.592641 tig0033048:-17280 None:intergenic
TGTTTGTTTCAATACAAAGA+CGG 0.593801 tig0033048:-18808 None:intergenic
TTGATGATTTAAGACTGTTG+TGG 0.597057 tig0033048:+18033 Msa1450760:CDS
ATTAAGCTTCAACGCAAGCT+CGG 0.597089 tig0033048:-16080 None:intergenic
ATGTAGCACTACGAGTCAAG+TGG 0.602557 tig0033048:+16851 Msa1450760:CDS
CAAGTGTTGGTATGGAGCAG+AGG 0.603332 tig0033048:+16038 None:intergenic
TACATCCACAACAAACAAGA+AGG 0.605162 tig0033048:-20776 None:intergenic
ACGCATATTGAAATGTTCGC+CGG 0.615208 tig0033048:-18087 None:intergenic
ATTTCGGGCCCATACCAACC+CGG 0.615265 tig0033048:+17978 Msa1450760:CDS
TGATGCGTCAGGAAAGAAGA+AGG 0.616696 tig0033048:+20227 Msa1450760:CDS
CTTGTGGATGATGATGCGTC+AGG 0.617377 tig0033048:+20216 Msa1450760:CDS
TGCTGATCTTGCAACCAAGT+TGG 0.631418 tig0033048:+17039 Msa1450760:CDS
TGGCCCAACACTCTATGCAA+AGG 0.637467 tig0033048:+16795 Msa1450760:CDS
CTAAGGTTAAAATTAGAACA+TGG 0.649969 tig0033048:+18586 Msa1450760:CDS
GTTGATGGTGCAAAACAACA+TGG 0.650797 tig0033048:-18111 None:intergenic
GATCTTTGTTAAATGAACAG+AGG 0.654416 tig0033048:-19107 None:intergenic
ATGGTATACCTTCATCCAAG+AGG 0.683941 tig0033048:-19503 None:intergenic
TTGCACCAACTGATGCGCTG+TGG 0.696735 tig0033048:-18356 None:intergenic
TGCAGCACAAGAAAATCACA+AGG 0.701471 tig0033048:+18498 Msa1450760:CDS
TATCTCCAAGAACGAACCTG+TGG 0.712423 tig0033048:-17247 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG - tig0033048:19354-19373 None:intergenic 0.0%
!! ATATATATATATATATATAT+AGG + tig0033048:19355-19374 Msa1450760:intron 0.0%
!! TATATATATATATATATATA+GGG + tig0033048:19354-19373 Msa1450760:intron 0.0%
!!! GTAAATTCTTATTTTTAAAA+TGG - tig0033048:16937-16956 None:intergenic 10.0%
!! TAAAAATTAAATTCATTTGT+AGG + tig0033048:19399-19418 Msa1450760:intron 10.0%
!! AAATAAGTAAAATAACAATA+AGG - tig0033048:20463-20482 None:intergenic 10.0%
!!! ATTGTTAATCTTTTATTGAT+TGG - tig0033048:16595-16614 None:intergenic 15.0%
!!! TTATATATTTTTGTTGTGTA+TGG + tig0033048:16977-16996 Msa1450760:intron 15.0%
!!! TATATATTTTTGTTGTGTAT+GGG + tig0033048:16978-16997 Msa1450760:intron 15.0%
!! AGATAAAAAGTAATAAAATC+TGG - tig0033048:17377-17396 None:intergenic 15.0%
!! TTCAAAAATTTAAGAGTTTA+AGG + tig0033048:17508-17527 Msa1450760:intron 15.0%
!! AAATGCTATTAAAATTAAGT+AGG + tig0033048:17598-17617 Msa1450760:intron 15.0%
!! AATGCTATTAAAATTAAGTA+GGG + tig0033048:17599-17618 Msa1450760:intron 15.0%
!! ATTAAACAACATTAGATTTA+GGG - tig0033048:17673-17692 None:intergenic 15.0%
!! AATTAAACAACATTAGATTT+AGG - tig0033048:17674-17693 None:intergenic 15.0%
!! TTTAATTAATGTTCTATTAC+TGG + tig0033048:17687-17706 Msa1450760:intron 15.0%
!!! TATTGATTTCATATTTATTC+AGG + tig0033048:18777-18796 Msa1450760:intron 15.0%
!!! ATTTAAAACTCAATTTTGTT+GGG - tig0033048:18859-18878 None:intergenic 15.0%
!!! TAAAAATATTGACTAAATAG+AGG - tig0033048:19650-19669 None:intergenic 15.0%
!! AAAAAACAAACAAAGAAATA+AGG + tig0033048:19989-20008 Msa1450760:intron 15.0%
!! AAATTTGTAAACTAAATTGT+GGG + tig0033048:20287-20306 Msa1450760:intron 15.0%
!! TATGAAACTTAAGATTTATT+AGG + tig0033048:20586-20605 Msa1450760:intron 15.0%
!!! TTTTATGATCCAATACAAAT+AGG + tig0033048:16303-16322 Msa1450760:intron 20.0%
!!! CGTTTTTCATTATTAACAAA+AGG + tig0033048:16681-16700 Msa1450760:intron 20.0%
!! TTATTAACAAAAGGTAACAA+AGG + tig0033048:16690-16709 Msa1450760:intron 20.0%
!! CAACAAAAATATATAAACGA+TGG - tig0033048:16973-16992 None:intergenic 20.0%
!!! AAATGATTTAAAGCTATGAA+AGG - tig0033048:17099-17118 None:intergenic 20.0%
!!! GAAATCAAATTTTGATCAAA+CGG - tig0033048:17349-17368 None:intergenic 20.0%
!!! AAAGGACATAAAAAAAGTAT+AGG - tig0033048:17772-17791 None:intergenic 20.0%
!!! ATAAACATTTATGTTGTTTC+CGG - tig0033048:18000-18019 None:intergenic 20.0%
!!! TTCAATTTGTTTGTTTGTTT+GGG - tig0033048:18428-18447 None:intergenic 20.0%
!! ATTAAGAAATTTATGACTTC+CGG - tig0033048:18613-18632 None:intergenic 20.0%
!!! AATAAGTCTTTAACACATTT+TGG - tig0033048:18640-18659 None:intergenic 20.0%
!! AAAATGTGTTAAAGACTTAT+TGG + tig0033048:18639-18658 Msa1450760:CDS 20.0%
!!! GATTTAAAACTCAATTTTGT+TGG - tig0033048:18860-18879 None:intergenic 20.0%
!!! ATAATTATTTGAGATGTTGA+TGG + tig0033048:19786-19805 Msa1450760:intron 20.0%
!! ACAAAAAACCAAACAATATT+TGG - tig0033048:19932-19951 None:intergenic 20.0%
!! CTCAATAGATAGATATAAAA+TGG + tig0033048:20095-20114 Msa1450760:intron 20.0%
!! GAAATTTGTAAACTAAATTG+TGG + tig0033048:20286-20305 Msa1450760:intron 20.0%
!! TATGTCTATCTATCTTAATT+TGG - tig0033048:20439-20458 None:intergenic 20.0%
!! TGTTTAATAATTAGTACTGT+TGG + tig0033048:20625-20644 Msa1450760:intron 20.0%
! AGATTAACAATTGATGAGTT+TGG + tig0033048:16604-16623 Msa1450760:intron 25.0%
!!! TTCCATTTTTCTTTGTTTGT+AGG + tig0033048:16758-16777 Msa1450760:intron 25.0%
! AACCTACAAACAAAGAAAAA+TGG - tig0033048:16763-16782 None:intergenic 25.0%
!!! TATTTCTTTGTTGCTTTCTT+AGG + tig0033048:16902-16921 Msa1450760:intron 25.0%
! ATGAGATTTATCTCTTGTAT+TGG + tig0033048:17132-17151 Msa1450760:intron 25.0%
! AAACATAATGCAAAGTTCAA+TGG - tig0033048:17208-17227 None:intergenic 25.0%
!! ATTATGTTTTTCGTAGCAAT+TGG + tig0033048:17219-17238 Msa1450760:intron 25.0%
!!! TAATCAAACTTTGTTTTAGC+AGG + tig0033048:17536-17555 Msa1450760:intron 25.0%
!!! AATCAAACTTTGTTTTAGCA+GGG + tig0033048:17537-17556 Msa1450760:intron 25.0%
!! GACAATAACATCAATCTTTT+CGG + tig0033048:17813-17832 Msa1450760:CDS 25.0%
! TATCAACATTGTCTTTGATT+AGG - tig0033048:17839-17858 None:intergenic 25.0%
!!! TAAACATTTATGTTGTTTCC+GGG - tig0033048:17999-18018 None:intergenic 25.0%
! AGTCTTAAATCATCAATCAA+TGG - tig0033048:18029-18048 None:intergenic 25.0%
!! GTTCAATTTGTTTGTTTGTT+TGG - tig0033048:18429-18448 None:intergenic 25.0%
! TTTCTGAACATTGTCAATAA+CGG - tig0033048:18533-18552 None:intergenic 25.0%
! CTAAGGTTAAAATTAGAACA+TGG + tig0033048:18586-18605 Msa1450760:CDS 25.0%
! ACTATTCTATTCTACAAGTT+TGG + tig0033048:18680-18699 Msa1450760:CDS 25.0%
! TGTTTGTTTCAATACAAAGA+CGG - tig0033048:18811-18830 None:intergenic 25.0%
! ACAAACAAATCAAATGTGTT+TGG + tig0033048:18824-18843 Msa1450760:CDS 25.0%
!! ATCAAATGTGTTTGGATTTT+TGG + tig0033048:18832-18851 Msa1450760:CDS 25.0%
! TATACTTACTCCATAAGAAA+CGG - tig0033048:18965-18984 None:intergenic 25.0%
!!! GTTCTATGTTTTAGTGTTAT+AGG - tig0033048:19203-19222 None:intergenic 25.0%
! AGCAAACGGTAATAAAAAAA+AGG + tig0033048:19270-19289 Msa1450760:CDS 25.0%
! GTAATAAAAAAAAGGTTCGT+TGG + tig0033048:19278-19297 Msa1450760:CDS 25.0%
! ATTAAATTCATTTGTAGGCA+AGG + tig0033048:19404-19423 Msa1450760:intron 25.0%
! ATATATATGGTGCAAACATA+TGG - tig0033048:19525-19544 None:intergenic 25.0%
!!! TATTTTTAGGGTCCATATTA+GGG - tig0033048:19581-19600 None:intergenic 25.0%
!!! TTATTTTTAGGGTCCATATT+AGG - tig0033048:19582-19601 None:intergenic 25.0%
! TAATATGGACCCTAAAAATA+AGG + tig0033048:19581-19600 Msa1450760:CDS 25.0%
! AATATGGACCCTAAAAATAA+GGG + tig0033048:19582-19601 Msa1450760:CDS 25.0%
! TAAGGTAACCAAATATTGTT+TGG + tig0033048:19921-19940 Msa1450760:intron 25.0%
! TGTTTCAGAAAAATTAACCT+TGG - tig0033048:20019-20038 None:intergenic 25.0%
! TTATATCTATCTATTGAGCT+TGG - tig0033048:20093-20112 None:intergenic 25.0%
!! TAATCTATTTTACAAACCGT+AGG + tig0033048:20483-20502 Msa1450760:intron 25.0%
! GAAACTTAAGATTTATTAGG+AGG + tig0033048:20589-20608 Msa1450760:intron 25.0%
!!! AGACCTTTTTTGTTTTGTTT+TGG + tig0033048:20692-20711 Msa1450760:CDS 25.0%
! GTACCAAAACAAAACAAAAA+AGG - tig0033048:20698-20717 None:intergenic 25.0%
! TTCTTTTTCTGTCCAATTCA+AGG - tig0033048:16116-16135 None:intergenic 30.0%
TATTAATCCAATTGCTAGAG+AGG + tig0033048:16232-16251 Msa1450760:intron 30.0%
!!! GTTTTTAGGTTATGTGTACT+TGG + tig0033048:16330-16349 Msa1450760:intron 30.0%
!! CTAATGGTTAGCCTTTATAA+TGG + tig0033048:16360-16379 Msa1450760:intron 30.0%
AGCCTTTATAATGGTGAATT+AGG + tig0033048:16369-16388 Msa1450760:intron 30.0%
GCCTTTATAATGGTGAATTA+GGG + tig0033048:16370-16389 Msa1450760:intron 30.0%
ACCCTAATTCACCATTATAA+AGG - tig0033048:16374-16393 None:intergenic 30.0%
TAAAACAGTTGTCCAAGTTA+GGG - tig0033048:16412-16431 None:intergenic 30.0%
ATAAAACAGTTGTCCAAGTT+AGG - tig0033048:16413-16432 None:intergenic 30.0%
! TAACTTGGACAACTGTTTTA+TGG + tig0033048:16412-16431 Msa1450760:intron 30.0%
! ATTAATGGTTGTTCTGAACA+TGG - tig0033048:16545-16564 None:intergenic 30.0%
GCAGTCACTCAAATTATTAA+TGG - tig0033048:16560-16579 None:intergenic 30.0%
TAACAATTGATGAGTTTGGA+AGG + tig0033048:16608-16627 Msa1450760:intron 30.0%
AACAATTGATGAGTTTGGAA+GGG + tig0033048:16609-16628 Msa1450760:intron 30.0%
!! GATGTTTAAGAACTTTTTCC+AGG + tig0033048:17006-17025 Msa1450760:intron 30.0%
!! CATTGATGATGACATCTATT+TGG + tig0033048:17063-17082 Msa1450760:CDS 30.0%
ATATGCCTTGATTAAATCCA+GGG - tig0033048:17283-17302 None:intergenic 30.0%
CAAGATTAGAACACTATGAA+AGG - tig0033048:17474-17493 None:intergenic 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG + tig0033048:17629-17648 Msa1450760:intron 30.0%
!! TACAAGGTCGCTATTTTATA+GGG + tig0033048:17630-17649 Msa1450760:intron 30.0%
GAATTCAATTTACCCATTCT+TGG + tig0033048:17731-17750 Msa1450760:intron 30.0%
! AAAAGTATAGGTCAGCATTA+TGG - tig0033048:17760-17779 None:intergenic 30.0%
! TTGATGATTTAAGACTGTTG+TGG + tig0033048:18033-18052 Msa1450760:CDS 30.0%
! TGATGATTTAAGACTGTTGT+GGG + tig0033048:18034-18053 Msa1450760:CDS 30.0%
GCTACTATAAGCAATTACTT+TGG + tig0033048:18205-18224 Msa1450760:intron 30.0%
CTATAAGCAATTACTTTGGA+AGG + tig0033048:18209-18228 Msa1450760:intron 30.0%
TTCAATCTCACTGACATTTA+TGG - tig0033048:18254-18273 None:intergenic 30.0%
ACTTGCAGCAAAAATTAAAG+CGG + tig0033048:18303-18322 Msa1450760:CDS 30.0%
GTTGGTGCAAAAATCATTTA+TGG + tig0033048:18369-18388 Msa1450760:CDS 30.0%
! AATTTGTTTGTTTGTTTGGG+AGG - tig0033048:18425-18444 None:intergenic 30.0%
!!! ACAACAACTTTTTCAGAACA+AGG - tig0033048:18451-18470 None:intergenic 30.0%
TCTGAAAAAGTTGTTGTGTT+AGG + tig0033048:18454-18473 Msa1450760:CDS 30.0%
AAGAAAATCACAAGGACAAT+TGG + tig0033048:18506-18525 Msa1450760:CDS 30.0%
TGAAAGAGAAGCAATATCTA+AGG + tig0033048:18569-18588 Msa1450760:CDS 30.0%
GTTAAAATTAGAACATGGTC+CGG + tig0033048:18591-18610 Msa1450760:CDS 30.0%
TGTGTTAAAGACTTATTGGT+TGG + tig0033048:18643-18662 Msa1450760:CDS 30.0%
! TATGAACAAAGTGTGTTACT+TGG + tig0033048:18937-18956 Msa1450760:CDS 30.0%
! TTGTTCTTTTACGTGTATAG+AGG + tig0033048:19036-19055 Msa1450760:intron 30.0%
! TGTTCTTTTACGTGTATAGA+GGG + tig0033048:19037-19056 Msa1450760:intron 30.0%
ATTAATCGTCATTTGTCCAA+AGG + tig0033048:19068-19087 Msa1450760:CDS 30.0%
TTGTCCAAAGGATAATACAT+TGG + tig0033048:19080-19099 Msa1450760:CDS 30.0%
ACAACCAATGTATTATCCTT+TGG - tig0033048:19087-19106 None:intergenic 30.0%
GATCTTTGTTAAATGAACAG+AGG - tig0033048:19110-19129 None:intergenic 30.0%
!!! ATTTTTTTAACCTAGTGCTC+TGG + tig0033048:19234-19253 Msa1450760:intron 30.0%
TATCCACAATCAATTGTGTT+AGG - tig0033048:19436-19455 None:intergenic 30.0%
!!! ATTTTTAGGGTCCATATTAG+GGG - tig0033048:19580-19599 None:intergenic 30.0%
! CAGTAGTAGGTAATTTGTAA+AGG - tig0033048:19620-19639 None:intergenic 30.0%
TGAAGTAGTGAAGAACATAT+AGG - tig0033048:19717-19736 None:intergenic 30.0%
CCACTCTAGTTAAAAAAGAA+TGG - tig0033048:19892-19911 None:intergenic 30.0%
!!! CCATTCTTTTTTAACTAGAG+TGG + tig0033048:19889-19908 Msa1450760:intron 30.0%
! CTAGAGTGGTATTGAAATTA+AGG + tig0033048:19903-19922 Msa1450760:intron 30.0%
TGTTTCTCTGATACACAAAA+CGG + tig0033048:19949-19968 Msa1450760:intron 30.0%
TGAGCGTCTGAAAAATAAAA+TGG + tig0033048:20043-20062 Msa1450760:intron 30.0%
ATCTTCAACTTACATCAGTT+AGG - tig0033048:20146-20165 None:intergenic 30.0%
! TGTTGTTTATGTTGTTCTTG+TGG + tig0033048:20200-20219 Msa1450760:CDS 30.0%
TACAAATGACCTACTACAAT+CGG - tig0033048:20316-20335 None:intergenic 30.0%
TTGTAGTAGGTCATTTGTAT+AGG + tig0033048:20317-20336 Msa1450760:intron 30.0%
GTTGTATCATTGAATACCTA+CGG - tig0033048:20502-20521 None:intergenic 30.0%
!! GTTTGTTGTTATTTCTAGCT+GGG + tig0033048:20647-20666 Msa1450760:intron 30.0%
ATCCTGGAATATCCTTGAAT+TGG + tig0033048:16101-16120 Msa1450760:CDS 35.0%
!! TGGATCATAAAAGTGTTTGC+AGG - tig0033048:16295-16314 None:intergenic 35.0%
AAAACCTCGCCTATTTGTAT+TGG - tig0033048:16315-16334 None:intergenic 35.0%
! TACAAATAGGCGAGGTTTTT+AGG + tig0033048:16316-16335 Msa1450760:intron 35.0%
TTAGGTTATGTGTACTTGGA+TGG + tig0033048:16334-16353 Msa1450760:intron 35.0%
TAGAGCAATTAGGTGCATTT+AGG + tig0033048:16452-16471 Msa1450760:intron 35.0%
! TGTAGGTTTGCATCATTTTC+TGG + tig0033048:16775-16794 Msa1450760:intron 35.0%
! TGCTACATCTCGTATTTTCT+TGG - tig0033048:16839-16858 None:intergenic 35.0%
!! AAGAACTTTTTCCAGGAACA+AGG + tig0033048:17013-17032 Msa1450760:CDS 35.0%
GATGATGACATCTATTTGGA+AGG + tig0033048:17067-17086 Msa1450760:CDS 35.0%
ATGACATCTATTTGGAAGGT+TGG + tig0033048:17071-17090 Msa1450760:intron 35.0%
! ATGTTTTTCGTAGCAATTGG+AGG + tig0033048:17222-17241 Msa1450760:intron 35.0%
GTTCTTGGAGATAAACAAAC+AGG + tig0033048:17257-17276 Msa1450760:CDS 35.0%
GATATGCCTTGATTAAATCC+AGG - tig0033048:17284-17303 None:intergenic 35.0%
! AAGGCATATCTTGCTTCTTT+TGG + tig0033048:17294-17313 Msa1450760:CDS 35.0%
TGGTACTTTGAATTTACTCC+AGG + tig0033048:17314-17333 Msa1450760:CDS 35.0%
!! TCAAATTTTGATCAAACGGC+AGG - tig0033048:17345-17364 None:intergenic 35.0%
AAGTAGGGACTAAACTTACA+AGG + tig0033048:17614-17633 Msa1450760:intron 35.0%
TTAAGACTGTTGTGGGATAA+AGG + tig0033048:18041-18060 Msa1450760:CDS 35.0%
ATAGTAGCACCTCACATATA+GGG - tig0033048:18193-18212 None:intergenic 35.0%
TATAGTAGCACCTCACATAT+AGG - tig0033048:18194-18213 None:intergenic 35.0%
! TGACATTTATGGTTTGCCTT+GGG - tig0033048:18243-18262 None:intergenic 35.0%
TATGGAGACACTCAAGAATA+TGG + tig0033048:18387-18406 Msa1450760:CDS 35.0%
ATGGAGACACTCAAGAATAT+GGG + tig0033048:18388-18407 Msa1450760:CDS 35.0%
! GTTAAAGACTTATTGGTTGG+CGG + tig0033048:18646-18665 Msa1450760:CDS 35.0%
! TTAAAGACTTATTGGTTGGC+GGG + tig0033048:18647-18666 Msa1450760:CDS 35.0%
!! AACTGGTTCTGTATTCATTG+CGG - tig0033048:18888-18907 None:intergenic 35.0%
GTTCGTATGTAGGATTTAAC+TGG - tig0033048:18905-18924 None:intergenic 35.0%
AGATCTTGACACAACAATGA+AGG + tig0033048:19125-19144 Msa1450760:CDS 35.0%
GAGGTTCATCAATTAGCAAA+CGG + tig0033048:19256-19275 Msa1450760:CDS 35.0%
ATCTTGTCTACACATACCTT+AGG - tig0033048:19310-19329 None:intergenic 35.0%
TAAGGTATGTGTAGACAAGA+TGG + tig0033048:19309-19328 Msa1450760:intron 35.0%
CAACCTAACACAATTGATTG+TGG + tig0033048:19430-19449 Msa1450760:CDS 35.0%
CTGCTAATATTACTACCTCT+TGG + tig0033048:19488-19507 Msa1450760:CDS 35.0%
TATTACTACCTCTTGGATGA+AGG + tig0033048:19495-19514 Msa1450760:CDS 35.0%
!!! CTGGTAGACCCTTATTTTTA+GGG - tig0033048:19593-19612 None:intergenic 35.0%
!!! ACTGGTAGACCCTTATTTTT+AGG - tig0033048:19594-19613 None:intergenic 35.0%
! GGTAATTTGTAAAGGTTCAC+TGG - tig0033048:19612-19631 None:intergenic 35.0%
TACAAATTACCTACTACTGC+CGG + tig0033048:19621-19640 Msa1450760:CDS 35.0%
ATTGACTAAATAGAGGCAAC+CGG - tig0033048:19643-19662 None:intergenic 35.0%
! TATTGAGGTTCTAGTGAGAT+AGG - tig0033048:19748-19767 None:intergenic 35.0%
TCACTAGAACCTCAATAGAT+GGG + tig0033048:19751-19770 Msa1450760:intron 35.0%
AAAATCATTGATCTCGATGC+CGG - tig0033048:19863-19882 None:intergenic 35.0%
! GCATCGAGATCAATGATTTT+GGG + tig0033048:19863-19882 Msa1450760:intron 35.0%
TCAGAAAAATTAACCTTGGC+AGG - tig0033048:20015-20034 None:intergenic 35.0%
!!! TATTGAGCTTGGATTGGTTT+TGG - tig0033048:20082-20101 None:intergenic 35.0%
TCTATCTATTGAGCTTGGAT+TGG - tig0033048:20088-20107 None:intergenic 35.0%
TAGGTAATCTGTCATCAGTT+GGG - tig0033048:20127-20146 None:intergenic 35.0%
TTAGGTAATCTGTCATCAGT+TGG - tig0033048:20128-20147 None:intergenic 35.0%
TAGTATGCACCTCAAAACAA+AGG - tig0033048:20355-20374 None:intergenic 35.0%
!!! TTTGTTTTGAGGTGCATACT+AGG + tig0033048:20354-20373 Msa1450760:intron 35.0%
!!! TTGTTTTGAGGTGCATACTA+GGG + tig0033048:20355-20374 Msa1450760:intron 35.0%
TGTATGCTTTGCGAAATGAT+TGG + tig0033048:20542-20561 Msa1450760:CDS 35.0%
GTATGCTTTGCGAAATGATT+GGG + tig0033048:20543-20562 Msa1450760:CDS 35.0%
!! GGTTTGTTGTTATTTCTAGC+TGG + tig0033048:20646-20665 Msa1450760:intron 35.0%
!!! TTGTTTTGTTTTGGTACTGC+TGG + tig0033048:20701-20720 Msa1450760:CDS 35.0%
!!! TGTTTTGTTTTGGTACTGCT+GGG + tig0033048:20702-20721 Msa1450760:CDS 35.0%
! ATGAACCTTCTTGTTTGTTG+TGG + tig0033048:20771-20790 Msa1450760:CDS 35.0%
TACATCCACAACAAACAAGA+AGG - tig0033048:20779-20798 None:intergenic 35.0%
ACAGCAACCAAAAACAAGAA+GGG - tig0033048:20802-20821 None:intergenic 35.0%
AACAGCAACCAAAAACAAGA+AGG - tig0033048:20803-20822 None:intergenic 35.0%
ATTAAGCTTCAACGCAAGCT+CGG - tig0033048:16083-16102 None:intergenic 40.0%
GTCCAATTCAAGGATATTCC+AGG - tig0033048:16106-16125 None:intergenic 40.0%
TGATCCAATACAAATAGGCG+AGG + tig0033048:16308-16327 Msa1450760:intron 40.0%
TGTACTTGGATGGAGACTAA+TGG + tig0033048:16344-16363 Msa1450760:intron 40.0%
AATTGCTCTAATCTGCTCAC+AGG - tig0033048:16442-16461 None:intergenic 40.0%
GTGAGCAGATTAGAGCAATT+AGG + tig0033048:16442-16461 Msa1450760:intron 40.0%
TAGGATACAAGTCCATGTGA+TGG + tig0033048:16471-16490 Msa1450760:intron 40.0%
! CTACCTTTGCATAGAGTGTT+GGG - tig0033048:16801-16820 None:intergenic 40.0%
GTCATCATCAATGTCCAACT+TGG - tig0033048:17056-17075 None:intergenic 40.0%
GCATTATGGCAACCAAGAAT+GGG - tig0033048:17746-17765 None:intergenic 40.0%
AGCATTATGGCAACCAAGAA+TGG - tig0033048:17747-17766 None:intergenic 40.0%
!! GTCCTTTCCTTTTTGTTTCC+TGG + tig0033048:17785-17804 Msa1450760:intron 40.0%
CACCAGGAAACAAAAAGGAA+AGG - tig0033048:17790-17809 None:intergenic 40.0%
GATGCTGTCGATGATGATTT+CGG + tig0033048:17962-17981 Msa1450760:CDS 40.0%
ATGCTGTCGATGATGATTTC+GGG + tig0033048:17963-17982 Msa1450760:CDS 40.0%
!! CATTTATGTTGTTTCCGGGT+TGG - tig0033048:17995-18014 None:intergenic 40.0%
GATGTTCTTGATGCGTATTC+CGG + tig0033048:18068-18087 Msa1450760:CDS 40.0%
ACGCATATTGAAATGTTCGC+CGG - tig0033048:18090-18109 None:intergenic 40.0%
!! GTTGATGGTGCAAAACAACA+TGG - tig0033048:18114-18133 None:intergenic 40.0%
CCACTCAAATTACCATATGC+CGG - tig0033048:18143-18162 None:intergenic 40.0%
CGGCATATGGTAATTTGAGT+GGG + tig0033048:18141-18160 Msa1450760:CDS 40.0%
TTGAGTGGGTACACCATTAA+AGG + tig0033048:18155-18174 Msa1450760:intron 40.0%
TGAGTGGGTACACCATTAAA+GGG + tig0033048:18156-18175 Msa1450760:intron 40.0%
GCATGCTTTATGCCCTTTAA+TGG - tig0033048:18171-18190 None:intergenic 40.0%
TAAAGCATGCCCTATATGTG+AGG + tig0033048:18181-18200 Msa1450760:intron 40.0%
! CTGACATTTATGGTTTGCCT+TGG - tig0033048:18244-18263 None:intergenic 40.0%
AGTAGAGTTCGAACAACAGA+TGG + tig0033048:18333-18352 Msa1450760:CDS 40.0%
TGCAGCACAAGAAAATCACA+AGG + tig0033048:18498-18517 Msa1450760:CDS 40.0%
! TAAAGACTTATTGGTTGGCG+GGG + tig0033048:18648-18667 Msa1450760:CDS 40.0%
ACGCAACTTAGTTCGTATGT+AGG - tig0033048:18915-18934 None:intergenic 40.0%
TTACTTGGCACCGTTTCTTA+TGG + tig0033048:18952-18971 Msa1450760:CDS 40.0%
! TTTACGTGTATAGAGGGCAT+TGG + tig0033048:19043-19062 Msa1450760:intron 40.0%
! TTTTTAACCTAGTGCTCTGG+AGG + tig0033048:19237-19256 Msa1450760:intron 40.0%
ATGGTATACCTTCATCCAAG+AGG - tig0033048:19506-19525 None:intergenic 40.0%
TATATAGGGAGCCCCTAATA+TGG + tig0033048:19566-19585 Msa1450760:intron 40.0%
CTCACTAGAACCTCAATAGA+TGG + tig0033048:19750-19769 Msa1450760:intron 40.0%
GCTTTCTATCCCATCTATTG+AGG - tig0033048:19763-19782 None:intergenic 40.0%
TCAGGGGAATTCATCTATTG+TGG - tig0033048:19815-19834 None:intergenic 40.0%
TAATGGAATTGCAGTGCCAT+TGG - tig0033048:19839-19858 None:intergenic 40.0%
!! GGCATCGAGATCAATGATTT+TGG + tig0033048:19862-19881 Msa1450760:intron 40.0%
AAGTTGAAGATCTTCAGCCT+TGG + tig0033048:20155-20174 Msa1450760:intron 40.0%
TTGTTTCCTTGTCATCTCCA+AGG - tig0033048:20175-20194 None:intergenic 40.0%
GGAGATGACAAGGAAACAAT+TGG + tig0033048:20176-20195 Msa1450760:CDS 40.0%
GGTCATTTGTATAGGTCCAT+CGG + tig0033048:20325-20344 Msa1450760:intron 40.0%
!!! TGTTTTGAGGTGCATACTAG+GGG + tig0033048:20356-20375 Msa1450760:intron 40.0%
!! TTTCTAGCTGGGAGATATGT+TGG + tig0033048:20658-20677 Msa1450760:intron 40.0%
!!! GGATGTACCCTTCTTGTTTT+TGG + tig0033048:20792-20811 Msa1450760:CDS 40.0%
CTTGCGTTGAAGCTTAATCC+TGG + tig0033048:16085-16104 Msa1450760:CDS 45.0%
GATTCCTCCAAACCCTAACT+TGG + tig0033048:16397-16416 Msa1450760:intron 45.0%
TTGTCCAAGTTAGGGTTTGG+AGG - tig0033048:16404-16423 None:intergenic 45.0%
CAGTTGTCCAAGTTAGGGTT+TGG - tig0033048:16407-16426 None:intergenic 45.0%
CTAGCATAAGGACCATCACA+TGG - tig0033048:16486-16505 None:intergenic 45.0%
! TGGTTGTTCTGAACATGGCA+AGG - tig0033048:16540-16559 None:intergenic 45.0%
GATGAGTTTGGAAGGGTTAG+AGG + tig0033048:16616-16635 Msa1450760:intron 45.0%
GCTACCTTTGCATAGAGTGT+TGG - tig0033048:16802-16821 None:intergenic 45.0%
ATGTAGCACTACGAGTCAAG+TGG + tig0033048:16851-16870 Msa1450760:CDS 45.0%
TGCTGATCTTGCAACCAAGT+TGG + tig0033048:17039-17058 Msa1450760:CDS 45.0%
TATCTCCAAGAACGAACCTG+TGG - tig0033048:17250-17269 None:intergenic 45.0%
ACAGGCCCTGGATTTAATCA+AGG + tig0033048:17275-17294 Msa1450760:CDS 45.0%
ATCAAACGGCAGGATTTACC+TGG - tig0033048:17335-17354 None:intergenic 45.0%
!! TCCTTTTTGTTTCCTGGTGC+AGG + tig0033048:17791-17810 Msa1450760:intron 45.0%
TCCTGCACCAGGAAACAAAA+AGG - tig0033048:17795-17814 None:intergenic 45.0%
TGATGTTATTGTCCTGCACC+AGG - tig0033048:17806-17825 None:intergenic 45.0%
TTACGCTTCATGCACAACGA+AGG - tig0033048:17936-17955 None:intergenic 45.0%
!! TGTTGTTTCCGGGTTGGTAT+GGG - tig0033048:17989-18008 None:intergenic 45.0%
!! ATGTTGTTTCCGGGTTGGTA+TGG - tig0033048:17990-18009 None:intergenic 45.0%
TTGCACCATCAACGACTTTC+CGG + tig0033048:18121-18140 Msa1450760:CDS 45.0%
ATATGCCGGAAAGTCGTTGA+TGG - tig0033048:18129-18148 None:intergenic 45.0%
ATCAACGACTTTCCGGCATA+TGG + tig0033048:18128-18147 Msa1450760:CDS 45.0%
CCGGCATATGGTAATTTGAG+TGG + tig0033048:18140-18159 Msa1450760:CDS 45.0%
! GTTGTGTTAGGAAGCGCAAA+AGG + tig0033048:18466-18485 Msa1450760:CDS 45.0%
GATGAATTCCCCTGATCCAA+TGG + tig0033048:19820-19839 Msa1450760:intron 45.0%
! ATTGCAGTGCCATTGGATCA+GGG - tig0033048:19832-19851 None:intergenic 45.0%
! AATTGCAGTGCCATTGGATC+AGG - tig0033048:19833-19852 None:intergenic 45.0%
CAAAGAAATAAGGCCTGCCA+AGG + tig0033048:19999-20018 Msa1450760:intron 45.0%
TGATGCGTCAGGAAAGAAGA+AGG + tig0033048:20227-20246 Msa1450760:CDS 45.0%
CATTTGTATAGGTCCATCGG+TGG + tig0033048:20328-20347 Msa1450760:intron 45.0%
TCAAAACAAAGGTCCACCGA+TGG - tig0033048:20344-20363 None:intergenic 45.0%
!!! ATCGGTGGACCTTTGTTTTG+AGG + tig0033048:20343-20362 Msa1450760:intron 45.0%
!! AATACTTATATAATTTAATA+TGG - tig0033048:17184-17203 None:intergenic 5.0%
!!! ATAAGTAAATTTTTTTTTAT+AGG + tig0033048:17569-17588 Msa1450760:intron 5.0%
!!! TAAGTAAATTTTTTTTTATA+GGG + tig0033048:17570-17589 Msa1450760:intron 5.0%
CTCATCACCACTCACTCACA+AGG - tig0033048:16263-16282 None:intergenic 50.0%
! CTTGTGAGTGAGTGGTGATG+AGG + tig0033048:16261-16280 Msa1450760:intron 50.0%
CTCAATCGGTGGCTAGCATA+AGG - tig0033048:16498-16517 None:intergenic 50.0%
! TATGCTAGCCACCGATTGAG+AGG + tig0033048:16498-16517 Msa1450760:intron 50.0%
CCTCAATGGGTCCTCTCAAT+CGG - tig0033048:16512-16531 None:intergenic 50.0%
TTGAGAGGACCCATTGAGGA+TGG + tig0033048:16513-16532 Msa1450760:intron 50.0%
TGAGAGGACCCATTGAGGAT+GGG + tig0033048:16514-16533 Msa1450760:intron 50.0%
TGGCCCAACACTCTATGCAA+AGG + tig0033048:16795-16814 Msa1450760:CDS 50.0%
GCAAAGGTAGCAGCGAAGAT+AGG + tig0033048:16811-16830 Msa1450760:CDS 50.0%
!! GTAGCAATTGGAGGTACCAC+AGG + tig0033048:17231-17250 Msa1450760:intron 50.0%
AGGTACCACAGGTTCGTTCT+TGG + tig0033048:17242-17261 Msa1450760:CDS 50.0%
GGAGATAAACAAACAGGCCC+TGG + tig0033048:17263-17282 Msa1450760:CDS 50.0%
TTGGAAGGTCTTCATGCCCA+AGG + tig0033048:18224-18243 Msa1450760:intron 50.0%
! TGATGAACCTCCAGAGCACT+AGG - tig0033048:19247-19266 None:intergenic 50.0%
! TTGCAGTGCCATTGGATCAG+GGG - tig0033048:19831-19850 None:intergenic 50.0%
GGCACTGCAATTCCATTAGC+CGG + tig0033048:19841-19860 Msa1450760:intron 50.0%
! TTGATCTCGATGCCGGCTAA+TGG - tig0033048:19856-19875 None:intergenic 50.0%
CTTCAGCCTTGGAGATGACA+AGG + tig0033048:20166-20185 Msa1450760:intron 50.0%
! CTTGTGGATGATGATGCGTC+AGG + tig0033048:20216-20235 Msa1450760:CDS 50.0%
TGTGGGCAACCGATTGTAGT+AGG + tig0033048:20304-20323 Msa1450760:intron 50.0%
GCAAGCTCGGAAGGTGACTT+GGG - tig0033048:16070-16089 None:intergenic 55.0%
AGCTTCAACGCAAGCTCGGA+AGG - tig0033048:16079-16098 None:intergenic 55.0%
CAATGGGTCCTCTCAATCGG+TGG - tig0033048:16509-16528 None:intergenic 55.0%
CCGATTGAGAGGACCCATTG+AGG + tig0033048:16509-16528 Msa1450760:intron 55.0%
TGGCAAGGCCCATCCTCAAT+GGG - tig0033048:16525-16544 None:intergenic 55.0%
ATGGCAAGGCCCATCCTCAA+TGG - tig0033048:16526-16545 None:intergenic 55.0%
GATCAGCAGCACCTTGTTCC+TGG - tig0033048:17027-17046 None:intergenic 55.0%
ATTTCGGGCCCATACCAACC+CGG + tig0033048:17978-17997 Msa1450760:CDS 55.0%
TTGCACCAACTGATGCGCTG+TGG - tig0033048:18359-18378 None:intergenic 55.0%
! ACTTATTGGTTGGCGGGGCT+TGG + tig0033048:18653-18672 Msa1450760:CDS 55.0%
!! GGTTCGTTGGCTTCGTCCTA+AGG + tig0033048:19291-19310 Msa1450760:CDS 55.0%
TAGAGGCAACCGGCAGTAGT+AGG - tig0033048:19633-19652 None:intergenic 55.0%
! GCTCGGAAGGTGACTTGGGA+GGG - tig0033048:16066-16085 None:intergenic 60.0%
! AGCTCGGAAGGTGACTTGGG+AGG - tig0033048:16067-16086 None:intergenic 60.0%
CGCAAGCTCGGAAGGTGACT+TGG - tig0033048:16071-16090 None:intergenic 60.0%
GGACGCGCCTCTCTAGCAAT+TGG - tig0033048:16242-16261 None:intergenic 60.0%
GATGGCCACAGCGCATCAGT+TGG + tig0033048:18351-18370 Msa1450760:CDS 60.0%
GGCGCGTCCTTGTGAGTGAG+TGG + tig0033048:16253-16272 Msa1450760:intron 65.0%
Chromosome Type Strat End Strand Name
tig0033048 gene 16049 20829 16049 ID=Msa1450760;Name=Msa1450760
tig0033048 mRNA 16049 20829 16049 ID=Msa1450760-mRNA-1;Parent=Msa1450760;Name=Msa1450760-mRNA-1;_AED=0.52;_eAED=0.55;_QI=0|0.28|0.26|0.53|1|1|15|0|644
tig0033048 exon 16049 16164 16049 ID=Msa1450760-mRNA-1:exon:17646;Parent=Msa1450760-mRNA-1
tig0033048 exon 16780 16879 16780 ID=Msa1450760-mRNA-1:exon:17647;Parent=Msa1450760-mRNA-1
tig0033048 exon 17007 17088 17007 ID=Msa1450760-mRNA-1:exon:17648;Parent=Msa1450760-mRNA-1
tig0033048 exon 17235 17335 17235 ID=Msa1450760-mRNA-1:exon:17649;Parent=Msa1450760-mRNA-1
tig0033048 exon 17813 17860 17813 ID=Msa1450760-mRNA-1:exon:17650;Parent=Msa1450760-mRNA-1
tig0033048 exon 17951 18162 17951 ID=Msa1450760-mRNA-1:exon:17651;Parent=Msa1450760-mRNA-1
tig0033048 exon 18264 18707 18264 ID=Msa1450760-mRNA-1:exon:17652;Parent=Msa1450760-mRNA-1
tig0033048 exon 18799 18975 18799 ID=Msa1450760-mRNA-1:exon:17653;Parent=Msa1450760-mRNA-1
tig0033048 exon 19056 19160 19056 ID=Msa1450760-mRNA-1:exon:17654;Parent=Msa1450760-mRNA-1
tig0033048 exon 19249 19312 19249 ID=Msa1450760-mRNA-1:exon:17655;Parent=Msa1450760-mRNA-1
tig0033048 exon 19421 19516 19421 ID=Msa1450760-mRNA-1:exon:17656;Parent=Msa1450760-mRNA-1
tig0033048 exon 19573 19642 19573 ID=Msa1450760-mRNA-1:exon:17657;Parent=Msa1450760-mRNA-1
tig0033048 exon 20172 20248 20172 ID=Msa1450760-mRNA-1:exon:17658;Parent=Msa1450760-mRNA-1
tig0033048 exon 20505 20582 20505 ID=Msa1450760-mRNA-1:exon:17659;Parent=Msa1450760-mRNA-1
tig0033048 exon 20665 20829 20665 ID=Msa1450760-mRNA-1:exon:17660;Parent=Msa1450760-mRNA-1
tig0033048 CDS 16049 16164 16049 ID=Msa1450760-mRNA-1:cds;Parent=Msa1450760-mRNA-1
tig0033048 CDS 16780 16879 16780 ID=Msa1450760-mRNA-1:cds;Parent=Msa1450760-mRNA-1
tig0033048 CDS 17007 17088 17007 ID=Msa1450760-mRNA-1:cds;Parent=Msa1450760-mRNA-1
tig0033048 CDS 17235 17335 17235 ID=Msa1450760-mRNA-1:cds;Parent=Msa1450760-mRNA-1
tig0033048 CDS 17813 17860 17813 ID=Msa1450760-mRNA-1:cds;Parent=Msa1450760-mRNA-1
tig0033048 CDS 17951 18162 17951 ID=Msa1450760-mRNA-1:cds;Parent=Msa1450760-mRNA-1
tig0033048 CDS 18264 18707 18264 ID=Msa1450760-mRNA-1:cds;Parent=Msa1450760-mRNA-1
tig0033048 CDS 18799 18975 18799 ID=Msa1450760-mRNA-1:cds;Parent=Msa1450760-mRNA-1
tig0033048 CDS 19056 19160 19056 ID=Msa1450760-mRNA-1:cds;Parent=Msa1450760-mRNA-1
tig0033048 CDS 19249 19312 19249 ID=Msa1450760-mRNA-1:cds;Parent=Msa1450760-mRNA-1
tig0033048 CDS 19421 19516 19421 ID=Msa1450760-mRNA-1:cds;Parent=Msa1450760-mRNA-1
tig0033048 CDS 19573 19642 19573 ID=Msa1450760-mRNA-1:cds;Parent=Msa1450760-mRNA-1
tig0033048 CDS 20172 20248 20172 ID=Msa1450760-mRNA-1:cds;Parent=Msa1450760-mRNA-1
tig0033048 CDS 20505 20582 20505 ID=Msa1450760-mRNA-1:cds;Parent=Msa1450760-mRNA-1
tig0033048 CDS 20665 20829 20665 ID=Msa1450760-mRNA-1:cds;Parent=Msa1450760-mRNA-1
Gene Sequence

>Msa1450760

ATGGAGCAGAGGAACCCTCCCAAGTCACCTTCCGAGCTTGCGTTGAAGCTTAATCCTGGAATATCCTTGAATTGGACAGAAAAAGAAGATCAAGCTCTTGAAGAAGCACTAGCTATGTTTGCATCATTTTCTGGCCCAACACTCTATGCAAAGGTAGCAGCGAAGATAGGAACCAAGAAAATACGAGATGTAGCACTACGAGTCAAGTGGATGAATATGTTTAAGAACTTTTTCCAGGAACAAGGTGCTGCTGATCTTGCAACCAAGTTGGACATTGATGATGACATCTATTTGGAAGCAATTGGAGGTACCACAGGTTCGTTCTTGGAGATAAACAAACAGGCCCTGGATTTAATCAAGGCATATCTTGCTTCTTTTGGTACTTTGAATTTACTCCAGGACAATAACATCAATCTTTTCGGCCTAATCAAAGACAATGTTGATAAACGTAAATATATGATGCTGTCGATGATGATTTCGGGCCCATACCAACCCGGAAACAACATAAATGTTTATCTAAGTCCATTGATTGATGATTTAAGACTGTTGTGGGATAAAGGAGTTGATGTTCTTGATGCGTATTCCGGCGAACATTTCAATATGCGTGCCATGTTGTTTTGCACCATCAACGACTTTCCGGCATATGGTAATTTGAGTGGTGAGATTGAAGCAAACATTGAAGCAAAAATTGAAGAAAAACTTGCAGCAAAAATTAAAGCGGAATGCAAAGTAGAGTTCGAACAACAGATGGCCACAGCGCATCAGTTGGTGCAAAAATCATTTATGGAGACACTCAAGAATATGGGCTTATCTGATACCTCCCAAACAAACAAACAAATTGAACCTTGTTCTGAAAAAGTTGTTGTGTTAGGAAGCGCAAAAGGTTCTTGTTCTGCAGCACAAGAAAATCACAAGGACAATTGGACCGTTATTGACAATGTTCAGAAAGTGATATGCATGATTTTGAAAGAGAAGCAATATCTAAGGTTAAAATTAGAACATGGTCCGGAAGTCATAAATTTCTTAATTGCACCAAAATGTGTTAAAGACTTATTGGTTGGCGGGGCTTGGCTTGACTATTCTATTCTACAAGTTTGGTGCACGTGTATGCACCGTCTTTGTATTGAAACAAACAAATCAAATGTGTTTGGATTTTTGGACCCAACAAAATTGAGTTTTAAATCAAAGTCCGCAATGAATACAGAACCAGTTAAATCCTACATACGAACTAAGTTGCGTGATATGAACAAAGTGTGTTACTTGGCACCGTTTCTTATGGAAGGGCATTGGAAATTAATCGTCATTTGTCCAAAGGATAATACATTGGTTGTCCTCTGTTCATTTAACAAAGATCTTGACACAACAATGAAGGAAATTGTTTCATCTGCTCTGGAGGTTCATCAATTAGCAAACGGTAATAAAAAAAAGGTTCGTTGGCTTCGTCCTAAGGCAAGGATGCAACCTAACACAATTGATTGTGGATATTATGTGATGAAGAACATGCTAGACATCGTCTCTGCTAATATTACTACCTCTTGGATGAAGGGAGCCCCTAATATGGACCCTAAAAATAAGGGTCTACCAGTGAACCTTTACAAATTACCTACTACTGCCGCCTTGGAGATGACAAGGAAACAATTGGTTGTTGTTTATGTTGTTCTTGTGGATGATGATGCGTCAGGAAAGAAGAAGGTATTCAATGATACAACAGCATTAACAGAAGATGAGCTGTATGCTTTGCGAAATGATTGGGCAACTTGTTTTCTTGAACTGGGAGATATGTTGGCACTTGAAGAGAGACCTTTTTTGTTTTGTTTTGGTACTGCTGGGAGATCTGTTATTTCTAGCATGACACTTCTTGTTTTGTTTTGTGTGTATGAACCTTCTTGTTTGTTGTGGATGTACCCTTCTTGTTTTTGGTTGCTGTTGACATAG

Protein sequence

>Msa1450760

MEQRNPPKSPSELALKLNPGISLNWTEKEDQALEEALAMFASFSGPTLYAKVAAKIGTKKIRDVALRVKWMNMFKNFFQEQGAADLATKLDIDDDIYLEAIGGTTGSFLEINKQALDLIKAYLASFGTLNLLQDNNINLFGLIKDNVDKRKYMMLSMMISGPYQPGNNINVYLSPLIDDLRLLWDKGVDVLDAYSGEHFNMRAMLFCTINDFPAYGNLSGEIEANIEAKIEEKLAAKIKAECKVEFEQQMATAHQLVQKSFMETLKNMGLSDTSQTNKQIEPCSEKVVVLGSAKGSCSAAQENHKDNWTVIDNVQKVICMILKEKQYLRLKLEHGPEVINFLIAPKCVKDLLVGGAWLDYSILQVWCTCMHRLCIETNKSNVFGFLDPTKLSFKSKSAMNTEPVKSYIRTKLRDMNKVCYLAPFLMEGHWKLIVICPKDNTLVVLCSFNKDLDTTMKEIVSSALEVHQLANGNKKKVRWLRPKARMQPNTIDCGYYVMKNMLDIVSANITTSWMKGAPNMDPKNKGLPVNLYKLPTTAALEMTRKQLVVVYVVLVDDDASGKKKVFNDTTALTEDELYALRNDWATCFLELGDMLALEERPFLFCFGTAGRSVISSMTLLVLFCVYEPSCLLWMYPSCFWLLLT*