AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0605480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0605480 MtrunA17_Chr4g0034831 78.025 314 19 5 10 289 85 382 3.38e-158 446
Msa0605480 MtrunA17_Chr4g0034831 46.512 172 67 5 12 160 215 384 1.20e-33 126
Msa0605480 MtrunA17_Chr3g0090471 31.773 299 140 14 7 289 212 462 3.94e-27 109
Msa0605480 MtrunA17_Chr3g0090471 28.198 344 165 12 10 289 111 436 5.07e-23 98.2
Msa0605480 MtrunA17_Chr3g0090471 33.333 303 144 17 13 289 88 358 4.47e-22 95.5
Msa0605480 MtrunA17_Chr3g0090471 32.333 300 139 15 6 289 55 306 1.03e-21 94.4
Msa0605480 MtrunA17_Chr3g0090471 33.939 165 78 7 10 161 319 465 1.17e-12 67.8
Msa0605480 MtrunA17_Chr3g0090451 32.704 318 153 16 13 289 137 434 4.94e-27 110
Msa0605480 MtrunA17_Chr3g0090451 31.987 297 142 14 7 289 314 564 3.12e-26 107
Msa0605480 MtrunA17_Chr3g0090451 32.602 319 164 16 7 289 209 512 6.78e-26 107
Msa0605480 MtrunA17_Chr3g0090451 30.124 322 160 14 11 289 83 382 7.96e-23 98.2
Msa0605480 MtrunA17_Chr3g0090451 31.818 220 105 8 7 199 392 593 2.64e-18 84.7
Msa0605480 MtrunA17_Chr3g0144461 31.045 335 176 16 4 289 75 403 1.84e-25 104
Msa0605480 MtrunA17_Chr3g0144461 31.494 308 133 17 10 285 60 321 8.59e-22 94.4
Msa0605480 MtrunA17_Chr3g0144461 30.584 291 133 16 13 286 188 426 8.27e-19 85.9
Msa0605480 MtrunA17_Chr3g0144471 33.003 303 142 16 10 289 91 355 1.62e-22 95.5
Msa0605480 MtrunA17_Chr3g0144471 32.482 274 139 12 10 268 117 359 2.19e-21 92.4
Msa0605480 MtrunA17_Chr3g0144471 30.370 270 145 11 34 289 73 313 1.28e-19 87.4
Msa0605480 MtrunA17_Chr3g0138221 29.260 311 174 15 10 287 75 372 3.83e-14 72.4
Msa0605480 MtrunA17_Chr3g0138221 31.538 260 130 14 44 287 67 294 2.39e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 75 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATACCTTGTCGCACTTGGTC+TGG 0.282329 4_2:-51404852 None:intergenic
ATACTTTGTAGCACTTGGTC+TGG 0.301950 4_2:-51404702 None:intergenic
AGACCCACAATTTCAGCTTA+TGG 0.346620 4_2:+51404053 Msa0605480:CDS
ATACCAAGTGTTACAAAGTA+TGG 0.347597 4_2:+51404554 Msa0605480:CDS
ATACTTTGTAACACTTGGTC+TGG 0.359796 4_2:-51404927 None:intergenic
GGCAAGTTGTTCTTGTGCCT+TGG 0.361735 4_2:-51403949 None:intergenic
GTTACAAAAGCGAGAAGTTA+TGG 0.369310 4_2:+51404279 Msa0605480:CDS
TACCTTGTCGCACTTGGTCT+GGG 0.372376 4_2:-51404851 None:intergenic
TGATGACAAGATTAATATAA+AGG 0.378507 4_2:+51404076 Msa0605480:CDS
ATACCTTGTAACACTTGGTC+TGG 0.379154 4_2:-51404477 None:intergenic
ATACTTTGTAACACTTGGTA+TGG 0.405216 4_2:-51404552 None:intergenic
ATAACTTGTAACACTTGGTA+TGG 0.408404 4_2:-51404777 None:intergenic
TCATTATACTTGGTGGCACT+TGG 0.424744 4_2:-51405007 None:intergenic
TACTTGGTGGCACTTGGCCT+AGG 0.430240 4_2:-51405001 None:intergenic
ATACCAAGTGTTACAAGTTA+TGG 0.431717 4_2:+51404779 Msa0605480:CDS
TACTTTGTAGCACTTGGTCT+GGG 0.436190 4_2:-51404701 None:intergenic
CCATCATACTTTGTAACACT+TGG 0.443820 4_2:-51404932 None:intergenic
GGTTCAAACTCGTCATTAAT+CGG 0.444386 4_2:-51404830 None:intergenic
CTGCCATACTTTGTAACACT+TGG 0.446156 4_2:-51404557 None:intergenic
AGGTTCAAACTCGTCGTTCA+CGG 0.447948 4_2:-51404981 None:intergenic
ATATTTAGAGTGTTTGTTGC+GGG 0.449640 4_2:-51404110 None:intergenic
CCATCATACTTTGTAGCACT+TGG 0.452826 4_2:-51404707 None:intergenic
GGTTCAAACTCGTCATTAAC+CGG 0.460302 4_2:-51404680 None:intergenic
CCGTCATACTTTGTAGCACT+TGG 0.470820 4_2:-51404326 None:intergenic
GGTTCAAACTCGTCATTCCT+TGG 0.473350 4_2:-51404380 None:intergenic
CCATCATACCTTGTGACACT+TGG 0.480501 4_2:-51404251 None:intergenic
TACCTTGTGACACTTGGCCT+TGG 0.486639 4_2:-51404245 None:intergenic
TTACAAAAGCGAGAAGTTAT+GGG 0.490342 4_2:+51404280 Msa0605480:CDS
GGTTCAAACTCGTCGTTCAC+GGG 0.491502 4_2:-51404980 None:intergenic
TAAGCTGAAATTGTGGGTCT+TGG 0.493615 4_2:-51404050 None:intergenic
GGTTCAAACCCGTCGTTCAT+CGG 0.495800 4_2:-51404905 None:intergenic
AACCCAGACCAAGTGTTACA+AGG 0.496658 4_2:+51404474 Msa0605480:CDS
TACCTTGTAACACTTGGTCT+GGG 0.512094 4_2:-51404476 None:intergenic
CCGTCATACCTTGTCGCACT+TGG 0.513672 4_2:-51404857 None:intergenic
TGAAACTACCGATGAACGAC+GGG 0.514049 4_2:+51404897 Msa0605480:CDS
CCAAGTGTCACAAGGTATGA+TGG 0.514391 4_2:+51404251 Msa0605480:CDS
GTTATAAGAGTATAAAACTA+CGG 0.524735 4_2:+51404435 Msa0605480:CDS
TACTTTGTAGCACTTGGCCT+AGG 0.529190 4_2:-51404320 None:intergenic
TCACCATAAGCTGAAATTGT+GGG 0.533189 4_2:-51404056 None:intergenic
TTATAAGAGTATAAAACTAC+GGG 0.540806 4_2:+51404436 Msa0605480:CDS
TACTTTGTAACACTTGGTCT+GGG 0.542995 4_2:-51404926 None:intergenic
TACTTTGTAACACTTGGTAT+GGG 0.551408 4_2:-51404551 None:intergenic
AGTACAAAACTATCGGTGAA+TGG 0.553539 4_2:+51404593 Msa0605480:CDS
TTGCCATAACTTGTAACACT+TGG 0.554234 4_2:-51404782 None:intergenic
CCGTCATACCTTGTAACACT+TGG 0.556480 4_2:-51404482 None:intergenic
GTTACAAAGTATGGCAGTGA+TGG 0.559355 4_2:+51404563 Msa0605480:CDS
CCAAGTGTTACAAAGTATGA+TGG 0.562453 4_2:+51404932 Msa0605480:CDS
TAACTTGTAACACTTGGTAT+GGG 0.572877 4_2:-51404776 None:intergenic
CTATAAGAGTATTAAACTAC+CGG 0.574017 4_2:+51404661 Msa0605480:CDS
CCAAGTGCTACAAAGTATGA+TGG 0.583943 4_2:+51404707 Msa0605480:CDS
ATGAAACTACCGATGAACGA+CGG 0.584571 4_2:+51404896 Msa0605480:CDS
AAGTATGACGGCGATGGTGA+AGG 0.589181 4_2:+51404338 Msa0605480:CDS
ATCACCATAAGCTGAAATTG+TGG 0.595027 4_2:-51404057 None:intergenic
GATATTTAGAGTGTTTGTTG+CGG 0.597566 4_2:-51404111 None:intergenic
GTTACAAGGTATGACGGTGA+TGG 0.613311 4_2:+51404413 Msa0605480:intron
TTATAAGAGTACAAAACTAT+CGG 0.615435 4_2:+51404586 Msa0605480:CDS
TTATCAGAGTACAAAACTAT+CGG 0.620899 4_2:+51404511 Msa0605480:CDS
AGCCAAGGCCAAGTGTCACA+AGG 0.624209 4_2:+51404243 Msa0605480:CDS
TTATCAGAGTACAAAACTAT+CGG 0.624493 4_2:+51404736 Msa0605480:CDS
GCTACAAAGTATGACGGCGA+TGG 0.626214 4_2:+51404332 Msa0605480:CDS
CCAAGTGCTACAAAGTATGA+CGG 0.634290 4_2:+51404326 Msa0605480:CDS
CCAAGTGTTACAAGGTATGA+CGG 0.636357 4_2:+51404407 Msa0605480:intron
CCAAGTGTTACAAGGTATGA+CGG 0.636357 4_2:+51404482 Msa0605480:CDS
TGTCCTCTGAGTTTGAACCT+AGG 0.640039 4_2:+51404303 Msa0605480:CDS
AACCCAGACCAAGTGCGACA+AGG 0.648941 4_2:+51404849 Msa0605480:CDS
ATATGACTATTAAACTACCA+AGG 0.661952 4_2:+51404363 Msa0605480:CDS
GCTACAAAGTATGATGGTGA+TGG 0.662559 4_2:+51404713 Msa0605480:CDS
GTCACAAGGTATGATGGTGA+TGG 0.664386 4_2:+51404257 Msa0605480:CDS
GCACAAGAACAACTTGCCAA+AGG 0.672197 4_2:+51403954 Msa0605480:CDS
GTTACAAGTTATGGCAACGA+TGG 0.674231 4_2:+51404788 Msa0605480:CDS
CGAACCTTTGAAGAACTCCA+AGG 0.682187 4_2:+51403932 None:intergenic
TGGCCTAGGTTCAAACTCAG+AGG 0.693294 4_2:-51404306 None:intergenic
TGAACGACGAGTTTGAACCT+AGG 0.706800 4_2:+51404984 Msa0605480:CDS
ATAAGAGTATAAAACTACGG+GGG 0.742499 4_2:+51404438 Msa0605480:CDS
TATAAGAGTATAAAACTACG+GGG 0.765134 4_2:+51404437 Msa0605480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTAAATATCATAGAAAAAA+AGG + chr4_2:51404007-51404026 Msa0605480:intron 15.0%
!! TCTAAATATCATAGAAAAAA+AGG + chr4_2:51404124-51404143 Msa0605480:CDS 15.0%
!! ACTAAATATCATAGAAAAAA+AGG + chr4_2:51404007-51404026 Msa0605480:intron 15.0%
!! TCTAAATATCATAGAAAAAA+AGG + chr4_2:51404124-51404143 Msa0605480:CDS 15.0%
!! AAATATCATAGAAAAAAAGG+TGG + chr4_2:51404010-51404029 Msa0605480:intron 20.0%
!! TGATGACAAGATTAATATAA+AGG + chr4_2:51404076-51404095 Msa0605480:CDS 20.0%
!! AAATATCATAGAAAAAAAGG+TGG + chr4_2:51404010-51404029 Msa0605480:intron 20.0%
!! TGATGACAAGATTAATATAA+AGG + chr4_2:51404076-51404095 Msa0605480:CDS 20.0%
!!! GTTATAAGAGTATAAAACTA+CGG + chr4_2:51404435-51404454 Msa0605480:CDS 20.0%
!!! TTATAAGAGTATAAAACTAC+GGG + chr4_2:51404436-51404455 Msa0605480:CDS 20.0%
!!! TTATAAGAGTACAAAACTAT+CGG + chr4_2:51404586-51404605 Msa0605480:CDS 20.0%
!! AAATATCATAGAAAAAAAGG+TGG + chr4_2:51404010-51404029 Msa0605480:intron 20.0%
!! TGATGACAAGATTAATATAA+AGG + chr4_2:51404076-51404095 Msa0605480:CDS 20.0%
!! AAATATCATAGAAAAAAAGG+TGG + chr4_2:51404010-51404029 Msa0605480:intron 20.0%
!! TGATGACAAGATTAATATAA+AGG + chr4_2:51404076-51404095 Msa0605480:CDS 20.0%
!!! GTTATAAGAGTATAAAACTA+CGG + chr4_2:51404435-51404454 Msa0605480:CDS 20.0%
!!! TTATAAGAGTATAAAACTAC+GGG + chr4_2:51404436-51404455 Msa0605480:CDS 20.0%
!!! TTATAAGAGTACAAAACTAT+CGG + chr4_2:51404586-51404605 Msa0605480:CDS 20.0%
!! ATATAAAAGATTTTGAGCCA+AGG + chr4_2:51404228-51404247 Msa0605480:CDS 25.0%
! ATATGACTATTAAACTACCA+AGG + chr4_2:51404363-51404382 Msa0605480:CDS 25.0%
!! TATAAGAGTATAAAACTACG+GGG + chr4_2:51404437-51404456 Msa0605480:CDS 25.0%
! TTATCAGAGTACAAAACTAT+CGG + chr4_2:51404511-51404530 Msa0605480:CDS 25.0%
!!! CTATAAGAGTATTAAACTAC+CGG + chr4_2:51404661-51404680 Msa0605480:CDS 25.0%
! TTATCAGAGTACAAAACTAT+CGG + chr4_2:51404511-51404530 Msa0605480:CDS 25.0%
!! ATATAAAAGATTTTGAGCCA+AGG + chr4_2:51404228-51404247 Msa0605480:CDS 25.0%
! ATATGACTATTAAACTACCA+AGG + chr4_2:51404363-51404382 Msa0605480:CDS 25.0%
!! TATAAGAGTATAAAACTACG+GGG + chr4_2:51404437-51404456 Msa0605480:CDS 25.0%
! TTATCAGAGTACAAAACTAT+CGG + chr4_2:51404511-51404530 Msa0605480:CDS 25.0%
!!! CTATAAGAGTATTAAACTAC+CGG + chr4_2:51404661-51404680 Msa0605480:CDS 25.0%
! TTATCAGAGTACAAAACTAT+CGG + chr4_2:51404511-51404530 Msa0605480:CDS 25.0%
! GATATTTAGTGTGTTTGTTG+CGG - chr4_2:51403997-51404016 None:intergenic 30.0%
! ATATTTAGAGTGTTTGTTGC+GGG - chr4_2:51404113-51404132 None:intergenic 30.0%
! GATATTTAGAGTGTTTGTTG+CGG - chr4_2:51404114-51404133 None:intergenic 30.0%
TTACAAAAGCGAGAAGTTAT+GGG + chr4_2:51404280-51404299 Msa0605480:CDS 30.0%
! ATAAGAGTATAAAACTACGG+GGG + chr4_2:51404438-51404457 Msa0605480:CDS 30.0%
TACTTTGTAACACTTGGTAT+GGG - chr4_2:51404554-51404573 None:intergenic 30.0%
ATACTTTGTAACACTTGGTA+TGG - chr4_2:51404555-51404574 None:intergenic 30.0%
ATACCAAGTGTTACAAAGTA+TGG + chr4_2:51404554-51404573 Msa0605480:CDS 30.0%
! TAACTTGTAACACTTGGTAT+GGG - chr4_2:51404629-51404648 None:intergenic 30.0%
! ATAACTTGTAACACTTGGTA+TGG - chr4_2:51404630-51404649 None:intergenic 30.0%
ATACCAAGTGTTACAAGTTA+TGG + chr4_2:51404629-51404648 Msa0605480:intron 30.0%
AAGTGTTACAAGTTATGGAA+GGG + chr4_2:51404634-51404653 Msa0605480:intron 30.0%
! TAACTTGTAACACTTGGTAT+GGG - chr4_2:51404629-51404648 None:intergenic 30.0%
! ATAACTTGTAACACTTGGTA+TGG - chr4_2:51404630-51404649 None:intergenic 30.0%
ATACCAAGTGTTACAAGTTA+TGG + chr4_2:51404629-51404648 Msa0605480:intron 30.0%
! GATATTTAGTGTGTTTGTTG+CGG - chr4_2:51403997-51404016 None:intergenic 30.0%
! ATATTTAGAGTGTTTGTTGC+GGG - chr4_2:51404113-51404132 None:intergenic 30.0%
! GATATTTAGAGTGTTTGTTG+CGG - chr4_2:51404114-51404133 None:intergenic 30.0%
TTACAAAAGCGAGAAGTTAT+GGG + chr4_2:51404280-51404299 Msa0605480:CDS 30.0%
! ATAAGAGTATAAAACTACGG+GGG + chr4_2:51404438-51404457 Msa0605480:CDS 30.0%
TACTTTGTAACACTTGGTAT+GGG - chr4_2:51404554-51404573 None:intergenic 30.0%
ATACTTTGTAACACTTGGTA+TGG - chr4_2:51404555-51404574 None:intergenic 30.0%
ATACCAAGTGTTACAAAGTA+TGG + chr4_2:51404554-51404573 Msa0605480:CDS 30.0%
! TAACTTGTAACACTTGGTAT+GGG - chr4_2:51404629-51404648 None:intergenic 30.0%
! ATAACTTGTAACACTTGGTA+TGG - chr4_2:51404630-51404649 None:intergenic 30.0%
ATACCAAGTGTTACAAGTTA+TGG + chr4_2:51404629-51404648 Msa0605480:intron 30.0%
AAGTGTTACAAGTTATGGAA+GGG + chr4_2:51404634-51404653 Msa0605480:intron 30.0%
! TAACTTGTAACACTTGGTAT+GGG - chr4_2:51404629-51404648 None:intergenic 30.0%
! ATAACTTGTAACACTTGGTA+TGG - chr4_2:51404630-51404649 None:intergenic 30.0%
ATACCAAGTGTTACAAGTTA+TGG + chr4_2:51404629-51404648 Msa0605480:intron 30.0%
TCACCATAAGCTGAAATTGT+GGG - chr4_2:51404059-51404078 None:intergenic 35.0%
ATCACCATAAGCTGAAATTG+TGG - chr4_2:51404060-51404079 None:intergenic 35.0%
TCACCATAAGCTGAAATTGT+GGG - chr4_2:51404059-51404078 None:intergenic 35.0%
ATCACCATAAGCTGAAATTG+TGG - chr4_2:51404060-51404079 None:intergenic 35.0%
GTTACAAAAGCGAGAAGTTA+TGG + chr4_2:51404279-51404298 Msa0605480:CDS 35.0%
AGTACAAAACTATCGGTGAA+TGG + chr4_2:51404518-51404537 Msa0605480:CDS 35.0%
! CTTCCATAACTTGTAACACT+TGG - chr4_2:51404635-51404654 None:intergenic 35.0%
CAAGTGTTACAAGTTATGGA+AGG + chr4_2:51404633-51404652 Msa0605480:intron 35.0%
! TTGCCATAACTTGTAACACT+TGG - chr4_2:51404785-51404804 None:intergenic 35.0%
GGTTCAAACTCGTCATTAAT+CGG - chr4_2:51404833-51404852 None:intergenic 35.0%
TACTTTGTAACACTTGGTCT+GGG - chr4_2:51404929-51404948 None:intergenic 35.0%
ATACTTTGTAACACTTGGTC+TGG - chr4_2:51404930-51404949 None:intergenic 35.0%
CCATCATACTTTGTAACACT+TGG - chr4_2:51404935-51404954 None:intergenic 35.0%
CCAAGTGTTACAAAGTATGA+TGG + chr4_2:51404932-51404951 Msa0605480:CDS 35.0%
TCACCATAAGCTGAAATTGT+GGG - chr4_2:51404059-51404078 None:intergenic 35.0%
ATCACCATAAGCTGAAATTG+TGG - chr4_2:51404060-51404079 None:intergenic 35.0%
TCACCATAAGCTGAAATTGT+GGG - chr4_2:51404059-51404078 None:intergenic 35.0%
ATCACCATAAGCTGAAATTG+TGG - chr4_2:51404060-51404079 None:intergenic 35.0%
GTTACAAAAGCGAGAAGTTA+TGG + chr4_2:51404279-51404298 Msa0605480:CDS 35.0%
AGTACAAAACTATCGGTGAA+TGG + chr4_2:51404518-51404537 Msa0605480:CDS 35.0%
! CTTCCATAACTTGTAACACT+TGG - chr4_2:51404635-51404654 None:intergenic 35.0%
CAAGTGTTACAAGTTATGGA+AGG + chr4_2:51404633-51404652 Msa0605480:intron 35.0%
! TTGCCATAACTTGTAACACT+TGG - chr4_2:51404785-51404804 None:intergenic 35.0%
GGTTCAAACTCGTCATTAAT+CGG - chr4_2:51404833-51404852 None:intergenic 35.0%
TACTTTGTAACACTTGGTCT+GGG - chr4_2:51404929-51404948 None:intergenic 35.0%
ATACTTTGTAACACTTGGTC+TGG - chr4_2:51404930-51404949 None:intergenic 35.0%
CCATCATACTTTGTAACACT+TGG - chr4_2:51404935-51404954 None:intergenic 35.0%
CCAAGTGTTACAAAGTATGA+TGG + chr4_2:51404932-51404951 Msa0605480:CDS 35.0%
TAAGCTGAAATTGTGGGTCT+TGG - chr4_2:51404053-51404072 None:intergenic 40.0%
AGACCCACAATTTCAGCTTA+TGG + chr4_2:51404053-51404072 Msa0605480:CDS 40.0%
TAAGCTGAAATTGTGGGTCT+TGG - chr4_2:51404053-51404072 None:intergenic 40.0%
AGACCCACAATTTCAGCTTA+TGG + chr4_2:51404053-51404072 Msa0605480:CDS 40.0%
CCAAGTGCTACAAAGTATGA+CGG + chr4_2:51404326-51404345 Msa0605480:CDS 40.0%
TACCTTGTAACACTTGGTCT+GGG - chr4_2:51404404-51404423 None:intergenic 40.0%
ATACCTTGTAACACTTGGTC+TGG - chr4_2:51404405-51404424 None:intergenic 40.0%
CCAAGTGTTACAAGGTATGA+CGG + chr4_2:51404407-51404426 Msa0605480:intron 40.0%
TACCTTGTAACACTTGGTCT+GGG - chr4_2:51404404-51404423 None:intergenic 40.0%
ATACCTTGTAACACTTGGTC+TGG - chr4_2:51404405-51404424 None:intergenic 40.0%
CCAAGTGTTACAAGGTATGA+CGG + chr4_2:51404407-51404426 Msa0605480:intron 40.0%
CTGCCATACTTTGTAACACT+TGG - chr4_2:51404560-51404579 None:intergenic 40.0%
GTTACAAAGTATGGCAGTGA+TGG + chr4_2:51404563-51404582 Msa0605480:CDS 40.0%
GTTACAAGTTATGGAAGGGA+TGG + chr4_2:51404638-51404657 Msa0605480:intron 40.0%
GGTTCAAACTCGTCATTAAC+CGG - chr4_2:51404683-51404702 None:intergenic 40.0%
TACTTTGTAGCACTTGGTCT+GGG - chr4_2:51404704-51404723 None:intergenic 40.0%
ATACTTTGTAGCACTTGGTC+TGG - chr4_2:51404705-51404724 None:intergenic 40.0%
CCATCATACTTTGTAGCACT+TGG - chr4_2:51404710-51404729 None:intergenic 40.0%
CCAAGTGCTACAAAGTATGA+TGG + chr4_2:51404326-51404345 Msa0605480:CDS 40.0%
! GCTACAAAGTATGATGGTGA+TGG + chr4_2:51404713-51404732 Msa0605480:CDS 40.0%
GTTACAAGTTATGGCAACGA+TGG + chr4_2:51404788-51404807 Msa0605480:CDS 40.0%
ATGAAACTACCGATGAACGA+CGG + chr4_2:51404896-51404915 Msa0605480:CDS 40.0%
TAAGCTGAAATTGTGGGTCT+TGG - chr4_2:51404053-51404072 None:intergenic 40.0%
AGACCCACAATTTCAGCTTA+TGG + chr4_2:51404053-51404072 Msa0605480:CDS 40.0%
TAAGCTGAAATTGTGGGTCT+TGG - chr4_2:51404053-51404072 None:intergenic 40.0%
AGACCCACAATTTCAGCTTA+TGG + chr4_2:51404053-51404072 Msa0605480:CDS 40.0%
CCAAGTGCTACAAAGTATGA+CGG + chr4_2:51404326-51404345 Msa0605480:CDS 40.0%
TACCTTGTAACACTTGGTCT+GGG - chr4_2:51404404-51404423 None:intergenic 40.0%
ATACCTTGTAACACTTGGTC+TGG - chr4_2:51404405-51404424 None:intergenic 40.0%
CCAAGTGTTACAAGGTATGA+CGG + chr4_2:51404407-51404426 Msa0605480:intron 40.0%
TACCTTGTAACACTTGGTCT+GGG - chr4_2:51404404-51404423 None:intergenic 40.0%
ATACCTTGTAACACTTGGTC+TGG - chr4_2:51404405-51404424 None:intergenic 40.0%
CCAAGTGTTACAAGGTATGA+CGG + chr4_2:51404407-51404426 Msa0605480:intron 40.0%
CTGCCATACTTTGTAACACT+TGG - chr4_2:51404560-51404579 None:intergenic 40.0%
GTTACAAAGTATGGCAGTGA+TGG + chr4_2:51404563-51404582 Msa0605480:CDS 40.0%
GTTACAAGTTATGGAAGGGA+TGG + chr4_2:51404638-51404657 Msa0605480:intron 40.0%
GGTTCAAACTCGTCATTAAC+CGG - chr4_2:51404683-51404702 None:intergenic 40.0%
TACTTTGTAGCACTTGGTCT+GGG - chr4_2:51404704-51404723 None:intergenic 40.0%
ATACTTTGTAGCACTTGGTC+TGG - chr4_2:51404705-51404724 None:intergenic 40.0%
CCATCATACTTTGTAGCACT+TGG - chr4_2:51404710-51404729 None:intergenic 40.0%
CCAAGTGCTACAAAGTATGA+TGG + chr4_2:51404326-51404345 Msa0605480:CDS 40.0%
! GCTACAAAGTATGATGGTGA+TGG + chr4_2:51404713-51404732 Msa0605480:CDS 40.0%
GTTACAAGTTATGGCAACGA+TGG + chr4_2:51404788-51404807 Msa0605480:CDS 40.0%
ATGAAACTACCGATGAACGA+CGG + chr4_2:51404896-51404915 Msa0605480:CDS 40.0%
GCACAAGAACAACTTGCCAA+AGG + chr4_2:51403954-51403973 Msa0605480:CDS 45.0%
ATGCTCATCGCACTTACCTT+TGG - chr4_2:51403973-51403992 None:intergenic 45.0%
CCATCATACCTTGTGACACT+TGG - chr4_2:51404254-51404273 None:intergenic 45.0%
CCAAGTGTCACAAGGTATGA+TGG + chr4_2:51404251-51404270 Msa0605480:CDS 45.0%
! GTCACAAGGTATGATGGTGA+TGG + chr4_2:51404257-51404276 Msa0605480:CDS 45.0%
TGTCCTCTGAGTTTGAACCT+AGG + chr4_2:51404303-51404322 Msa0605480:CDS 45.0%
TACTTTGTAGCACTTGGCCT+AGG - chr4_2:51404323-51404342 None:intergenic 45.0%
CCGTCATACTTTGTAGCACT+TGG - chr4_2:51404329-51404348 None:intergenic 45.0%
GGTTCAAACTCGTCATTCCT+TGG - chr4_2:51404383-51404402 None:intergenic 45.0%
AACCCAGACCAAGTGTTACA+AGG + chr4_2:51404399-51404418 Msa0605480:intron 45.0%
CCGTCATACCTTGTAACACT+TGG - chr4_2:51404410-51404429 None:intergenic 45.0%
GTTACAAGGTATGACGGTGA+TGG + chr4_2:51404413-51404432 Msa0605480:intron 45.0%
AACCCAGACCAAGTGTTACA+AGG + chr4_2:51404399-51404418 Msa0605480:intron 45.0%
CCGTCATACCTTGTAACACT+TGG - chr4_2:51404410-51404429 None:intergenic 45.0%
TGAAACTACCGATGAACGAC+GGG + chr4_2:51404897-51404916 Msa0605480:CDS 45.0%
AGGTTCAAACTCGTCGTTCA+CGG - chr4_2:51404984-51405003 None:intergenic 45.0%
TGAACGACGAGTTTGAACCT+AGG + chr4_2:51404984-51405003 Msa0605480:CDS 45.0%
GCACAAGAACAACTTGCCAA+AGG + chr4_2:51403954-51403973 Msa0605480:CDS 45.0%
ATGCTCATCGCACTTACCTT+TGG - chr4_2:51403973-51403992 None:intergenic 45.0%
CCATCATACCTTGTGACACT+TGG - chr4_2:51404254-51404273 None:intergenic 45.0%
CCAAGTGTCACAAGGTATGA+TGG + chr4_2:51404251-51404270 Msa0605480:CDS 45.0%
! GTCACAAGGTATGATGGTGA+TGG + chr4_2:51404257-51404276 Msa0605480:CDS 45.0%
TGTCCTCTGAGTTTGAACCT+AGG + chr4_2:51404303-51404322 Msa0605480:CDS 45.0%
TACTTTGTAGCACTTGGCCT+AGG - chr4_2:51404323-51404342 None:intergenic 45.0%
CCGTCATACTTTGTAGCACT+TGG - chr4_2:51404329-51404348 None:intergenic 45.0%
GGTTCAAACTCGTCATTCCT+TGG - chr4_2:51404383-51404402 None:intergenic 45.0%
AACCCAGACCAAGTGTTACA+AGG + chr4_2:51404399-51404418 Msa0605480:intron 45.0%
CCGTCATACCTTGTAACACT+TGG - chr4_2:51404410-51404429 None:intergenic 45.0%
GTTACAAGGTATGACGGTGA+TGG + chr4_2:51404413-51404432 Msa0605480:intron 45.0%
AACCCAGACCAAGTGTTACA+AGG + chr4_2:51404399-51404418 Msa0605480:intron 45.0%
CCGTCATACCTTGTAACACT+TGG - chr4_2:51404410-51404429 None:intergenic 45.0%
TGAAACTACCGATGAACGAC+GGG + chr4_2:51404897-51404916 Msa0605480:CDS 45.0%
AGGTTCAAACTCGTCGTTCA+CGG - chr4_2:51404984-51405003 None:intergenic 45.0%
TGAACGACGAGTTTGAACCT+AGG + chr4_2:51404984-51405003 Msa0605480:CDS 45.0%
GGCAAGTTGTTCTTGTGCCT+TGG - chr4_2:51403952-51403971 None:intergenic 50.0%
TACCTTGTGACACTTGGCCT+TGG - chr4_2:51404248-51404267 None:intergenic 50.0%
TGGCCTAGGTTCAAACTCAG+AGG - chr4_2:51404309-51404328 None:intergenic 50.0%
GCTACAAAGTATGACGGCGA+TGG + chr4_2:51404332-51404351 Msa0605480:CDS 50.0%
AAGTATGACGGCGATGGTGA+AGG + chr4_2:51404338-51404357 Msa0605480:CDS 50.0%
TACCTTGTCGCACTTGGTCT+GGG - chr4_2:51404854-51404873 None:intergenic 50.0%
ATACCTTGTCGCACTTGGTC+TGG - chr4_2:51404855-51404874 None:intergenic 50.0%
CCAAGTGCGACAAGGTATGA+CGG + chr4_2:51404857-51404876 Msa0605480:intron 50.0%
GGTTCAAACCCGTCGTTCAT+CGG - chr4_2:51404908-51404927 None:intergenic 50.0%
GGTTCAAACTCGTCGTTCAC+GGG - chr4_2:51404983-51405002 None:intergenic 50.0%
GTTGTTCTTGTGCCTTGGAG+TGG - chr4_2:51403947-51403966 None:intergenic 50.0%
GGCAAGTTGTTCTTGTGCCT+TGG - chr4_2:51403952-51403971 None:intergenic 50.0%
TACCTTGTGACACTTGGCCT+TGG - chr4_2:51404248-51404267 None:intergenic 50.0%
TGGCCTAGGTTCAAACTCAG+AGG - chr4_2:51404309-51404328 None:intergenic 50.0%
GCTACAAAGTATGACGGCGA+TGG + chr4_2:51404332-51404351 Msa0605480:CDS 50.0%
AAGTATGACGGCGATGGTGA+AGG + chr4_2:51404338-51404357 Msa0605480:CDS 50.0%
TACCTTGTCGCACTTGGTCT+GGG - chr4_2:51404854-51404873 None:intergenic 50.0%
ATACCTTGTCGCACTTGGTC+TGG - chr4_2:51404855-51404874 None:intergenic 50.0%
CCAAGTGCGACAAGGTATGA+CGG + chr4_2:51404857-51404876 Msa0605480:intron 50.0%
GGTTCAAACCCGTCGTTCAT+CGG - chr4_2:51404908-51404927 None:intergenic 50.0%
GGTTCAAACTCGTCGTTCAC+GGG - chr4_2:51404983-51405002 None:intergenic 50.0%
AGCCAAGGCCAAGTGTCACA+AGG + chr4_2:51404243-51404262 Msa0605480:CDS 55.0%
AACCCAGACCAAGTGCGACA+AGG + chr4_2:51404849-51404868 Msa0605480:CDS 55.0%
CCGTCATACCTTGTCGCACT+TGG - chr4_2:51404860-51404879 None:intergenic 55.0%
AGCCAAGGCCAAGTGTCACA+AGG + chr4_2:51404243-51404262 Msa0605480:CDS 55.0%
AACCCAGACCAAGTGCGACA+AGG + chr4_2:51404849-51404868 Msa0605480:CDS 55.0%
CCGTCATACCTTGTCGCACT+TGG - chr4_2:51404860-51404879 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 51403946 51405018 51403946 ID=Msa0605480;Name=Msa0605480
chr4_2 mRNA 51403946 51405018 51403946 ID=Msa0605480-mRNA-1;Parent=Msa0605480;Name=Msa0605480-mRNA-1;_AED=0.17;_eAED=0.21;_QI=0|0.2|0|1|0|0|6|0|289
chr4_2 exon 51403946 51403975 51403946 ID=Msa0605480-mRNA-1:exon:12294;Parent=Msa0605480-mRNA-1
chr4_2 exon 51404029 51404145 51404029 ID=Msa0605480-mRNA-1:exon:12295;Parent=Msa0605480-mRNA-1
chr4_2 exon 51404215 51404393 51404215 ID=Msa0605480-mRNA-1:exon:12296;Parent=Msa0605480-mRNA-1
chr4_2 exon 51404421 51404618 51404421 ID=Msa0605480-mRNA-1:exon:12297;Parent=Msa0605480-mRNA-1
chr4_2 exon 51404655 51404870 51404655 ID=Msa0605480-mRNA-1:exon:12298;Parent=Msa0605480-mRNA-1
chr4_2 exon 51404892 51405018 51404892 ID=Msa0605480-mRNA-1:exon:12299;Parent=Msa0605480-mRNA-1
chr4_2 CDS 51403946 51403975 51403946 ID=Msa0605480-mRNA-1:cds;Parent=Msa0605480-mRNA-1
chr4_2 CDS 51404029 51404145 51404029 ID=Msa0605480-mRNA-1:cds;Parent=Msa0605480-mRNA-1
chr4_2 CDS 51404215 51404393 51404215 ID=Msa0605480-mRNA-1:cds;Parent=Msa0605480-mRNA-1
chr4_2 CDS 51404421 51404618 51404421 ID=Msa0605480-mRNA-1:cds;Parent=Msa0605480-mRNA-1
chr4_2 CDS 51404655 51404870 51404655 ID=Msa0605480-mRNA-1:cds;Parent=Msa0605480-mRNA-1
chr4_2 CDS 51404892 51405018 51404892 ID=Msa0605480-mRNA-1:cds;Parent=Msa0605480-mRNA-1
Gene Sequence

>Msa0605480

ACTCCAAGGCACAAGAACAACTTGCCAAAGGTGGTCACAGAAGAATTTCAACCAAGACCCACAATTTCAGCTTATGGTGATGACAAGATTAATATAAAGGTAACTGAGCATCCCGCAACAAACACTCTAAATATCATAGAAAAAAAGGTAACTGAGAAACATATAAAAGATTTTGAGCCAAGGCCAAGTGTCACAAGGTATGATGGTGATGGTTACAAAAGCGAGAAGTTATGGGTGTCCTCTGAGTTTGAACCTAGGCCAAGTGCTACAAAGTATGACGGCGATGGTGAAGGTTATATGACTATTAAACTACCAAGGAATGACGAGTATGACGGTGATGGTTATAAGAGTATAAAACTACGGGGGAATGATGAGTTTGAACCCAGACCAAGTGTTACAAGGTATGACGGTGACGATTATCAGAGTACAAAACTATCGGTGAATAATGATTTTGAACCCATACCAAGTGTTACAAAGTATGGCAGTGATGGTTATAAGAGTACAAAACTATCGGTGAATGGTGAGGATGGCTATAAGAGTATTAAACTACCGGTTAATGACGAGTTTGAACCCAGACCAAGTGCTACAAAGTATGATGGTGATGGTTATCAGAGTACAAAACTATCGGTGAATAGTGAGTTTGAACCCATACCAAGTGTTACAAGTTATGGCAACGATGGCTATAAGAGTATGAAACTACCGATTAATGACGAGTTTGAACCCAGACCAAGTGCGACAAGAAAAATGAAACTACCGATGAACGACGGGTTTGAACCCAGACCAAGTGTTACAAAGTATGATGGTGATAATAACAAAAGCAAGAAGCTACCCGTGAACGACGAGTTTGAACCTAGGCCAAGTGCCACC

Protein sequence

>Msa0605480

TPRHKNNLPKVVTEEFQPRPTISAYGDDKINIKVTEHPATNTLNIIEKKVTEKHIKDFEPRPSVTRYDGDGYKSEKLWVSSEFEPRPSATKYDGDGEGYMTIKLPRNDEYDGDGYKSIKLRGNDEFEPRPSVTRYDGDDYQSTKLSVNNDFEPIPSVTKYGSDGYKSTKLSVNGEDGYKSIKLPVNDEFEPRPSATKYDGDGYQSTKLSVNSEFEPIPSVTSYGNDGYKSMKLPINDEFEPRPSATRKMKLPMNDGFEPRPSVTKYDGDNNKSKKLPVNDEFEPRPSAT