AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1155630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1155630 MtrunA17_Chr7g0247581 88.372 129 15 0 2 130 4 132 4.63e-75 224
Msa1155630 MtrunA17_Chr7g0247581 48.092 131 56 6 132 253 6 133 3.06e-21 86.7
Msa1155630 MtrunA17_Chr7g0247571 86.822 129 15 2 133 259 30 158 3.13e-74 223
Msa1155630 MtrunA17_Chr7g0247571 45.238 126 59 5 7 129 31 149 1.52e-22 90.9
Msa1155630 MtrunA17_Chr7g0247471 80.808 99 17 1 154 252 14 110 6.64e-50 159
Msa1155630 MtrunA17_Chr7g0247471 46.667 105 46 5 28 130 14 110 2.02e-15 70.5
Msa1155630 MtrunA17_Chr7g0247481 71.000 100 28 1 151 249 1 100 3.75e-43 142
Msa1155630 MtrunA17_Chr7g0247481 46.729 107 44 6 25 126 1 99 3.10e-17 75.1
Msa1155630 MtrunA17_Chr7g0247461 64.800 125 31 6 137 252 12 132 3.59e-42 140
Msa1155630 MtrunA17_Chr7g0247461 46.721 122 51 7 16 130 18 132 1.76e-19 82.0
Msa1155630 MtrunA17_Chr7g0247531 58.654 104 39 2 152 252 1 103 3.50e-35 121
Msa1155630 MtrunA17_Chr7g0247531 40.541 111 52 6 26 130 1 103 2.70e-11 58.9
Msa1155630 MtrunA17_Chr7g0247511 53.509 114 49 3 142 252 1 113 1.67e-32 115
Msa1155630 MtrunA17_Chr7g0247511 40.000 110 54 6 16 121 2 103 7.40e-12 60.8
Msa1155630 MtrunA17_Chr7g0247521 54.622 119 43 4 142 259 1 109 1.32e-31 112
Msa1155630 MtrunA17_Chr7g0247451 55.556 108 43 1 152 259 5 107 9.11e-28 102
Msa1155630 MtrunA17_Chr7g0247541 46.729 107 48 4 145 249 3 102 5.23e-20 82.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 29 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGTGTCACTGTGCTGATAT+TGG 0.334596 7_4:-43594208 Msa1155630:CDS
AATGATGAAGTTAGCTTTGT+TGG 0.339085 7_4:-43594389 Msa1155630:CDS
ACAGAAAGAGAGAGTAAGAA+TGG 0.466784 7_4:-43594434 Msa1155630:CDS
CAGTTGAAGTGAAGCCCAAA+AGG 0.468624 7_4:+43594362 None:intergenic
AACTTAGTGAGATCCACCTT+TGG 0.468934 7_4:+43594078 None:intergenic
CCACCTTTGGAGTAGCTACA+TGG 0.481606 7_4:+43594091 None:intergenic
TAAATGTATTTGTGAAGTAA+TGG 0.484744 7_4:-43599187 Msa1155630:CDS
ATCACTCGAGTGCTCTTCAA+TGG 0.489424 7_4:-43599066 Msa1155630:CDS
CAATGTATTTGTAGAGATGC+TGG 0.516645 7_4:-43598961 Msa1155630:CDS
ATCACAGCATGCTGTTGTTG+TGG 0.550411 7_4:+43594261 None:intergenic
ATCACTCAGCTCCTCTCCAA+TGG 0.555707 7_4:-43594307 Msa1155630:CDS
ATCGTAAGTAGCTTCACCAT+TGG 0.558223 7_4:+43594291 None:intergenic
CTGCTACTTGCCTCTTCACA+AGG 0.558757 7_4:-43599214 Msa1155630:CDS
GGAGAGGAGCTGAGTGATGA+AGG 0.560141 7_4:+43594312 None:intergenic
AAGAGGCAAGTAGCAGTACA+TGG 0.590062 7_4:+43599221 None:intergenic
CCATGTAGCTACTCCAAAGG+TGG 0.604280 7_4:-43594091 Msa1155630:CDS
ACATCTGCACAATAACAAGA+AGG 0.622676 7_4:+43598883 None:intergenic
CAGCACAGTGACACTGAGGA+GGG 0.627236 7_4:+43594215 None:intergenic
GAGGAAAAGATCTTGTGCAA+AGG 0.628614 7_4:+43594155 None:intergenic
TCAGCACAGTGACACTGAGG+AGG 0.630876 7_4:+43594214 None:intergenic
GCATCTCTACAAATACATTG+AGG 0.633533 7_4:+43598964 None:intergenic
TGTGAGTGCTATGTAAAAGA+AGG 0.646718 7_4:-43598997 Msa1155630:CDS
TCAGTGCAGCGACACTGTGG+AGG 0.646863 7_4:+43594136 None:intergenic
GAACCATGTAGCTACTCCAA+AGG 0.655168 7_4:-43594094 Msa1155630:CDS
ACGAACATCAACAATAGTTG+CGG 0.656768 7_4:+43599107 None:intergenic
AAGTAGCTTCACCATTGGAG+AGG 0.659642 7_4:+43594296 None:intergenic
TGGTTCATAGCAGAAGTCAG+TGG 0.693755 7_4:+43594111 None:intergenic
GTATCAGTGCAGCGACACTG+TGG 0.751185 7_4:+43594133 None:intergenic
ATATCAGCACAGTGACACTG+AGG 0.763170 7_4:+43594211 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAA+GGG + chr7_4:43598079-43598098 None:intergenic 0.0%
!! TATATATATATATATATATA+AGG + chr7_4:43594933-43594952 None:intergenic 0.0%
!! TTAAAGAAAAAATAATACTT+TGG + chr7_4:43595822-43595841 None:intergenic 10.0%
!!! TTCAACAAATTTTATTATAT+AGG - chr7_4:43596052-43596071 Msa1155630:intron 10.0%
!!! AAATGAATGAATTTTAAAAT+AGG + chr7_4:43596645-43596664 None:intergenic 10.0%
!! TCTAAAAAGAAAATTAAATA+AGG - chr7_4:43597018-43597037 Msa1155630:intron 10.0%
!! CTAAAAAGAAAATTAAATAA+GGG - chr7_4:43597019-43597038 Msa1155630:intron 10.0%
!!! TTTTTTTTTTTTATTGTTGA+AGG - chr7_4:43597085-43597104 Msa1155630:intron 10.0%
!! CTTTCAAAAAAAAAAAATTA+TGG - chr7_4:43597227-43597246 Msa1155630:intron 10.0%
!!! AATTTTATAATAATAGAACA+TGG - chr7_4:43597315-43597334 Msa1155630:intron 10.0%
!! TAAATTACAAATAAATTTGT+TGG - chr7_4:43597495-43597514 Msa1155630:intron 10.0%
!! ATATATATATATCAATGTTA+TGG + chr7_4:43597801-43597820 None:intergenic 10.0%
!!! TTTAATAAAAGTACTTATTA+AGG + chr7_4:43598643-43598662 None:intergenic 10.0%
!! ATTATTTAGTATTAGAAACT+TGG + chr7_4:43594780-43594799 None:intergenic 15.0%
!!! AAAGTAAATTTAAAACATAG+TGG - chr7_4:43594889-43594908 Msa1155630:intron 15.0%
!!! AAGTAAATTTAAAACATAGT+GGG - chr7_4:43594890-43594909 Msa1155630:intron 15.0%
!!! CATTTTGAAACAATTTTTTT+TGG + chr7_4:43595719-43595738 None:intergenic 15.0%
!! TGTACATAGTATTAATTAAA+GGG + chr7_4:43595793-43595812 None:intergenic 15.0%
!!! AAATGACATTCATTTTAAAA+CGG - chr7_4:43595938-43595957 Msa1155630:intron 15.0%
!!! TTGAAATTTAGTTGTATTTT+AGG + chr7_4:43596037-43596056 None:intergenic 15.0%
!! CATTAAATAACTAATGTATA+TGG + chr7_4:43596271-43596290 None:intergenic 15.0%
!! ATGATAAACTCATAAATTTA+TGG - chr7_4:43597197-43597216 Msa1155630:intron 15.0%
!! TATCAAAATATCAATAATCA+AGG - chr7_4:43597388-43597407 Msa1155630:intron 15.0%
!!! TTTATTACTTTTTTAAACGT+GGG + chr7_4:43598401-43598420 None:intergenic 15.0%
!!! TTTTATTACTTTTTTAAACG+TGG + chr7_4:43598402-43598421 None:intergenic 15.0%
!!! TATATTTAAGTACTTTTCAT+TGG - chr7_4:43598580-43598599 Msa1155630:intron 15.0%
!! TAAATGTATTTGTGAAGTAA+TGG - chr7_4:43594113-43594132 Msa1155630:CDS 20.0%
!! TAATTAGATTCGAATTCTTT+CGG - chr7_4:43594652-43594671 Msa1155630:intron 20.0%
!!! TGCTAAACAATTTTTATGTT+GGG - chr7_4:43594675-43594694 Msa1155630:intron 20.0%
!! AAACGATTCTTCAAATTAAT+TGG - chr7_4:43594739-43594758 Msa1155630:intron 20.0%
!!! AGTAAATTTAAAACATAGTG+GGG - chr7_4:43594891-43594910 Msa1155630:intron 20.0%
!!! ATATATATATAAGGGTGTAT+GGG + chr7_4:43594924-43594943 None:intergenic 20.0%
!!! TATATATATATAAGGGTGTA+TGG + chr7_4:43594925-43594944 None:intergenic 20.0%
!! CTCATATTTACAATATCTTA+AGG - chr7_4:43595078-43595097 Msa1155630:intron 20.0%
!!! ACTAATTTCTTATAACCTTT+TGG - chr7_4:43595215-43595234 Msa1155630:intron 20.0%
!! GTGTACATAGTATTAATTAA+AGG + chr7_4:43595794-43595813 None:intergenic 20.0%
!! TAATATGTTTATTAAGCTTC+CGG + chr7_4:43596366-43596385 None:intergenic 20.0%
!!! TGAATGAATTTTAAAATAGG+TGG + chr7_4:43596642-43596661 None:intergenic 20.0%
!! ATGATGTGAGATATATTAAA+TGG - chr7_4:43596697-43596716 Msa1155630:intron 20.0%
!! TGTGAATAAATTAAAGTATG+AGG - chr7_4:43596977-43596996 Msa1155630:intron 20.0%
!! ACCTTTCAAAAATAATTAGA+AGG - chr7_4:43597264-43597283 Msa1155630:intron 20.0%
!!! ACCTTCTAATTATTTTTGAA+AGG + chr7_4:43597268-43597287 None:intergenic 20.0%
!!! AGTTTTTTACTGACATTTTA+AGG + chr7_4:43597294-43597313 None:intergenic 20.0%
!!! ATTACAAATAAATTTGTTGG+TGG - chr7_4:43597498-43597517 Msa1155630:intron 20.0%
!!! TTACAAATAAATTTGTTGGT+GGG - chr7_4:43597499-43597518 Msa1155630:intron 20.0%
!! TTTGTTAATATATCAAGTGT+GGG + chr7_4:43597588-43597607 None:intergenic 20.0%
!!! TTTTGTTAATATATCAAGTG+TGG + chr7_4:43597589-43597608 None:intergenic 20.0%
!! CTAAAAGATACATTCATAAA+AGG - chr7_4:43598000-43598019 Msa1155630:intron 20.0%
!! AATCTTATCATCTTAAGATT+TGG - chr7_4:43598187-43598206 Msa1155630:intron 20.0%
!! ATCTTATCATCTTAAGATTT+GGG - chr7_4:43598188-43598207 Msa1155630:intron 20.0%
!! GTAATAAAATATGTAGTACT+TGG - chr7_4:43598454-43598473 Msa1155630:intron 20.0%
!!! TATTACTCATTTTTACAAGT+GGG + chr7_4:43598522-43598541 None:intergenic 20.0%
!! TGTTTAATATGTAAAGATAC+TGG - chr7_4:43598555-43598574 Msa1155630:intron 20.0%
!! GTTTAATATGTAAAGATACT+GGG - chr7_4:43598556-43598575 Msa1155630:intron 20.0%
! AAAAAAAACAATTCATGTCG+AGG - chr7_4:43594482-43594501 Msa1155630:intron 25.0%
! AAGGAAAAAAAAAAACCTTG+AGG + chr7_4:43594525-43594544 None:intergenic 25.0%
! TGATAATAACAAGAAGAAGA+AGG + chr7_4:43594544-43594563 None:intergenic 25.0%
!! GTGCTAAACAATTTTTATGT+TGG - chr7_4:43594674-43594693 Msa1155630:intron 25.0%
! GAAACTTGGTATTCAATTTA+AGG + chr7_4:43594766-43594785 None:intergenic 25.0%
!! GTAAATTTAAAACATAGTGG+GGG - chr7_4:43594892-43594911 Msa1155630:intron 25.0%
!!! AGGATTTTCTTTTTTCGAAT+TGG - chr7_4:43596072-43596091 Msa1155630:intron 25.0%
!!! GGATTTTCTTTTTTCGAATT+GGG - chr7_4:43596073-43596092 Msa1155630:intron 25.0%
!!! GGTTTTGAGTTATATTTGTT+TGG - chr7_4:43596193-43596212 Msa1155630:intron 25.0%
!! TTTGAGTTATATTTGTTTGG+AGG - chr7_4:43596196-43596215 Msa1155630:intron 25.0%
! ACAATAATCATGCTTTAATC+CGG - chr7_4:43596344-43596363 Msa1155630:intron 25.0%
!! CTTTCTTTGTGTTTAATTTC+AGG + chr7_4:43596459-43596478 None:intergenic 25.0%
!! CTTTCTTTGTGTTTAATTTC+AGG + chr7_4:43596459-43596478 None:intergenic 25.0%
! ATGTTAATATCTCCCAATTT+CGG + chr7_4:43596943-43596962 None:intergenic 25.0%
! AAATTGGGAGATATTAACAT+AGG - chr7_4:43596943-43596962 Msa1155630:intron 25.0%
! AAATTATGGTATGTCTAGTA+CGG - chr7_4:43597241-43597260 Msa1155630:intron 25.0%
! ATTCACACAAAAAAAATACG+AGG - chr7_4:43597453-43597472 Msa1155630:intron 25.0%
!!! GCTTTAGTAGCTTTATATTT+GGG - chr7_4:43597534-43597553 Msa1155630:intron 25.0%
! AATACACACTATTTAGTGTT+TGG - chr7_4:43597640-43597659 Msa1155630:intron 25.0%
!!! AAAGTTTGTTTTTTTTTCCG+AGG - chr7_4:43597746-43597765 Msa1155630:intron 25.0%
!!! AAGTTTGTTTTTTTTTCCGA+GGG - chr7_4:43597747-43597766 Msa1155630:intron 25.0%
! GCAAAGTTATAACTAAAAAG+TGG + chr7_4:43597920-43597939 None:intergenic 25.0%
! ACACCTTCATAAAAATTAGT+TGG - chr7_4:43597946-43597965 Msa1155630:intron 25.0%
!! ACACCAACTAATTTTTATGA+AGG + chr7_4:43597952-43597971 None:intergenic 25.0%
! GTAATAAAATGTGTACTACT+TGG - chr7_4:43598413-43598432 Msa1155630:intron 25.0%
! TATTACTTCTTTATGCAAGT+GGG + chr7_4:43598440-43598459 None:intergenic 25.0%
! TTATTACTTCTTTATGCAAG+TGG + chr7_4:43598441-43598460 None:intergenic 25.0%
! TATTACTTCTTTATGCAAGT+GGG + chr7_4:43598440-43598459 None:intergenic 25.0%
! TTATTACTTCTTTATGCAAG+TGG + chr7_4:43598441-43598460 None:intergenic 25.0%
! GTAATAAAATGTGTACTACT+TGG - chr7_4:43598413-43598432 Msa1155630:intron 25.0%
!!! CTATTACTCATTTTTACAAG+TGG + chr7_4:43598523-43598542 None:intergenic 25.0%
! GAAAATGATAGAAGAAAGAA+AGG - chr7_4:43598739-43598758 Msa1155630:intron 25.0%
!! CATTTATTTTCCTTGTGAAG+AGG + chr7_4:43594099-43594118 None:intergenic 30.0%
!! TTATTTTTCACATGACCTCA+AGG - chr7_4:43594507-43594526 Msa1155630:intron 30.0%
! TAAGGTTTGAGATGAAGATT+TGG - chr7_4:43595096-43595115 Msa1155630:intron 30.0%
! GCCAATAATTCTAGTGTTTT+AGG - chr7_4:43595149-43595168 Msa1155630:intron 30.0%
GCCTAAAACACTAGAATTAT+TGG + chr7_4:43595153-43595172 None:intergenic 30.0%
TAAAACACTAATACCACTGT+TGG + chr7_4:43595186-43595205 None:intergenic 30.0%
! ACAGTGGTATTAGTGTTTTA+CGG - chr7_4:43595186-43595205 Msa1155630:intron 30.0%
TCGATACATAGGTCAAATTT+GGG - chr7_4:43595288-43595307 Msa1155630:intron 30.0%
!! AAACGACACTCATTTTGAAA+TGG + chr7_4:43595693-43595712 None:intergenic 30.0%
!!! TGACATTCATTTTAAAACGG+AGG - chr7_4:43595941-43595960 Msa1155630:intron 30.0%
CTTACACTCCTCTAAATTAA+AGG + chr7_4:43596164-43596183 None:intergenic 30.0%
!!! TTGTTTGGAGGCTTTTTTTT+TGG - chr7_4:43596208-43596227 Msa1155630:intron 30.0%
!! CGCTTTAGTAGCTTTATATT+TGG - chr7_4:43597533-43597552 Msa1155630:intron 30.0%
TATTGTAGATTGTTAGCTGT+TGG - chr7_4:43598111-43598130 Msa1155630:intron 30.0%
TATAGTTGCATGTTCCTTAA+CGG + chr7_4:43598344-43598363 None:intergenic 30.0%
AAGGAACATGCAACTATATA+AGG - chr7_4:43598346-43598365 Msa1155630:intron 30.0%
CCAATGACAATACACTAATA+AGG + chr7_4:43598609-43598628 None:intergenic 30.0%
CCTTATTAGTGTATTGTCAT+TGG - chr7_4:43598606-43598625 Msa1155630:intron 30.0%
ATTTAAAGAGTCTACCATTG+TGG - chr7_4:43598697-43598716 Msa1155630:intron 30.0%
AAAAATTACATGTATACCCC+TGG - chr7_4:43598775-43598794 Msa1155630:intron 30.0%
TGTATCTTTCTTTGTGATGT+AGG + chr7_4:43598839-43598858 None:intergenic 30.0%
!! AATGATGAAGTTAGCTTTGT+TGG - chr7_4:43598911-43598930 Msa1155630:CDS 30.0%
ACGAACATCAACAATAGTTG+CGG + chr7_4:43594196-43594215 None:intergenic 35.0%
TGTGAGTGCTATGTAAAAGA+AGG - chr7_4:43594303-43594322 Msa1155630:CDS 35.0%
GCATCTCTACAAATACATTG+AGG + chr7_4:43594339-43594358 None:intergenic 35.0%
CAATGTATTTGTAGAGATGC+TGG - chr7_4:43594339-43594358 Msa1155630:CDS 35.0%
!!! CAATCACATTTTTTGCAAGC+TGG + chr7_4:43594372-43594391 None:intergenic 35.0%
ACATCTGCACAATAACAAGA+AGG + chr7_4:43594420-43594439 None:intergenic 35.0%
! ATTCTCTTGCTCTAGTTTGT+TGG + chr7_4:43594600-43594619 None:intergenic 35.0%
ATGGAGGATCCAATTAAGTA+TGG + chr7_4:43594706-43594725 None:intergenic 35.0%
AGAAACAACATAAGTAGTGC+TGG + chr7_4:43595125-43595144 None:intergenic 35.0%
CTTTGCAAAGAGAAACCAAA+AGG + chr7_4:43595233-43595252 None:intergenic 35.0%
CAAATTTGACCTATGTATCG+AGG + chr7_4:43595289-43595308 None:intergenic 35.0%
CTCGATACATAGGTCAAATT+TGG - chr7_4:43595287-43595306 Msa1155630:intron 35.0%
ATGTGTTTGTTTGATCACGT+TGG - chr7_4:43595364-43595383 Msa1155630:intron 35.0%
!! TTTGATCACGTTGGTTTACT+TGG - chr7_4:43595373-43595392 Msa1155630:intron 35.0%
CATATCAAAACTCACACCAA+TGG + chr7_4:43595424-43595443 None:intergenic 35.0%
AAATTTCTCGATATCCCACT+TGG + chr7_4:43595503-43595522 None:intergenic 35.0%
!! AGTTTTGTCTGCTTGTGATA+TGG + chr7_4:43595617-43595636 None:intergenic 35.0%
!!! GACACTCATTTTGAAATGGA+AGG + chr7_4:43595689-43595708 None:intergenic 35.0%
TTTAGTGCATATAGTGTGTG+TGG - chr7_4:43595983-43596002 Msa1155630:intron 35.0%
TTAGTGCATATAGTGTGTGT+GGG - chr7_4:43595984-43596003 Msa1155630:intron 35.0%
! TTCAGAGGCCTTTAATTTAG+AGG - chr7_4:43596153-43596172 Msa1155630:intron 35.0%
TGTTTCATCCACAAATCTGT+TGG - chr7_4:43596912-43596931 Msa1155630:intron 35.0%
TTGGGAGATATTAACATAGG+AGG - chr7_4:43596946-43596965 Msa1155630:intron 35.0%
AAAATTAAATAAGGGCCACG+AGG - chr7_4:43597027-43597046 Msa1155630:intron 35.0%
!! GCTACTAAAGCGTTTCTTTT+AGG + chr7_4:43597525-43597544 None:intergenic 35.0%
AACAAACTTTAGACTTCCCT+CGG + chr7_4:43597766-43597785 None:intergenic 35.0%
!! AATTGTAAGAGCATCTCCAA+TGG - chr7_4:43598250-43598269 Msa1155630:intron 35.0%
!! ATTGTAAGAGCATCTCCAAT+GGG - chr7_4:43598251-43598270 Msa1155630:intron 35.0%
AAAGTGGTCCTTGTTAAGTA+AGG + chr7_4:43598281-43598300 None:intergenic 35.0%
! ATTTTTCTTCCTCCAATGGA+GGG + chr7_4:43598314-43598333 None:intergenic 35.0%
! AATTTTTCTTCCTCCAATGG+AGG + chr7_4:43598315-43598334 None:intergenic 35.0%
! CTCAATTTTTCTTCCTCCAA+TGG + chr7_4:43598318-43598337 None:intergenic 35.0%
GAAAAATTGAGTTCCCGTTA+AGG - chr7_4:43598327-43598346 Msa1155630:intron 35.0%
ATAGTTGCATGTTCCTTAAC+GGG + chr7_4:43598343-43598362 None:intergenic 35.0%
AAGATACATTCCATCCACAA+TGG + chr7_4:43598714-43598733 None:intergenic 35.0%
AAGAAAGAAAGGAAGAGAGA+AGG - chr7_4:43598750-43598769 Msa1155630:intron 35.0%
AATTTATAGAGTGCAACCAG+GGG + chr7_4:43598794-43598813 None:intergenic 35.0%
CAATTTATAGAGTGCAACCA+GGG + chr7_4:43598795-43598814 None:intergenic 35.0%
TCAATTTATAGAGTGCAACC+AGG + chr7_4:43598796-43598815 None:intergenic 35.0%
TAGGAAACATGCAACTACAA+TGG + chr7_4:43598820-43598839 None:intergenic 35.0%
ACAGAAAGAGAGAGTAAGAA+TGG - chr7_4:43598866-43598885 Msa1155630:CDS 35.0%
!!! AGCTTTGTTGGTTTTCCTTT+TGG - chr7_4:43598923-43598942 Msa1155630:CDS 35.0%
!!! GCTTTGTTGGTTTTCCTTTT+GGG - chr7_4:43598924-43598943 Msa1155630:CDS 35.0%
TGGGTCAGTCCATACTTAAT+TGG - chr7_4:43594694-43594713 Msa1155630:intron 40.0%
TTGGATCCTCCATTAGTAGA+CGG - chr7_4:43594713-43594732 Msa1155630:intron 40.0%
! TTTTCACCGTCTACTAATGG+AGG + chr7_4:43594722-43594741 None:intergenic 40.0%
! TCGTTTTCACCGTCTACTAA+TGG + chr7_4:43594725-43594744 None:intergenic 40.0%
!! ACTAATACCACTGTTGGCTT+GGG + chr7_4:43595180-43595199 None:intergenic 40.0%
GATCTATCTCCTCGATACAT+AGG - chr7_4:43595277-43595296 Msa1155630:intron 40.0%
TGATATTTGTTCACCCGGTT+CGG + chr7_4:43595314-43595333 None:intergenic 40.0%
CACGATGATATTTGTTCACC+CGG + chr7_4:43595319-43595338 None:intergenic 40.0%
TGAACACCATGAATACCAAG+TGG - chr7_4:43595485-43595504 Msa1155630:intron 40.0%
GAACACCATGAATACCAAGT+GGG - chr7_4:43595486-43595505 Msa1155630:intron 40.0%
GATATCCCACTTGGTATTCA+TGG + chr7_4:43595494-43595513 None:intergenic 40.0%
AAAGTGTGTAAATGCGCTGA+AGG - chr7_4:43595570-43595589 Msa1155630:intron 40.0%
AAGTGTGTAAATGCGCTGAA+GGG - chr7_4:43595571-43595590 Msa1155630:intron 40.0%
ACAAGCAGACAAAACTGAGA+TGG - chr7_4:43595621-43595640 Msa1155630:intron 40.0%
ATATAGTGTGTGTGGGTAAG+TGG - chr7_4:43595991-43596010 Msa1155630:intron 40.0%
TATAGTGTGTGTGGGTAAGT+GGG - chr7_4:43595992-43596011 Msa1155630:intron 40.0%
!! TTGTATTTTAGGCTGCAAGC+CGG + chr7_4:43596026-43596045 None:intergenic 40.0%
GCAGACAACTTGACAATCAA+TGG - chr7_4:43596104-43596123 Msa1155630:intron 40.0%
CTGAACACATTGCGTAGATT+GGG + chr7_4:43596138-43596157 None:intergenic 40.0%
TCTGAACACATTGCGTAGAT+TGG + chr7_4:43596139-43596158 None:intergenic 40.0%
AATCTACGCAATGTGTTCAG+AGG - chr7_4:43596138-43596157 Msa1155630:intron 40.0%
TTATGTGAGCGAGTGACAAT+AGG + chr7_4:43596614-43596633 None:intergenic 40.0%
TTCATCCACAAATCTGTTGG+AGG - chr7_4:43596915-43596934 Msa1155630:intron 40.0%
TCATCCACAAATCTGTTGGA+GGG - chr7_4:43596916-43596935 Msa1155630:intron 40.0%
! TTTTAGCAATCCACACCTCA+AGG - chr7_4:43597886-43597905 Msa1155630:intron 40.0%
AAAGTGGAAATCACACCTTG+AGG + chr7_4:43597904-43597923 None:intergenic 40.0%
!! GCTGTTGGTCTTCAATTTGT+TGG - chr7_4:43598126-43598145 Msa1155630:intron 40.0%
ACAAGGACCACTTTCCATTA+AGG - chr7_4:43598287-43598306 Msa1155630:intron 40.0%
AATAAGTGATGTGTCACGTG+AGG - chr7_4:43598671-43598690 Msa1155630:intron 40.0%
AAAGAGTCTACCATTGTGGA+TGG - chr7_4:43598701-43598720 Msa1155630:intron 40.0%
ATCGTAAGTAGCTTCACCAT+TGG + chr7_4:43599012-43599031 None:intergenic 40.0%
!! GAGGGATTGATTTTGTGCAA+AGG + chr7_4:43599070-43599089 None:intergenic 40.0%
GAGGAAAAGATCTTGTGCAA+AGG + chr7_4:43599148-43599167 None:intergenic 40.0%
ATCACTCGAGTGCTCTTCAA+TGG - chr7_4:43594234-43594253 Msa1155630:CDS 45.0%
! CACTAATACCACTGTTGGCT+TGG + chr7_4:43595181-43595200 None:intergenic 45.0%
TGCTCCACACATCAAACCAT+TGG - chr7_4:43595405-43595424 Msa1155630:intron 45.0%
CACACCAATGGTTTGATGTG+TGG + chr7_4:43595412-43595431 None:intergenic 45.0%
GAAGGGTGAAACTGCATTGT+CGG - chr7_4:43595588-43595607 Msa1155630:intron 45.0%
AGCAGACAAAACTGAGATGG+TGG - chr7_4:43595624-43595643 Msa1155630:intron 45.0%
ATAGTGTGTGTGGGTAAGTG+GGG - chr7_4:43595993-43596012 Msa1155630:intron 45.0%
! GAGGAGTGTAAGAACATCGA+AGG - chr7_4:43596172-43596191 Msa1155630:intron 45.0%
GTTAAGTAAGGACCTCCCAT+TGG + chr7_4:43598269-43598288 None:intergenic 45.0%
TGGGAGGTCCTTACTTAACA+AGG - chr7_4:43598270-43598289 Msa1155630:intron 45.0%
TTCCATTAAGGACCCTCCAT+TGG - chr7_4:43598299-43598318 Msa1155630:intron 45.0%
TTAGTTACCCAGGAGAGAGA+GGG + chr7_4:43598373-43598392 None:intergenic 45.0%
TCTCTCTCCTGGGTAACTAA+CGG - chr7_4:43598373-43598392 Msa1155630:intron 45.0%
CAGTTGAAGTGAAGCCCAAA+AGG + chr7_4:43598941-43598960 None:intergenic 45.0%
AAGTAGCTTCACCATTGGAG+AGG + chr7_4:43599007-43599026 None:intergenic 45.0%
ATCACAGCATGCTGTTGTTG+TGG + chr7_4:43599042-43599061 None:intergenic 45.0%
ATATCAGCACAGTGACACTG+AGG + chr7_4:43599092-43599111 None:intergenic 45.0%
! CAGTGTCACTGTGCTGATAT+TGG - chr7_4:43599092-43599111 Msa1155630:CDS 45.0%
TGGTTCATAGCAGAAGTCAG+TGG + chr7_4:43599192-43599211 None:intergenic 45.0%
GAACCATGTAGCTACTCCAA+AGG - chr7_4:43599206-43599225 Msa1155630:CDS 45.0%
! CTGCTACTTGCCTCTTCACA+AGG - chr7_4:43594086-43594105 Msa1155630:CDS 50.0%
AGGTCAAATTTGGGCCGAAC+CGG - chr7_4:43595297-43595316 Msa1155630:intron 50.0%
!! CTGAGATGGTGGACAAGTTC+AGG - chr7_4:43595635-43595654 Msa1155630:intron 50.0%
TAGTGTGTGTGGGTAAGTGG+GGG - chr7_4:43595994-43596013 Msa1155630:intron 50.0%
TCTGTTGGAGGGACCGAAAT+TGG - chr7_4:43596927-43596946 Msa1155630:intron 50.0%
CTGTTGGAGGGACCGAAATT+GGG - chr7_4:43596928-43596947 Msa1155630:intron 50.0%
GGAAATCACACCTTGAGGTG+TGG + chr7_4:43597899-43597918 None:intergenic 50.0%
!! GTAAGAGCATCTCCAATGGG+AGG - chr7_4:43598254-43598273 Msa1155630:intron 50.0%
GGAGGGTCCTTAATGGAAAG+TGG + chr7_4:43598297-43598316 None:intergenic 50.0%
CTCCAATGGAGGGTCCTTAA+TGG + chr7_4:43598304-43598323 None:intergenic 50.0%
CATTAAGGACCCTCCATTGG+AGG - chr7_4:43598302-43598321 Msa1155630:intron 50.0%
TATAAGGACCCTCTCTCTCC+TGG - chr7_4:43598362-43598381 Msa1155630:intron 50.0%
ATAAGGACCCTCTCTCTCCT+GGG - chr7_4:43598363-43598382 Msa1155630:intron 50.0%
GTTAGTTACCCAGGAGAGAG+AGG + chr7_4:43598374-43598393 None:intergenic 50.0%
CTCTCTCCTGGGTAACTAAC+GGG - chr7_4:43598374-43598393 Msa1155630:intron 50.0%
ATCACTCAGCTCCTCTCCAA+TGG - chr7_4:43598993-43599012 Msa1155630:CDS 50.0%
!! CCACCTTTGGAGTAGCTACA+TGG + chr7_4:43599212-43599231 None:intergenic 50.0%
CCATGTAGCTACTCCAAAGG+TGG - chr7_4:43599209-43599228 Msa1155630:CDS 50.0%
GGTCAAATTTGGGCCGAACC+GGG - chr7_4:43595298-43595317 Msa1155630:intron 55.0%
AGTGTGTGTGGGTAAGTGGG+GGG - chr7_4:43595995-43596014 Msa1155630:intron 55.0%
CGGTCCCTCCAACAGATTTG+TGG + chr7_4:43596923-43596942 None:intergenic 55.0%
GCCACGAGGATCATGCATGT+AGG - chr7_4:43597041-43597060 Msa1155630:intron 55.0%
GCCTACATGCATGATCCTCG+TGG + chr7_4:43597045-43597064 None:intergenic 55.0%
GGAGAGGAGCTGAGTGATGA+AGG + chr7_4:43598991-43599010 None:intergenic 55.0%
CAGCACAGTGACACTGAGGA+GGG + chr7_4:43599088-43599107 None:intergenic 55.0%
TCAGCACAGTGACACTGAGG+AGG + chr7_4:43599089-43599108 None:intergenic 55.0%
GTATCAGTGCAGCGACACTG+TGG + chr7_4:43599170-43599189 None:intergenic 55.0%
GGCTTCTCCCAAGCCAACAG+TGG - chr7_4:43595170-43595189 Msa1155630:intron 60.0%
GGGTAAGTGGGGGGTTACAC+CGG - chr7_4:43596004-43596023 Msa1155630:intron 60.0%
GTGGGACCCGTTAGTTACCC+AGG + chr7_4:43598383-43598402 None:intergenic 60.0%
TCAGTGCAGCGACACTGTGG+AGG + chr7_4:43599167-43599186 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 43594081 43599241 43594081 ID=Msa1155630;Name=Msa1155630
chr7_4 mRNA 43594081 43599241 43594081 ID=Msa1155630-mRNA-1;Parent=Msa1155630;Name=Msa1155630-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|0|0|2|0|259
chr7_4 exon 43598850 43599241 43598850 ID=Msa1155630-mRNA-1:exon:11066;Parent=Msa1155630-mRNA-1
chr7_4 exon 43594081 43594468 43594081 ID=Msa1155630-mRNA-1:exon:11065;Parent=Msa1155630-mRNA-1
chr7_4 CDS 43598850 43599241 43598850 ID=Msa1155630-mRNA-1:cds;Parent=Msa1155630-mRNA-1
chr7_4 CDS 43594081 43594468 43594081 ID=Msa1155630-mRNA-1:cds;Parent=Msa1155630-mRNA-1
Gene Sequence

>Msa1155630

ATGTACTGCTACTTGCCTCTTCACAAGGAAAATAAATGTATTTGTGAAGTAATGGAGTCGAACAAGAATACATTTGTGAAGTTATCTCTGTTGCTTTTGCTCTTATGCTTCACCGCAACTATTGTTGATGTTCGTTTTGATTCAACATCATTCATCACTCGAGTGCTCTTCAATGGTGAAGCTACTTATGATGTTATTTATCATTCAGCATGCTGTGATGAATGTGAGTGCTATGTAAAAGAAGGTCAATTGTTTCCTCAATGTATTTGTAGAGATGCTGGATGTCAACCAGCTTGCAAAAAATGTGATTGCATTAGAGAATCAGAATCAGAGACTCCTTCTTGTTATTGTGCAGATGTCATGTTGTTCACTTGTTATGACTTATGTAAACAATACATAATACTACAGAAAGAGAGAGTAAGAATGGAGTTAATCATGAACAAGAATGCAATGATGAAGTTAGCTTTGTTGGTTTTCCTTTTGGGCTTCACTTCAACTGTTGTTGATGCTCGTTTCGATCGAGCATCCTTCATCACTCAGCTCCTCTCCAATGGTGAAGCTACTTACGATGTCAAATCCACAACAACAGCATGCTGTGATTTATGCCTTTGCACAAAATCAATCCCTCCTCAGTGTCACTGTGCTGATATTGGAGAAAAATGTCACTCAGCTTGCAAAAGATGCCTTTGCACAAGATCTTTTCCTCCACAGTGTCGCTGCACTGATACCACTGACTTCTGCTATGAACCATGTAGCTACTCCAAAGGTGGATCTCACTAA

Protein sequence

>Msa1155630

MYCYLPLHKENKCICEVMESNKNTFVKLSLLLLLLCFTATIVDVRFDSTSFITRVLFNGEATYDVIYHSACCDECECYVKEGQLFPQCICRDAGCQPACKKCDCIRESESETPSCYCADVMLFTCYDLCKQYIILQKERVRMELIMNKNAMMKLALLVFLLGFTSTVVDARFDRASFITQLLSNGEATYDVKSTTTACCDLCLCTKSIPPQCHCADIGEKCHSACKRCLCTRSFPPQCRCTDTTDFCYEPCSYSKGGSH*