AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0278940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0278940 MtrunA17_Chr2g0292291 92.918 353 25 0 1 353 1 353 0.0 666
Msa0278940 MtrunA17_Chr2g0292261 76.353 351 81 2 4 353 3 352 0.0 532
Msa0278940 MtrunA17_Chr2g0292271 75.143 350 82 4 7 353 6 353 0.0 514
Msa0278940 MtrunA17_Chr2g0292241 68.451 355 105 4 4 353 3 355 2.89e-177 496
Msa0278940 MtrunA17_Chr2g0292181 68.376 351 108 2 4 352 12 361 2.57e-175 491
Msa0278940 MtrunA17_Chr2g0292211 67.733 344 109 2 11 353 21 363 1.64e-170 479
Msa0278940 MtrunA17_Chr2g0292251 69.760 334 95 3 23 351 21 353 7.86e-166 466
Msa0278940 MtrunA17_Chr2g0292111 64.589 353 120 2 4 352 3 354 3.94e-162 457
Msa0278940 MtrunA17_Chr2g0291751 64.589 353 120 2 4 352 3 354 2.17e-161 455
Msa0278940 MtrunA17_Chr2g0292151 64.689 354 119 3 4 353 3 354 3.99e-159 449
Msa0278940 MtrunA17_Chr2g0292091 62.353 340 120 3 14 353 13 344 8.50e-148 421
Msa0278940 MtrunA17_Chr2g0292101 61.224 343 125 3 11 353 11 345 2.21e-143 409
Msa0278940 MtrunA17_Chr7g0258811 59.740 308 122 2 26 332 65 371 6.67e-123 358
Msa0278940 MtrunA17_Chr2g0292281 74.380 242 49 3 112 353 9 237 2.05e-119 344
Msa0278940 MtrunA17_Chr1g0175561 56.774 310 132 2 24 332 18 326 5.25e-116 339
Msa0278940 MtrunA17_Chr8g0372601 50.329 304 149 2 30 333 30 331 1.70e-103 307
Msa0278940 MtrunA17_Chr5g0404721 50.495 303 148 2 30 332 30 330 7.56e-102 303
Msa0278940 MtrunA17_Chr4g0070951 48.665 337 162 5 1 333 1 330 5.25e-100 298
Msa0278940 MtrunA17_Chr1g0155611 49.505 303 152 1 30 332 46 347 3.07e-97 292
Msa0278940 MtrunA17_Chr2g0320091 48.052 308 151 2 25 332 20 318 4.40e-97 291
Msa0278940 MtrunA17_Chr5g0402581 47.213 305 158 2 28 332 25 326 2.91e-96 289
Msa0278940 MtrunA17_Chr3g0129051 47.840 324 155 4 6 328 8 318 3.18e-96 288
Msa0278940 MtrunA17_Chr5g0402571 47.557 307 154 3 28 332 25 326 3.39e-95 286
Msa0278940 MtrunA17_Chr4g0043391 49.351 308 147 4 27 332 24 324 3.50e-95 286
Msa0278940 MtrunA17_Chr4g0038171 49.351 308 147 4 27 332 21 321 6.31e-95 285
Msa0278940 MtrunA17_Chr3g0106921 47.531 324 155 5 11 332 10 320 2.98e-94 283
Msa0278940 MtrunA17_Chr2g0320071 45.538 325 167 3 8 332 3 317 1.59e-93 281
Msa0278940 MtrunA17_Chr3g0114451 47.557 307 151 3 26 332 22 318 2.48e-93 281
Msa0278940 MtrunA17_Chr4g0013171 47.649 319 155 5 16 332 13 321 3.47e-93 281
Msa0278940 MtrunA17_Chr2g0299691 48.377 308 153 3 29 333 55 359 4.03e-93 282
Msa0278940 MtrunA17_Chr7g0244461 46.106 321 155 4 12 332 10 312 8.40e-93 280
Msa0278940 MtrunA17_Chr2g0320101 48.052 308 150 4 25 332 20 317 1.61e-92 279
Msa0278940 MtrunA17_Chr4g0013181 50.000 302 139 5 33 332 62 353 8.08e-91 276
Msa0278940 MtrunA17_Chr4g0038151 46.108 334 161 6 1 332 5 321 1.86e-90 274
Msa0278940 MtrunA17_Chr4g0038161 46.707 334 158 6 1 332 5 320 2.20e-90 273
Msa0278940 MtrunA17_Chr2g0320061 44.923 325 170 3 8 332 3 318 2.82e-90 273
Msa0278940 MtrunA17_Chr2g0320031 46.732 306 154 3 27 332 23 319 6.43e-90 272
Msa0278940 MtrunA17_Chr2g0320051 45.231 325 169 3 8 332 3 318 7.83e-90 272
Msa0278940 MtrunA17_Chr4g0013201 46.452 310 156 3 23 332 39 338 9.54e-90 273
Msa0278940 MtrunA17_Chr5g0432351 45.970 335 164 6 1 332 1 321 2.57e-89 271
Msa0278940 MtrunA17_Chr5g0432341 47.419 310 151 5 28 334 23 323 5.44e-89 270
Msa0278940 MtrunA17_Chr3g0129061 46.296 324 160 4 6 328 8 318 6.20e-89 270
Msa0278940 MtrunA17_Chr4g0068621 46.053 304 158 4 30 332 38 336 8.64e-89 270
Msa0278940 MtrunA17_Chr5g0432441 45.988 324 163 4 12 332 12 326 2.29e-88 268
Msa0278940 MtrunA17_Chr3g0129041 46.646 328 161 4 6 332 8 322 9.64e-88 267
Msa0278940 MtrunA17_Chr7g0244451 47.869 305 149 3 28 332 22 316 1.26e-87 266
Msa0278940 MtrunA17_Chr4g0013191 46.926 309 151 6 27 332 42 340 3.14e-87 266
Msa0278940 MtrunA17_Chr4g0013721 45.955 309 159 5 25 332 95 396 1.80e-86 267
Msa0278940 MtrunA17_Chr5g0400331 47.039 304 156 4 33 332 29 331 2.14e-86 264
Msa0278940 MtrunA17_Chr3g0107881 48.065 310 150 5 26 332 23 324 8.20e-86 262
Msa0278940 MtrunA17_Chr5g0432331 46.774 310 153 6 28 334 54 354 1.71e-85 262
Msa0278940 MtrunA17_Chr5g0438021 43.574 319 166 4 15 332 20 325 3.31e-85 260
Msa0278940 MtrunA17_Chr4g0013821 44.156 308 164 5 26 332 24 324 4.76e-85 261
Msa0278940 MtrunA17_Chr5g0421411 44.840 281 151 4 56 333 7 286 1.63e-83 255
Msa0278940 MtrunA17_Chr3g0106901 43.671 316 168 3 17 332 18 323 1.26e-82 254
Msa0278940 MtrunA17_Chr4g0024121 42.857 322 175 6 12 332 13 326 1.19e-81 251
Msa0278940 MtrunA17_Chr2g0322861 42.814 334 182 7 3 332 58 386 4.27e-81 252
Msa0278940 MtrunA17_Chr1g0213061 42.679 321 172 6 14 332 11 321 1.99e-80 248
Msa0278940 MtrunA17_Chr4g0063671 42.368 321 172 7 17 332 8 320 8.02e-79 244
Msa0278940 MtrunA17_Chr2g0279041 44.884 303 155 6 34 332 31 325 2.24e-78 243
Msa0278940 MtrunA17_Chr7g0268501 42.056 321 179 5 12 332 7 320 3.97e-78 242
Msa0278940 MtrunA17_Chr7g0268521 42.056 321 179 5 12 332 7 320 3.97e-78 242
Msa0278940 MtrunA17_Chr4g0076211 43.709 302 156 8 35 334 46 335 8.47e-77 239
Msa0278940 MtrunA17_Chr3g0128061 39.634 328 191 4 7 333 6 327 3.12e-76 238
Msa0278940 MtrunA17_Chr1g0204011 42.857 308 167 6 26 332 23 322 1.09e-75 236
Msa0278940 MtrunA17_Chr8g0371381 42.122 311 165 9 25 332 21 319 2.61e-75 235
Msa0278940 MtrunA17_Chr2g0296621 41.860 301 162 6 33 332 53 341 9.07e-73 229
Msa0278940 MtrunA17_Chr5g0401431 40.426 329 186 6 7 331 6 328 1.07e-72 228
Msa0278940 MtrunA17_Chr7g0224371 40.532 301 164 5 34 332 35 322 2.30e-72 228
Msa0278940 MtrunA17_Chr5g0405991 40.777 309 172 8 25 332 18 316 7.04e-72 226
Msa0278940 MtrunA17_Chr6g0467161 39.595 346 175 9 9 333 5 337 1.50e-71 226
Msa0278940 MtrunA17_Chr1g0194151 38.554 332 198 4 5 332 4 333 2.94e-71 225
Msa0278940 MtrunA17_Chr6g0477071 37.651 332 188 9 6 332 25 342 4.22e-71 225
Msa0278940 MtrunA17_Chr1g0157051 40.594 303 172 5 30 332 24 318 1.63e-70 223
Msa0278940 MtrunA17_Chr1g0148021 41.042 307 174 4 29 332 26 328 2.27e-70 223
Msa0278940 MtrunA17_Chr4g0075241 38.855 332 194 5 5 332 1 327 7.84e-70 221
Msa0278940 MtrunA17_Chr4g0053871 43.226 310 163 6 23 328 20 320 8.47e-70 221
Msa0278940 MtrunA17_Chr7g0254201 39.088 307 173 6 28 332 18 312 1.57e-69 220
Msa0278940 MtrunA17_Chr7g0225221 42.357 314 162 8 25 332 20 320 3.58e-69 219
Msa0278940 MtrunA17_Chr1g0194271 37.427 342 201 5 4 334 3 342 6.16e-69 219
Msa0278940 MtrunA17_Chr1g0188431 38.944 303 171 5 30 332 39 327 1.57e-68 218
Msa0278940 MtrunA17_Chr4g0046131 39.672 305 178 4 29 329 41 343 3.28e-68 218
Msa0278940 MtrunA17_Chr1g0164891 38.816 304 177 5 34 332 93 392 2.89e-67 216
Msa0278940 MtrunA17_Chr6g0467121 42.715 302 154 9 34 332 78 363 3.11e-67 216
Msa0278940 MtrunA17_Chr6g0467251 41.584 303 159 7 30 328 36 324 4.03e-67 215
Msa0278940 MtrunA17_Chr4g0072091 43.421 304 161 6 29 328 23 319 7.01e-67 213
Msa0278940 MtrunA17_Chr2g0278671 40.705 312 172 8 26 332 20 323 8.88e-67 213
Msa0278940 MtrunA17_Chr1g0197411 35.988 339 205 5 1 334 1 332 9.22e-67 213
Msa0278940 MtrunA17_Chr5g0432401 39.506 324 145 5 12 332 11 286 1.31e-65 209
Msa0278940 MtrunA17_Chr8g0364291 36.957 322 195 4 16 334 10 326 2.20e-63 204
Msa0278940 MtrunA17_Chr2g0316791 36.441 354 181 8 15 329 55 403 6.07e-63 206
Msa0278940 MtrunA17_Chr2g0316481 36.467 351 183 8 15 328 55 402 1.73e-62 204
Msa0278940 MtrunA17_Chr7g0254231 37.908 306 173 7 30 333 22 312 2.11e-61 199
Msa0278940 MtrunA17_Chr6g0460711 38.462 312 178 7 23 332 15 314 1.20e-60 197
Msa0278940 MtrunA17_Chr2g0279061 44.487 263 134 6 74 332 12 266 1.57e-60 195
Msa0278940 MtrunA17_Chr2g0316831 35.897 351 185 8 15 328 91 438 2.29e-60 200
Msa0278940 MtrunA17_Chr2g0311251 37.910 335 169 8 30 331 11 339 4.86e-60 196
Msa0278940 MtrunA17_Chr2g0316191 35.493 355 184 8 15 329 55 404 5.57e-60 198
Msa0278940 MtrunA17_Chr5g0413051 35.577 312 191 8 27 332 70 377 4.01e-59 195
Msa0278940 MtrunA17_Chr2g0329641 33.981 309 193 4 29 333 35 336 9.49e-59 193
Msa0278940 MtrunA17_Chr2g0311241 34.264 394 177 10 16 331 40 429 4.43e-58 194
Msa0278940 MtrunA17_Chr6g0451571 33.866 313 193 5 26 332 30 334 1.66e-55 184
Msa0278940 MtrunA17_Chr3g0136751 37.143 315 189 4 22 334 17 324 3.69e-55 183
Msa0278940 MtrunA17_Chr1g0181431 34.202 307 192 4 28 332 25 323 2.75e-50 171
Msa0278940 MtrunA17_Chr4g0004591 33.025 324 156 4 27 331 74 355 3.36e-50 171
Msa0278940 MtrunA17_Chr1g0181481 34.416 308 192 4 27 332 24 323 5.04e-50 170
Msa0278940 MtrunA17_Chr1g0181511 33.766 308 194 4 27 332 24 323 5.61e-50 170
Msa0278940 MtrunA17_Chr4g0074851 33.663 303 191 4 33 333 35 329 1.78e-48 166
Msa0278940 MtrunA17_Chr3g0114461 46.073 191 94 4 142 332 11 192 6.36e-48 160
Msa0278940 MtrunA17_Chr2g0316811 36.782 261 135 6 15 250 29 284 1.27e-43 153
Msa0278940 MtrunA17_Chr3g0114491 54.545 110 50 0 29 138 17 126 1.23e-35 126
Msa0278940 MtrunA17_Chr2g0316141 34.035 285 135 8 76 328 11 274 1.93e-35 130
Msa0278940 MtrunA17_Chr2g0316181 34.035 285 135 8 76 328 11 274 1.93e-35 130
Msa0278940 MtrunA17_Chr3g0104101 37.762 143 85 4 194 333 9 150 2.75e-23 94.4
Msa0278940 MtrunA17_Chr5g0432321 43.200 125 62 3 151 275 17 132 3.04e-22 90.9
Msa0278940 MtrunA17_Chr1g0181501 31.771 192 121 4 143 332 6 189 1.28e-21 90.9
Msa0278940 MtrunA17_Chr1g0181491 40.741 108 62 2 27 134 9 114 1.08e-18 82.0
Msa0278940 MtrunA17_Chr2g0316771 30.000 180 91 4 183 331 10 185 4.32e-18 81.3
Msa0278940 MtrunA17_Chr7g0254181 35.833 120 74 1 77 196 6 122 2.56e-16 75.5
Msa0278940 MtrunA17_Chr6g0468731 52.055 73 31 2 69 141 22 90 2.62e-16 73.6
Msa0278940 MtrunA17_Chr5g0432361 42.529 87 49 1 245 331 23 108 1.22e-15 72.0
Msa0278940 MtrunA17_Chr4g0013811 51.389 72 35 0 142 213 7 78 1.46e-15 70.9
Msa0278940 MtrunA17_Chr7g0268491 46.053 76 38 2 257 332 25 97 6.89e-12 61.2
Msa0278940 MtrunA17_Chr1g0196191 47.761 67 34 1 68 134 23 88 5.92e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0278940 AT5G06730.1 57.975 326 136 1 15 340 18 342 3.19e-129 374
Msa0278940 AT2G38380.1 56.098 328 137 3 26 352 27 348 8.51e-127 368
Msa0278940 AT5G06720.1 58.491 318 131 1 15 332 17 333 9.22e-127 367
Msa0278940 AT2G38390.1 53.659 328 145 3 26 352 27 348 4.32e-120 350
Msa0278940 AT3G32980.1 54.859 319 141 3 26 342 27 344 5.13e-118 345
Msa0278940 AT3G49120.1 54.574 317 141 3 26 340 28 343 4.15e-117 343
Msa0278940 AT3G49110.1 54.574 317 141 3 26 340 29 344 1.68e-116 342
Msa0278940 AT4G08770.1 52.012 323 152 3 26 346 20 341 1.72e-116 341
Msa0278940 AT4G08780.1 51.084 323 155 3 26 346 20 341 6.19e-114 335
Msa0278940 AT5G66390.1 46.866 335 173 3 1 332 1 333 4.51e-102 304
Msa0278940 AT2G18150.1 49.502 301 150 2 32 332 38 336 2.52e-99 297
Msa0278940 AT3G50990.1 50.974 308 149 2 25 332 36 341 4.58e-99 297
Msa0278940 AT2G18140.1 49.502 301 150 2 32 332 37 335 5.96e-99 296
Msa0278940 AT4G36430.1 48.220 309 158 2 25 333 25 331 1.91e-98 295
Msa0278940 AT5G19890.1 52.597 308 135 6 28 332 28 327 3.08e-98 294
Msa0278940 AT1G44970.1 48.718 312 157 2 21 332 38 346 6.27e-98 294
Msa0278940 AT5G19880.1 49.206 315 154 5 22 332 17 329 1.34e-95 288
Msa0278940 AT1G14550.1 49.186 307 147 5 27 332 23 321 2.29e-95 286
Msa0278940 AT5G05340.1 49.020 306 146 3 28 332 28 324 1.46e-94 285
Msa0278940 AT1G49570.1 46.557 305 159 2 28 330 46 348 2.31e-92 280
Msa0278940 AT1G14540.1 46.914 324 154 5 9 332 10 315 7.10e-91 275
Msa0278940 AT1G68850.1 45.574 305 161 5 33 333 33 336 6.81e-90 273
Msa0278940 AT4G16270.1 45.724 304 159 5 30 332 50 348 6.30e-88 268
Msa0278940 AT1G71695.1 46.584 322 160 6 30 349 44 355 3.04e-87 267
Msa0278940 AT2G22420.1 42.813 327 174 4 6 332 6 319 2.13e-85 261
Msa0278940 AT2G35380.1 46.708 319 161 5 18 332 22 335 1.42e-84 259
Msa0278940 AT5G58390.1 45.307 309 158 4 26 332 17 316 2.31e-83 256
Msa0278940 AT5G58400.1 44.201 319 164 5 16 332 19 325 6.36e-81 250
Msa0278940 AT2G41480.1 43.827 324 165 8 15 332 16 328 1.41e-79 246
Msa0278940 AT3G21770.1 44.231 312 167 6 19 328 18 324 2.34e-78 243
Msa0278940 AT1G05260.1 43.548 310 164 8 28 333 24 326 1.06e-77 242
Msa0278940 AT4G11290.1 41.975 324 182 5 11 332 7 326 1.84e-76 238
Msa0278940 AT5G17820.1 40.557 323 178 7 10 332 5 313 6.20e-76 237
Msa0278940 AT5G64120.1 43.478 299 160 6 34 332 39 328 1.93e-75 236
Msa0278940 AT3G03670.1 39.571 326 192 4 7 332 1 321 1.94e-75 236
Msa0278940 AT5G17820.2 40.557 323 178 7 10 332 58 366 9.92e-75 235
Msa0278940 AT5G51890.1 40.065 307 178 4 26 332 22 322 4.11e-74 232
Msa0278940 AT2G18980.1 42.236 322 174 5 15 332 10 323 1.29e-73 231
Msa0278940 AT4G25980.1 40.061 327 180 7 11 332 11 326 1.65e-72 228
Msa0278940 AT5G64110.1 44.224 303 155 7 34 332 38 330 2.28e-72 228
Msa0278940 AT5G15180.1 38.855 332 195 5 1 332 6 329 2.93e-72 228
Msa0278940 AT4G30170.1 41.935 310 168 5 27 332 24 325 4.23e-72 227
Msa0278940 AT3G01190.1 39.198 324 188 6 9 332 7 321 5.30e-72 227
Msa0278940 AT5G67400.1 40.541 333 185 6 9 332 1 329 1.97e-71 226
Msa0278940 AT4G37530.1 41.479 311 174 5 26 332 23 329 3.89e-71 225
Msa0278940 AT5G14130.1 42.444 311 169 7 25 332 27 330 3.46e-70 223
Msa0278940 AT5G14130.2 42.444 311 169 7 25 332 68 371 9.03e-70 223
Msa0278940 AT1G05240.1 38.835 309 174 5 30 332 26 325 2.87e-69 220
Msa0278940 AT1G05250.1 38.835 309 174 5 30 332 26 325 2.87e-69 220
Msa0278940 AT5G39580.1 40.606 330 179 8 4 332 6 319 1.31e-68 218
Msa0278940 AT5G42180.1 37.855 317 188 6 15 331 9 316 4.69e-67 214
Msa0278940 AT3G49960.1 39.024 328 189 6 9 332 9 329 1.49e-66 213
Msa0278940 AT4G33420.1 36.556 331 195 7 2 332 10 325 1.79e-65 210
Msa0278940 AT4G33420.2 36.556 331 195 7 2 332 57 372 9.89e-65 210
Msa0278940 AT4G26010.1 39.423 312 166 7 25 332 17 309 1.14e-64 207
Msa0278940 AT4G33870.1 34.615 338 182 5 27 329 65 398 1.52e-64 210
Msa0278940 AT4G26010.2 39.423 312 166 7 25 332 45 337 2.25e-64 208
Msa0278940 AT4G37520.1 38.835 309 181 5 28 332 25 329 2.46e-64 207
Msa0278940 AT5G64100.1 39.867 301 171 6 33 332 40 331 3.24e-63 204
Msa0278940 AT4G37520.2 38.511 309 179 6 28 332 25 326 3.34e-63 204
Msa0278940 AT1G77100.1 38.782 312 174 7 26 332 20 319 1.89e-62 202
Msa0278940 AT2G35380.2 46.774 248 127 4 89 332 1 247 4.57e-62 199
Msa0278940 AT2G34060.1 37.662 308 184 5 27 329 39 343 5.86e-62 202
Msa0278940 AT3G28200.1 36.102 313 183 5 25 332 16 316 3.95e-61 199
Msa0278940 AT5G40150.1 36.306 314 184 4 24 332 26 328 4.66e-61 199
Msa0278940 AT2G39040.1 39.744 312 178 7 27 332 43 350 5.21e-61 199
Msa0278940 AT1G30870.1 37.171 304 177 6 33 333 54 346 3.00e-60 197
Msa0278940 AT4G17690.1 36.218 312 183 4 30 336 26 326 4.01e-60 196
Msa0278940 AT4G37530.2 42.308 260 146 3 26 282 23 281 1.23e-59 194
Msa0278940 AT5G24070.1 36.688 308 177 7 33 332 38 335 1.39e-59 196
Msa0278940 AT4G31760.1 35.329 334 206 5 1 332 1 326 1.56e-59 195
Msa0278940 AT5G47000.1 36.013 311 190 4 28 336 31 334 7.56e-58 191
Msa0278940 AT2G43480.1 34.111 343 201 8 7 332 1 335 8.46e-58 191
Msa0278940 AT5G22410.1 36.825 315 180 9 22 329 20 322 4.67e-57 189
Msa0278940 AT2G24800.1 36.808 307 186 3 28 332 29 329 2.34e-56 187
Msa0278940 AT1G34510.1 35.621 306 180 6 28 332 20 309 3.85e-56 186
Msa0278940 AT1G24110.1 35.385 325 200 7 11 332 5 322 1.37e-55 185
Msa0278940 AT3G17070.1 34.911 338 201 7 3 332 13 339 2.61e-53 179
Msa0278940 AT4G21960.1 34.426 305 186 5 33 333 34 328 5.68e-51 173
Msa0278940 AT2G37130.1 33.981 309 193 5 27 332 27 327 1.83e-48 166
Msa0278940 AT2G37130.2 33.993 303 189 5 33 332 2 296 3.67e-47 162
Msa0278940 AT4G25980.2 44.767 172 91 3 26 197 67 234 1.41e-43 152
Msa0278940 AT5G39580.2 38.559 236 123 6 4 232 6 226 6.73e-39 138
Msa0278940 AT3G17070.2 34.572 269 158 7 72 332 18 276 2.34e-37 135
Msa0278940 AT2G24800.2 40.237 169 95 3 28 195 29 192 5.41e-32 120

Find 75 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACGGATCTTGTTGCACTTTC+AGG 0.138143 2_3:-12119655 Msa0278940:intron
CCTCTTATTGAGTTGTTATT+TGG 0.142819 2_3:+12120943 None:intergenic
TAAGGCCTCCATGATTAAAA+TGG 0.159041 2_3:-12119091 Msa0278940:CDS
CCCTAGAAAACACTCTTTAT+TGG 0.184227 2_3:+12118904 None:intergenic
TGCTAATATTTCATCTGTTC+TGG 0.254326 2_3:-12120836 Msa0278940:intron
ACCATCTTCTGATGAATCTT+TGG 0.276196 2_3:+12118981 None:intergenic
ATGATTAAAATGGGTAATAT+TGG 0.286583 2_3:-12119081 Msa0278940:CDS
CAATTCCTGTAATTAGATTA+AGG 0.287019 2_3:-12118710 Msa0278940:three_prime_UTR
AGCTACCAACCTCACCAATT+TGG 0.295237 2_3:-12119277 Msa0278940:CDS
AAACTATCTCTTCTTCCTAA+TGG 0.298706 2_3:+12119775 None:intergenic
ATAATCGATCAACGAATAAA+AGG 0.305907 2_3:+12119391 None:intergenic
GTAGCTTGATTGCCAATATC+AGG 0.313736 2_3:+12119294 None:intergenic
CACAGGCTCTTGGTCCTGAT+TGG 0.326641 2_3:-12119804 Msa0278940:intron
CCAAATAACAACTCAATAAG+AGG 0.334119 2_3:-12120943 Msa0278940:CDS
AATATCCTTAATCTAATTAC+AGG 0.335691 2_3:+12118705 None:intergenic
CCTAGAAAACACTCTTTATT+GGG 0.339570 2_3:+12118905 None:intergenic
GTATGCTTGCCAGTTTCATT+AGG 0.349331 2_3:-12121322 Msa0278940:CDS
ACTTGATCCTAACTTCTATA+AGG 0.356786 2_3:-12121411 Msa0278940:CDS
TTAATTCAGTAAGATTAAAT+CGG 0.360125 2_3:+12119710 None:intergenic
CAAGCAATATGCCCTGATAT+TGG 0.367408 2_3:-12119306 Msa0278940:CDS
GGTAATATTGGAGTGTTAAC+TGG 0.369290 2_3:-12119069 Msa0278940:CDS
AAAACCTCATTTCTTAATCA+AGG 0.380354 2_3:-12119688 Msa0278940:CDS
CTTGCTAATTCAAACCTTCC+TGG 0.385977 2_3:-12119736 Msa0278940:CDS
TGAACAATGGAAGTGACATT+TGG 0.393841 2_3:+12121380 None:intergenic
TCGAATCTCCAAGTTGGAAA+TGG 0.398140 2_3:-12119216 Msa0278940:CDS
TAACAACTCAATAAGAGGTT+TGG 0.401893 2_3:-12120938 Msa0278940:CDS
AAAGTGAAGCCTAATGAAAC+TGG 0.404928 2_3:+12121313 None:intergenic
ACAGGCTCTTGGTCCTGATT+GGG 0.409769 2_3:-12119803 Msa0278940:intron
TGCTGTGTAGTGGTTGTGCT+TGG 0.416566 2_3:-12121461 Msa0278940:CDS
TAGTTTGAGTCGAATGCATC+GGG 0.422778 2_3:+12119243 None:intergenic
CCTGATTGGGAAGTTCCATT+AGG 0.430222 2_3:-12119790 Msa0278940:CDS
TAATTCAGTAAGATTAAATC+GGG 0.430892 2_3:+12119711 None:intergenic
TAAGACAAGTTGCATAAGAA+AGG 0.435940 2_3:-12118934 Msa0278940:three_prime_UTR
AAGGCCTCCATGATTAAAAT+GGG 0.443699 2_3:-12119090 Msa0278940:CDS
CAAGTGTCCTTATAGAAGTT+AGG 0.444545 2_3:+12121404 None:intergenic
GAAACAAACCATTTCCAACT+TGG 0.447818 2_3:+12119208 None:intergenic
CCTAATGGAACTTCCCAATC+AGG 0.449764 2_3:+12119790 None:intergenic
AGTAAGGTTGTGTTAAGAGT+TGG 0.451448 2_3:+12119339 None:intergenic
TGTGTAGTGGTTGTGCTTGG+AGG 0.472368 2_3:-12121458 Msa0278940:CDS
GTGTAGTGGTTGTGCTTGGA+GGG 0.502187 2_3:-12121457 Msa0278940:CDS
GTTGTGTTAAGAGTTGGATC+TGG 0.502833 2_3:+12119345 None:intergenic
TGCTTGCAATGATTGTAGTA+AGG 0.508624 2_3:+12119323 None:intergenic
AAAGCTATTGACAATGTCAA+TGG 0.511312 2_3:+12119146 None:intergenic
TGTGCAGATATTCTTGCACT+TGG 0.512900 2_3:-12120859 Msa0278940:CDS
TGACATAATTCACAGGCTCT+TGG 0.513879 2_3:-12119814 Msa0278940:intron
TACGTCCAAATTGGTGAGGT+TGG 0.516617 2_3:+12119272 None:intergenic
CTTTGGTGACTTTAGTAGCA+AGG 0.532818 2_3:+12118998 None:intergenic
AGCAGCTTTGTGCTGTGTAG+TGG 0.540972 2_3:-12121471 Msa0278940:CDS
AAGTTGTGCATTTGAAGAGA+AGG 0.544272 2_3:+12121430 None:intergenic
AGTTGTGCATTTGAAGAGAA+GGG 0.549134 2_3:+12121431 None:intergenic
ACCAAAGATTCATCAGAAGA+TGG 0.551368 2_3:-12118982 Msa0278940:CDS
GGTGCTCATACGATTGGAAG+AGG 0.553044 2_3:-12119420 Msa0278940:CDS
TACTACTCGAATCTCCAAGT+TGG 0.554326 2_3:-12119222 Msa0278940:CDS
ACATACATGTGCTATTGTGC+TGG 0.557776 2_3:-12118880 Msa0278940:three_prime_UTR
GAGACCTTGATTAAGAAATG+AGG 0.564227 2_3:+12119684 None:intergenic
GTAAGATTAAATCGGGGACC+AGG 0.567908 2_3:+12119718 None:intergenic
TCTACGATCGTGAGTGAGCA+AGG 0.570553 2_3:-12120973 Msa0278940:CDS
ATGAAACTGGCAAGCATACG+AGG 0.572572 2_3:+12121326 None:intergenic
GTAGTTTGAGTCGAATGCAT+CGG 0.574576 2_3:+12119242 None:intergenic
TGCTAAGACACTTTGAACAA+TGG 0.585377 2_3:+12121367 None:intergenic
TGCTTACGTCCAAATTGGTG+AGG 0.594113 2_3:+12119268 None:intergenic
TAGCTTGATTGCCAATATCA+GGG 0.597537 2_3:+12119295 None:intergenic
TCTGCACAAGACACAACACT+AGG 0.601116 2_3:+12120874 None:intergenic
GGAGTGTTAACTGGTACTCA+AGG 0.602686 2_3:-12119060 Msa0278940:CDS
GATTAAATCGGGGACCAGGA+AGG 0.614479 2_3:+12119722 None:intergenic
TTATACAATTTCAGCAACAC+AGG 0.626417 2_3:-12119372 Msa0278940:CDS
ATGACATATAATTATCACAA+TGG 0.629988 2_3:+12118782 None:intergenic
TAATCAAGGTCTCAACACTA+CGG 0.635610 2_3:-12119674 Msa0278940:CDS
CTGCACAAGACACAACACTA+GGG 0.647712 2_3:+12120875 None:intergenic
TGAAACTGGCAAGCATACGA+GGG 0.671256 2_3:+12121327 None:intergenic
GTTTGAGTCGAATGCATCGG+GGG 0.672996 2_3:+12119245 None:intergenic
GAATCAAATCAAAGCCGCAG+TGG 0.686967 2_3:-12120908 Msa0278940:CDS
AATTCAGTAAGATTAAATCG+GGG 0.694375 2_3:+12119712 None:intergenic
AGTTTGAGTCGAATGCATCG+GGG 0.731684 2_3:+12119244 None:intergenic
AGGGCAAGCAAGTTCCACTG+CGG 0.840601 2_3:+12120894 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAAATATATTATTTAA+AGG - chr2_3:12119950-12119969 Msa0278940:intron 0.0%
!! AATAAAACAAAAATAACTTA+AGG + chr2_3:12120026-12120045 None:intergenic 10.0%
!! TTAAAAATAGTATATTTACA+AGG + chr2_3:12120055-12120074 None:intergenic 10.0%
!!! AATATACTATTTTTAACTTT+TGG - chr2_3:12120059-12120078 Msa0278940:intron 10.0%
!!! TAATATGAATAAATTTTGTA+GGG + chr2_3:12120107-12120126 None:intergenic 10.0%
!!! ATAATATGAATAAATTTTGT+AGG + chr2_3:12120108-12120127 None:intergenic 10.0%
!! GAAAAAAATAGTTTATTAAA+AGG + chr2_3:12120236-12120255 None:intergenic 10.0%
!!! ATTTTAAATTTTTTATAACC+TGG + chr2_3:12120676-12120695 None:intergenic 10.0%
!! TAAAATTGTGTATATAAAAA+AGG - chr2_3:12121429-12121448 Msa0278940:CDS 10.0%
!! TATAAAAGATCTAATTAACT+TGG + chr2_3:12119076-12119095 None:intergenic 15.0%
!!! ATTGAATTTTGTAAGTAAAA+AGG + chr2_3:12119504-12119523 None:intergenic 15.0%
!!! TTTTAAAATTAACAGAAACA+TGG + chr2_3:12119642-12119661 None:intergenic 15.0%
!! GGAATAAAAACAAAATAATA+AGG + chr2_3:12120086-12120105 None:intergenic 15.0%
!!! AGGAATTTTTTTTTTTTTGA+AGG - chr2_3:12120158-12120177 Msa0278940:intron 15.0%
!! TATTAAAAGGAATTAAACAA+AGG + chr2_3:12120223-12120242 None:intergenic 15.0%
!! TTAATTCAGTAAGATTAAAT+CGG + chr2_3:12120476-12120495 None:intergenic 15.0%
!! TTGATTTCTATGTTTATGAA+AGG - chr2_3:12119155-12119174 Msa0278940:CDS 20.0%
!! TGATTTCTATGTTTATGAAA+GGG - chr2_3:12119156-12119175 Msa0278940:CDS 20.0%
!! AGGAAATATGAATATATAGA+GGG + chr2_3:12119384-12119403 None:intergenic 20.0%
!! TAGGAAATATGAATATATAG+AGG + chr2_3:12119385-12119404 None:intergenic 20.0%
!! ACAGTTATTATTGAAACTTA+TGG + chr2_3:12119429-12119448 None:intergenic 20.0%
!! TTGATCAAATAATCAAGAAT+TGG - chr2_3:12119872-12119891 Msa0278940:intron 20.0%
!! TGATCAAATAATCAAGAATT+GGG - chr2_3:12119873-12119892 Msa0278940:intron 20.0%
!!! TGATTGATCTTTTTCTATTT+AGG + chr2_3:12119931-12119950 None:intergenic 20.0%
!! TAAAGGTTTAAATATCCAAA+TGG - chr2_3:12119967-12119986 Msa0278940:intron 20.0%
!!! TTTTTTTGAAGGAATCTAAT+AGG - chr2_3:12120169-12120188 Msa0278940:intron 20.0%
!!! TAAACAAAGGCATTTTTTTA+AGG + chr2_3:12120210-12120229 None:intergenic 20.0%
!! TAATTCAGTAAGATTAAATC+GGG + chr2_3:12120475-12120494 None:intergenic 20.0%
!!! GTGTACATATATAGTTTTTA+AGG + chr2_3:12120569-12120588 None:intergenic 20.0%
!! TATATATGTACACAAAACAT+CGG - chr2_3:12120576-12120595 Msa0278940:intron 20.0%
!!! TATATGCTTTGATCATTTTT+AGG - chr2_3:12120742-12120761 Msa0278940:intron 20.0%
!!! AATATTACCCATTTTAATCA+TGG + chr2_3:12121103-12121122 None:intergenic 20.0%
!! ATGATTAAAATGGGTAATAT+TGG - chr2_3:12121102-12121121 Msa0278940:intron 20.0%
!! ATGACATATAATTATCACAA+TGG + chr2_3:12121404-12121423 None:intergenic 20.0%
!! AATATCCTTAATCTAATTAC+AGG + chr2_3:12121481-12121500 None:intergenic 20.0%
!! AAAACAAGCTTTAACATATG+TGG - chr2_3:12119454-12119473 Msa0278940:intron 25.0%
! CTTGATTATTTGATCAAAGA+TGG + chr2_3:12119869-12119888 None:intergenic 25.0%
! AATTCAGTAAGATTAAATCG+GGG + chr2_3:12120474-12120493 None:intergenic 25.0%
! AAAACCTCATTTCTTAATCA+AGG - chr2_3:12120495-12120514 Msa0278940:intron 25.0%
!!! ATTTTTAAGGACACACATAT+AGG + chr2_3:12120612-12120631 None:intergenic 25.0%
!! AAATGTCCACATGATTTTTA+AGG + chr2_3:12120625-12120644 None:intergenic 25.0%
! ATAATCGATCAACGAATAAA+AGG + chr2_3:12120795-12120814 None:intergenic 25.0%
!!! TCTTTTCTTTGAAGCTTTTA+AGG - chr2_3:12121074-12121093 Msa0278940:intron 25.0%
!!! GTACTTTATTTTGTAATCTG+TGG - chr2_3:12121341-12121360 Msa0278940:CDS 25.0%
! CAATTCCTGTAATTAGATTA+AGG - chr2_3:12121473-12121492 Msa0278940:CDS 25.0%
ACTTGATCCTAACTTCTATA+AGG - chr2_3:12118772-12118791 Msa0278940:three_prime_UTR 30.0%
! ACCAACATCTAAGTAAGTTT+TGG - chr2_3:12119113-12119132 Msa0278940:CDS 30.0%
TCCAAAACTTACTTAGATGT+TGG + chr2_3:12119117-12119136 None:intergenic 30.0%
! CCTCTTATTGAGTTGTTATT+TGG + chr2_3:12119243-12119262 None:intergenic 30.0%
CCAAATAACAACTCAATAAG+AGG - chr2_3:12119240-12119259 Msa0278940:CDS 30.0%
TAACAACTCAATAAGAGGTT+TGG - chr2_3:12119245-12119264 Msa0278940:CDS 30.0%
TGCTAATATTTCATCTGTTC+TGG - chr2_3:12119347-12119366 Msa0278940:CDS 30.0%
ATATGAATATATAGAGGGTG+TGG + chr2_3:12119379-12119398 None:intergenic 30.0%
! TGATTAATAGTCTTACCGTT+AGG - chr2_3:12119537-12119556 Msa0278940:intron 30.0%
TAAAGAAAGAACAATGAGCA+TGG + chr2_3:12119567-12119586 None:intergenic 30.0%
! TTTTTCTCTCCTAGAATAGT+GGG + chr2_3:12119782-12119801 None:intergenic 30.0%
!!! TTTTTTCTCTCCTAGAATAG+TGG + chr2_3:12119783-12119802 None:intergenic 30.0%
ATTATTTGATCAAAGATGGC+CGG + chr2_3:12119865-12119884 None:intergenic 30.0%
!! GAAACTTTCTAGCTACTTAT+CGG + chr2_3:12119906-12119925 None:intergenic 30.0%
TCAAAATCATTGACATTTGC+AGG + chr2_3:12119995-12120014 None:intergenic 30.0%
CTCTCAAGATAAAGTCTAAT+AGG - chr2_3:12120138-12120157 Msa0278940:intron 30.0%
AAACTATCTCTTCTTCCTAA+TGG + chr2_3:12120411-12120430 None:intergenic 30.0%
TTATACAATTTCAGCAACAC+AGG - chr2_3:12120811-12120830 Msa0278940:intron 30.0%
AAAGCTATTGACAATGTCAA+TGG + chr2_3:12121040-12121059 None:intergenic 30.0%
!! ATTACCCATTTTAATCATGG+AGG + chr2_3:12121100-12121119 None:intergenic 30.0%
TAAGACAAGTTGCATAAGAA+AGG - chr2_3:12121249-12121268 Msa0278940:intron 30.0%
CCTAGAAAACACTCTTTATT+GGG + chr2_3:12121281-12121300 None:intergenic 30.0%
!!! CCAATAAAGAGTGTTTTCTA+GGG - chr2_3:12121279-12121298 Msa0278940:intron 30.0%
AGTTGTGCATTTGAAGAGAA+GGG + chr2_3:12118755-12118774 None:intergenic 35.0%
AAGTTGTGCATTTGAAGAGA+AGG + chr2_3:12118756-12118775 None:intergenic 35.0%
CAAGTGTCCTTATAGAAGTT+AGG + chr2_3:12118782-12118801 None:intergenic 35.0%
TGAACAATGGAAGTGACATT+TGG + chr2_3:12118806-12118825 None:intergenic 35.0%
TGCTAAGACACTTTGAACAA+TGG + chr2_3:12118819-12118838 None:intergenic 35.0%
AAAGTGAAGCCTAATGAAAC+TGG + chr2_3:12118873-12118892 None:intergenic 35.0%
TGATTCTATCAAACTCGTTG+TGG + chr2_3:12118961-12118980 None:intergenic 35.0%
TCGTCTTAGGAATGAGATAT+AGG + chr2_3:12119404-12119423 None:intergenic 35.0%
CTCATGTGGAAAGAACAAAA+AGG + chr2_3:12119480-12119499 None:intergenic 35.0%
GTAAGTAAAAAGGTCTCATG+TGG + chr2_3:12119494-12119513 None:intergenic 35.0%
! TACTTGTGTCTCAATTTTCC+TGG - chr2_3:12120346-12120365 Msa0278940:intron 35.0%
GAGACCTTGATTAAGAAATG+AGG + chr2_3:12120502-12120521 None:intergenic 35.0%
TAATCAAGGTCTCAACACTA+CGG - chr2_3:12120509-12120528 Msa0278940:intron 35.0%
GTGTGTCCTTAAAAATCATG+TGG - chr2_3:12120616-12120635 Msa0278940:intron 35.0%
AGTTTAAATCTCCTCGGAAA+CGG + chr2_3:12120653-12120672 None:intergenic 35.0%
GAGCTGATAACTTATTATGC+AGG - chr2_3:12120700-12120719 Msa0278940:intron 35.0%
!!! TTTTTAGGTGCTCATACGAT+TGG - chr2_3:12120757-12120776 Msa0278940:intron 35.0%
AGTAAGGTTGTGTTAAGAGT+TGG + chr2_3:12120847-12120866 None:intergenic 35.0%
TGCTTGCAATGATTGTAGTA+AGG + chr2_3:12120863-12120882 None:intergenic 35.0%
TAGCTTGATTGCCAATATCA+GGG + chr2_3:12120891-12120910 None:intergenic 35.0%
GAAACAAACCATTTCCAACT+TGG + chr2_3:12120978-12120997 None:intergenic 35.0%
TAAGGCCTCCATGATTAAAA+TGG - chr2_3:12121092-12121111 Msa0278940:intron 35.0%
AAGGCCTCCATGATTAAAAT+GGG - chr2_3:12121093-12121112 Msa0278940:intron 35.0%
! GGTAATATTGGAGTGTTAAC+TGG - chr2_3:12121114-12121133 Msa0278940:intron 35.0%
ACCAAAGATTCATCAGAAGA+TGG - chr2_3:12121201-12121220 Msa0278940:intron 35.0%
ACCATCTTCTGATGAATCTT+TGG + chr2_3:12121205-12121224 None:intergenic 35.0%
!!! CCCAATAAAGAGTGTTTTCT+AGG - chr2_3:12121278-12121297 Msa0278940:intron 35.0%
CCCTAGAAAACACTCTTTAT+TGG + chr2_3:12121282-12121301 None:intergenic 35.0%
GTATGCTTGCCAGTTTCATT+AGG - chr2_3:12118861-12118880 Msa0278940:three_prime_UTR 40.0%
TGTGCAGATATTCTTGCACT+TGG - chr2_3:12119324-12119343 Msa0278940:CDS 40.0%
GAAACTTATGGAGTCGTCTT+AGG + chr2_3:12119417-12119436 None:intergenic 40.0%
AATGAGCATGGTTGACCTAA+CGG + chr2_3:12119555-12119574 None:intergenic 40.0%
AGCAATGAATGTCTCTTAGC+CGG - chr2_3:12119843-12119862 Msa0278940:intron 40.0%
!! CTTTCTAGCTACTTATCGGA+TGG + chr2_3:12119902-12119921 None:intergenic 40.0%
TTCCTGGTGACATAATTCAC+AGG - chr2_3:12120362-12120381 Msa0278940:intron 40.0%
TGACATAATTCACAGGCTCT+TGG - chr2_3:12120369-12120388 Msa0278940:intron 40.0%
CTTGCTAATTCAAACCTTCC+TGG - chr2_3:12120447-12120466 Msa0278940:intron 40.0%
! ACATTTTACAACCGTTTCCG+AGG - chr2_3:12120639-12120658 Msa0278940:intron 40.0%
ACCTGGAGTTTAAATCTCCT+CGG + chr2_3:12120659-12120678 None:intergenic 40.0%
GTTGTGTTAAGAGTTGGATC+TGG + chr2_3:12120841-12120860 None:intergenic 40.0%
CAAGCAATATGCCCTGATAT+TGG - chr2_3:12120877-12120896 Msa0278940:CDS 40.0%
GTAGCTTGATTGCCAATATC+AGG + chr2_3:12120892-12120911 None:intergenic 40.0%
TAGTTTGAGTCGAATGCATC+GGG + chr2_3:12120943-12120962 None:intergenic 40.0%
GTAGTTTGAGTCGAATGCAT+CGG + chr2_3:12120944-12120963 None:intergenic 40.0%
TACTACTCGAATCTCCAAGT+TGG - chr2_3:12120961-12120980 Msa0278940:CDS 40.0%
! TCGAATCTCCAAGTTGGAAA+TGG - chr2_3:12120967-12120986 Msa0278940:CDS 40.0%
!!! CAAGAGCTTTTTTCGACAAC+TGG - chr2_3:12121006-12121025 Msa0278940:CDS 40.0%
! CTTTGGTGACTTTAGTAGCA+AGG + chr2_3:12121188-12121207 None:intergenic 40.0%
! ACATACATGTGCTATTGTGC+TGG - chr2_3:12121303-12121322 Msa0278940:CDS 40.0%
TGAAACTGGCAAGCATACGA+GGG + chr2_3:12118859-12118878 None:intergenic 45.0%
ATGAAACTGGCAAGCATACG+AGG + chr2_3:12118860-12118879 None:intergenic 45.0%
GAATCAAATCAAAGCCGCAG+TGG - chr2_3:12119275-12119294 Msa0278940:CDS 45.0%
CTGCACAAGACACAACACTA+GGG + chr2_3:12119311-12119330 None:intergenic 45.0%
TCTGCACAAGACACAACACT+AGG + chr2_3:12119312-12119331 None:intergenic 45.0%
TGACATTTGCAGGCACCATT+TGG + chr2_3:12119985-12120004 None:intergenic 45.0%
AGCCTGTGAATTATGTCACC+AGG + chr2_3:12120367-12120386 None:intergenic 45.0%
CCTAATGGAACTTCCCAATC+AGG + chr2_3:12120396-12120415 None:intergenic 45.0%
CCTGATTGGGAAGTTCCATT+AGG - chr2_3:12120393-12120412 Msa0278940:intron 45.0%
GTAAGATTAAATCGGGGACC+AGG + chr2_3:12120468-12120487 None:intergenic 45.0%
ACGGATCTTGTTGCACTTTC+AGG - chr2_3:12120528-12120547 Msa0278940:intron 45.0%
TCCGAGGAGATTTAAACTCC+AGG - chr2_3:12120655-12120674 Msa0278940:intron 45.0%
AGCTACCAACCTCACCAATT+TGG - chr2_3:12120906-12120925 Msa0278940:CDS 45.0%
TACGTCCAAATTGGTGAGGT+TGG + chr2_3:12120914-12120933 None:intergenic 45.0%
TGCTTACGTCCAAATTGGTG+AGG + chr2_3:12120918-12120937 None:intergenic 45.0%
AGTTTGAGTCGAATGCATCG+GGG + chr2_3:12120942-12120961 None:intergenic 45.0%
! GGAGTGTTAACTGGTACTCA+AGG - chr2_3:12121123-12121142 Msa0278940:intron 45.0%
! AGCAGCTTTGTGCTGTGTAG+TGG - chr2_3:12118712-12118731 Msa0278940:three_prime_UTR 50.0%
TGCTGTGTAGTGGTTGTGCT+TGG - chr2_3:12118722-12118741 Msa0278940:three_prime_UTR 50.0%
TGTGTAGTGGTTGTGCTTGG+AGG - chr2_3:12118725-12118744 Msa0278940:three_prime_UTR 50.0%
GTGTAGTGGTTGTGCTTGGA+GGG - chr2_3:12118726-12118745 Msa0278940:three_prime_UTR 50.0%
TCTACGATCGTGAGTGAGCA+AGG - chr2_3:12119210-12119229 Msa0278940:CDS 50.0%
TCGAACCTGCCCACTATTCT+AGG - chr2_3:12119770-12119789 Msa0278940:CDS 50.0%
!! TCTCTCCTAGAATAGTGGGC+AGG + chr2_3:12119778-12119797 None:intergenic 50.0%
ACAGGCTCTTGGTCCTGATT+GGG - chr2_3:12120380-12120399 Msa0278940:intron 50.0%
GATTAAATCGGGGACCAGGA+AGG + chr2_3:12120464-12120483 None:intergenic 50.0%
GGTGCTCATACGATTGGAAG+AGG - chr2_3:12120763-12120782 Msa0278940:intron 50.0%
GTTTGAGTCGAATGCATCGG+GGG + chr2_3:12120941-12120960 None:intergenic 50.0%
AGGGCAAGCAAGTTCCACTG+CGG + chr2_3:12119292-12119311 None:intergenic 55.0%
CACAGGCTCTTGGTCCTGAT+TGG - chr2_3:12120379-12120398 Msa0278940:intron 55.0%
!! GGGGGTGCTTACGTCCAAAT+TGG + chr2_3:12120923-12120942 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 12118686 12121519 12118686 ID=Msa0278940;Name=Msa0278940
chr2_3 mRNA 12118686 12121519 12118686 ID=Msa0278940-mRNA-1;Parent=Msa0278940;Name=Msa0278940-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0|1|1|1|0.75|0.6|5|254|353
chr2_3 exon 12118686 12118824 12118686 ID=Msa0278940-mRNA-1:exon:5473;Parent=Msa0278940-mRNA-1
chr2_3 exon 12118848 12119441 12118848 ID=Msa0278940-mRNA-1:exon:5472;Parent=Msa0278940-mRNA-1
chr2_3 exon 12119656 12119821 12119656 ID=Msa0278940-mRNA-1:exon:5471;Parent=Msa0278940-mRNA-1
chr2_3 exon 12120837 12121028 12120837 ID=Msa0278940-mRNA-1:exon:5470;Parent=Msa0278940-mRNA-1
chr2_3 exon 12121295 12121519 12121295 ID=Msa0278940-mRNA-1:exon:5469;Parent=Msa0278940-mRNA-1
chr2_3 CDS 12121295 12121519 12121295 ID=Msa0278940-mRNA-1:cds;Parent=Msa0278940-mRNA-1
chr2_3 CDS 12120837 12121028 12120837 ID=Msa0278940-mRNA-1:cds;Parent=Msa0278940-mRNA-1
chr2_3 CDS 12119656 12119821 12119656 ID=Msa0278940-mRNA-1:cds;Parent=Msa0278940-mRNA-1
chr2_3 CDS 12118963 12119441 12118963 ID=Msa0278940-mRNA-1:cds;Parent=Msa0278940-mRNA-1
chr2_3 three_prime_UTR 12118848 12118962 12118848 ID=Msa0278940-mRNA-1:three_prime_utr;Parent=Msa0278940-mRNA-1
chr2_3 three_prime_UTR 12118686 12118824 12118686 ID=Msa0278940-mRNA-1:three_prime_utr;Parent=Msa0278940-mRNA-1
Gene Sequence

>Msa0278940

ATGAACTCTTCTTTTCATCTCACATTAGCAGCTTTGTGCTGTGTAGTGGTTGTGCTTGGAGGGTTTCCCTTCTCTTCAAATGCACAACTTGATCCTAACTTCTATAAGGACACTTGTCCAAATGTCACTTCCATTGTTCAAAGTGTCTTAGCAAATGTTTCTCAGACAGACCCTCGTATGCTTGCCAGTTTCATTAGGCTTCACTTTCATGATTGTTTTGTTCAAGGTTGTGATGCATCACTCTTGTTGAATGACTCTTCTACGATCGTGAGTGAGCAAGGAGCTTTGCCAAATAACAACTCAATAAGAGGTTTGGATGTTGTGAATCAAATCAAAGCCGCAGTGGAACTTGCTTGCCCTAGTGTTGTGTCTTGTGCAGATATTCTTGCACTTGGTGCTAATATTTCATCTGTTCTGGCTCTTGGTCCTGATTGGGAAGTTCCATTAGGAAGAAGAGATAGTTTGAATGCAAGTCAAACTCTTGCTAATTCAAACCTTCCTGGTCCCCGATTTAATCTTACTGAATTAAAAACCTCATTTCTTAATCAAGGTCTCAACACTACGGATCTTGTTGCACTTTCAGGTGCTCATACGATTGGAAGAGGTGTATGCCTTTTATTCGTTGATCGATTATACAATTTCAGCAACACAGGCGCTCCAGATCCAACTCTTAACACAACCTTACTACAATCATTGCAAGCAATATGCCCTGATATTGGCAATCAAGCTACCAACCTCACCAATTTGGACGTAAGCACCCCCGATGCATTCGACTCAAACTACTACTCGAATCTCCAAGTTGGAAATGGTTTGTTTCAGAGTGATCAAGAGCTTTTTTCGACAACTGGTGCTGATACCATTGACATTGTCAATAGCTTTAGCAGCAATCAAACTCTTTTCTTTGAAGCTTTTAAGGCCTCCATGATTAAAATGGGTAATATTGGAGTGTTAACTGGTACTCAAGGTGAAGTTAGAACACACTGTAACTTTGTTAATACTGTTAGCCTTGCTACTAAAGTCACCAAAGATTCATCAGAAGATGGTATTGTTAGCTCATTCTAA

Protein sequence

>Msa0278940

MNSSFHLTLAALCCVVVVLGGFPFSSNAQLDPNFYKDTCPNVTSIVQSVLANVSQTDPRMLASFIRLHFHDCFVQGCDASLLLNDSSTIVSEQGALPNNNSIRGLDVVNQIKAAVELACPSVVSCADILALGANISSVLALGPDWEVPLGRRDSLNASQTLANSNLPGPRFNLTELKTSFLNQGLNTTDLVALSGAHTIGRGVCLLFVDRLYNFSNTGAPDPTLNTTLLQSLQAICPDIGNQATNLTNLDVSTPDAFDSNYYSNLQVGNGLFQSDQELFSTTGADTIDIVNSFSSNQTLFFEAFKASMIKMGNIGVLTGTQGEVRTHCNFVNTVSLATKVTKDSSEDGIVSSF*