AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0646440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0646440 MtrunA17_Chr4g0034831 78.662 314 19 5 10 291 85 382 4.97e-160 450
Msa0646440 MtrunA17_Chr4g0034831 47.867 211 70 5 14 201 192 385 1.60e-43 152
Msa0646440 MtrunA17_Chr4g0034831 46.512 172 67 5 12 160 215 384 1.42e-33 126
Msa0646440 MtrunA17_Chr3g0090451 31.515 330 169 13 13 291 137 460 2.05e-28 114
Msa0646440 MtrunA17_Chr3g0090451 30.952 336 175 14 7 291 235 564 2.33e-27 111
Msa0646440 MtrunA17_Chr3g0090451 31.454 337 172 15 7 291 209 538 2.89e-26 108
Msa0646440 MtrunA17_Chr3g0090451 30.189 318 148 13 7 291 314 590 6.83e-25 104
Msa0646440 MtrunA17_Chr3g0090451 31.596 307 147 13 13 291 111 382 4.46e-24 101
Msa0646440 MtrunA17_Chr3g0090471 31.894 301 139 14 7 291 212 462 4.97e-27 109
Msa0646440 MtrunA17_Chr3g0090471 30.172 348 155 16 10 291 111 436 1.13e-24 102
Msa0646440 MtrunA17_Chr3g0090471 32.698 315 158 14 13 291 88 384 6.74e-24 100
Msa0646440 MtrunA17_Chr3g0090471 32.317 328 156 18 6 291 55 358 1.51e-21 94.0
Msa0646440 MtrunA17_Chr3g0090471 33.939 165 78 7 10 161 319 465 1.28e-12 67.8
Msa0646440 MtrunA17_Chr3g0144461 31.343 335 177 16 4 291 75 403 3.32e-26 107
Msa0646440 MtrunA17_Chr3g0144461 32.459 305 136 17 10 287 60 321 5.33e-23 97.8
Msa0646440 MtrunA17_Chr3g0144461 29.693 293 135 14 13 288 188 426 1.89e-18 84.7
Msa0646440 MtrunA17_Chr3g0144471 33.681 288 145 15 10 270 91 359 4.79e-23 97.1
Msa0646440 MtrunA17_Chr3g0144471 29.779 272 146 11 34 291 73 313 7.97e-19 85.5
Msa0646440 MtrunA17_Chr3g0138221 28.115 313 177 14 10 289 75 372 5.83e-13 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 77 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATACCTTGTCGCACTTGGTC+TGG 0.282329 4_3:-52223722 None:intergenic
ATACTTTGTAGCACTTGGTC+TGG 0.301950 4_3:-52223572 None:intergenic
AGACCCACAATTTCAGCTTA+TGG 0.346620 4_3:+52222923 Msa0646440:CDS
ATACCAAGTGTTACAAAGTA+TGG 0.347597 4_3:+52223424 Msa0646440:CDS
ATACTTTGTAACACTTGGTC+TGG 0.359796 4_3:-52223797 None:intergenic
GGCAAGTTGTTCTTGTGCCT+TGG 0.361735 4_3:-52222819 None:intergenic
GTTACAAAAGCGAGAAGTTA+TGG 0.369310 4_3:+52223149 Msa0646440:CDS
TACCTTGTCGCACTTGGTCT+GGG 0.372376 4_3:-52223721 None:intergenic
TGATGACAAGATTAATATAA+AGG 0.378507 4_3:+52222946 Msa0646440:CDS
ATACCTTGTAACACTTGGTC+TGG 0.379154 4_3:-52223347 None:intergenic
ATAACTTGTAACACTTGGTA+TGG 0.386882 4_3:-52223497 None:intergenic
ATACTTTGTAACACTTGGTA+TGG 0.405216 4_3:-52223422 None:intergenic
ATAACTTGTAACACTTGGTA+TGG 0.408404 4_3:-52223647 None:intergenic
TCATTATACTTGGTGGCACT+TGG 0.424744 4_3:-52223877 None:intergenic
TACTTGGTGGCACTTGGCCT+AGG 0.430240 4_3:-52223871 None:intergenic
ATACCAAGTGTTACAAGTTA+TGG 0.431717 4_3:+52223649 Msa0646440:CDS
TACTTTGTAGCACTTGGTCT+GGG 0.436190 4_3:-52223571 None:intergenic
CCATCATACTTTGTAACACT+TGG 0.443820 4_3:-52223802 None:intergenic
GGTTCAAACTCGTCATTAAT+CGG 0.444386 4_3:-52223700 None:intergenic
CTGCCATACTTTGTAACACT+TGG 0.446156 4_3:-52223427 None:intergenic
AGGTTCAAACTCGTCGTTCA+CGG 0.447948 4_3:-52223851 None:intergenic
ATATTTAGAGTGTTTGTTGC+GGG 0.449640 4_3:-52222980 None:intergenic
CCATCATACTTTGTAGCACT+TGG 0.452826 4_3:-52223577 None:intergenic
GGTTCAAACTCGTCATTAAC+CGG 0.460302 4_3:-52223550 None:intergenic
CCGTCATACTTTGTAGCACT+TGG 0.470820 4_3:-52223196 None:intergenic
GGTTCAAACTCGTCATTCCT+TGG 0.473350 4_3:-52223250 None:intergenic
CCATCATACCTTGTGACACT+TGG 0.480501 4_3:-52223121 None:intergenic
TACCTTGTGACACTTGGCCT+TGG 0.486639 4_3:-52223115 None:intergenic
TTACAAAAGCGAGAAGTTAT+GGG 0.490342 4_3:+52223150 Msa0646440:CDS
GGTTCAAACTCGTCGTTCAC+GGG 0.491502 4_3:-52223850 None:intergenic
TAAGCTGAAATTGTGGGTCT+TGG 0.493615 4_3:-52222920 None:intergenic
GGTTCAAACCCGTCGTTCAT+CGG 0.495800 4_3:-52223775 None:intergenic
AACCCAGACCAAGTGTTACA+AGG 0.496658 4_3:+52223344 Msa0646440:CDS
TACCTTGTAACACTTGGTCT+GGG 0.512094 4_3:-52223346 None:intergenic
CCGTCATACCTTGTCGCACT+TGG 0.513672 4_3:-52223727 None:intergenic
TGAAACTACCGATGAACGAC+GGG 0.514049 4_3:+52223767 Msa0646440:CDS
CCAAGTGTCACAAGGTATGA+TGG 0.514391 4_3:+52223121 Msa0646440:CDS
GTTATAAGAGTATAAAACTA+CGG 0.524735 4_3:+52223305 Msa0646440:CDS
TACTTTGTAGCACTTGGCCT+AGG 0.529190 4_3:-52223190 None:intergenic
TCACCATAAGCTGAAATTGT+GGG 0.533189 4_3:-52222926 None:intergenic
TTATAAGAGTATAAAACTAC+GGG 0.540806 4_3:+52223306 Msa0646440:CDS
TACTTTGTAACACTTGGTCT+GGG 0.542995 4_3:-52223796 None:intergenic
TACTTTGTAACACTTGGTAT+GGG 0.551408 4_3:-52223421 None:intergenic
AGTACAAAACTATCGGTGAA+TGG 0.553539 4_3:+52223463 Msa0646440:CDS
TTGCCATAACTTGTAACACT+TGG 0.554234 4_3:-52223652 None:intergenic
CCGTCATACCTTGTAACACT+TGG 0.556480 4_3:-52223352 None:intergenic
GTTACAAAGTATGGCAGTGA+TGG 0.559355 4_3:+52223433 Msa0646440:CDS
CCAAGTGTTACAAAGTATGA+TGG 0.562453 4_3:+52223802 Msa0646440:CDS
TAACTTGTAACACTTGGTAT+GGG 0.572877 4_3:-52223646 None:intergenic
CTATAAGAGTATTAAACTAC+CGG 0.574017 4_3:+52223531 Msa0646440:intron
CCAAGTGCTACAAAGTATGA+TGG 0.583943 4_3:+52223577 Msa0646440:CDS
ATGAAACTACCGATGAACGA+CGG 0.584571 4_3:+52223766 Msa0646440:CDS
TAACTTGTAACACTTGGTAT+GGG 0.586261 4_3:-52223496 None:intergenic
AAGTATGACGGCGATGGTGA+AGG 0.589181 4_3:+52223208 Msa0646440:CDS
ATCACCATAAGCTGAAATTG+TGG 0.595027 4_3:-52222927 None:intergenic
GATATTTAGAGTGTTTGTTG+CGG 0.597566 4_3:-52222981 None:intergenic
GTTACAAGGTATGACGGTGA+TGG 0.613311 4_3:+52223283 Msa0646440:intron
TTATAAGAGTACAAAACTAT+CGG 0.615435 4_3:+52223456 Msa0646440:CDS
TTATCAGAGTACAAAACTAT+CGG 0.620899 4_3:+52223381 Msa0646440:CDS
AGCCAAGGCCAAGTGTCACA+AGG 0.624209 4_3:+52223113 Msa0646440:CDS
TTATCAGAGTACAAAACTAT+CGG 0.624493 4_3:+52223606 Msa0646440:CDS
GCTACAAAGTATGACGGCGA+TGG 0.626214 4_3:+52223202 Msa0646440:CDS
CCAAGTGCTACAAAGTATGA+CGG 0.634290 4_3:+52223196 Msa0646440:CDS
CCAAGTGTTACAAGGTATGA+CGG 0.636357 4_3:+52223277 Msa0646440:intron
CCAAGTGTTACAAGGTATGA+CGG 0.636357 4_3:+52223352 Msa0646440:CDS
TGTCCTCTGAGTTTGAACCT+AGG 0.640039 4_3:+52223173 Msa0646440:CDS
AACCCAGACCAAGTGCGACA+AGG 0.648941 4_3:+52223719 Msa0646440:CDS
ATATGACTATTAAACTACCA+AGG 0.661952 4_3:+52223233 Msa0646440:CDS
GCTACAAAGTATGATGGTGA+TGG 0.662559 4_3:+52223583 Msa0646440:CDS
GTCACAAGGTATGATGGTGA+TGG 0.664386 4_3:+52223127 Msa0646440:CDS
GCACAAGAACAACTTGCCAA+AGG 0.672197 4_3:+52222824 Msa0646440:CDS
GTTACAAGTTATGGCAACGA+TGG 0.674231 4_3:+52223658 Msa0646440:CDS
CGAACCTTTGAAGAACTCCA+AGG 0.682187 4_3:+52222802 None:intergenic
TGGCCTAGGTTCAAACTCAG+AGG 0.693294 4_3:-52223176 None:intergenic
TGAACGACGAGTTTGAACCT+AGG 0.706800 4_3:+52223854 Msa0646440:CDS
ATAAGAGTATAAAACTACGG+GGG 0.742499 4_3:+52223308 Msa0646440:CDS
TATAAGAGTATAAAACTACG+GGG 0.765134 4_3:+52223307 Msa0646440:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTAAATATCATAGAAAAAA+AGG + chr4_3:52222877-52222896 Msa0646440:intron 15.0%
!! TCTAAATATCATAGAAAAAA+AGG + chr4_3:52222994-52223013 Msa0646440:CDS 15.0%
!! ACTAAATATCATAGAAAAAA+AGG + chr4_3:52222877-52222896 Msa0646440:intron 15.0%
!! TCTAAATATCATAGAAAAAA+AGG + chr4_3:52222994-52223013 Msa0646440:CDS 15.0%
!! AAATATCATAGAAAAAAAGG+TGG + chr4_3:52222880-52222899 Msa0646440:intron 20.0%
!! TGATGACAAGATTAATATAA+AGG + chr4_3:52222946-52222965 Msa0646440:CDS 20.0%
!! AAATATCATAGAAAAAAAGG+TGG + chr4_3:52222880-52222899 Msa0646440:intron 20.0%
!! TGATGACAAGATTAATATAA+AGG + chr4_3:52222946-52222965 Msa0646440:CDS 20.0%
!!! GTTATAAGAGTATAAAACTA+CGG + chr4_3:52223305-52223324 Msa0646440:CDS 20.0%
!!! TTATAAGAGTATAAAACTAC+GGG + chr4_3:52223306-52223325 Msa0646440:CDS 20.0%
!!! TTATAAGAGTACAAAACTAT+CGG + chr4_3:52223456-52223475 Msa0646440:CDS 20.0%
!! AAATATCATAGAAAAAAAGG+TGG + chr4_3:52222880-52222899 Msa0646440:intron 20.0%
!! TGATGACAAGATTAATATAA+AGG + chr4_3:52222946-52222965 Msa0646440:CDS 20.0%
!! AAATATCATAGAAAAAAAGG+TGG + chr4_3:52222880-52222899 Msa0646440:intron 20.0%
!! TGATGACAAGATTAATATAA+AGG + chr4_3:52222946-52222965 Msa0646440:CDS 20.0%
!!! GTTATAAGAGTATAAAACTA+CGG + chr4_3:52223305-52223324 Msa0646440:CDS 20.0%
!!! TTATAAGAGTATAAAACTAC+GGG + chr4_3:52223306-52223325 Msa0646440:CDS 20.0%
!!! TTATAAGAGTACAAAACTAT+CGG + chr4_3:52223456-52223475 Msa0646440:CDS 20.0%
!! ATATAAAAGATTTTGAGCCA+AGG + chr4_3:52223098-52223117 Msa0646440:CDS 25.0%
! ATATGACTATTAAACTACCA+AGG + chr4_3:52223233-52223252 Msa0646440:CDS 25.0%
!! TATAAGAGTATAAAACTACG+GGG + chr4_3:52223307-52223326 Msa0646440:CDS 25.0%
! TTATCAGAGTACAAAACTAT+CGG + chr4_3:52223381-52223400 Msa0646440:CDS 25.0%
!!! CTATAAGAGTATTAAACTAC+CGG + chr4_3:52223531-52223550 Msa0646440:intron 25.0%
! TTATCAGAGTACAAAACTAT+CGG + chr4_3:52223381-52223400 Msa0646440:CDS 25.0%
!! ATATAAAAGATTTTGAGCCA+AGG + chr4_3:52223098-52223117 Msa0646440:CDS 25.0%
! ATATGACTATTAAACTACCA+AGG + chr4_3:52223233-52223252 Msa0646440:CDS 25.0%
!! TATAAGAGTATAAAACTACG+GGG + chr4_3:52223307-52223326 Msa0646440:CDS 25.0%
! TTATCAGAGTACAAAACTAT+CGG + chr4_3:52223381-52223400 Msa0646440:CDS 25.0%
!!! CTATAAGAGTATTAAACTAC+CGG + chr4_3:52223531-52223550 Msa0646440:intron 25.0%
! TTATCAGAGTACAAAACTAT+CGG + chr4_3:52223381-52223400 Msa0646440:CDS 25.0%
! GATATTTAGTGTGTTTGTTG+CGG - chr4_3:52222867-52222886 None:intergenic 30.0%
! ATATTTAGAGTGTTTGTTGC+GGG - chr4_3:52222983-52223002 None:intergenic 30.0%
! GATATTTAGAGTGTTTGTTG+CGG - chr4_3:52222984-52223003 None:intergenic 30.0%
TTACAAAAGCGAGAAGTTAT+GGG + chr4_3:52223150-52223169 Msa0646440:CDS 30.0%
! ATAAGAGTATAAAACTACGG+GGG + chr4_3:52223308-52223327 Msa0646440:CDS 30.0%
TACTTTGTAACACTTGGTAT+GGG - chr4_3:52223424-52223443 None:intergenic 30.0%
ATACTTTGTAACACTTGGTA+TGG - chr4_3:52223425-52223444 None:intergenic 30.0%
ATACCAAGTGTTACAAAGTA+TGG + chr4_3:52223424-52223443 Msa0646440:CDS 30.0%
! TAACTTGTAACACTTGGTAT+GGG - chr4_3:52223499-52223518 None:intergenic 30.0%
! ATAACTTGTAACACTTGGTA+TGG - chr4_3:52223500-52223519 None:intergenic 30.0%
ATACCAAGTGTTACAAGTTA+TGG + chr4_3:52223499-52223518 Msa0646440:intron 30.0%
! TAACTTGTAACACTTGGTAT+GGG - chr4_3:52223499-52223518 None:intergenic 30.0%
! ATAACTTGTAACACTTGGTA+TGG - chr4_3:52223500-52223519 None:intergenic 30.0%
ATACCAAGTGTTACAAGTTA+TGG + chr4_3:52223499-52223518 Msa0646440:intron 30.0%
! GATATTTAGTGTGTTTGTTG+CGG - chr4_3:52222867-52222886 None:intergenic 30.0%
! ATATTTAGAGTGTTTGTTGC+GGG - chr4_3:52222983-52223002 None:intergenic 30.0%
! GATATTTAGAGTGTTTGTTG+CGG - chr4_3:52222984-52223003 None:intergenic 30.0%
TTACAAAAGCGAGAAGTTAT+GGG + chr4_3:52223150-52223169 Msa0646440:CDS 30.0%
! ATAAGAGTATAAAACTACGG+GGG + chr4_3:52223308-52223327 Msa0646440:CDS 30.0%
TACTTTGTAACACTTGGTAT+GGG - chr4_3:52223424-52223443 None:intergenic 30.0%
ATACTTTGTAACACTTGGTA+TGG - chr4_3:52223425-52223444 None:intergenic 30.0%
ATACCAAGTGTTACAAAGTA+TGG + chr4_3:52223424-52223443 Msa0646440:CDS 30.0%
! TAACTTGTAACACTTGGTAT+GGG - chr4_3:52223499-52223518 None:intergenic 30.0%
! ATAACTTGTAACACTTGGTA+TGG - chr4_3:52223500-52223519 None:intergenic 30.0%
ATACCAAGTGTTACAAGTTA+TGG + chr4_3:52223499-52223518 Msa0646440:intron 30.0%
! TAACTTGTAACACTTGGTAT+GGG - chr4_3:52223499-52223518 None:intergenic 30.0%
! ATAACTTGTAACACTTGGTA+TGG - chr4_3:52223500-52223519 None:intergenic 30.0%
ATACCAAGTGTTACAAGTTA+TGG + chr4_3:52223499-52223518 Msa0646440:intron 30.0%
TCACCATAAGCTGAAATTGT+GGG - chr4_3:52222929-52222948 None:intergenic 35.0%
ATCACCATAAGCTGAAATTG+TGG - chr4_3:52222930-52222949 None:intergenic 35.0%
TCACCATAAGCTGAAATTGT+GGG - chr4_3:52222929-52222948 None:intergenic 35.0%
ATCACCATAAGCTGAAATTG+TGG - chr4_3:52222930-52222949 None:intergenic 35.0%
GTTACAAAAGCGAGAAGTTA+TGG + chr4_3:52223149-52223168 Msa0646440:CDS 35.0%
AGTACAAAACTATCGGTGAA+TGG + chr4_3:52223388-52223407 Msa0646440:CDS 35.0%
! CTTCCATAACTTGTAACACT+TGG - chr4_3:52223505-52223524 None:intergenic 35.0%
GTTACAAGTTATGGAAGTGA+TGG + chr4_3:52223508-52223527 Msa0646440:intron 35.0%
! TTGCCATAACTTGTAACACT+TGG - chr4_3:52223655-52223674 None:intergenic 35.0%
GGTTCAAACTCGTCATTAAT+CGG - chr4_3:52223703-52223722 None:intergenic 35.0%
TACTTTGTAACACTTGGTCT+GGG - chr4_3:52223799-52223818 None:intergenic 35.0%
ATACTTTGTAACACTTGGTC+TGG - chr4_3:52223800-52223819 None:intergenic 35.0%
CCATCATACTTTGTAACACT+TGG - chr4_3:52223805-52223824 None:intergenic 35.0%
CCAAGTGTTACAAAGTATGA+TGG + chr4_3:52223802-52223821 Msa0646440:CDS 35.0%
TCACCATAAGCTGAAATTGT+GGG - chr4_3:52222929-52222948 None:intergenic 35.0%
ATCACCATAAGCTGAAATTG+TGG - chr4_3:52222930-52222949 None:intergenic 35.0%
TCACCATAAGCTGAAATTGT+GGG - chr4_3:52222929-52222948 None:intergenic 35.0%
ATCACCATAAGCTGAAATTG+TGG - chr4_3:52222930-52222949 None:intergenic 35.0%
GTTACAAAAGCGAGAAGTTA+TGG + chr4_3:52223149-52223168 Msa0646440:CDS 35.0%
AGTACAAAACTATCGGTGAA+TGG + chr4_3:52223388-52223407 Msa0646440:CDS 35.0%
! CTTCCATAACTTGTAACACT+TGG - chr4_3:52223505-52223524 None:intergenic 35.0%
GTTACAAGTTATGGAAGTGA+TGG + chr4_3:52223508-52223527 Msa0646440:intron 35.0%
! TTGCCATAACTTGTAACACT+TGG - chr4_3:52223655-52223674 None:intergenic 35.0%
GGTTCAAACTCGTCATTAAT+CGG - chr4_3:52223703-52223722 None:intergenic 35.0%
TACTTTGTAACACTTGGTCT+GGG - chr4_3:52223799-52223818 None:intergenic 35.0%
ATACTTTGTAACACTTGGTC+TGG - chr4_3:52223800-52223819 None:intergenic 35.0%
CCATCATACTTTGTAACACT+TGG - chr4_3:52223805-52223824 None:intergenic 35.0%
CCAAGTGTTACAAAGTATGA+TGG + chr4_3:52223802-52223821 Msa0646440:CDS 35.0%
TAAGCTGAAATTGTGGGTCT+TGG - chr4_3:52222923-52222942 None:intergenic 40.0%
AGACCCACAATTTCAGCTTA+TGG + chr4_3:52222923-52222942 Msa0646440:CDS 40.0%
TAAGCTGAAATTGTGGGTCT+TGG - chr4_3:52222923-52222942 None:intergenic 40.0%
AGACCCACAATTTCAGCTTA+TGG + chr4_3:52222923-52222942 Msa0646440:CDS 40.0%
CCAAGTGCTACAAAGTATGA+CGG + chr4_3:52223196-52223215 Msa0646440:CDS 40.0%
TACCTTGTAACACTTGGTCT+GGG - chr4_3:52223274-52223293 None:intergenic 40.0%
ATACCTTGTAACACTTGGTC+TGG - chr4_3:52223275-52223294 None:intergenic 40.0%
CCAAGTGTTACAAGGTATGA+CGG + chr4_3:52223277-52223296 Msa0646440:intron 40.0%
TACCTTGTAACACTTGGTCT+GGG - chr4_3:52223274-52223293 None:intergenic 40.0%
ATACCTTGTAACACTTGGTC+TGG - chr4_3:52223275-52223294 None:intergenic 40.0%
CCAAGTGTTACAAGGTATGA+CGG + chr4_3:52223277-52223296 Msa0646440:intron 40.0%
CTGCCATACTTTGTAACACT+TGG - chr4_3:52223430-52223449 None:intergenic 40.0%
GTTACAAAGTATGGCAGTGA+TGG + chr4_3:52223433-52223452 Msa0646440:CDS 40.0%
GGTTCAAACTCGTCATTAAC+CGG - chr4_3:52223553-52223572 None:intergenic 40.0%
TACTTTGTAGCACTTGGTCT+GGG - chr4_3:52223574-52223593 None:intergenic 40.0%
ATACTTTGTAGCACTTGGTC+TGG - chr4_3:52223575-52223594 None:intergenic 40.0%
CCATCATACTTTGTAGCACT+TGG - chr4_3:52223580-52223599 None:intergenic 40.0%
CCAAGTGCTACAAAGTATGA+TGG + chr4_3:52223196-52223215 Msa0646440:CDS 40.0%
! GCTACAAAGTATGATGGTGA+TGG + chr4_3:52223583-52223602 Msa0646440:CDS 40.0%
GTTACAAGTTATGGCAACGA+TGG + chr4_3:52223658-52223677 Msa0646440:CDS 40.0%
ATGAAACTACCGATGAACGA+CGG + chr4_3:52223766-52223785 Msa0646440:CDS 40.0%
TAAGCTGAAATTGTGGGTCT+TGG - chr4_3:52222923-52222942 None:intergenic 40.0%
AGACCCACAATTTCAGCTTA+TGG + chr4_3:52222923-52222942 Msa0646440:CDS 40.0%
TAAGCTGAAATTGTGGGTCT+TGG - chr4_3:52222923-52222942 None:intergenic 40.0%
AGACCCACAATTTCAGCTTA+TGG + chr4_3:52222923-52222942 Msa0646440:CDS 40.0%
CCAAGTGCTACAAAGTATGA+CGG + chr4_3:52223196-52223215 Msa0646440:CDS 40.0%
TACCTTGTAACACTTGGTCT+GGG - chr4_3:52223274-52223293 None:intergenic 40.0%
ATACCTTGTAACACTTGGTC+TGG - chr4_3:52223275-52223294 None:intergenic 40.0%
CCAAGTGTTACAAGGTATGA+CGG + chr4_3:52223277-52223296 Msa0646440:intron 40.0%
TACCTTGTAACACTTGGTCT+GGG - chr4_3:52223274-52223293 None:intergenic 40.0%
ATACCTTGTAACACTTGGTC+TGG - chr4_3:52223275-52223294 None:intergenic 40.0%
CCAAGTGTTACAAGGTATGA+CGG + chr4_3:52223277-52223296 Msa0646440:intron 40.0%
CTGCCATACTTTGTAACACT+TGG - chr4_3:52223430-52223449 None:intergenic 40.0%
GTTACAAAGTATGGCAGTGA+TGG + chr4_3:52223433-52223452 Msa0646440:CDS 40.0%
GGTTCAAACTCGTCATTAAC+CGG - chr4_3:52223553-52223572 None:intergenic 40.0%
TACTTTGTAGCACTTGGTCT+GGG - chr4_3:52223574-52223593 None:intergenic 40.0%
ATACTTTGTAGCACTTGGTC+TGG - chr4_3:52223575-52223594 None:intergenic 40.0%
CCATCATACTTTGTAGCACT+TGG - chr4_3:52223580-52223599 None:intergenic 40.0%
CCAAGTGCTACAAAGTATGA+TGG + chr4_3:52223196-52223215 Msa0646440:CDS 40.0%
! GCTACAAAGTATGATGGTGA+TGG + chr4_3:52223583-52223602 Msa0646440:CDS 40.0%
GTTACAAGTTATGGCAACGA+TGG + chr4_3:52223658-52223677 Msa0646440:CDS 40.0%
ATGAAACTACCGATGAACGA+CGG + chr4_3:52223766-52223785 Msa0646440:CDS 40.0%
GCACAAGAACAACTTGCCAA+AGG + chr4_3:52222824-52222843 Msa0646440:CDS 45.0%
ATGCTCATCGCACTTACCTT+TGG - chr4_3:52222843-52222862 None:intergenic 45.0%
CCATCATACCTTGTGACACT+TGG - chr4_3:52223124-52223143 None:intergenic 45.0%
CCAAGTGTCACAAGGTATGA+TGG + chr4_3:52223121-52223140 Msa0646440:CDS 45.0%
! GTCACAAGGTATGATGGTGA+TGG + chr4_3:52223127-52223146 Msa0646440:CDS 45.0%
TGTCCTCTGAGTTTGAACCT+AGG + chr4_3:52223173-52223192 Msa0646440:CDS 45.0%
TACTTTGTAGCACTTGGCCT+AGG - chr4_3:52223193-52223212 None:intergenic 45.0%
CCGTCATACTTTGTAGCACT+TGG - chr4_3:52223199-52223218 None:intergenic 45.0%
GGTTCAAACTCGTCATTCCT+TGG - chr4_3:52223253-52223272 None:intergenic 45.0%
AACCCAGACCAAGTGTTACA+AGG + chr4_3:52223269-52223288 Msa0646440:intron 45.0%
CCGTCATACCTTGTAACACT+TGG - chr4_3:52223280-52223299 None:intergenic 45.0%
GTTACAAGGTATGACGGTGA+TGG + chr4_3:52223283-52223302 Msa0646440:intron 45.0%
AACCCAGACCAAGTGTTACA+AGG + chr4_3:52223269-52223288 Msa0646440:intron 45.0%
CCGTCATACCTTGTAACACT+TGG - chr4_3:52223280-52223299 None:intergenic 45.0%
TGAAACTACCGATGAACGAC+GGG + chr4_3:52223767-52223786 Msa0646440:CDS 45.0%
AGGTTCAAACTCGTCGTTCA+CGG - chr4_3:52223854-52223873 None:intergenic 45.0%
TGAACGACGAGTTTGAACCT+AGG + chr4_3:52223854-52223873 Msa0646440:CDS 45.0%
GCACAAGAACAACTTGCCAA+AGG + chr4_3:52222824-52222843 Msa0646440:CDS 45.0%
ATGCTCATCGCACTTACCTT+TGG - chr4_3:52222843-52222862 None:intergenic 45.0%
CCATCATACCTTGTGACACT+TGG - chr4_3:52223124-52223143 None:intergenic 45.0%
CCAAGTGTCACAAGGTATGA+TGG + chr4_3:52223121-52223140 Msa0646440:CDS 45.0%
! GTCACAAGGTATGATGGTGA+TGG + chr4_3:52223127-52223146 Msa0646440:CDS 45.0%
TGTCCTCTGAGTTTGAACCT+AGG + chr4_3:52223173-52223192 Msa0646440:CDS 45.0%
TACTTTGTAGCACTTGGCCT+AGG - chr4_3:52223193-52223212 None:intergenic 45.0%
CCGTCATACTTTGTAGCACT+TGG - chr4_3:52223199-52223218 None:intergenic 45.0%
GGTTCAAACTCGTCATTCCT+TGG - chr4_3:52223253-52223272 None:intergenic 45.0%
AACCCAGACCAAGTGTTACA+AGG + chr4_3:52223269-52223288 Msa0646440:intron 45.0%
CCGTCATACCTTGTAACACT+TGG - chr4_3:52223280-52223299 None:intergenic 45.0%
GTTACAAGGTATGACGGTGA+TGG + chr4_3:52223283-52223302 Msa0646440:intron 45.0%
AACCCAGACCAAGTGTTACA+AGG + chr4_3:52223269-52223288 Msa0646440:intron 45.0%
CCGTCATACCTTGTAACACT+TGG - chr4_3:52223280-52223299 None:intergenic 45.0%
TGAAACTACCGATGAACGAC+GGG + chr4_3:52223767-52223786 Msa0646440:CDS 45.0%
AGGTTCAAACTCGTCGTTCA+CGG - chr4_3:52223854-52223873 None:intergenic 45.0%
TGAACGACGAGTTTGAACCT+AGG + chr4_3:52223854-52223873 Msa0646440:CDS 45.0%
GGCAAGTTGTTCTTGTGCCT+TGG - chr4_3:52222822-52222841 None:intergenic 50.0%
TACCTTGTGACACTTGGCCT+TGG - chr4_3:52223118-52223137 None:intergenic 50.0%
TGGCCTAGGTTCAAACTCAG+AGG - chr4_3:52223179-52223198 None:intergenic 50.0%
GCTACAAAGTATGACGGCGA+TGG + chr4_3:52223202-52223221 Msa0646440:CDS 50.0%
AAGTATGACGGCGATGGTGA+AGG + chr4_3:52223208-52223227 Msa0646440:CDS 50.0%
TACCTTGTCGCACTTGGTCT+GGG - chr4_3:52223724-52223743 None:intergenic 50.0%
ATACCTTGTCGCACTTGGTC+TGG - chr4_3:52223725-52223744 None:intergenic 50.0%
CCAAGTGCGACAAGGTATGA+CGG + chr4_3:52223727-52223746 Msa0646440:intron 50.0%
GGTTCAAACCCGTCGTTCAT+CGG - chr4_3:52223778-52223797 None:intergenic 50.0%
GGTTCAAACTCGTCGTTCAC+GGG - chr4_3:52223853-52223872 None:intergenic 50.0%
GTTGTTCTTGTGCCTTGGAG+TGG - chr4_3:52222817-52222836 None:intergenic 50.0%
GGCAAGTTGTTCTTGTGCCT+TGG - chr4_3:52222822-52222841 None:intergenic 50.0%
TACCTTGTGACACTTGGCCT+TGG - chr4_3:52223118-52223137 None:intergenic 50.0%
TGGCCTAGGTTCAAACTCAG+AGG - chr4_3:52223179-52223198 None:intergenic 50.0%
GCTACAAAGTATGACGGCGA+TGG + chr4_3:52223202-52223221 Msa0646440:CDS 50.0%
AAGTATGACGGCGATGGTGA+AGG + chr4_3:52223208-52223227 Msa0646440:CDS 50.0%
TACCTTGTCGCACTTGGTCT+GGG - chr4_3:52223724-52223743 None:intergenic 50.0%
ATACCTTGTCGCACTTGGTC+TGG - chr4_3:52223725-52223744 None:intergenic 50.0%
CCAAGTGCGACAAGGTATGA+CGG + chr4_3:52223727-52223746 Msa0646440:intron 50.0%
GGTTCAAACCCGTCGTTCAT+CGG - chr4_3:52223778-52223797 None:intergenic 50.0%
GGTTCAAACTCGTCGTTCAC+GGG - chr4_3:52223853-52223872 None:intergenic 50.0%
AGCCAAGGCCAAGTGTCACA+AGG + chr4_3:52223113-52223132 Msa0646440:CDS 55.0%
AACCCAGACCAAGTGCGACA+AGG + chr4_3:52223719-52223738 Msa0646440:CDS 55.0%
CCGTCATACCTTGTCGCACT+TGG - chr4_3:52223730-52223749 None:intergenic 55.0%
AGCCAAGGCCAAGTGTCACA+AGG + chr4_3:52223113-52223132 Msa0646440:CDS 55.0%
AACCCAGACCAAGTGCGACA+AGG + chr4_3:52223719-52223738 Msa0646440:CDS 55.0%
CCGTCATACCTTGTCGCACT+TGG - chr4_3:52223730-52223749 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 52222816 52223888 52222816 ID=Msa0646440;Name=Msa0646440
chr4_3 mRNA 52222816 52223888 52222816 ID=Msa0646440-mRNA-1;Parent=Msa0646440;Name=Msa0646440-mRNA-1;_AED=0.17;_eAED=0.20;_QI=0|0.2|0|1|0|0|6|0|291
chr4_3 exon 52222816 52222845 52222816 ID=Msa0646440-mRNA-1:exon:12772;Parent=Msa0646440-mRNA-1
chr4_3 exon 52222899 52223015 52222899 ID=Msa0646440-mRNA-1:exon:12773;Parent=Msa0646440-mRNA-1
chr4_3 exon 52223085 52223263 52223085 ID=Msa0646440-mRNA-1:exon:12774;Parent=Msa0646440-mRNA-1
chr4_3 exon 52223291 52223507 52223291 ID=Msa0646440-mRNA-1:exon:12775;Parent=Msa0646440-mRNA-1
chr4_3 exon 52223538 52223740 52223538 ID=Msa0646440-mRNA-1:exon:12776;Parent=Msa0646440-mRNA-1
chr4_3 exon 52223762 52223888 52223762 ID=Msa0646440-mRNA-1:exon:12777;Parent=Msa0646440-mRNA-1
chr4_3 CDS 52222816 52222845 52222816 ID=Msa0646440-mRNA-1:cds;Parent=Msa0646440-mRNA-1
chr4_3 CDS 52222899 52223015 52222899 ID=Msa0646440-mRNA-1:cds;Parent=Msa0646440-mRNA-1
chr4_3 CDS 52223085 52223263 52223085 ID=Msa0646440-mRNA-1:cds;Parent=Msa0646440-mRNA-1
chr4_3 CDS 52223291 52223507 52223291 ID=Msa0646440-mRNA-1:cds;Parent=Msa0646440-mRNA-1
chr4_3 CDS 52223538 52223740 52223538 ID=Msa0646440-mRNA-1:cds;Parent=Msa0646440-mRNA-1
chr4_3 CDS 52223762 52223888 52223762 ID=Msa0646440-mRNA-1:cds;Parent=Msa0646440-mRNA-1
Gene Sequence

>Msa0646440

ACTCCAAGGCACAAGAACAACTTGCCAAAGGTGGTCACAGAAGAATTTCAACCAAGACCCACAATTTCAGCTTATGGTGATGACAAGATTAATATAAAGGTAACTGAGCATCCCGCAACAAACACTCTAAATATCATAGAAAAAAAGGTAACTGAGAAACATATAAAAGATTTTGAGCCAAGGCCAAGTGTCACAAGGTATGATGGTGATGGTTACAAAAGCGAGAAGTTATGGGTGTCCTCTGAGTTTGAACCTAGGCCAAGTGCTACAAAGTATGACGGCGATGGTGAAGGTTATATGACTATTAAACTACCAAGGAATGACGAGTATGACGGTGATGGTTATAAGAGTATAAAACTACGGGGGAATGATGAGTTTGAACCCAGACCAAGTGTTACAAGGTATGACGGTGACGATTATCAGAGTACAAAACTATCGGTGAATAATGATTTTGAACCCATACCAAGTGTTACAAAGTATGGCAGTGATGGTTATAAGAGTACAAAACTATCGGTGAATGGTGAGTTTGAACCCATACCAAGTAGTATTAAACTACCGGTTAATGACGAGTTTGAACCCAGACCAAGTGCTACAAAGTATGATGGTGATGGTTATCAGAGTACAAAACTATCGGTGAATAGTGAGTTTGAACCCATACCAAGTGTTACAAGTTATGGCAACGATGGCTATAAGAGTATGAAACTACCGATTAATGACGAGTTTGAACCCAGACCAAGTGCGACAAGAAAAATGAAACTACCGATGAACGACGGGTTTGAACCCAGACCAAGTGTTACAAAGTATGATGGTGATAATAACAAAAGCAAGAAGCTACCCGTGAACGACGAGTTTGAACCTAGGCCAAGTGCCACC

Protein sequence

>Msa0646440

TPRHKNNLPKVVTEEFQPRPTISAYGDDKINIKVTEHPATNTLNIIEKKVTEKHIKDFEPRPSVTRYDGDGYKSEKLWVSSEFEPRPSATKYDGDGEGYMTIKLPRNDEYDGDGYKSIKLRGNDEFEPRPSVTRYDGDDYQSTKLSVNNDFEPIPSVTKYGSDGYKSTKLSVNGEFEPIPSSIKLPVNDEFEPRPSATKYDGDGYQSTKLSVNSEFEPIPSVTSYGNDGYKSMKLPINDEFEPRPSATRKMKLPMNDGFEPRPSVTKYDGDNNKSKKLPVNDEFEPRPSAT