Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0922720 | XP_039683832.1 | 81.690 | 284 | 23 | 2 | 1 | 255 | 1 | 284 | 3.85e-160 | 470 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017070 | Msa0922720 | 0.800766 | 1.235358e-48 | -8.615850e-47 |
| Msa0017510 | Msa0922720 | 0.821062 | 4.930710e-53 | -8.615850e-47 |
| Msa0112750 | Msa0922720 | 0.811757 | 5.969152e-51 | -8.615850e-47 |
| Msa0627410 | Msa0922720 | 0.816924 | 4.302064e-52 | -8.615850e-47 |
| Msa0657970 | Msa0922720 | 0.817550 | 3.111393e-52 | -8.615850e-47 |
| Msa0661870 | Msa0922720 | 0.808263 | 3.375538e-50 | -8.615850e-47 |
| Msa0678930 | Msa0922720 | 0.843255 | 1.567754e-58 | -8.615850e-47 |
| Msa0697060 | Msa0922720 | 0.819425 | 1.169328e-52 | -8.615850e-47 |
| Msa0726140 | Msa0922720 | 0.826748 | 2.288204e-54 | -8.615850e-47 |
| Msa0741570 | Msa0922720 | 0.802290 | 6.019289e-49 | -8.615850e-47 |
| Msa0745060 | Msa0922720 | 0.816135 | 6.462713e-52 | -8.615850e-47 |
| Msa0759410 | Msa0922720 | 0.806103 | 9.676871e-50 | -8.615850e-47 |
| Msa0766630 | Msa0922720 | 0.831205 | 1.905040e-55 | -8.615850e-47 |
| Msa0793640 | Msa0922720 | 0.814216 | 1.724541e-51 | -8.615850e-47 |
| Msa0806090 | Msa0922720 | 0.805037 | 1.619478e-49 | -8.615850e-47 |
| Msa0811080 | Msa0922720 | 0.808458 | 3.067452e-50 | -8.615850e-47 |
| Msa0822870 | Msa0922720 | 0.805680 | 1.187574e-49 | -8.615850e-47 |
| Msa0825860 | Msa0922720 | 0.814295 | 1.656678e-51 | -8.615850e-47 |
| Msa0142220 | Msa0922720 | 0.821194 | 4.596063e-53 | -8.615850e-47 |
| Msa0153910 | Msa0922720 | 0.808078 | 3.695430e-50 | -8.615850e-47 |
| Msa0157290 | Msa0922720 | 0.820226 | 7.670277e-53 | -8.615850e-47 |
| Msa0165550 | Msa0922720 | 0.810816 | 9.548492e-51 | -8.615850e-47 |
| Msa0199240 | Msa0922720 | 0.808366 | 3.208675e-50 | -8.615850e-47 |
| Msa0231000 | Msa0922720 | 0.808582 | 2.885292e-50 | -8.615850e-47 |
| Msa0233300 | Msa0922720 | 0.813235 | 2.835795e-51 | -8.615850e-47 |
| Msa0235140 | Msa0922720 | 0.802335 | 5.889884e-49 | -8.615850e-47 |
| Msa0365500 | Msa0922720 | 0.815834 | 7.546168e-52 | -8.615850e-47 |
| Msa0366580 | Msa0922720 | 0.806127 | 9.565960e-50 | -8.615850e-47 |
| Msa0371730 | Msa0922720 | 0.803421 | 3.513872e-49 | -8.615850e-47 |
| Msa0384800 | Msa0922720 | 0.803840 | 2.877267e-49 | -8.615850e-47 |
| Msa0402290 | Msa0922720 | 0.811710 | 6.109330e-51 | -8.615850e-47 |
| Msa0406120 | Msa0922720 | 0.823440 | 1.383659e-53 | -8.615850e-47 |
| Msa0431690 | Msa0922720 | 0.819881 | 9.201502e-53 | -8.615850e-47 |
| Msa0437990 | Msa0922720 | 0.817179 | 3.770916e-52 | -8.615850e-47 |
| Msa0452620 | Msa0922720 | 0.818546 | 1.852774e-52 | -8.615850e-47 |
| Msa0453120 | Msa0922720 | 0.815554 | 8.708881e-52 | -8.615850e-47 |
| Msa0456200 | Msa0922720 | 0.822360 | 2.469785e-53 | -8.615850e-47 |
| Msa0270520 | Msa0922720 | 0.811324 | 7.411241e-51 | -8.615850e-47 |
| Msa0309020 | Msa0922720 | 0.805119 | 1.556956e-49 | -8.615850e-47 |
| Msa0313760 | Msa0922720 | 0.811414 | 7.084320e-51 | -8.615850e-47 |
| Msa0326200 | Msa0922720 | 0.820568 | 6.404226e-53 | -8.615850e-47 |
| Msa0353190 | Msa0922720 | 0.815332 | 9.761223e-52 | -8.615850e-47 |
| Msa0355220 | Msa0922720 | 0.803327 | 3.675137e-49 | -8.615850e-47 |
| Msa0357340 | Msa0922720 | 0.802675 | 5.012562e-49 | -8.615850e-47 |
| Msa0360510 | Msa0922720 | 0.807271 | 5.485059e-50 | -8.615850e-47 |
| Msa0483650 | Msa0922720 | 0.820729 | 5.879293e-53 | -8.615850e-47 |
| Msa0484780 | Msa0922720 | 0.804884 | 1.743551e-49 | -8.615850e-47 |
| Msa0512900 | Msa0922720 | 0.834887 | 2.310865e-56 | -8.615850e-47 |
| Msa0537500 | Msa0922720 | 0.804412 | 2.187537e-49 | -8.615850e-47 |
| Msa0846330 | Msa0922720 | 0.803810 | 2.918582e-49 | -8.615850e-47 |
| Msa0846350 | Msa0922720 | 0.805238 | 1.470102e-49 | -8.615850e-47 |
| Msa0880140 | Msa0922720 | 0.817343 | 3.464481e-52 | -8.615850e-47 |
| Msa0880340 | Msa0922720 | 0.808123 | 3.615249e-50 | -8.615850e-47 |
| Msa0885280 | Msa0922720 | 0.852770 | 3.712355e-61 | -8.615850e-47 |
| Msa0885290 | Msa0922720 | 0.839787 | 1.285982e-57 | -8.615850e-47 |
| Msa0887990 | Msa0922720 | 0.826853 | 2.159993e-54 | -8.615850e-47 |
| Msa0907070 | Msa0922720 | 0.801439 | 8.997709e-49 | -8.615850e-47 |
| Msa0909120 | Msa0922720 | 0.812088 | 5.055260e-51 | -8.615850e-47 |
| Msa0922720 | Msa0935910 | 0.814568 | 1.442208e-51 | -8.615850e-47 |
| Msa0922720 | Msa0954910 | 0.827667 | 1.378731e-54 | -8.615850e-47 |
| Msa0922720 | Msa0964220 | 0.824921 | 6.210775e-54 | -8.615850e-47 |
| Msa0922720 | Msa0965750 | 0.809757 | 1.615626e-50 | -8.615850e-47 |
| Msa0922720 | Msa0969260 | 0.802689 | 4.978769e-49 | -8.615850e-47 |
| Msa0922720 | Msa0969450 | 0.809555 | 1.785475e-50 | -8.615850e-47 |
| Msa0922720 | Msa0975220 | 0.805347 | 1.394589e-49 | -8.615850e-47 |
| Msa0922720 | Msa0981370 | 0.811977 | 5.345419e-51 | -8.615850e-47 |
| Msa0922720 | Msa0998690 | 0.808150 | 3.567728e-50 | -8.615850e-47 |
| Msa0922720 | Msa1014540 | 0.820774 | 5.743106e-53 | -8.615850e-47 |
| Msa0922720 | Msa1024240 | 0.825215 | 5.293864e-54 | -8.615850e-47 |
| Msa0922720 | Msa1079180 | 0.807522 | 4.851633e-50 | -8.615850e-47 |
| Msa0922720 | Msa1082500 | 0.807928 | 3.977271e-50 | -8.615850e-47 |
| Msa0922720 | Msa1084240 | 0.815443 | 9.221041e-52 | -8.615850e-47 |
| Msa0922720 | Msa1085390 | 0.826935 | 2.064388e-54 | -8.615850e-47 |
| Msa0922720 | Msa1092990 | 0.805911 | 1.061966e-49 | -8.615850e-47 |
| Msa0922720 | Msa1136090 | 0.836062 | 1.165903e-56 | -8.615850e-47 |
| Msa0922720 | Msa1160670 | 0.851619 | 7.887622e-61 | -8.615850e-47 |
| Msa0922720 | Msa1160690 | 0.807350 | 5.276786e-50 | -8.615850e-47 |
| Msa0922720 | Msa1169000 | 0.802405 | 5.699923e-49 | -8.615850e-47 |
| Msa0922720 | Msa1178720 | 0.804618 | 1.980887e-49 | -8.615850e-47 |
| Msa0922720 | Msa1187940 | 0.834074 | 3.697697e-56 | -8.615850e-47 |
| Msa0922720 | Msa1187950 | 0.823637 | 1.244200e-53 | -8.615850e-47 |
| Msa0922720 | Msa1249490 | 0.801559 | 8.503323e-49 | -8.615850e-47 |
| Msa0922720 | Msa1253000 | 0.802661 | 5.045410e-49 | -8.615850e-47 |
| Msa0922720 | Msa1260100 | 0.813559 | 2.407856e-51 | -8.615850e-47 |
| Msa0922720 | Msa1269670 | 0.820252 | 7.567445e-53 | -8.615850e-47 |
| Msa0922720 | Msa1270230 | 0.802709 | 4.932901e-49 | -8.615850e-47 |
| Msa0922720 | Msa1270240 | 0.803792 | 2.943950e-49 | -8.615850e-47 |
| Msa0922720 | Msa1285930 | 0.818142 | 2.287024e-52 | -8.615850e-47 |
| Msa0922720 | Msa1297210 | 0.806446 | 8.192692e-50 | -8.615850e-47 |
| Msa0922720 | Msa1307890 | 0.808792 | 2.601686e-50 | -8.615850e-47 |
| Msa0922720 | Msa1372760 | 0.804868 | 1.756739e-49 | -8.615850e-47 |
| Msa0922720 | Msa1397610 | 0.818789 | 1.631490e-52 | -8.615850e-47 |
| Msa0922720 | Msa1397860 | 0.807974 | 3.889744e-50 | -8.615850e-47 |
| Msa0922720 | Msa1411020 | 0.800901 | 1.159762e-48 | -8.615850e-47 |
| Msa0922720 | Msa1424290 | 0.808909 | 2.456490e-50 | -8.615850e-47 |
| Msa0922720 | Msa1433120 | 0.810673 | 1.025225e-50 | -8.615850e-47 |
| Msa0922720 | Msa1438250 | 0.849675 | 2.777300e-60 | -8.615850e-47 |
| Msa0922720 | Msa1451570 | 0.808167 | 3.536890e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0922720 | MtrunA17_Chr2g0302181 | 66.667 | 138 | 37 | 2 | 1 | 130 | 1 | 137 | 9.58e-62 | 195 |
| Msa0922720 | MtrunA17_Chr5g0434431 | 89.583 | 96 | 10 | 0 | 292 | 387 | 55 | 150 | 4.44e-56 | 182 |
| Msa0922720 | MtrunA17_Chr6g0469071 | 89.583 | 96 | 10 | 0 | 292 | 387 | 497 | 592 | 8.03e-53 | 186 |
| Msa0922720 | MtrunA17_Chr1g0174011 | 91.667 | 72 | 6 | 0 | 316 | 387 | 1 | 72 | 1.32e-40 | 139 |
| Msa0922720 | MtrunA17_Chr3g0097741 | 32.390 | 318 | 146 | 10 | 1 | 255 | 1 | 312 | 1.83e-37 | 144 |
| Msa0922720 | MtrunA17_Chr1g0153911 | 93.750 | 64 | 4 | 0 | 324 | 387 | 1 | 64 | 1.52e-35 | 125 |
| Msa0922720 | MtrunA17_Chr3g0081411 | 64.557 | 79 | 28 | 0 | 1 | 79 | 1 | 79 | 3.48e-35 | 125 |
| Msa0922720 | MtrunA17_Chr5g0415911 | 29.333 | 300 | 164 | 7 | 1 | 255 | 1 | 297 | 2.62e-32 | 127 |
| Msa0922720 | MtrunA17_Chr8g0393091 | 29.221 | 308 | 163 | 8 | 1 | 255 | 1 | 306 | 1.11e-27 | 115 |
| Msa0922720 | MtrunA17_Chr7g0242031 | 31.179 | 263 | 115 | 7 | 55 | 255 | 2 | 260 | 1.77e-26 | 110 |
| Msa0922720 | MtrunA17_Chr2g0309001 | 27.157 | 313 | 159 | 10 | 1 | 255 | 3 | 304 | 2.06e-23 | 101 |
| Msa0922720 | MtrunA17_Chr7g0226101 | 34.054 | 185 | 84 | 4 | 104 | 255 | 28 | 207 | 4.94e-22 | 98.2 |
| Msa0922720 | MtrunA17_Chr2g0325841 | 41.489 | 94 | 54 | 1 | 292 | 384 | 1076 | 1169 | 1.65e-17 | 85.1 |
| Msa0922720 | MtrunA17_Chr2g0314741 | 25.397 | 315 | 165 | 11 | 3 | 255 | 7 | 313 | 2.63e-15 | 76.6 |
| Msa0922720 | MtrunA17_Chr8g0371111 | 30.496 | 141 | 85 | 4 | 1 | 129 | 12 | 151 | 1.49e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 86 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCGAAAGTGTTTGGGATTT+TGG | 0.107550 | 6_2:-62010762 | Msa0922720:CDS |
| CTCTTGAACCTTGAAATTAT+TGG | 0.218440 | 6_2:+62011153 | None:intergenic |
| TTGCCATTAGGTTGCTTTCT+TGG | 0.248489 | 6_2:+62010097 | None:intergenic |
| CCACACTAACGTTCTCTCTT+TGG | 0.263241 | 6_2:+62011639 | None:intergenic |
| CTAAGGTTCTTTGCGTCCTT+TGG | 0.273398 | 6_2:+62011117 | None:intergenic |
| ACATTACTAAGGAAGAAATA+AGG | 0.292816 | 6_2:-62011742 | Msa0922720:CDS |
| ATTTCTTCCTTAGTAATGTT+TGG | 0.295917 | 6_2:+62011746 | None:intergenic |
| TCTCATCTGCATGCCATCTA+AGG | 0.305179 | 6_2:+62011100 | None:intergenic |
| AGAAATAGATCGAAAGTGTT+TGG | 0.315223 | 6_2:-62010770 | Msa0922720:CDS |
| TTTAAAATTGTTTAATTTGA+AGG | 0.317138 | 6_2:-62011474 | Msa0922720:CDS |
| TCATTGCTTCATTAAGATCT+TGG | 0.330442 | 6_2:+62010471 | None:intergenic |
| AAATAAGGGGCCATCTAGTT+TGG | 0.331037 | 6_2:-62011727 | Msa0922720:CDS |
| TGGTTAACACAGAGCTTTAG+AGG | 0.331097 | 6_2:-62010280 | Msa0922720:intron |
| AGAGAACGTTAGTGTGGATA+TGG | 0.336573 | 6_2:-62011633 | Msa0922720:CDS |
| CACACTAACGTTCTCTCTTT+GGG | 0.342855 | 6_2:+62011640 | None:intergenic |
| TTAAGTGAAGAGTTTGATAA+TGG | 0.345649 | 6_2:-62011860 | Msa0922720:CDS |
| ATCGGCATTGTGTTACCTTC+TGG | 0.355562 | 6_2:+62011389 | None:intergenic |
| GTCCTCCTGCCAAAGTGTTT+TGG | 0.359045 | 6_2:-62011182 | Msa0922720:CDS |
| GCAATAGAAAGAAGGCAAAA+TGG | 0.368092 | 6_2:-62010239 | Msa0922720:CDS |
| AAACTTATACACAATGGATA+TGG | 0.372819 | 6_2:-62011691 | Msa0922720:CDS |
| CATTACTAAGGAAGAAATAA+GGG | 0.377984 | 6_2:-62011741 | Msa0922720:CDS |
| GAAATAGATCGAAAGTGTTT+GGG | 0.378893 | 6_2:-62010769 | Msa0922720:CDS |
| CTTGTGTTTCTTGTGCGAAC+CGG | 0.379383 | 6_2:-62011772 | Msa0922720:CDS |
| GGGAAAAGTCCATCATTGTT+TGG | 0.385183 | 6_2:+62011800 | None:intergenic |
| GAAGACATGATACACGATAT+TGG | 0.389363 | 6_2:-62011599 | Msa0922720:CDS |
| AGAGGTTCATCAACTTGCTC+AGG | 0.406730 | 6_2:-62010262 | Msa0922720:CDS |
| GACAACTAAACTATTGTCCT+TGG | 0.409668 | 6_2:+62010508 | None:intergenic |
| TATCCACAATCATTGCCATT+AGG | 0.411955 | 6_2:+62010085 | None:intergenic |
| CCTTAGTAATGTTTGGCTCC+CGG | 0.428609 | 6_2:+62011753 | None:intergenic |
| AAAGTTTCACTGAATTGCTT+CGG | 0.438478 | 6_2:-62011430 | Msa0922720:CDS |
| TTGTGTTTCTTGTGCGAACC+GGG | 0.448421 | 6_2:-62011771 | Msa0922720:CDS |
| GGGGCCATCTAGTTTGGAAC+GGG | 0.449584 | 6_2:-62011721 | Msa0922720:CDS |
| AGGACGCAAAGAACCTTAGA+TGG | 0.452145 | 6_2:-62011113 | Msa0922720:CDS |
| GGTACCTACCAATAATTTCA+AGG | 0.458293 | 6_2:-62011161 | Msa0922720:CDS |
| AAATCCCGTTCCAAACTAGA+TGG | 0.460292 | 6_2:+62011717 | None:intergenic |
| CGTGTAAACTTTGTGCATCC+CGG | 0.471141 | 6_2:+62011509 | None:intergenic |
| CTGCTAATATTACTAAGTCT+TGG | 0.472781 | 6_2:-62010030 | Msa0922720:CDS |
| CAAAATCTTCCAAACAATGA+TGG | 0.487596 | 6_2:-62011809 | Msa0922720:CDS |
| TAGCTGATTCGCCATGTTGT+TGG | 0.488661 | 6_2:-62011050 | Msa0922720:CDS |
| TGTTGTTGGTGGGTAATGCT+TGG | 0.495191 | 6_2:-62011036 | Msa0922720:CDS |
| TAGCCAAGAAAGCAACCTAA+TGG | 0.495668 | 6_2:-62010100 | Msa0922720:CDS |
| AGTGATGATGCAAGCACAAA+GGG | 0.495949 | 6_2:-62011204 | Msa0922720:CDS |
| CAACCTAATGGCAATGATTG+TGG | 0.497368 | 6_2:-62010088 | Msa0922720:CDS |
| CTGATTCGCCATGTTGTTGG+TGG | 0.506744 | 6_2:-62011047 | Msa0922720:CDS |
| GTTAATAATTATTTGTCCCA+AGG | 0.509187 | 6_2:-62010525 | Msa0922720:CDS |
| AGGTACCAAAACACTTTGGC+AGG | 0.510687 | 6_2:+62011177 | None:intergenic |
| TGATTATGATGTGGCTGAGA+TGG | 0.511348 | 6_2:-62009638 | Msa0922720:CDS |
| GTGTAAACTTTGTGCATCCC+GGG | 0.513344 | 6_2:+62011510 | None:intergenic |
| ACAACTAAACTATTGTCCTT+GGG | 0.519949 | 6_2:+62010509 | None:intergenic |
| CAAGGAAGAACCTTTGTACC+CGG | 0.540877 | 6_2:-62011528 | Msa0922720:CDS |
| CCGGGAGCCAAACATTACTA+AGG | 0.544058 | 6_2:-62011753 | Msa0922720:CDS |
| GCGTCATTATGGATCGTAGT+TGG | 0.549424 | 6_2:-62011898 | None:intergenic |
| GATTATGATGTGGCTGAGAT+GGG | 0.550556 | 6_2:-62009637 | Msa0922720:CDS |
| GAGGTTCATCAACTTGCTCA+GGG | 0.558482 | 6_2:-62010261 | Msa0922720:CDS |
| TGCTCAGGGCAATAGAAAGA+AGG | 0.563067 | 6_2:-62010247 | Msa0922720:CDS |
| TGAACCTTGAAATTATTGGT+AGG | 0.563554 | 6_2:+62011157 | None:intergenic |
| TTCTCTCTTTGGGATACACT+TGG | 0.569445 | 6_2:+62011650 | None:intergenic |
| TGTGGATATGGATGATCGAC+TGG | 0.569517 | 6_2:-62011621 | Msa0922720:CDS |
| CTCATCTCAGTCGTAAGCAT+CGG | 0.575955 | 6_2:+62009608 | None:intergenic |
| TCTACGTGTGCAGAGGACAT+TGG | 0.576905 | 6_2:-62010550 | Msa0922720:intron |
| TTTGGCCTCGTAATAACGAT+CGG | 0.577543 | 6_2:+62011371 | None:intergenic |
| AACATGGCGAATCAGCTACA+TGG | 0.578467 | 6_2:+62011055 | None:intergenic |
| TTTGTGCATCCCGGGTACAA+AGG | 0.591233 | 6_2:+62011518 | None:intergenic |
| GAGATTGTTCTCTAATCCAA+AGG | 0.603953 | 6_2:-62011133 | Msa0922720:CDS |
| TAATATTACTAAGTCTTGGA+TGG | 0.604101 | 6_2:-62010026 | Msa0922720:CDS |
| GATCTTGGTGCATTGAACAA+AGG | 0.604500 | 6_2:+62010486 | None:intergenic |
| TTTGTCAAACTTATACACAA+TGG | 0.605221 | 6_2:-62011697 | Msa0922720:CDS |
| AGGGGCCATCTAGTTTGGAA+CGG | 0.605465 | 6_2:-62011722 | Msa0922720:CDS |
| TTGACAGAAATGCTTCCAGA+AGG | 0.605790 | 6_2:-62011404 | Msa0922720:CDS |
| TGGTAGGTACCAAAACACTT+TGG | 0.610887 | 6_2:+62011173 | None:intergenic |
| CACAAGAAACACAAGGACAT+GGG | 0.612129 | 6_2:+62011780 | None:intergenic |
| GCAGATGAGAGAAAACGTGA+TGG | 0.617423 | 6_2:-62011087 | Msa0922720:CDS |
| GCACAAGAAACACAAGGACA+TGG | 0.619402 | 6_2:+62011779 | None:intergenic |
| TACCAAAACACTTTGGCAGG+AGG | 0.620651 | 6_2:+62011180 | None:intergenic |
| CCAAAGAGAGAACGTTAGTG+TGG | 0.628120 | 6_2:-62011639 | Msa0922720:CDS |
| TGAAGAGTTTGATAATGGAG+TGG | 0.628335 | 6_2:-62011855 | Msa0922720:CDS |
| TAGTGATGATGCAAGCACAA+AGG | 0.631121 | 6_2:-62011205 | Msa0922720:CDS |
| CGGTTCGCACAAGAAACACA+AGG | 0.631501 | 6_2:+62011773 | None:intergenic |
| TGATTCGCCATGTTGTTGGT+GGG | 0.635308 | 6_2:-62011046 | Msa0922720:CDS |
| ATTACTAAGGAAGAAATAAG+GGG | 0.638693 | 6_2:-62011740 | Msa0922720:CDS |
| AGCATTACCCACCAACAACA+TGG | 0.640132 | 6_2:+62011039 | None:intergenic |
| TATTACTAAGTCTTGGATGG+AGG | 0.643493 | 6_2:-62010023 | Msa0922720:intron |
| TATACACAATGGATATGGCA+CGG | 0.644909 | 6_2:-62011686 | Msa0922720:CDS |
| AAGGAAGAACCTTTGTACCC+GGG | 0.661208 | 6_2:-62011527 | Msa0922720:CDS |
| CAATGCCGATCGTTATTACG+AGG | 0.686727 | 6_2:-62011376 | Msa0922720:CDS |
| GATGAAAACTGATTATGATG+TGG | 0.703535 | 6_2:-62009647 | Msa0922720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAAATTGTTTAATTTGA+AGG | - | chr6_2:62010025-62010044 | Msa0922720:CDS | 10.0% |
| !!! | TTGATGATTTTTTTTTAATT+TGG | - | chr6_2:62011129-62011148 | Msa0922720:CDS | 10.0% |
| !!! | TTTAAAATTGTTTAATTTGA+AGG | - | chr6_2:62010025-62010044 | Msa0922720:CDS | 10.0% |
| !!! | TTGATGATTTTTTTTTAATT+TGG | - | chr6_2:62011129-62011148 | Msa0922720:CDS | 10.0% |
| !!! | CTTTTTTACTATTATCAATA+TGG | - | chr6_2:62010531-62010550 | Msa0922720:CDS | 15.0% |
| !!! | TGTTAATTTTAAATTTGTCT+AGG | - | chr6_2:62010586-62010605 | Msa0922720:intron | 15.0% |
| !!! | TGTTAATTTTAAATTTGTCT+AGG | - | chr6_2:62010586-62010605 | Msa0922720:intron | 15.0% |
| !! | TATACTTACTTAAATAGATA+TGG | + | chr6_2:62010870-62010889 | None:intergenic | 15.0% |
| !!! | CTTTGATGATTTTTTTAATT+TGG | - | chr6_2:62011199-62011218 | Msa0922720:CDS | 15.0% |
| !! | AACTAATCACTATATAAAAA+TGG | - | chr6_2:62011365-62011384 | Msa0922720:CDS | 15.0% |
| !!! | ATAACTTTTTCAATTGATTT+TGG | - | chr6_2:62011821-62011840 | Msa0922720:CDS | 15.0% |
| !!! | CTTTTTTACTATTATCAATA+TGG | - | chr6_2:62010531-62010550 | Msa0922720:CDS | 15.0% |
| !!! | TGTTAATTTTAAATTTGTCT+AGG | - | chr6_2:62010586-62010605 | Msa0922720:intron | 15.0% |
| !!! | TGTTAATTTTAAATTTGTCT+AGG | - | chr6_2:62010586-62010605 | Msa0922720:intron | 15.0% |
| !! | TATACTTACTTAAATAGATA+TGG | + | chr6_2:62010870-62010889 | None:intergenic | 15.0% |
| !!! | CTTTGATGATTTTTTTAATT+TGG | - | chr6_2:62011199-62011218 | Msa0922720:CDS | 15.0% |
| !! | AACTAATCACTATATAAAAA+TGG | - | chr6_2:62011365-62011384 | Msa0922720:CDS | 15.0% |
| !!! | ATAACTTTTTCAATTGATTT+TGG | - | chr6_2:62011821-62011840 | Msa0922720:CDS | 15.0% |
| !!! | TTTAATTTGAAGGCAAAAAA+TGG | - | chr6_2:62010035-62010054 | Msa0922720:CDS | 20.0% |
| !! | AACACTTAAATATTGAATTG+TGG | + | chr6_2:62010570-62010589 | None:intergenic | 20.0% |
| !! | ATCGAATACTATTATCAATA+TGG | - | chr6_2:62010627-62010646 | Msa0922720:intron | 20.0% |
| !! | AACACTTAAATATTGAATTG+TGG | + | chr6_2:62010570-62010589 | None:intergenic | 20.0% |
| !!! | TTTAATTTGAAGGCAAAAAA+TGG | - | chr6_2:62010035-62010054 | Msa0922720:CDS | 20.0% |
| !! | AACACTTAAATATTGAATTG+TGG | + | chr6_2:62010570-62010589 | None:intergenic | 20.0% |
| !! | ATCGAATACTATTATCAATA+TGG | - | chr6_2:62010627-62010646 | Msa0922720:intron | 20.0% |
| !! | AACACTTAAATATTGAATTG+TGG | + | chr6_2:62010570-62010589 | None:intergenic | 20.0% |
| ! | TTAAGTGAAGAGTTTGATAA+TGG | - | chr6_2:62009639-62009658 | Msa0922720:CDS | 25.0% |
| ! | ATTTCTTCCTTAGTAATGTT+TGG | + | chr6_2:62009756-62009775 | None:intergenic | 25.0% |
| ! | ACATTACTAAGGAAGAAATA+AGG | - | chr6_2:62009757-62009776 | Msa0922720:intron | 25.0% |
| ! | CATTACTAAGGAAGAAATAA+GGG | - | chr6_2:62009758-62009777 | Msa0922720:intron | 25.0% |
| ! | ATTACTAAGGAAGAAATAAG+GGG | - | chr6_2:62009759-62009778 | Msa0922720:intron | 25.0% |
| ! | TTTGTCAAACTTATACACAA+TGG | - | chr6_2:62009802-62009821 | Msa0922720:intron | 25.0% |
| ! | AAACTTATACACAATGGATA+TGG | - | chr6_2:62009808-62009827 | Msa0922720:intron | 25.0% |
| ! | CGATACTTTATGTAAAAACA+AGG | - | chr6_2:62009953-62009972 | Msa0922720:intron | 25.0% |
| ! | AAAAAAATATTGTGTCCGAT+GGG | - | chr6_2:62010148-62010167 | Msa0922720:intron | 25.0% |
| ! | TATATAAGATGCAGTCATTA+GGG | + | chr6_2:62010201-62010220 | None:intergenic | 25.0% |
| !! | ACTTTTCTATTCTACAACTT+TGG | - | chr6_2:62010490-62010509 | Msa0922720:CDS | 25.0% |
| !!! | GTTTTAGTACTATGATCTTT+TGG | + | chr6_2:62010786-62010805 | None:intergenic | 25.0% |
| ! | TAGTACTAAAACTAAAGTTC+AGG | - | chr6_2:62010794-62010813 | Msa0922720:CDS | 25.0% |
| ! | ACGTAGAAGAACAATTATTA+AGG | + | chr6_2:62010936-62010955 | None:intergenic | 25.0% |
| ! | GTTAATAATTATTTGTCCCA+AGG | - | chr6_2:62010974-62010993 | Msa0922720:intron | 25.0% |
| !!! | GTTATACATTTTAGTGTTGT+AGG | + | chr6_2:62011108-62011127 | None:intergenic | 25.0% |
| ! | TAATATTACTAAGTCTTGGA+TGG | - | chr6_2:62011473-62011492 | Msa0922720:CDS | 25.0% |
| ! | TTTATTAACCTACACATTGT+AGG | - | chr6_2:62011576-62011595 | Msa0922720:CDS | 25.0% |
| !! | ACAAATGTCAAATTTGAGAT+TGG | + | chr6_2:62011717-62011736 | None:intergenic | 25.0% |
| ! | TTAAGTGAAGAGTTTGATAA+TGG | - | chr6_2:62009639-62009658 | Msa0922720:CDS | 25.0% |
| ! | ATTTCTTCCTTAGTAATGTT+TGG | + | chr6_2:62009756-62009775 | None:intergenic | 25.0% |
| ! | ACATTACTAAGGAAGAAATA+AGG | - | chr6_2:62009757-62009776 | Msa0922720:intron | 25.0% |
| ! | CATTACTAAGGAAGAAATAA+GGG | - | chr6_2:62009758-62009777 | Msa0922720:intron | 25.0% |
| ! | ATTACTAAGGAAGAAATAAG+GGG | - | chr6_2:62009759-62009778 | Msa0922720:intron | 25.0% |
| ! | TTTGTCAAACTTATACACAA+TGG | - | chr6_2:62009802-62009821 | Msa0922720:intron | 25.0% |
| ! | AAACTTATACACAATGGATA+TGG | - | chr6_2:62009808-62009827 | Msa0922720:intron | 25.0% |
| ! | CGATACTTTATGTAAAAACA+AGG | - | chr6_2:62009953-62009972 | Msa0922720:intron | 25.0% |
| ! | AAAAAAATATTGTGTCCGAT+GGG | - | chr6_2:62010148-62010167 | Msa0922720:intron | 25.0% |
| ! | TATATAAGATGCAGTCATTA+GGG | + | chr6_2:62010201-62010220 | None:intergenic | 25.0% |
| !! | ACTTTTCTATTCTACAACTT+TGG | - | chr6_2:62010490-62010509 | Msa0922720:CDS | 25.0% |
| !!! | GTTTTAGTACTATGATCTTT+TGG | + | chr6_2:62010786-62010805 | None:intergenic | 25.0% |
| ! | TAGTACTAAAACTAAAGTTC+AGG | - | chr6_2:62010794-62010813 | Msa0922720:CDS | 25.0% |
| ! | ACGTAGAAGAACAATTATTA+AGG | + | chr6_2:62010936-62010955 | None:intergenic | 25.0% |
| ! | GTTAATAATTATTTGTCCCA+AGG | - | chr6_2:62010974-62010993 | Msa0922720:intron | 25.0% |
| !!! | GTTATACATTTTAGTGTTGT+AGG | + | chr6_2:62011108-62011127 | None:intergenic | 25.0% |
| ! | TAATATTACTAAGTCTTGGA+TGG | - | chr6_2:62011473-62011492 | Msa0922720:CDS | 25.0% |
| ! | TTTATTAACCTACACATTGT+AGG | - | chr6_2:62011576-62011595 | Msa0922720:CDS | 25.0% |
| !! | ACAAATGTCAAATTTGAGAT+TGG | + | chr6_2:62011717-62011736 | None:intergenic | 25.0% |
| CAAAATCTTCCAAACAATGA+TGG | - | chr6_2:62009690-62009709 | Msa0922720:intron | 30.0% | |
| ATTTGAAGGCAAAAAATGGA+TGG | - | chr6_2:62010039-62010058 | Msa0922720:CDS | 30.0% | |
| AAAGTTTCACTGAATTGCTT+CGG | - | chr6_2:62010069-62010088 | Msa0922720:CDS | 30.0% | |
| !!! | CATCGGACACAATATTTTTT+TGG | + | chr6_2:62010149-62010168 | None:intergenic | 30.0% |
| CAAAAAAATATTGTGTCCGA+TGG | - | chr6_2:62010147-62010166 | Msa0922720:intron | 30.0% | |
| CTATATAAGATGCAGTCATT+AGG | + | chr6_2:62010202-62010221 | None:intergenic | 30.0% | |
| TGAACCTTGAAATTATTGGT+AGG | + | chr6_2:62010345-62010364 | None:intergenic | 30.0% | |
| CTCTTGAACCTTGAAATTAT+TGG | + | chr6_2:62010349-62010368 | None:intergenic | 30.0% | |
| TAATAGTATTCGATACAGAG+AGG | + | chr6_2:62010621-62010640 | None:intergenic | 30.0% | |
| !! | AGAAATAGATCGAAAGTGTT+TGG | - | chr6_2:62010729-62010748 | Msa0922720:intron | 30.0% |
| !! | GAAATAGATCGAAAGTGTTT+GGG | - | chr6_2:62010730-62010749 | Msa0922720:intron | 30.0% |
| GATTAAAATCCAAGCATACT+GGG | + | chr6_2:62010764-62010783 | None:intergenic | 30.0% | |
| TTCAGGAACACATAAAAACT+AGG | - | chr6_2:62010811-62010830 | Msa0922720:intron | 30.0% | |
| ACAACTAAACTATTGTCCTT+GGG | + | chr6_2:62010993-62011012 | None:intergenic | 30.0% | |
| TCATTGCTTCATTAAGATCT+TGG | + | chr6_2:62011031-62011050 | None:intergenic | 30.0% | |
| ATCTACACCATACTTACTTT+GGG | + | chr6_2:62011292-62011311 | None:intergenic | 30.0% | |
| AATCTACACCATACTTACTT+TGG | + | chr6_2:62011293-62011312 | None:intergenic | 30.0% | |
| CTGCTAATATTACTAAGTCT+TGG | - | chr6_2:62011469-62011488 | Msa0922720:CDS | 30.0% | |
| ATTGAATACCTACAATGTGT+AGG | + | chr6_2:62011587-62011606 | None:intergenic | 30.0% | |
| TCTTGACTTATATAACGCTT+AGG | - | chr6_2:62011669-62011688 | Msa0922720:CDS | 30.0% | |
| TATAACGCTTAGGATTTACA+TGG | - | chr6_2:62011679-62011698 | Msa0922720:CDS | 30.0% | |
| ! | AGAGAGAGTAGAATTTTGAA+CGG | - | chr6_2:62011737-62011756 | Msa0922720:CDS | 30.0% |
| GATGAAAACTGATTATGATG+TGG | - | chr6_2:62011852-62011871 | Msa0922720:CDS | 30.0% | |
| CAAAATCTTCCAAACAATGA+TGG | - | chr6_2:62009690-62009709 | Msa0922720:intron | 30.0% | |
| ATTTGAAGGCAAAAAATGGA+TGG | - | chr6_2:62010039-62010058 | Msa0922720:CDS | 30.0% | |
| AAAGTTTCACTGAATTGCTT+CGG | - | chr6_2:62010069-62010088 | Msa0922720:CDS | 30.0% | |
| !!! | CATCGGACACAATATTTTTT+TGG | + | chr6_2:62010149-62010168 | None:intergenic | 30.0% |
| CAAAAAAATATTGTGTCCGA+TGG | - | chr6_2:62010147-62010166 | Msa0922720:intron | 30.0% | |
| CTATATAAGATGCAGTCATT+AGG | + | chr6_2:62010202-62010221 | None:intergenic | 30.0% | |
| TGAACCTTGAAATTATTGGT+AGG | + | chr6_2:62010345-62010364 | None:intergenic | 30.0% | |
| CTCTTGAACCTTGAAATTAT+TGG | + | chr6_2:62010349-62010368 | None:intergenic | 30.0% | |
| TAATAGTATTCGATACAGAG+AGG | + | chr6_2:62010621-62010640 | None:intergenic | 30.0% | |
| !! | AGAAATAGATCGAAAGTGTT+TGG | - | chr6_2:62010729-62010748 | Msa0922720:intron | 30.0% |
| !! | GAAATAGATCGAAAGTGTTT+GGG | - | chr6_2:62010730-62010749 | Msa0922720:intron | 30.0% |
| GATTAAAATCCAAGCATACT+GGG | + | chr6_2:62010764-62010783 | None:intergenic | 30.0% | |
| TTCAGGAACACATAAAAACT+AGG | - | chr6_2:62010811-62010830 | Msa0922720:intron | 30.0% | |
| ACAACTAAACTATTGTCCTT+GGG | + | chr6_2:62010993-62011012 | None:intergenic | 30.0% | |
| TCATTGCTTCATTAAGATCT+TGG | + | chr6_2:62011031-62011050 | None:intergenic | 30.0% | |
| ATCTACACCATACTTACTTT+GGG | + | chr6_2:62011292-62011311 | None:intergenic | 30.0% | |
| AATCTACACCATACTTACTT+TGG | + | chr6_2:62011293-62011312 | None:intergenic | 30.0% | |
| CTGCTAATATTACTAAGTCT+TGG | - | chr6_2:62011469-62011488 | Msa0922720:CDS | 30.0% | |
| ATTGAATACCTACAATGTGT+AGG | + | chr6_2:62011587-62011606 | None:intergenic | 30.0% | |
| TCTTGACTTATATAACGCTT+AGG | - | chr6_2:62011669-62011688 | Msa0922720:CDS | 30.0% | |
| TATAACGCTTAGGATTTACA+TGG | - | chr6_2:62011679-62011698 | Msa0922720:CDS | 30.0% | |
| ! | AGAGAGAGTAGAATTTTGAA+CGG | - | chr6_2:62011737-62011756 | Msa0922720:CDS | 30.0% |
| GATGAAAACTGATTATGATG+TGG | - | chr6_2:62011852-62011871 | Msa0922720:CDS | 30.0% | |
| !! | TGAAGAGTTTGATAATGGAG+TGG | - | chr6_2:62009644-62009663 | Msa0922720:CDS | 35.0% |
| TATACACAATGGATATGGCA+CGG | - | chr6_2:62009813-62009832 | Msa0922720:intron | 35.0% | |
| GAAGACATGATACACGATAT+TGG | - | chr6_2:62009900-62009919 | Msa0922720:intron | 35.0% | |
| TTTACATACTCCATACCCAT+CGG | + | chr6_2:62010166-62010185 | None:intergenic | 35.0% | |
| GGTACCTACCAATAATTTCA+AGG | - | chr6_2:62010338-62010357 | Msa0922720:intron | 35.0% | |
| GAGATTGTTCTCTAATCCAA+AGG | - | chr6_2:62010366-62010385 | Msa0922720:intron | 35.0% | |
| !!! | ATCGAAAGTGTTTGGGATTT+TGG | - | chr6_2:62010737-62010756 | Msa0922720:intron | 35.0% |
| GGATTAAAATCCAAGCATAC+TGG | + | chr6_2:62010765-62010784 | None:intergenic | 35.0% | |
| GACAACTAAACTATTGTCCT+TGG | + | chr6_2:62010994-62011013 | None:intergenic | 35.0% | |
| GCAATAGAAAGAAGGCAAAA+TGG | - | chr6_2:62011260-62011279 | Msa0922720:intron | 35.0% | |
| CTTTCTTGGCTACAATTGAA+TGG | + | chr6_2:62011391-62011410 | None:intergenic | 35.0% | |
| TATCCACAATCATTGCCATT+AGG | + | chr6_2:62011417-62011436 | None:intergenic | 35.0% | |
| TATTACTAAGTCTTGGATGG+AGG | - | chr6_2:62011476-62011495 | Msa0922720:CDS | 35.0% | |
| TCATCTTCAGTTAATGTCGT+TGG | + | chr6_2:62011613-62011632 | None:intergenic | 35.0% | |
| ! | TGTATGATTTGCGAAACCAA+TGG | - | chr6_2:62011635-62011654 | Msa0922720:CDS | 35.0% |
| ! | GTATGATTTGCGAAACCAAT+GGG | - | chr6_2:62011636-62011655 | Msa0922720:CDS | 35.0% |
| TTTGTATCCGTCTTAATGTG+TGG | - | chr6_2:62011762-62011781 | Msa0922720:CDS | 35.0% | |
| AAAACCACCACACATTAAGA+CGG | + | chr6_2:62011772-62011791 | None:intergenic | 35.0% | |
| !! | TGAAGAGTTTGATAATGGAG+TGG | - | chr6_2:62009644-62009663 | Msa0922720:CDS | 35.0% |
| TATACACAATGGATATGGCA+CGG | - | chr6_2:62009813-62009832 | Msa0922720:intron | 35.0% | |
| GAAGACATGATACACGATAT+TGG | - | chr6_2:62009900-62009919 | Msa0922720:intron | 35.0% | |
| TTTACATACTCCATACCCAT+CGG | + | chr6_2:62010166-62010185 | None:intergenic | 35.0% | |
| GGTACCTACCAATAATTTCA+AGG | - | chr6_2:62010338-62010357 | Msa0922720:intron | 35.0% | |
| GAGATTGTTCTCTAATCCAA+AGG | - | chr6_2:62010366-62010385 | Msa0922720:intron | 35.0% | |
| !!! | ATCGAAAGTGTTTGGGATTT+TGG | - | chr6_2:62010737-62010756 | Msa0922720:intron | 35.0% |
| GGATTAAAATCCAAGCATAC+TGG | + | chr6_2:62010765-62010784 | None:intergenic | 35.0% | |
| GACAACTAAACTATTGTCCT+TGG | + | chr6_2:62010994-62011013 | None:intergenic | 35.0% | |
| GCAATAGAAAGAAGGCAAAA+TGG | - | chr6_2:62011260-62011279 | Msa0922720:intron | 35.0% | |
| CTTTCTTGGCTACAATTGAA+TGG | + | chr6_2:62011391-62011410 | None:intergenic | 35.0% | |
| TATCCACAATCATTGCCATT+AGG | + | chr6_2:62011417-62011436 | None:intergenic | 35.0% | |
| TATTACTAAGTCTTGGATGG+AGG | - | chr6_2:62011476-62011495 | Msa0922720:CDS | 35.0% | |
| TCATCTTCAGTTAATGTCGT+TGG | + | chr6_2:62011613-62011632 | None:intergenic | 35.0% | |
| ! | TGTATGATTTGCGAAACCAA+TGG | - | chr6_2:62011635-62011654 | Msa0922720:CDS | 35.0% |
| ! | GTATGATTTGCGAAACCAAT+GGG | - | chr6_2:62011636-62011655 | Msa0922720:CDS | 35.0% |
| TTTGTATCCGTCTTAATGTG+TGG | - | chr6_2:62011762-62011781 | Msa0922720:CDS | 35.0% | |
| AAAACCACCACACATTAAGA+CGG | + | chr6_2:62011772-62011791 | None:intergenic | 35.0% | |
| GGGAAAAGTCCATCATTGTT+TGG | + | chr6_2:62009702-62009721 | None:intergenic | 40.0% | |
| CACAAGAAACACAAGGACAT+GGG | + | chr6_2:62009722-62009741 | None:intergenic | 40.0% | |
| AAATAAGGGGCCATCTAGTT+TGG | - | chr6_2:62009772-62009791 | Msa0922720:intron | 40.0% | |
| AAATCCCGTTCCAAACTAGA+TGG | + | chr6_2:62009785-62009804 | None:intergenic | 40.0% | |
| !! | TTCTCTCTTTGGGATACACT+TGG | + | chr6_2:62009852-62009871 | None:intergenic | 40.0% |
| CACACTAACGTTCTCTCTTT+GGG | + | chr6_2:62009862-62009881 | None:intergenic | 40.0% | |
| AGAGAACGTTAGTGTGGATA+TGG | - | chr6_2:62009866-62009885 | Msa0922720:intron | 40.0% | |
| TTGACAGAAATGCTTCCAGA+AGG | - | chr6_2:62010095-62010114 | Msa0922720:CDS | 40.0% | |
| TTTGGCCTCGTAATAACGAT+CGG | + | chr6_2:62010131-62010150 | None:intergenic | 40.0% | |
| AATATTGTGTCCGATGGGTA+TGG | - | chr6_2:62010153-62010172 | Msa0922720:intron | 40.0% | |
| ! | TAGTGATGATGCAAGCACAA+AGG | - | chr6_2:62010294-62010313 | Msa0922720:intron | 40.0% |
| ! | AGTGATGATGCAAGCACAAA+GGG | - | chr6_2:62010295-62010314 | Msa0922720:intron | 40.0% |
| TGGTAGGTACCAAAACACTT+TGG | + | chr6_2:62010329-62010348 | None:intergenic | 40.0% | |
| ! | GATCTTGGTGCATTGAACAA+AGG | + | chr6_2:62011016-62011035 | None:intergenic | 40.0% |
| ! | TGGTTAACACAGAGCTTTAG+AGG | - | chr6_2:62011149-62011168 | Msa0922720:CDS | 40.0% |
| ! | TGGTTAACACAGAGCTTTAG+AGG | - | chr6_2:62011149-62011168 | Msa0922720:CDS | 40.0% |
| GTTTCGTCCCAAAGTAAGTA+TGG | - | chr6_2:62011282-62011301 | Msa0922720:intron | 40.0% | |
| TAGCCAAGAAAGCAACCTAA+TGG | - | chr6_2:62011399-62011418 | Msa0922720:CDS | 40.0% | |
| ! | TTGCCATTAGGTTGCTTTCT+TGG | + | chr6_2:62011405-62011424 | None:intergenic | 40.0% |
| CAACCTAATGGCAATGATTG+TGG | - | chr6_2:62011411-62011430 | Msa0922720:CDS | 40.0% | |
| CAAGAAAACAAGTTGCCCAT+TGG | + | chr6_2:62011654-62011673 | None:intergenic | 40.0% | |
| ! | GTCTTAATGTGTGGTGGTTT+TGG | - | chr6_2:62011771-62011790 | Msa0922720:CDS | 40.0% |
| TGATTATGATGTGGCTGAGA+TGG | - | chr6_2:62011861-62011880 | Msa0922720:CDS | 40.0% | |
| GATTATGATGTGGCTGAGAT+GGG | - | chr6_2:62011862-62011881 | Msa0922720:CDS | 40.0% | |
| GGGAAAAGTCCATCATTGTT+TGG | + | chr6_2:62009702-62009721 | None:intergenic | 40.0% | |
| CACAAGAAACACAAGGACAT+GGG | + | chr6_2:62009722-62009741 | None:intergenic | 40.0% | |
| AAATAAGGGGCCATCTAGTT+TGG | - | chr6_2:62009772-62009791 | Msa0922720:intron | 40.0% | |
| AAATCCCGTTCCAAACTAGA+TGG | + | chr6_2:62009785-62009804 | None:intergenic | 40.0% | |
| !! | TTCTCTCTTTGGGATACACT+TGG | + | chr6_2:62009852-62009871 | None:intergenic | 40.0% |
| CACACTAACGTTCTCTCTTT+GGG | + | chr6_2:62009862-62009881 | None:intergenic | 40.0% | |
| AGAGAACGTTAGTGTGGATA+TGG | - | chr6_2:62009866-62009885 | Msa0922720:intron | 40.0% | |
| TTGACAGAAATGCTTCCAGA+AGG | - | chr6_2:62010095-62010114 | Msa0922720:CDS | 40.0% | |
| TTTGGCCTCGTAATAACGAT+CGG | + | chr6_2:62010131-62010150 | None:intergenic | 40.0% | |
| AATATTGTGTCCGATGGGTA+TGG | - | chr6_2:62010153-62010172 | Msa0922720:intron | 40.0% | |
| ! | TAGTGATGATGCAAGCACAA+AGG | - | chr6_2:62010294-62010313 | Msa0922720:intron | 40.0% |
| ! | AGTGATGATGCAAGCACAAA+GGG | - | chr6_2:62010295-62010314 | Msa0922720:intron | 40.0% |
| TGGTAGGTACCAAAACACTT+TGG | + | chr6_2:62010329-62010348 | None:intergenic | 40.0% | |
| ! | GATCTTGGTGCATTGAACAA+AGG | + | chr6_2:62011016-62011035 | None:intergenic | 40.0% |
| ! | TGGTTAACACAGAGCTTTAG+AGG | - | chr6_2:62011149-62011168 | Msa0922720:CDS | 40.0% |
| ! | TGGTTAACACAGAGCTTTAG+AGG | - | chr6_2:62011149-62011168 | Msa0922720:CDS | 40.0% |
| GTTTCGTCCCAAAGTAAGTA+TGG | - | chr6_2:62011282-62011301 | Msa0922720:intron | 40.0% | |
| TAGCCAAGAAAGCAACCTAA+TGG | - | chr6_2:62011399-62011418 | Msa0922720:CDS | 40.0% | |
| ! | TTGCCATTAGGTTGCTTTCT+TGG | + | chr6_2:62011405-62011424 | None:intergenic | 40.0% |
| CAACCTAATGGCAATGATTG+TGG | - | chr6_2:62011411-62011430 | Msa0922720:CDS | 40.0% | |
| CAAGAAAACAAGTTGCCCAT+TGG | + | chr6_2:62011654-62011673 | None:intergenic | 40.0% | |
| ! | GTCTTAATGTGTGGTGGTTT+TGG | - | chr6_2:62011771-62011790 | Msa0922720:CDS | 40.0% |
| TGATTATGATGTGGCTGAGA+TGG | - | chr6_2:62011861-62011880 | Msa0922720:CDS | 40.0% | |
| GATTATGATGTGGCTGAGAT+GGG | - | chr6_2:62011862-62011881 | Msa0922720:CDS | 40.0% | |
| GCACAAGAAACACAAGGACA+TGG | + | chr6_2:62009723-62009742 | None:intergenic | 45.0% | |
| CTTGTGTTTCTTGTGCGAAC+CGG | - | chr6_2:62009727-62009746 | Msa0922720:intron | 45.0% | |
| TTGTGTTTCTTGTGCGAACC+GGG | - | chr6_2:62009728-62009747 | Msa0922720:intron | 45.0% | |
| ! | CCTTAGTAATGTTTGGCTCC+CGG | + | chr6_2:62009749-62009768 | None:intergenic | 45.0% |
| CCACACTAACGTTCTCTCTT+TGG | + | chr6_2:62009863-62009882 | None:intergenic | 45.0% | |
| CCAAAGAGAGAACGTTAGTG+TGG | - | chr6_2:62009860-62009879 | Msa0922720:intron | 45.0% | |
| TGTGGATATGGATGATCGAC+TGG | - | chr6_2:62009878-62009897 | Msa0922720:intron | 45.0% | |
| CAAGGAAGAACCTTTGTACC+CGG | - | chr6_2:62009971-62009990 | Msa0922720:intron | 45.0% | |
| AAGGAAGAACCTTTGTACCC+GGG | - | chr6_2:62009972-62009991 | Msa0922720:intron | 45.0% | |
| GTGTAAACTTTGTGCATCCC+GGG | + | chr6_2:62009992-62010011 | None:intergenic | 45.0% | |
| CGTGTAAACTTTGTGCATCC+CGG | + | chr6_2:62009993-62010012 | None:intergenic | 45.0% | |
| ATCGGCATTGTGTTACCTTC+TGG | + | chr6_2:62010113-62010132 | None:intergenic | 45.0% | |
| CAATGCCGATCGTTATTACG+AGG | - | chr6_2:62010123-62010142 | Msa0922720:intron | 45.0% | |
| TGATCATTGTCCGAAGTGCA+AGG | - | chr6_2:62010240-62010259 | Msa0922720:CDS | 45.0% | |
| TACCAAAACACTTTGGCAGG+AGG | + | chr6_2:62010322-62010341 | None:intergenic | 45.0% | |
| AGGTACCAAAACACTTTGGC+AGG | + | chr6_2:62010325-62010344 | None:intergenic | 45.0% | |
| CTAAGGTTCTTTGCGTCCTT+TGG | + | chr6_2:62010385-62010404 | None:intergenic | 45.0% | |
| AGGACGCAAAGAACCTTAGA+TGG | - | chr6_2:62010386-62010405 | Msa0922720:intron | 45.0% | |
| TCTCATCTGCATGCCATCTA+AGG | + | chr6_2:62010402-62010421 | None:intergenic | 45.0% | |
| GCAGATGAGAGAAAACGTGA+TGG | - | chr6_2:62010412-62010431 | Msa0922720:intron | 45.0% | |
| AACATGGCGAATCAGCTACA+TGG | + | chr6_2:62010447-62010466 | None:intergenic | 45.0% | |
| !! | TAGCTGATTCGCCATGTTGT+TGG | - | chr6_2:62010449-62010468 | Msa0922720:intron | 45.0% |
| TGATTCGCCATGTTGTTGGT+GGG | - | chr6_2:62010453-62010472 | Msa0922720:intron | 45.0% | |
| AGCATTACCCACCAACAACA+TGG | + | chr6_2:62010463-62010482 | None:intergenic | 45.0% | |
| ! | TGTTGTTGGTGGGTAATGCT+TGG | - | chr6_2:62010463-62010482 | Msa0922720:CDS | 45.0% |
| ! | GATTTTGGACCCAGTATGCT+TGG | - | chr6_2:62010752-62010771 | Msa0922720:intron | 45.0% |
| TTGTTCTTCTACGTGTGCAG+AGG | - | chr6_2:62010942-62010961 | Msa0922720:intron | 45.0% | |
| ! | AGAGGTTCATCAACTTGCTC+AGG | - | chr6_2:62011237-62011256 | Msa0922720:CDS | 45.0% |
| ! | GAGGTTCATCAACTTGCTCA+GGG | - | chr6_2:62011238-62011257 | Msa0922720:CDS | 45.0% |
| TGCTCAGGGCAATAGAAAGA+AGG | - | chr6_2:62011252-62011271 | Msa0922720:intron | 45.0% | |
| GTATCCGTCTTAATGTGTGG+TGG | - | chr6_2:62011765-62011784 | Msa0922720:CDS | 45.0% | |
| GCACAAGAAACACAAGGACA+TGG | + | chr6_2:62009723-62009742 | None:intergenic | 45.0% | |
| CTTGTGTTTCTTGTGCGAAC+CGG | - | chr6_2:62009727-62009746 | Msa0922720:intron | 45.0% | |
| TTGTGTTTCTTGTGCGAACC+GGG | - | chr6_2:62009728-62009747 | Msa0922720:intron | 45.0% | |
| ! | CCTTAGTAATGTTTGGCTCC+CGG | + | chr6_2:62009749-62009768 | None:intergenic | 45.0% |
| CCACACTAACGTTCTCTCTT+TGG | + | chr6_2:62009863-62009882 | None:intergenic | 45.0% | |
| CCAAAGAGAGAACGTTAGTG+TGG | - | chr6_2:62009860-62009879 | Msa0922720:intron | 45.0% | |
| TGTGGATATGGATGATCGAC+TGG | - | chr6_2:62009878-62009897 | Msa0922720:intron | 45.0% | |
| CAAGGAAGAACCTTTGTACC+CGG | - | chr6_2:62009971-62009990 | Msa0922720:intron | 45.0% | |
| AAGGAAGAACCTTTGTACCC+GGG | - | chr6_2:62009972-62009991 | Msa0922720:intron | 45.0% | |
| GTGTAAACTTTGTGCATCCC+GGG | + | chr6_2:62009992-62010011 | None:intergenic | 45.0% | |
| CGTGTAAACTTTGTGCATCC+CGG | + | chr6_2:62009993-62010012 | None:intergenic | 45.0% | |
| ATCGGCATTGTGTTACCTTC+TGG | + | chr6_2:62010113-62010132 | None:intergenic | 45.0% | |
| CAATGCCGATCGTTATTACG+AGG | - | chr6_2:62010123-62010142 | Msa0922720:intron | 45.0% | |
| TGATCATTGTCCGAAGTGCA+AGG | - | chr6_2:62010240-62010259 | Msa0922720:CDS | 45.0% | |
| TACCAAAACACTTTGGCAGG+AGG | + | chr6_2:62010322-62010341 | None:intergenic | 45.0% | |
| AGGTACCAAAACACTTTGGC+AGG | + | chr6_2:62010325-62010344 | None:intergenic | 45.0% | |
| CTAAGGTTCTTTGCGTCCTT+TGG | + | chr6_2:62010385-62010404 | None:intergenic | 45.0% | |
| AGGACGCAAAGAACCTTAGA+TGG | - | chr6_2:62010386-62010405 | Msa0922720:intron | 45.0% | |
| TCTCATCTGCATGCCATCTA+AGG | + | chr6_2:62010402-62010421 | None:intergenic | 45.0% | |
| GCAGATGAGAGAAAACGTGA+TGG | - | chr6_2:62010412-62010431 | Msa0922720:intron | 45.0% | |
| AACATGGCGAATCAGCTACA+TGG | + | chr6_2:62010447-62010466 | None:intergenic | 45.0% | |
| !! | TAGCTGATTCGCCATGTTGT+TGG | - | chr6_2:62010449-62010468 | Msa0922720:intron | 45.0% |
| TGATTCGCCATGTTGTTGGT+GGG | - | chr6_2:62010453-62010472 | Msa0922720:intron | 45.0% | |
| AGCATTACCCACCAACAACA+TGG | + | chr6_2:62010463-62010482 | None:intergenic | 45.0% | |
| ! | TGTTGTTGGTGGGTAATGCT+TGG | - | chr6_2:62010463-62010482 | Msa0922720:CDS | 45.0% |
| ! | GATTTTGGACCCAGTATGCT+TGG | - | chr6_2:62010752-62010771 | Msa0922720:intron | 45.0% |
| TTGTTCTTCTACGTGTGCAG+AGG | - | chr6_2:62010942-62010961 | Msa0922720:intron | 45.0% | |
| ! | AGAGGTTCATCAACTTGCTC+AGG | - | chr6_2:62011237-62011256 | Msa0922720:CDS | 45.0% |
| ! | GAGGTTCATCAACTTGCTCA+GGG | - | chr6_2:62011238-62011257 | Msa0922720:CDS | 45.0% |
| TGCTCAGGGCAATAGAAAGA+AGG | - | chr6_2:62011252-62011271 | Msa0922720:intron | 45.0% | |
| GTATCCGTCTTAATGTGTGG+TGG | - | chr6_2:62011765-62011784 | Msa0922720:CDS | 45.0% | |
| !! | AAAAGTAATTAATATTAATA+AGG | + | chr6_2:62011559-62011578 | None:intergenic | 5.0% |
| !! | AAAAGTAATTAATATTAATA+AGG | + | chr6_2:62011559-62011578 | None:intergenic | 5.0% |
| CGGTTCGCACAAGAAACACA+AGG | + | chr6_2:62009729-62009748 | None:intergenic | 50.0% | |
| CCGGGAGCCAAACATTACTA+AGG | - | chr6_2:62009746-62009765 | Msa0922720:intron | 50.0% | |
| ! | AGGGGCCATCTAGTTTGGAA+CGG | - | chr6_2:62009777-62009796 | Msa0922720:intron | 50.0% |
| TTTGTGCATCCCGGGTACAA+AGG | + | chr6_2:62009984-62010003 | None:intergenic | 50.0% | |
| TAGCGTGACACCTTGCACTT+CGG | + | chr6_2:62010253-62010272 | None:intergenic | 50.0% | |
| !! | GTCCTCCTGCCAAAGTGTTT+TGG | - | chr6_2:62010317-62010336 | Msa0922720:intron | 50.0% |
| ! | CTGATTCGCCATGTTGTTGG+TGG | - | chr6_2:62010452-62010471 | Msa0922720:intron | 50.0% |
| TCTACGTGTGCAGAGGACAT+TGG | - | chr6_2:62010949-62010968 | Msa0922720:intron | 50.0% | |
| CGGTTCGCACAAGAAACACA+AGG | + | chr6_2:62009729-62009748 | None:intergenic | 50.0% | |
| CCGGGAGCCAAACATTACTA+AGG | - | chr6_2:62009746-62009765 | Msa0922720:intron | 50.0% | |
| ! | AGGGGCCATCTAGTTTGGAA+CGG | - | chr6_2:62009777-62009796 | Msa0922720:intron | 50.0% |
| TTTGTGCATCCCGGGTACAA+AGG | + | chr6_2:62009984-62010003 | None:intergenic | 50.0% | |
| TAGCGTGACACCTTGCACTT+CGG | + | chr6_2:62010253-62010272 | None:intergenic | 50.0% | |
| !! | GTCCTCCTGCCAAAGTGTTT+TGG | - | chr6_2:62010317-62010336 | Msa0922720:intron | 50.0% |
| ! | CTGATTCGCCATGTTGTTGG+TGG | - | chr6_2:62010452-62010471 | Msa0922720:intron | 50.0% |
| TCTACGTGTGCAGAGGACAT+TGG | - | chr6_2:62010949-62010968 | Msa0922720:intron | 50.0% | |
| ! | GGGGCCATCTAGTTTGGAAC+GGG | - | chr6_2:62009778-62009797 | Msa0922720:intron | 55.0% |
| ! | GGGGCCATCTAGTTTGGAAC+GGG | - | chr6_2:62009778-62009797 | Msa0922720:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 62009609 | 62011912 | 62009609 | ID=Msa0922720;Name=Msa0922720 |
| chr6_2 | mRNA | 62009609 | 62011912 | 62009609 | ID=Msa0922720-mRNA-1;Parent=Msa0922720;Name=Msa0922720-mRNA-1;_AED=0.62;_eAED=0.79;_QI=0|0.16|0.14|0.57|1|1|7|0|402 |
| chr6_2 | exon | 62011352 | 62011912 | 62011352 | ID=Msa0922720-mRNA-1:exon:9591;Parent=Msa0922720-mRNA-1 |
| chr6_2 | exon | 62011004 | 62011265 | 62011004 | ID=Msa0922720-mRNA-1:exon:9590;Parent=Msa0922720-mRNA-1 |
| chr6_2 | exon | 62010757 | 62010817 | 62010757 | ID=Msa0922720-mRNA-1:exon:9589;Parent=Msa0922720-mRNA-1 |
| chr6_2 | exon | 62010455 | 62010559 | 62010455 | ID=Msa0922720-mRNA-1:exon:9588;Parent=Msa0922720-mRNA-1 |
| chr6_2 | exon | 62010227 | 62010290 | 62010227 | ID=Msa0922720-mRNA-1:exon:9587;Parent=Msa0922720-mRNA-1 |
| chr6_2 | exon | 62010024 | 62010119 | 62010024 | ID=Msa0922720-mRNA-1:exon:9586;Parent=Msa0922720-mRNA-1 |
| chr6_2 | exon | 62009609 | 62009668 | 62009609 | ID=Msa0922720-mRNA-1:exon:9585;Parent=Msa0922720-mRNA-1 |
| chr6_2 | CDS | 62011352 | 62011912 | 62011352 | ID=Msa0922720-mRNA-1:cds;Parent=Msa0922720-mRNA-1 |
| chr6_2 | CDS | 62011004 | 62011265 | 62011004 | ID=Msa0922720-mRNA-1:cds;Parent=Msa0922720-mRNA-1 |
| chr6_2 | CDS | 62010757 | 62010817 | 62010757 | ID=Msa0922720-mRNA-1:cds;Parent=Msa0922720-mRNA-1 |
| chr6_2 | CDS | 62010455 | 62010559 | 62010455 | ID=Msa0922720-mRNA-1:cds;Parent=Msa0922720-mRNA-1 |
| chr6_2 | CDS | 62010227 | 62010290 | 62010227 | ID=Msa0922720-mRNA-1:cds;Parent=Msa0922720-mRNA-1 |
| chr6_2 | CDS | 62010024 | 62010119 | 62010024 | ID=Msa0922720-mRNA-1:cds;Parent=Msa0922720-mRNA-1 |
| chr6_2 | CDS | 62009609 | 62009668 | 62009609 | ID=Msa0922720-mRNA-1:cds;Parent=Msa0922720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
