Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1155630 | AES80166.1 | 48.092 | 131 | 56 | 6 | 132 | 253 | 6 | 133 | 3.33e-17 | 86.7 |
Msa1155630 | AES80166.1 | 88.372 | 129 | 15 | 0 | 2 | 130 | 4 | 132 | 5.04e-71 | 224 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1155630 | sp|Q41066|IBB2_PEA | 64.035 | 114 | 34 | 3 | 142 | 255 | 1 | 107 | 2.26e-41 | 140 |
Msa1155630 | sp|Q41066|IBB2_PEA | 45.133 | 113 | 48 | 6 | 21 | 131 | 5 | 105 | 8.62e-15 | 72.0 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1155630 | G7L4L8 | 48.092 | 131 | 56 | 6 | 132 | 253 | 6 | 133 | 1.59e-17 | 86.7 |
Msa1155630 | G7L4L8 | 88.372 | 129 | 15 | 0 | 2 | 130 | 4 | 132 | 2.41e-71 | 224 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0036230 | Msa1155630 | 0.825792 | 3.864472e-54 | -8.615850e-47 |
Msa0059880 | Msa1155630 | 0.806037 | 9.990150e-50 | -8.615850e-47 |
Msa0075560 | Msa1155630 | 0.800189 | 1.619714e-48 | -8.615850e-47 |
Msa0084160 | Msa1155630 | 0.805920 | 1.057554e-49 | -8.615850e-47 |
Msa0605460 | Msa1155630 | 0.800507 | 1.395062e-48 | -8.615850e-47 |
Msa0605480 | Msa1155630 | 0.804984 | 1.661577e-49 | -8.615850e-47 |
Msa0631700 | Msa1155630 | 0.802342 | 5.870572e-49 | -8.615850e-47 |
Msa0640290 | Msa1155630 | 0.801827 | 7.492820e-49 | -8.615850e-47 |
Msa0646440 | Msa1155630 | 0.800318 | 1.524571e-48 | -8.615850e-47 |
Msa0667640 | Msa1155630 | 0.800263 | 1.564657e-48 | -8.615850e-47 |
Msa0670360 | Msa1155630 | 0.814323 | 1.633826e-51 | -8.615850e-47 |
Msa0682730 | Msa1155630 | 0.804519 | 2.078016e-49 | -8.615850e-47 |
Msa0768670 | Msa1155630 | 0.804095 | 2.546203e-49 | -8.615850e-47 |
Msa0824860 | Msa1155630 | 0.809748 | 1.623525e-50 | -8.615850e-47 |
Msa0219210 | Msa1155630 | 0.807398 | 5.153408e-50 | -8.615850e-47 |
Msa0374040 | Msa1155630 | 0.807573 | 4.733002e-50 | -8.615850e-47 |
Msa0396700 | Msa1155630 | 0.801874 | 7.327152e-49 | -8.615850e-47 |
Msa0414480 | Msa1155630 | 0.802569 | 5.271720e-49 | -8.615850e-47 |
Msa0469550 | Msa1155630 | 0.804981 | 1.663946e-49 | -8.615850e-47 |
Msa1006940 | Msa1155630 | 0.801873 | 7.333048e-49 | -8.615850e-47 |
Msa1026050 | Msa1155630 | 0.807339 | 5.304414e-50 | -8.615850e-47 |
Msa1061670 | Msa1155630 | 0.825292 | 5.076191e-54 | -8.615850e-47 |
Msa1064940 | Msa1155630 | 0.800170 | 1.633882e-48 | -8.615850e-47 |
Msa1076830 | Msa1155630 | 0.810755 | 9.844930e-51 | -8.615850e-47 |
Msa1106960 | Msa1155630 | 0.822842 | 1.908386e-53 | -8.615850e-47 |
Msa0278940 | Msa1155630 | 0.814953 | 1.184589e-51 | -8.615850e-47 |
Msa0291750 | Msa1155630 | 0.816841 | 4.491022e-52 | -8.615850e-47 |
Msa0298270 | Msa1155630 | 0.831181 | 1.930340e-55 | -8.615850e-47 |
Msa0336630 | Msa1155630 | 0.807659 | 4.537652e-50 | -8.615850e-47 |
Msa0356250 | Msa1155630 | 0.805768 | 1.138042e-49 | -8.615850e-47 |
Msa1109880 | Msa1155630 | 0.811685 | 6.188169e-51 | -8.615850e-47 |
Msa1112730 | Msa1155630 | 0.838462 | 2.835457e-57 | -8.615850e-47 |
Msa1155630 | Msa1233650 | 0.815632 | 8.370679e-52 | -8.615850e-47 |
Msa1155630 | Msa1319290 | 0.807175 | 5.747925e-50 | -8.615850e-47 |
Msa1155630 | Msa1370930 | 0.805884 | 1.076057e-49 | -8.615850e-47 |
Msa1155630 | Msa1376070 | 0.820781 | 5.720802e-53 | -8.615850e-47 |
Msa1155630 | Msa1407670 | 0.805311 | 1.419166e-49 | -8.615850e-47 |
Msa1155630 | Msa1409600 | 0.845973 | 2.907055e-59 | -8.615850e-47 |
Msa1155630 | Msa1413090 | 0.816810 | 4.564733e-52 | -8.615850e-47 |
Msa1155630 | Msa1420020 | 0.801792 | 7.619079e-49 | -8.615850e-47 |
Msa1155630 | Msa1449770 | 0.809378 | 1.949076e-50 | -8.615850e-47 |
Msa1155630 | Msa1452920 | 0.800117 | 1.675232e-48 | -8.615850e-47 |
Msa1155630 | Msa1459610 | 0.814145 | 1.788459e-51 | -8.615850e-47 |
Msa0491800 | Msa1155630 | 0.811356 | 7.293093e-51 | -8.615850e-47 |
Msa0515130 | Msa1155630 | 0.807850 | 4.131926e-50 | -8.615850e-47 |
Msa0515260 | Msa1155630 | 0.807054 | 6.095823e-50 | -8.615850e-47 |
Msa0531030 | Msa1155630 | 0.815184 | 1.052821e-51 | -8.615850e-47 |
Msa0531080 | Msa1155630 | 0.809977 | 1.449302e-50 | -8.615850e-47 |
Msa0535570 | Msa1155630 | 0.825020 | 5.885969e-54 | -8.615850e-47 |
Msa0549970 | Msa1155630 | 0.811874 | 5.628452e-51 | -8.615850e-47 |
Msa0591490 | Msa1155630 | 0.829125 | 6.131980e-55 | -8.615850e-47 |
Msa0863840 | Msa1155630 | 0.806840 | 6.764727e-50 | -8.615850e-47 |
Msa0863850 | Msa1155630 | 0.803366 | 3.607995e-49 | -8.615850e-47 |
Msa0893840 | Msa1155630 | 0.809556 | 1.784750e-50 | -8.615850e-47 |
Msa0896920 | Msa1155630 | 0.822742 | 2.012730e-53 | -8.615850e-47 |
Msa0971880 | Msa1155630 | 0.808901 | 2.466467e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1155630 | MtrunA17_Chr7g0247581 | 88.372 | 129 | 15 | 0 | 2 | 130 | 4 | 132 | 4.63e-75 | 224 |
Msa1155630 | MtrunA17_Chr7g0247581 | 48.092 | 131 | 56 | 6 | 132 | 253 | 6 | 133 | 3.06e-21 | 86.7 |
Msa1155630 | MtrunA17_Chr7g0247571 | 86.822 | 129 | 15 | 2 | 133 | 259 | 30 | 158 | 3.13e-74 | 223 |
Msa1155630 | MtrunA17_Chr7g0247571 | 45.238 | 126 | 59 | 5 | 7 | 129 | 31 | 149 | 1.52e-22 | 90.9 |
Msa1155630 | MtrunA17_Chr7g0247471 | 80.808 | 99 | 17 | 1 | 154 | 252 | 14 | 110 | 6.64e-50 | 159 |
Msa1155630 | MtrunA17_Chr7g0247471 | 46.667 | 105 | 46 | 5 | 28 | 130 | 14 | 110 | 2.02e-15 | 70.5 |
Msa1155630 | MtrunA17_Chr7g0247481 | 71.000 | 100 | 28 | 1 | 151 | 249 | 1 | 100 | 3.75e-43 | 142 |
Msa1155630 | MtrunA17_Chr7g0247481 | 46.729 | 107 | 44 | 6 | 25 | 126 | 1 | 99 | 3.10e-17 | 75.1 |
Msa1155630 | MtrunA17_Chr7g0247461 | 64.800 | 125 | 31 | 6 | 137 | 252 | 12 | 132 | 3.59e-42 | 140 |
Msa1155630 | MtrunA17_Chr7g0247461 | 46.721 | 122 | 51 | 7 | 16 | 130 | 18 | 132 | 1.76e-19 | 82.0 |
Msa1155630 | MtrunA17_Chr7g0247531 | 58.654 | 104 | 39 | 2 | 152 | 252 | 1 | 103 | 3.50e-35 | 121 |
Msa1155630 | MtrunA17_Chr7g0247531 | 40.541 | 111 | 52 | 6 | 26 | 130 | 1 | 103 | 2.70e-11 | 58.9 |
Msa1155630 | MtrunA17_Chr7g0247511 | 53.509 | 114 | 49 | 3 | 142 | 252 | 1 | 113 | 1.67e-32 | 115 |
Msa1155630 | MtrunA17_Chr7g0247511 | 40.000 | 110 | 54 | 6 | 16 | 121 | 2 | 103 | 7.40e-12 | 60.8 |
Msa1155630 | MtrunA17_Chr7g0247521 | 54.622 | 119 | 43 | 4 | 142 | 259 | 1 | 109 | 1.32e-31 | 112 |
Msa1155630 | MtrunA17_Chr7g0247451 | 55.556 | 108 | 43 | 1 | 152 | 259 | 5 | 107 | 9.11e-28 | 102 |
Msa1155630 | MtrunA17_Chr7g0247541 | 46.729 | 107 | 48 | 4 | 145 | 249 | 3 | 102 | 5.23e-20 | 82.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 29 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAGTGTCACTGTGCTGATAT+TGG | 0.334596 | 7_4:-43594208 | Msa1155630:CDS |
AATGATGAAGTTAGCTTTGT+TGG | 0.339085 | 7_4:-43594389 | Msa1155630:CDS |
ACAGAAAGAGAGAGTAAGAA+TGG | 0.466784 | 7_4:-43594434 | Msa1155630:CDS |
CAGTTGAAGTGAAGCCCAAA+AGG | 0.468624 | 7_4:+43594362 | None:intergenic |
AACTTAGTGAGATCCACCTT+TGG | 0.468934 | 7_4:+43594078 | None:intergenic |
CCACCTTTGGAGTAGCTACA+TGG | 0.481606 | 7_4:+43594091 | None:intergenic |
TAAATGTATTTGTGAAGTAA+TGG | 0.484744 | 7_4:-43599187 | Msa1155630:CDS |
ATCACTCGAGTGCTCTTCAA+TGG | 0.489424 | 7_4:-43599066 | Msa1155630:CDS |
CAATGTATTTGTAGAGATGC+TGG | 0.516645 | 7_4:-43598961 | Msa1155630:CDS |
ATCACAGCATGCTGTTGTTG+TGG | 0.550411 | 7_4:+43594261 | None:intergenic |
ATCACTCAGCTCCTCTCCAA+TGG | 0.555707 | 7_4:-43594307 | Msa1155630:CDS |
ATCGTAAGTAGCTTCACCAT+TGG | 0.558223 | 7_4:+43594291 | None:intergenic |
CTGCTACTTGCCTCTTCACA+AGG | 0.558757 | 7_4:-43599214 | Msa1155630:CDS |
GGAGAGGAGCTGAGTGATGA+AGG | 0.560141 | 7_4:+43594312 | None:intergenic |
AAGAGGCAAGTAGCAGTACA+TGG | 0.590062 | 7_4:+43599221 | None:intergenic |
CCATGTAGCTACTCCAAAGG+TGG | 0.604280 | 7_4:-43594091 | Msa1155630:CDS |
ACATCTGCACAATAACAAGA+AGG | 0.622676 | 7_4:+43598883 | None:intergenic |
CAGCACAGTGACACTGAGGA+GGG | 0.627236 | 7_4:+43594215 | None:intergenic |
GAGGAAAAGATCTTGTGCAA+AGG | 0.628614 | 7_4:+43594155 | None:intergenic |
TCAGCACAGTGACACTGAGG+AGG | 0.630876 | 7_4:+43594214 | None:intergenic |
GCATCTCTACAAATACATTG+AGG | 0.633533 | 7_4:+43598964 | None:intergenic |
TGTGAGTGCTATGTAAAAGA+AGG | 0.646718 | 7_4:-43598997 | Msa1155630:CDS |
TCAGTGCAGCGACACTGTGG+AGG | 0.646863 | 7_4:+43594136 | None:intergenic |
GAACCATGTAGCTACTCCAA+AGG | 0.655168 | 7_4:-43594094 | Msa1155630:CDS |
ACGAACATCAACAATAGTTG+CGG | 0.656768 | 7_4:+43599107 | None:intergenic |
AAGTAGCTTCACCATTGGAG+AGG | 0.659642 | 7_4:+43594296 | None:intergenic |
TGGTTCATAGCAGAAGTCAG+TGG | 0.693755 | 7_4:+43594111 | None:intergenic |
GTATCAGTGCAGCGACACTG+TGG | 0.751185 | 7_4:+43594133 | None:intergenic |
ATATCAGCACAGTGACACTG+AGG | 0.763170 | 7_4:+43594211 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATATATATATATATATAA+GGG | + | chr7_4:43598079-43598098 | None:intergenic | 0.0% |
!! | TATATATATATATATATATA+AGG | + | chr7_4:43594933-43594952 | None:intergenic | 0.0% |
!! | TTAAAGAAAAAATAATACTT+TGG | + | chr7_4:43595822-43595841 | None:intergenic | 10.0% |
!!! | TTCAACAAATTTTATTATAT+AGG | - | chr7_4:43596052-43596071 | Msa1155630:intron | 10.0% |
!!! | AAATGAATGAATTTTAAAAT+AGG | + | chr7_4:43596645-43596664 | None:intergenic | 10.0% |
!! | TCTAAAAAGAAAATTAAATA+AGG | - | chr7_4:43597018-43597037 | Msa1155630:intron | 10.0% |
!! | CTAAAAAGAAAATTAAATAA+GGG | - | chr7_4:43597019-43597038 | Msa1155630:intron | 10.0% |
!!! | TTTTTTTTTTTTATTGTTGA+AGG | - | chr7_4:43597085-43597104 | Msa1155630:intron | 10.0% |
!! | CTTTCAAAAAAAAAAAATTA+TGG | - | chr7_4:43597227-43597246 | Msa1155630:intron | 10.0% |
!!! | AATTTTATAATAATAGAACA+TGG | - | chr7_4:43597315-43597334 | Msa1155630:intron | 10.0% |
!! | TAAATTACAAATAAATTTGT+TGG | - | chr7_4:43597495-43597514 | Msa1155630:intron | 10.0% |
!! | ATATATATATATCAATGTTA+TGG | + | chr7_4:43597801-43597820 | None:intergenic | 10.0% |
!!! | TTTAATAAAAGTACTTATTA+AGG | + | chr7_4:43598643-43598662 | None:intergenic | 10.0% |
!! | ATTATTTAGTATTAGAAACT+TGG | + | chr7_4:43594780-43594799 | None:intergenic | 15.0% |
!!! | AAAGTAAATTTAAAACATAG+TGG | - | chr7_4:43594889-43594908 | Msa1155630:intron | 15.0% |
!!! | AAGTAAATTTAAAACATAGT+GGG | - | chr7_4:43594890-43594909 | Msa1155630:intron | 15.0% |
!!! | CATTTTGAAACAATTTTTTT+TGG | + | chr7_4:43595719-43595738 | None:intergenic | 15.0% |
!! | TGTACATAGTATTAATTAAA+GGG | + | chr7_4:43595793-43595812 | None:intergenic | 15.0% |
!!! | AAATGACATTCATTTTAAAA+CGG | - | chr7_4:43595938-43595957 | Msa1155630:intron | 15.0% |
!!! | TTGAAATTTAGTTGTATTTT+AGG | + | chr7_4:43596037-43596056 | None:intergenic | 15.0% |
!! | CATTAAATAACTAATGTATA+TGG | + | chr7_4:43596271-43596290 | None:intergenic | 15.0% |
!! | ATGATAAACTCATAAATTTA+TGG | - | chr7_4:43597197-43597216 | Msa1155630:intron | 15.0% |
!! | TATCAAAATATCAATAATCA+AGG | - | chr7_4:43597388-43597407 | Msa1155630:intron | 15.0% |
!!! | TTTATTACTTTTTTAAACGT+GGG | + | chr7_4:43598401-43598420 | None:intergenic | 15.0% |
!!! | TTTTATTACTTTTTTAAACG+TGG | + | chr7_4:43598402-43598421 | None:intergenic | 15.0% |
!!! | TATATTTAAGTACTTTTCAT+TGG | - | chr7_4:43598580-43598599 | Msa1155630:intron | 15.0% |
!! | TAAATGTATTTGTGAAGTAA+TGG | - | chr7_4:43594113-43594132 | Msa1155630:CDS | 20.0% |
!! | TAATTAGATTCGAATTCTTT+CGG | - | chr7_4:43594652-43594671 | Msa1155630:intron | 20.0% |
!!! | TGCTAAACAATTTTTATGTT+GGG | - | chr7_4:43594675-43594694 | Msa1155630:intron | 20.0% |
!! | AAACGATTCTTCAAATTAAT+TGG | - | chr7_4:43594739-43594758 | Msa1155630:intron | 20.0% |
!!! | AGTAAATTTAAAACATAGTG+GGG | - | chr7_4:43594891-43594910 | Msa1155630:intron | 20.0% |
!!! | ATATATATATAAGGGTGTAT+GGG | + | chr7_4:43594924-43594943 | None:intergenic | 20.0% |
!!! | TATATATATATAAGGGTGTA+TGG | + | chr7_4:43594925-43594944 | None:intergenic | 20.0% |
!! | CTCATATTTACAATATCTTA+AGG | - | chr7_4:43595078-43595097 | Msa1155630:intron | 20.0% |
!!! | ACTAATTTCTTATAACCTTT+TGG | - | chr7_4:43595215-43595234 | Msa1155630:intron | 20.0% |
!! | GTGTACATAGTATTAATTAA+AGG | + | chr7_4:43595794-43595813 | None:intergenic | 20.0% |
!! | TAATATGTTTATTAAGCTTC+CGG | + | chr7_4:43596366-43596385 | None:intergenic | 20.0% |
!!! | TGAATGAATTTTAAAATAGG+TGG | + | chr7_4:43596642-43596661 | None:intergenic | 20.0% |
!! | ATGATGTGAGATATATTAAA+TGG | - | chr7_4:43596697-43596716 | Msa1155630:intron | 20.0% |
!! | TGTGAATAAATTAAAGTATG+AGG | - | chr7_4:43596977-43596996 | Msa1155630:intron | 20.0% |
!! | ACCTTTCAAAAATAATTAGA+AGG | - | chr7_4:43597264-43597283 | Msa1155630:intron | 20.0% |
!!! | ACCTTCTAATTATTTTTGAA+AGG | + | chr7_4:43597268-43597287 | None:intergenic | 20.0% |
!!! | AGTTTTTTACTGACATTTTA+AGG | + | chr7_4:43597294-43597313 | None:intergenic | 20.0% |
!!! | ATTACAAATAAATTTGTTGG+TGG | - | chr7_4:43597498-43597517 | Msa1155630:intron | 20.0% |
!!! | TTACAAATAAATTTGTTGGT+GGG | - | chr7_4:43597499-43597518 | Msa1155630:intron | 20.0% |
!! | TTTGTTAATATATCAAGTGT+GGG | + | chr7_4:43597588-43597607 | None:intergenic | 20.0% |
!!! | TTTTGTTAATATATCAAGTG+TGG | + | chr7_4:43597589-43597608 | None:intergenic | 20.0% |
!! | CTAAAAGATACATTCATAAA+AGG | - | chr7_4:43598000-43598019 | Msa1155630:intron | 20.0% |
!! | AATCTTATCATCTTAAGATT+TGG | - | chr7_4:43598187-43598206 | Msa1155630:intron | 20.0% |
!! | ATCTTATCATCTTAAGATTT+GGG | - | chr7_4:43598188-43598207 | Msa1155630:intron | 20.0% |
!! | GTAATAAAATATGTAGTACT+TGG | - | chr7_4:43598454-43598473 | Msa1155630:intron | 20.0% |
!!! | TATTACTCATTTTTACAAGT+GGG | + | chr7_4:43598522-43598541 | None:intergenic | 20.0% |
!! | TGTTTAATATGTAAAGATAC+TGG | - | chr7_4:43598555-43598574 | Msa1155630:intron | 20.0% |
!! | GTTTAATATGTAAAGATACT+GGG | - | chr7_4:43598556-43598575 | Msa1155630:intron | 20.0% |
! | AAAAAAAACAATTCATGTCG+AGG | - | chr7_4:43594482-43594501 | Msa1155630:intron | 25.0% |
! | AAGGAAAAAAAAAAACCTTG+AGG | + | chr7_4:43594525-43594544 | None:intergenic | 25.0% |
! | TGATAATAACAAGAAGAAGA+AGG | + | chr7_4:43594544-43594563 | None:intergenic | 25.0% |
!! | GTGCTAAACAATTTTTATGT+TGG | - | chr7_4:43594674-43594693 | Msa1155630:intron | 25.0% |
! | GAAACTTGGTATTCAATTTA+AGG | + | chr7_4:43594766-43594785 | None:intergenic | 25.0% |
!! | GTAAATTTAAAACATAGTGG+GGG | - | chr7_4:43594892-43594911 | Msa1155630:intron | 25.0% |
!!! | AGGATTTTCTTTTTTCGAAT+TGG | - | chr7_4:43596072-43596091 | Msa1155630:intron | 25.0% |
!!! | GGATTTTCTTTTTTCGAATT+GGG | - | chr7_4:43596073-43596092 | Msa1155630:intron | 25.0% |
!!! | GGTTTTGAGTTATATTTGTT+TGG | - | chr7_4:43596193-43596212 | Msa1155630:intron | 25.0% |
!! | TTTGAGTTATATTTGTTTGG+AGG | - | chr7_4:43596196-43596215 | Msa1155630:intron | 25.0% |
! | ACAATAATCATGCTTTAATC+CGG | - | chr7_4:43596344-43596363 | Msa1155630:intron | 25.0% |
!! | CTTTCTTTGTGTTTAATTTC+AGG | + | chr7_4:43596459-43596478 | None:intergenic | 25.0% |
!! | CTTTCTTTGTGTTTAATTTC+AGG | + | chr7_4:43596459-43596478 | None:intergenic | 25.0% |
! | ATGTTAATATCTCCCAATTT+CGG | + | chr7_4:43596943-43596962 | None:intergenic | 25.0% |
! | AAATTGGGAGATATTAACAT+AGG | - | chr7_4:43596943-43596962 | Msa1155630:intron | 25.0% |
! | AAATTATGGTATGTCTAGTA+CGG | - | chr7_4:43597241-43597260 | Msa1155630:intron | 25.0% |
! | ATTCACACAAAAAAAATACG+AGG | - | chr7_4:43597453-43597472 | Msa1155630:intron | 25.0% |
!!! | GCTTTAGTAGCTTTATATTT+GGG | - | chr7_4:43597534-43597553 | Msa1155630:intron | 25.0% |
! | AATACACACTATTTAGTGTT+TGG | - | chr7_4:43597640-43597659 | Msa1155630:intron | 25.0% |
!!! | AAAGTTTGTTTTTTTTTCCG+AGG | - | chr7_4:43597746-43597765 | Msa1155630:intron | 25.0% |
!!! | AAGTTTGTTTTTTTTTCCGA+GGG | - | chr7_4:43597747-43597766 | Msa1155630:intron | 25.0% |
! | GCAAAGTTATAACTAAAAAG+TGG | + | chr7_4:43597920-43597939 | None:intergenic | 25.0% |
! | ACACCTTCATAAAAATTAGT+TGG | - | chr7_4:43597946-43597965 | Msa1155630:intron | 25.0% |
!! | ACACCAACTAATTTTTATGA+AGG | + | chr7_4:43597952-43597971 | None:intergenic | 25.0% |
! | GTAATAAAATGTGTACTACT+TGG | - | chr7_4:43598413-43598432 | Msa1155630:intron | 25.0% |
! | TATTACTTCTTTATGCAAGT+GGG | + | chr7_4:43598440-43598459 | None:intergenic | 25.0% |
! | TTATTACTTCTTTATGCAAG+TGG | + | chr7_4:43598441-43598460 | None:intergenic | 25.0% |
! | TATTACTTCTTTATGCAAGT+GGG | + | chr7_4:43598440-43598459 | None:intergenic | 25.0% |
! | TTATTACTTCTTTATGCAAG+TGG | + | chr7_4:43598441-43598460 | None:intergenic | 25.0% |
! | GTAATAAAATGTGTACTACT+TGG | - | chr7_4:43598413-43598432 | Msa1155630:intron | 25.0% |
!!! | CTATTACTCATTTTTACAAG+TGG | + | chr7_4:43598523-43598542 | None:intergenic | 25.0% |
! | GAAAATGATAGAAGAAAGAA+AGG | - | chr7_4:43598739-43598758 | Msa1155630:intron | 25.0% |
!! | CATTTATTTTCCTTGTGAAG+AGG | + | chr7_4:43594099-43594118 | None:intergenic | 30.0% |
!! | TTATTTTTCACATGACCTCA+AGG | - | chr7_4:43594507-43594526 | Msa1155630:intron | 30.0% |
! | TAAGGTTTGAGATGAAGATT+TGG | - | chr7_4:43595096-43595115 | Msa1155630:intron | 30.0% |
! | GCCAATAATTCTAGTGTTTT+AGG | - | chr7_4:43595149-43595168 | Msa1155630:intron | 30.0% |
GCCTAAAACACTAGAATTAT+TGG | + | chr7_4:43595153-43595172 | None:intergenic | 30.0% | |
TAAAACACTAATACCACTGT+TGG | + | chr7_4:43595186-43595205 | None:intergenic | 30.0% | |
! | ACAGTGGTATTAGTGTTTTA+CGG | - | chr7_4:43595186-43595205 | Msa1155630:intron | 30.0% |
TCGATACATAGGTCAAATTT+GGG | - | chr7_4:43595288-43595307 | Msa1155630:intron | 30.0% | |
!! | AAACGACACTCATTTTGAAA+TGG | + | chr7_4:43595693-43595712 | None:intergenic | 30.0% |
!!! | TGACATTCATTTTAAAACGG+AGG | - | chr7_4:43595941-43595960 | Msa1155630:intron | 30.0% |
CTTACACTCCTCTAAATTAA+AGG | + | chr7_4:43596164-43596183 | None:intergenic | 30.0% | |
!!! | TTGTTTGGAGGCTTTTTTTT+TGG | - | chr7_4:43596208-43596227 | Msa1155630:intron | 30.0% |
!! | CGCTTTAGTAGCTTTATATT+TGG | - | chr7_4:43597533-43597552 | Msa1155630:intron | 30.0% |
TATTGTAGATTGTTAGCTGT+TGG | - | chr7_4:43598111-43598130 | Msa1155630:intron | 30.0% | |
TATAGTTGCATGTTCCTTAA+CGG | + | chr7_4:43598344-43598363 | None:intergenic | 30.0% | |
AAGGAACATGCAACTATATA+AGG | - | chr7_4:43598346-43598365 | Msa1155630:intron | 30.0% | |
CCAATGACAATACACTAATA+AGG | + | chr7_4:43598609-43598628 | None:intergenic | 30.0% | |
CCTTATTAGTGTATTGTCAT+TGG | - | chr7_4:43598606-43598625 | Msa1155630:intron | 30.0% | |
ATTTAAAGAGTCTACCATTG+TGG | - | chr7_4:43598697-43598716 | Msa1155630:intron | 30.0% | |
AAAAATTACATGTATACCCC+TGG | - | chr7_4:43598775-43598794 | Msa1155630:intron | 30.0% | |
TGTATCTTTCTTTGTGATGT+AGG | + | chr7_4:43598839-43598858 | None:intergenic | 30.0% | |
!! | AATGATGAAGTTAGCTTTGT+TGG | - | chr7_4:43598911-43598930 | Msa1155630:CDS | 30.0% |
ACGAACATCAACAATAGTTG+CGG | + | chr7_4:43594196-43594215 | None:intergenic | 35.0% | |
TGTGAGTGCTATGTAAAAGA+AGG | - | chr7_4:43594303-43594322 | Msa1155630:CDS | 35.0% | |
GCATCTCTACAAATACATTG+AGG | + | chr7_4:43594339-43594358 | None:intergenic | 35.0% | |
CAATGTATTTGTAGAGATGC+TGG | - | chr7_4:43594339-43594358 | Msa1155630:CDS | 35.0% | |
!!! | CAATCACATTTTTTGCAAGC+TGG | + | chr7_4:43594372-43594391 | None:intergenic | 35.0% |
ACATCTGCACAATAACAAGA+AGG | + | chr7_4:43594420-43594439 | None:intergenic | 35.0% | |
! | ATTCTCTTGCTCTAGTTTGT+TGG | + | chr7_4:43594600-43594619 | None:intergenic | 35.0% |
ATGGAGGATCCAATTAAGTA+TGG | + | chr7_4:43594706-43594725 | None:intergenic | 35.0% | |
AGAAACAACATAAGTAGTGC+TGG | + | chr7_4:43595125-43595144 | None:intergenic | 35.0% | |
CTTTGCAAAGAGAAACCAAA+AGG | + | chr7_4:43595233-43595252 | None:intergenic | 35.0% | |
CAAATTTGACCTATGTATCG+AGG | + | chr7_4:43595289-43595308 | None:intergenic | 35.0% | |
CTCGATACATAGGTCAAATT+TGG | - | chr7_4:43595287-43595306 | Msa1155630:intron | 35.0% | |
ATGTGTTTGTTTGATCACGT+TGG | - | chr7_4:43595364-43595383 | Msa1155630:intron | 35.0% | |
!! | TTTGATCACGTTGGTTTACT+TGG | - | chr7_4:43595373-43595392 | Msa1155630:intron | 35.0% |
CATATCAAAACTCACACCAA+TGG | + | chr7_4:43595424-43595443 | None:intergenic | 35.0% | |
AAATTTCTCGATATCCCACT+TGG | + | chr7_4:43595503-43595522 | None:intergenic | 35.0% | |
!! | AGTTTTGTCTGCTTGTGATA+TGG | + | chr7_4:43595617-43595636 | None:intergenic | 35.0% |
!!! | GACACTCATTTTGAAATGGA+AGG | + | chr7_4:43595689-43595708 | None:intergenic | 35.0% |
TTTAGTGCATATAGTGTGTG+TGG | - | chr7_4:43595983-43596002 | Msa1155630:intron | 35.0% | |
TTAGTGCATATAGTGTGTGT+GGG | - | chr7_4:43595984-43596003 | Msa1155630:intron | 35.0% | |
! | TTCAGAGGCCTTTAATTTAG+AGG | - | chr7_4:43596153-43596172 | Msa1155630:intron | 35.0% |
TGTTTCATCCACAAATCTGT+TGG | - | chr7_4:43596912-43596931 | Msa1155630:intron | 35.0% | |
TTGGGAGATATTAACATAGG+AGG | - | chr7_4:43596946-43596965 | Msa1155630:intron | 35.0% | |
AAAATTAAATAAGGGCCACG+AGG | - | chr7_4:43597027-43597046 | Msa1155630:intron | 35.0% | |
!! | GCTACTAAAGCGTTTCTTTT+AGG | + | chr7_4:43597525-43597544 | None:intergenic | 35.0% |
AACAAACTTTAGACTTCCCT+CGG | + | chr7_4:43597766-43597785 | None:intergenic | 35.0% | |
!! | AATTGTAAGAGCATCTCCAA+TGG | - | chr7_4:43598250-43598269 | Msa1155630:intron | 35.0% |
!! | ATTGTAAGAGCATCTCCAAT+GGG | - | chr7_4:43598251-43598270 | Msa1155630:intron | 35.0% |
AAAGTGGTCCTTGTTAAGTA+AGG | + | chr7_4:43598281-43598300 | None:intergenic | 35.0% | |
! | ATTTTTCTTCCTCCAATGGA+GGG | + | chr7_4:43598314-43598333 | None:intergenic | 35.0% |
! | AATTTTTCTTCCTCCAATGG+AGG | + | chr7_4:43598315-43598334 | None:intergenic | 35.0% |
! | CTCAATTTTTCTTCCTCCAA+TGG | + | chr7_4:43598318-43598337 | None:intergenic | 35.0% |
GAAAAATTGAGTTCCCGTTA+AGG | - | chr7_4:43598327-43598346 | Msa1155630:intron | 35.0% | |
ATAGTTGCATGTTCCTTAAC+GGG | + | chr7_4:43598343-43598362 | None:intergenic | 35.0% | |
AAGATACATTCCATCCACAA+TGG | + | chr7_4:43598714-43598733 | None:intergenic | 35.0% | |
AAGAAAGAAAGGAAGAGAGA+AGG | - | chr7_4:43598750-43598769 | Msa1155630:intron | 35.0% | |
AATTTATAGAGTGCAACCAG+GGG | + | chr7_4:43598794-43598813 | None:intergenic | 35.0% | |
CAATTTATAGAGTGCAACCA+GGG | + | chr7_4:43598795-43598814 | None:intergenic | 35.0% | |
TCAATTTATAGAGTGCAACC+AGG | + | chr7_4:43598796-43598815 | None:intergenic | 35.0% | |
TAGGAAACATGCAACTACAA+TGG | + | chr7_4:43598820-43598839 | None:intergenic | 35.0% | |
ACAGAAAGAGAGAGTAAGAA+TGG | - | chr7_4:43598866-43598885 | Msa1155630:CDS | 35.0% | |
!!! | AGCTTTGTTGGTTTTCCTTT+TGG | - | chr7_4:43598923-43598942 | Msa1155630:CDS | 35.0% |
!!! | GCTTTGTTGGTTTTCCTTTT+GGG | - | chr7_4:43598924-43598943 | Msa1155630:CDS | 35.0% |
TGGGTCAGTCCATACTTAAT+TGG | - | chr7_4:43594694-43594713 | Msa1155630:intron | 40.0% | |
TTGGATCCTCCATTAGTAGA+CGG | - | chr7_4:43594713-43594732 | Msa1155630:intron | 40.0% | |
! | TTTTCACCGTCTACTAATGG+AGG | + | chr7_4:43594722-43594741 | None:intergenic | 40.0% |
! | TCGTTTTCACCGTCTACTAA+TGG | + | chr7_4:43594725-43594744 | None:intergenic | 40.0% |
!! | ACTAATACCACTGTTGGCTT+GGG | + | chr7_4:43595180-43595199 | None:intergenic | 40.0% |
GATCTATCTCCTCGATACAT+AGG | - | chr7_4:43595277-43595296 | Msa1155630:intron | 40.0% | |
TGATATTTGTTCACCCGGTT+CGG | + | chr7_4:43595314-43595333 | None:intergenic | 40.0% | |
CACGATGATATTTGTTCACC+CGG | + | chr7_4:43595319-43595338 | None:intergenic | 40.0% | |
TGAACACCATGAATACCAAG+TGG | - | chr7_4:43595485-43595504 | Msa1155630:intron | 40.0% | |
GAACACCATGAATACCAAGT+GGG | - | chr7_4:43595486-43595505 | Msa1155630:intron | 40.0% | |
GATATCCCACTTGGTATTCA+TGG | + | chr7_4:43595494-43595513 | None:intergenic | 40.0% | |
AAAGTGTGTAAATGCGCTGA+AGG | - | chr7_4:43595570-43595589 | Msa1155630:intron | 40.0% | |
AAGTGTGTAAATGCGCTGAA+GGG | - | chr7_4:43595571-43595590 | Msa1155630:intron | 40.0% | |
ACAAGCAGACAAAACTGAGA+TGG | - | chr7_4:43595621-43595640 | Msa1155630:intron | 40.0% | |
ATATAGTGTGTGTGGGTAAG+TGG | - | chr7_4:43595991-43596010 | Msa1155630:intron | 40.0% | |
TATAGTGTGTGTGGGTAAGT+GGG | - | chr7_4:43595992-43596011 | Msa1155630:intron | 40.0% | |
!! | TTGTATTTTAGGCTGCAAGC+CGG | + | chr7_4:43596026-43596045 | None:intergenic | 40.0% |
GCAGACAACTTGACAATCAA+TGG | - | chr7_4:43596104-43596123 | Msa1155630:intron | 40.0% | |
CTGAACACATTGCGTAGATT+GGG | + | chr7_4:43596138-43596157 | None:intergenic | 40.0% | |
TCTGAACACATTGCGTAGAT+TGG | + | chr7_4:43596139-43596158 | None:intergenic | 40.0% | |
AATCTACGCAATGTGTTCAG+AGG | - | chr7_4:43596138-43596157 | Msa1155630:intron | 40.0% | |
TTATGTGAGCGAGTGACAAT+AGG | + | chr7_4:43596614-43596633 | None:intergenic | 40.0% | |
TTCATCCACAAATCTGTTGG+AGG | - | chr7_4:43596915-43596934 | Msa1155630:intron | 40.0% | |
TCATCCACAAATCTGTTGGA+GGG | - | chr7_4:43596916-43596935 | Msa1155630:intron | 40.0% | |
! | TTTTAGCAATCCACACCTCA+AGG | - | chr7_4:43597886-43597905 | Msa1155630:intron | 40.0% |
AAAGTGGAAATCACACCTTG+AGG | + | chr7_4:43597904-43597923 | None:intergenic | 40.0% | |
!! | GCTGTTGGTCTTCAATTTGT+TGG | - | chr7_4:43598126-43598145 | Msa1155630:intron | 40.0% |
ACAAGGACCACTTTCCATTA+AGG | - | chr7_4:43598287-43598306 | Msa1155630:intron | 40.0% | |
AATAAGTGATGTGTCACGTG+AGG | - | chr7_4:43598671-43598690 | Msa1155630:intron | 40.0% | |
AAAGAGTCTACCATTGTGGA+TGG | - | chr7_4:43598701-43598720 | Msa1155630:intron | 40.0% | |
ATCGTAAGTAGCTTCACCAT+TGG | + | chr7_4:43599012-43599031 | None:intergenic | 40.0% | |
!! | GAGGGATTGATTTTGTGCAA+AGG | + | chr7_4:43599070-43599089 | None:intergenic | 40.0% |
GAGGAAAAGATCTTGTGCAA+AGG | + | chr7_4:43599148-43599167 | None:intergenic | 40.0% | |
ATCACTCGAGTGCTCTTCAA+TGG | - | chr7_4:43594234-43594253 | Msa1155630:CDS | 45.0% | |
! | CACTAATACCACTGTTGGCT+TGG | + | chr7_4:43595181-43595200 | None:intergenic | 45.0% |
TGCTCCACACATCAAACCAT+TGG | - | chr7_4:43595405-43595424 | Msa1155630:intron | 45.0% | |
CACACCAATGGTTTGATGTG+TGG | + | chr7_4:43595412-43595431 | None:intergenic | 45.0% | |
GAAGGGTGAAACTGCATTGT+CGG | - | chr7_4:43595588-43595607 | Msa1155630:intron | 45.0% | |
AGCAGACAAAACTGAGATGG+TGG | - | chr7_4:43595624-43595643 | Msa1155630:intron | 45.0% | |
ATAGTGTGTGTGGGTAAGTG+GGG | - | chr7_4:43595993-43596012 | Msa1155630:intron | 45.0% | |
! | GAGGAGTGTAAGAACATCGA+AGG | - | chr7_4:43596172-43596191 | Msa1155630:intron | 45.0% |
GTTAAGTAAGGACCTCCCAT+TGG | + | chr7_4:43598269-43598288 | None:intergenic | 45.0% | |
TGGGAGGTCCTTACTTAACA+AGG | - | chr7_4:43598270-43598289 | Msa1155630:intron | 45.0% | |
TTCCATTAAGGACCCTCCAT+TGG | - | chr7_4:43598299-43598318 | Msa1155630:intron | 45.0% | |
TTAGTTACCCAGGAGAGAGA+GGG | + | chr7_4:43598373-43598392 | None:intergenic | 45.0% | |
TCTCTCTCCTGGGTAACTAA+CGG | - | chr7_4:43598373-43598392 | Msa1155630:intron | 45.0% | |
CAGTTGAAGTGAAGCCCAAA+AGG | + | chr7_4:43598941-43598960 | None:intergenic | 45.0% | |
AAGTAGCTTCACCATTGGAG+AGG | + | chr7_4:43599007-43599026 | None:intergenic | 45.0% | |
ATCACAGCATGCTGTTGTTG+TGG | + | chr7_4:43599042-43599061 | None:intergenic | 45.0% | |
ATATCAGCACAGTGACACTG+AGG | + | chr7_4:43599092-43599111 | None:intergenic | 45.0% | |
! | CAGTGTCACTGTGCTGATAT+TGG | - | chr7_4:43599092-43599111 | Msa1155630:CDS | 45.0% |
TGGTTCATAGCAGAAGTCAG+TGG | + | chr7_4:43599192-43599211 | None:intergenic | 45.0% | |
GAACCATGTAGCTACTCCAA+AGG | - | chr7_4:43599206-43599225 | Msa1155630:CDS | 45.0% | |
! | CTGCTACTTGCCTCTTCACA+AGG | - | chr7_4:43594086-43594105 | Msa1155630:CDS | 50.0% |
AGGTCAAATTTGGGCCGAAC+CGG | - | chr7_4:43595297-43595316 | Msa1155630:intron | 50.0% | |
!! | CTGAGATGGTGGACAAGTTC+AGG | - | chr7_4:43595635-43595654 | Msa1155630:intron | 50.0% |
TAGTGTGTGTGGGTAAGTGG+GGG | - | chr7_4:43595994-43596013 | Msa1155630:intron | 50.0% | |
TCTGTTGGAGGGACCGAAAT+TGG | - | chr7_4:43596927-43596946 | Msa1155630:intron | 50.0% | |
CTGTTGGAGGGACCGAAATT+GGG | - | chr7_4:43596928-43596947 | Msa1155630:intron | 50.0% | |
GGAAATCACACCTTGAGGTG+TGG | + | chr7_4:43597899-43597918 | None:intergenic | 50.0% | |
!! | GTAAGAGCATCTCCAATGGG+AGG | - | chr7_4:43598254-43598273 | Msa1155630:intron | 50.0% |
GGAGGGTCCTTAATGGAAAG+TGG | + | chr7_4:43598297-43598316 | None:intergenic | 50.0% | |
CTCCAATGGAGGGTCCTTAA+TGG | + | chr7_4:43598304-43598323 | None:intergenic | 50.0% | |
CATTAAGGACCCTCCATTGG+AGG | - | chr7_4:43598302-43598321 | Msa1155630:intron | 50.0% | |
TATAAGGACCCTCTCTCTCC+TGG | - | chr7_4:43598362-43598381 | Msa1155630:intron | 50.0% | |
ATAAGGACCCTCTCTCTCCT+GGG | - | chr7_4:43598363-43598382 | Msa1155630:intron | 50.0% | |
GTTAGTTACCCAGGAGAGAG+AGG | + | chr7_4:43598374-43598393 | None:intergenic | 50.0% | |
CTCTCTCCTGGGTAACTAAC+GGG | - | chr7_4:43598374-43598393 | Msa1155630:intron | 50.0% | |
ATCACTCAGCTCCTCTCCAA+TGG | - | chr7_4:43598993-43599012 | Msa1155630:CDS | 50.0% | |
!! | CCACCTTTGGAGTAGCTACA+TGG | + | chr7_4:43599212-43599231 | None:intergenic | 50.0% |
CCATGTAGCTACTCCAAAGG+TGG | - | chr7_4:43599209-43599228 | Msa1155630:CDS | 50.0% | |
GGTCAAATTTGGGCCGAACC+GGG | - | chr7_4:43595298-43595317 | Msa1155630:intron | 55.0% | |
AGTGTGTGTGGGTAAGTGGG+GGG | - | chr7_4:43595995-43596014 | Msa1155630:intron | 55.0% | |
CGGTCCCTCCAACAGATTTG+TGG | + | chr7_4:43596923-43596942 | None:intergenic | 55.0% | |
GCCACGAGGATCATGCATGT+AGG | - | chr7_4:43597041-43597060 | Msa1155630:intron | 55.0% | |
GCCTACATGCATGATCCTCG+TGG | + | chr7_4:43597045-43597064 | None:intergenic | 55.0% | |
GGAGAGGAGCTGAGTGATGA+AGG | + | chr7_4:43598991-43599010 | None:intergenic | 55.0% | |
CAGCACAGTGACACTGAGGA+GGG | + | chr7_4:43599088-43599107 | None:intergenic | 55.0% | |
TCAGCACAGTGACACTGAGG+AGG | + | chr7_4:43599089-43599108 | None:intergenic | 55.0% | |
GTATCAGTGCAGCGACACTG+TGG | + | chr7_4:43599170-43599189 | None:intergenic | 55.0% | |
GGCTTCTCCCAAGCCAACAG+TGG | - | chr7_4:43595170-43595189 | Msa1155630:intron | 60.0% | |
GGGTAAGTGGGGGGTTACAC+CGG | - | chr7_4:43596004-43596023 | Msa1155630:intron | 60.0% | |
GTGGGACCCGTTAGTTACCC+AGG | + | chr7_4:43598383-43598402 | None:intergenic | 60.0% | |
TCAGTGCAGCGACACTGTGG+AGG | + | chr7_4:43599167-43599186 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_4 | gene | 43594081 | 43599241 | 43594081 | ID=Msa1155630;Name=Msa1155630 |
chr7_4 | mRNA | 43594081 | 43599241 | 43594081 | ID=Msa1155630-mRNA-1;Parent=Msa1155630;Name=Msa1155630-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|0|0|2|0|259 |
chr7_4 | exon | 43598850 | 43599241 | 43598850 | ID=Msa1155630-mRNA-1:exon:11066;Parent=Msa1155630-mRNA-1 |
chr7_4 | exon | 43594081 | 43594468 | 43594081 | ID=Msa1155630-mRNA-1:exon:11065;Parent=Msa1155630-mRNA-1 |
chr7_4 | CDS | 43598850 | 43599241 | 43598850 | ID=Msa1155630-mRNA-1:cds;Parent=Msa1155630-mRNA-1 |
chr7_4 | CDS | 43594081 | 43594468 | 43594081 | ID=Msa1155630-mRNA-1:cds;Parent=Msa1155630-mRNA-1 |
Gene Sequence |
Protein sequence |