AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1175390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1175390 MtrunA17_Chr8g0345461 99.531 426 2 0 1 426 1 426 0.0 873
Msa1175390 MtrunA17_Chr1g0200081 95.642 436 8 2 1 426 1 435 0.0 846
Msa1175390 MtrunA17_Chr4g0050561 53.314 347 151 4 72 411 61 403 5.16e-120 355
Msa1175390 MtrunA17_Chr3g0145011 48.438 320 164 1 103 422 77 395 4.38e-111 332
Msa1175390 MtrunA17_Chr3g0141901 47.678 323 168 1 100 422 71 392 7.00e-111 332
Msa1175390 MtrunA17_Chr1g0192151 52.881 295 136 1 115 409 120 411 9.82e-106 319
Msa1175390 MtrunA17_Chr4g0014731 52.881 295 136 1 115 409 121 412 1.26e-105 319
Msa1175390 MtrunA17_Chr1g0182711 46.628 341 174 3 85 423 112 446 5.28e-105 318
Msa1175390 MtrunA17_Chr7g0262801 46.628 341 174 3 85 423 111 445 7.80e-105 318
Msa1175390 MtrunA17_Chr3g0108321 58.986 217 89 0 133 349 127 343 1.70e-92 283
Msa1175390 MtrunA17_Chr7g0217421 39.080 261 158 1 159 419 33 292 1.62e-64 212
Msa1175390 MtrunA17_Chr3g0143721 43.307 254 143 1 165 418 249 501 2.54e-63 216
Msa1175390 MtrunA17_Chr1g0180791 43.983 241 135 0 151 391 464 704 4.19e-62 214
Msa1175390 MtrunA17_Chr1g0180791 39.768 259 150 4 164 419 204 459 1.48e-58 205
Msa1175390 MtrunA17_Chr4g0052411 41.016 256 150 1 159 414 223 477 1.45e-61 211
Msa1175390 MtrunA17_Chr6g0476861 42.264 265 149 3 154 415 186 449 3.19e-61 210
Msa1175390 MtrunA17_Chr7g0264521 42.629 251 144 0 151 401 465 715 4.36e-61 212
Msa1175390 MtrunA17_Chr7g0264521 40.756 238 138 2 164 401 205 439 8.20e-58 202
Msa1175390 MtrunA17_Chr2g0297281 41.016 256 150 1 159 414 280 534 5.44e-61 211
Msa1175390 MtrunA17_Chr2g0327121 43.568 241 136 0 151 391 466 706 6.75e-60 208
Msa1175390 MtrunA17_Chr2g0327121 40.741 243 140 3 160 401 201 440 6.94e-56 197
Msa1175390 MtrunA17_Chr7g0255721 41.053 285 161 3 148 426 668 951 1.93e-59 208
Msa1175390 MtrunA17_Chr7g0255721 30.493 223 149 3 170 391 391 608 1.29e-26 112
Msa1175390 MtrunA17_Chr7g0255651 41.322 242 142 0 150 391 267 508 1.48e-58 201
Msa1175390 MtrunA17_Chr7g0255651 27.426 237 160 5 172 404 24 252 9.47e-20 91.7
Msa1175390 MtrunA17_Chr7g0260601 40.520 269 152 4 152 415 227 492 1.29e-57 201
Msa1175390 MtrunA17_Chr7g0248361 41.887 265 150 3 154 415 181 444 1.71e-57 199
Msa1175390 MtrunA17_Chr3g0094871 40.711 253 147 2 165 415 11 262 2.96e-57 194
Msa1175390 MtrunA17_Chr4g0031821 40.755 265 153 3 154 415 309 572 1.14e-56 199
Msa1175390 MtrunA17_Chr7g0255691 41.736 242 141 0 150 391 271 512 1.77e-55 192
Msa1175390 MtrunA17_Chr7g0255691 34.071 226 141 4 170 390 22 244 6.00e-30 122
Msa1175390 MtrunA17_Chr5g0429571 40.221 271 154 4 153 418 301 568 2.01e-55 196
Msa1175390 MtrunA17_Chr8g0362771 39.855 276 148 4 146 417 225 486 2.76e-53 189
Msa1175390 MtrunA17_Chr7g0255641 38.028 284 169 3 149 426 642 924 6.67e-53 190
Msa1175390 MtrunA17_Chr7g0255641 36.869 198 111 5 204 396 432 620 1.03e-27 116
Msa1175390 MtrunA17_Chr3g0104211 40.152 264 150 4 160 418 299 559 7.30e-53 189
Msa1175390 MtrunA17_Chr7g0255901 40.678 236 131 6 163 393 637 868 4.83e-50 182
Msa1175390 MtrunA17_Chr6g0456351 35.880 301 177 5 123 412 267 562 3.69e-49 176
Msa1175390 MtrunA17_Chr8g0388371 37.500 256 151 3 165 412 404 658 9.96e-49 178
Msa1175390 MtrunA17_Chr3g0135721 39.098 266 154 3 157 418 212 473 1.29e-48 176
Msa1175390 MtrunA17_Chr4g0033451 38.583 254 143 5 165 409 380 629 1.30e-48 178
Msa1175390 MtrunA17_Chr1g0158881 37.255 255 155 2 161 415 325 574 1.20e-47 174
Msa1175390 MtrunA17_Chr2g0331161 38.306 248 150 3 159 405 409 654 4.33e-47 173
Msa1175390 MtrunA17_Chr3g0135761 39.216 255 151 2 164 418 221 471 1.48e-46 170
Msa1175390 MtrunA17_Chr2g0277831 37.449 243 147 2 150 390 518 757 1.29e-44 166
Msa1175390 MtrunA17_Chr2g0277831 38.298 235 125 5 167 391 245 469 4.81e-39 149
Msa1175390 MtrunA17_Chr2g0316851 38.889 234 128 5 167 391 596 823 1.46e-44 166
Msa1175390 MtrunA17_Chr3g0086411 31.765 340 180 6 97 409 169 483 2.35e-43 158
Msa1175390 MtrunA17_Chr3g0086411 30.723 166 106 3 253 409 7 172 5.44e-15 76.6
Msa1175390 MtrunA17_Chr3g0129971 36.680 259 157 4 156 408 287 544 7.38e-43 160
Msa1175390 MtrunA17_Chr5g0432631 36.863 255 157 2 164 418 228 478 1.38e-42 160
Msa1175390 MtrunA17_Chr8g0387641 36.522 230 140 3 164 391 520 745 2.77e-42 159
Msa1175390 MtrunA17_Chr4g0026631 37.449 243 142 7 149 388 111 346 3.58e-42 154
Msa1175390 MtrunA17_Chr3g0127401 38.627 233 131 6 164 391 80 305 3.66e-42 152
Msa1175390 MtrunA17_Chr2g0321241 38.211 246 132 9 145 382 112 345 8.54e-42 153
Msa1175390 MtrunA17_Chr2g0327231 43.820 178 91 3 151 325 335 506 8.99e-42 154
Msa1175390 MtrunA17_Chr2g0327231 50.000 96 43 2 160 254 147 238 7.88e-21 94.7
Msa1175390 MtrunA17_Chr4g0004121 36.332 289 158 8 117 391 195 471 4.40e-41 152
Msa1175390 MtrunA17_Chr3g0127431 37.768 233 133 6 164 391 83 308 7.62e-41 149
Msa1175390 MtrunA17_Chr4g0038101 38.053 226 131 5 165 386 721 941 3.53e-40 153
Msa1175390 MtrunA17_Chr4g0043381 34.222 225 145 1 167 391 839 1060 1.58e-39 151
Msa1175390 MtrunA17_Chr5g0397121 35.146 239 149 3 165 401 513 747 5.28e-39 149
Msa1175390 MtrunA17_Chr3g0086401 35.581 267 137 7 150 390 370 627 1.03e-37 145
Msa1175390 MtrunA17_Chr3g0086401 32.273 220 127 7 174 381 103 312 4.37e-27 114
Msa1175390 MtrunA17_Chr1g0195731 36.797 231 137 5 165 391 934 1159 1.26e-37 145
Msa1175390 MtrunA17_Chr6g0462581 37.118 229 137 4 165 391 500 723 1.82e-37 145
Msa1175390 MtrunA17_Chr1g0202371 36.957 230 136 5 165 391 397 620 2.19e-37 144
Msa1175390 MtrunA17_Chr4g0052271 33.610 241 153 5 153 391 107 342 6.56e-37 139
Msa1175390 MtrunA17_Chr1g0195741 36.364 231 138 5 165 391 938 1163 1.40e-36 142
Msa1175390 MtrunA17_Chr1g0204031 36.364 231 139 5 164 391 556 781 1.66e-36 142
Msa1175390 MtrunA17_Chr1g0168321 33.708 267 136 4 152 415 151 379 2.11e-36 139
Msa1175390 MtrunA17_Chr7g0246111 33.600 250 139 7 154 391 201 435 5.49e-36 138
Msa1175390 MtrunA17_Chr3g0116131 35.841 226 136 5 165 386 902 1122 1.54e-35 139
Msa1175390 MtrunA17_Chr5g0432641 29.091 385 240 8 52 417 69 439 1.68e-35 138
Msa1175390 MtrunA17_Chr3g0135781 43.678 174 84 4 158 327 50 213 2.83e-35 129
Msa1175390 MtrunA17_Chr8g0357301 34.348 230 137 3 188 408 492 716 1.02e-34 137
Msa1175390 MtrunA17_Chr1g0202381 35.556 225 137 5 165 386 468 687 1.69e-34 136
Msa1175390 MtrunA17_Chr4g0047411 35.458 251 131 6 191 413 202 449 1.86e-34 135
Msa1175390 MtrunA17_Chr6g0459561 32.422 256 151 9 146 391 363 606 2.45e-34 135
Msa1175390 MtrunA17_Chr4g0062081 63.291 79 28 1 168 245 10 88 4.53e-30 112
Msa1175390 MtrunA17_Chr2g0289231 30.603 232 142 6 164 385 296 518 1.03e-28 118
Msa1175390 MtrunA17_Chr6g0459541 28.731 268 140 9 161 391 38 291 2.00e-27 112
Msa1175390 MtrunA17_Chr6g0459551 32.558 215 123 7 159 361 96 300 2.11e-25 107
Msa1175390 MtrunA17_Chr5g0432391 34.375 160 102 1 243 402 81 237 8.73e-23 99.8
Msa1175390 MtrunA17_Chr1g0190401 33.508 191 121 6 161 348 673 860 5.49e-21 95.9
Msa1175390 MtrunA17_Chr6g0459531 24.399 291 151 10 146 409 48 296 3.33e-16 79.3
Msa1175390 MtrunA17_Chr6g0450161 27.799 259 151 10 105 351 272 506 4.36e-15 77.4
Msa1175390 MtrunA17_Chr4g0039781 31.053 190 111 6 175 351 330 512 3.28e-14 74.7
Msa1175390 MtrunA17_Chr5g0404291 34.483 145 87 5 201 344 387 524 6.01e-14 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1175390 AT1G53750.1 96.714 426 14 0 1 426 1 426 0.0 848
Msa1175390 AT1G53780.2 86.514 393 52 1 33 425 227 618 0.0 714
Msa1175390 AT1G53780.1 86.514 393 52 1 33 425 206 597 0.0 712
Msa1175390 AT1G53780.4 86.514 393 52 1 33 425 206 597 0.0 712
Msa1175390 AT1G53780.3 86.514 393 52 1 33 425 205 596 0.0 712
Msa1175390 AT5G19990.2 53.666 341 147 4 78 411 11 347 6.80e-120 353
Msa1175390 AT5G19990.1 48.855 393 175 6 26 411 32 405 1.23e-119 355
Msa1175390 AT5G19990.3 48.855 393 175 6 26 411 32 405 1.23e-119 355
Msa1175390 AT5G20000.1 53.026 347 152 4 72 411 63 405 4.41e-119 353
Msa1175390 AT1G45000.1 47.368 323 169 1 100 422 71 392 2.19e-111 333
Msa1175390 AT5G43010.1 47.368 323 169 1 100 422 71 392 4.01e-111 332
Msa1175390 AT4G29040.1 46.628 341 174 3 85 423 109 443 1.30e-105 320
Msa1175390 AT2G20140.1 46.628 341 174 3 85 423 109 443 1.38e-105 320
Msa1175390 AT3G05530.1 52.542 295 137 1 115 409 121 412 6.23e-105 317
Msa1175390 AT5G58290.1 53.704 270 125 0 133 402 120 389 4.92e-104 315
Msa1175390 AT1G09100.1 52.542 295 137 1 115 409 120 411 5.79e-104 315
Msa1175390 AT1G45000.2 46.860 207 110 0 100 306 71 277 1.40e-67 218
Msa1175390 AT5G42270.1 44.094 254 141 1 165 418 247 499 2.05e-64 219
Msa1175390 AT5G15250.1 39.777 269 161 1 146 414 202 469 2.66e-63 216
Msa1175390 AT2G30950.1 39.925 268 160 1 147 414 206 472 8.83e-63 215
Msa1175390 AT2G30950.2 39.925 268 160 1 147 414 206 472 8.83e-63 215
Msa1175390 AT2G30950.3 39.925 268 160 1 147 414 206 472 8.83e-63 215
Msa1175390 AT2G30950.4 39.925 268 160 1 147 414 210 476 1.16e-62 214
Msa1175390 AT1G50250.1 42.913 254 144 1 165 418 259 511 1.26e-62 215
Msa1175390 AT3G53230.1 43.028 251 143 0 151 401 464 714 1.32e-61 213
Msa1175390 AT3G53230.1 42.128 235 132 3 160 393 199 430 4.01e-57 201
Msa1175390 AT1G06430.1 39.850 266 159 1 149 414 201 465 3.73e-61 210
Msa1175390 AT1G06430.3 39.850 266 159 1 149 414 201 465 3.73e-61 210
Msa1175390 AT1G06430.2 39.850 266 159 1 149 414 201 465 3.73e-61 210
Msa1175390 AT5G03340.1 43.568 241 136 0 151 391 463 703 2.54e-60 210
Msa1175390 AT5G03340.1 41.532 248 140 4 160 405 198 442 2.08e-58 204
Msa1175390 AT5G15250.2 36.644 292 161 2 146 414 202 492 1.59e-59 202
Msa1175390 AT3G09840.1 43.651 252 141 1 151 401 463 714 4.52e-59 206
Msa1175390 AT3G09840.1 41.564 243 138 3 164 405 203 442 5.47e-59 206
Msa1175390 AT1G07510.1 41.132 265 152 3 154 415 313 576 2.00e-58 205
Msa1175390 AT3G56690.1 42.623 244 135 2 149 390 705 945 5.97e-56 199
Msa1175390 AT3G56690.1 36.771 223 136 3 170 391 387 605 1.16e-40 155
Msa1175390 AT2G29080.1 41.509 265 152 2 153 415 307 570 6.29e-56 198
Msa1175390 AT3G47060.1 41.985 262 144 4 165 421 322 580 7.89e-56 197
Msa1175390 AT5G58870.1 41.603 262 145 4 165 421 326 584 4.97e-55 195
Msa1175390 AT3G02450.1 38.346 266 158 3 160 423 326 587 1.42e-50 181
Msa1175390 AT2G03670.1 39.918 243 145 1 150 391 268 510 1.81e-50 180
Msa1175390 AT2G03670.1 31.667 240 157 3 169 402 23 261 1.73e-33 132
Msa1175390 AT1G05910.1 39.592 245 137 4 164 401 377 617 2.14e-50 183
Msa1175390 AT1G03000.1 34.983 303 182 8 102 395 588 884 8.43e-50 181
Msa1175390 AT5G53170.1 37.255 255 155 2 161 415 355 604 1.51e-48 177
Msa1175390 AT5G53540.1 40.343 233 127 6 164 391 83 308 5.23e-48 169
Msa1175390 AT2G26140.1 39.286 252 149 2 167 418 226 473 6.94e-48 174
Msa1175390 AT4G23940.1 36.364 264 155 3 159 412 421 681 2.62e-47 174
Msa1175390 AT3G16290.1 37.903 248 151 3 159 405 401 646 1.68e-45 169
Msa1175390 AT3G15120.2 39.827 231 128 4 167 390 728 954 6.23e-45 167
Msa1175390 AT3G15120.1 40.773 233 123 5 167 390 718 944 7.66e-45 167
Msa1175390 AT4G27680.1 39.914 233 128 6 164 391 80 305 7.67e-45 160
Msa1175390 AT5G64580.1 37.838 259 154 5 156 408 304 561 1.09e-43 163
Msa1175390 AT1G80350.1 38.843 242 133 5 159 391 230 465 2.85e-41 153
Msa1175390 AT1G50140.2 32.099 324 184 9 91 386 594 909 9.43e-41 155
Msa1175390 AT1G50140.5 32.099 324 184 9 91 386 594 909 9.43e-41 155
Msa1175390 AT1G50140.3 32.407 324 183 9 91 386 616 931 1.10e-40 155
Msa1175390 AT1G50140.1 32.407 324 183 9 91 386 616 931 1.10e-40 155
Msa1175390 AT1G50140.4 32.407 324 183 9 91 386 616 931 1.10e-40 155
Msa1175390 AT3G01610.1 36.145 249 138 3 157 391 222 463 3.12e-40 153
Msa1175390 AT3G01610.1 38.865 229 135 3 163 390 523 747 9.53e-39 149
Msa1175390 AT3G01610.2 36.145 249 138 3 157 391 222 463 3.45e-40 153
Msa1175390 AT3G01610.2 38.865 229 135 3 163 390 523 747 1.11e-38 149
Msa1175390 AT5G08470.1 36.444 225 140 1 167 391 843 1064 6.74e-40 152
Msa1175390 AT5G08470.3 36.444 225 140 1 167 391 834 1055 7.04e-40 152
Msa1175390 AT4G28000.1 36.260 262 148 7 143 391 483 738 1.77e-39 151
Msa1175390 AT4G28000.3 37.118 229 137 4 165 391 517 740 2.43e-39 150
Msa1175390 AT1G64110.5 35.622 233 144 3 161 391 512 740 2.45e-39 150
Msa1175390 AT1G64110.3 35.622 233 144 3 161 391 512 740 2.45e-39 150
Msa1175390 AT1G64110.2 35.622 233 144 3 161 391 514 742 2.58e-39 150
Msa1175390 AT1G64110.4 35.622 233 144 3 161 391 514 742 2.58e-39 150
Msa1175390 AT4G28000.2 37.118 229 137 4 165 391 517 740 2.67e-39 150
Msa1175390 AT1G64110.1 35.622 233 144 3 161 391 509 737 2.67e-39 150
Msa1175390 AT3G19740.1 37.611 226 132 5 165 386 701 921 1.42e-38 149
Msa1175390 AT2G27600.1 35.685 241 145 7 145 382 109 342 2.40e-38 144
Msa1175390 AT2G34560.1 32.500 240 158 3 153 391 88 324 2.83e-38 142
Msa1175390 AT2G34560.2 32.500 240 158 3 153 391 97 333 2.95e-38 143
Msa1175390 AT5G52882.1 34.749 259 152 6 145 391 484 737 1.40e-37 145
Msa1175390 AT4G02480.1 36.364 231 138 5 165 391 960 1185 2.18e-37 145
Msa1175390 AT1G02890.1 34.231 260 159 7 165 419 941 1193 3.74e-36 142
Msa1175390 AT4G24860.3 35.776 232 140 5 164 391 814 1040 5.02e-36 141
Msa1175390 AT4G24860.1 35.776 232 140 5 164 391 816 1042 5.46e-36 141
Msa1175390 AT2G45500.4 33.471 242 150 6 154 391 69 303 5.48e-36 135
Msa1175390 AT2G45500.3 33.471 242 150 6 154 391 69 303 5.48e-36 135
Msa1175390 AT4G24860.4 35.776 232 140 5 164 391 789 1015 6.10e-36 141
Msa1175390 AT4G24860.2 35.776 232 140 5 164 391 812 1038 6.76e-36 141
Msa1175390 AT1G79560.2 34.783 230 136 3 188 408 512 736 1.60e-35 140
Msa1175390 AT1G79560.1 34.783 230 136 3 188 408 512 736 1.94e-35 139
Msa1175390 AT1G79560.3 34.783 230 136 3 188 408 512 736 2.18e-35 139
Msa1175390 AT2G45500.2 33.471 242 150 6 154 391 202 436 2.94e-35 136
Msa1175390 AT2G45500.1 33.471 242 150 6 154 391 206 440 3.96e-35 136
Msa1175390 AT2G45500.5 33.471 242 150 6 154 391 212 446 4.48e-35 136
Msa1175390 AT2G03670.2 31.667 240 157 3 169 402 23 261 3.61e-34 132
Msa1175390 AT2G03670.2 39.355 155 93 1 150 303 268 422 4.20e-28 115
Msa1175390 AT3G27120.1 30.389 283 171 8 146 409 381 656 3.04e-33 132
Msa1175390 AT4G04910.1 34.413 247 131 6 191 409 239 482 3.73e-33 132
Msa1175390 AT4G04180.2 30.213 235 139 6 164 385 310 532 1.28e-26 112
Msa1175390 AT4G04180.1 30.213 235 139 6 164 385 315 537 1.33e-26 112
Msa1175390 AT1G62130.2 29.259 270 146 8 135 397 725 956 2.04e-26 112
Msa1175390 AT1G62130.1 29.259 270 146 8 135 397 732 963 2.16e-26 112
Msa1175390 AT1G02890.2 30.769 260 140 8 165 419 941 1165 8.18e-24 105
Msa1175390 AT1G53790.1 72.603 73 13 1 17 89 9 74 1.84e-23 102
Msa1175390 AT1G53790.3 72.603 73 13 1 17 89 9 74 2.17e-23 102
Msa1175390 AT1G53790.2 72.603 73 13 1 17 89 9 74 2.17e-23 102
Msa1175390 AT5G08470.2 36.486 148 91 1 167 314 843 987 1.20e-21 98.2
Msa1175390 AT3G04340.1 33.333 204 129 5 150 348 763 964 9.34e-20 92.8
Msa1175390 AT5G16930.1 32.895 152 94 5 201 351 397 541 1.70e-13 72.8
Msa1175390 AT2G18330.1 33.793 145 88 5 201 344 384 521 4.20e-13 71.6
Msa1175390 AT3G03060.1 32.278 158 99 5 195 351 379 529 6.05e-13 71.2

Find 125 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGGAGTTGCACTGAATTTC+TGG 0.125750 8_1:+6708525 None:intergenic
TCAATTGTAGACCATATATT+TGG 0.132766 8_1:+6708505 None:intergenic
CAAGAAGTCTGGAACAATTT+TGG 0.155405 8_1:+6708284 None:intergenic
ATTTCGCTGTAGACTCTTAA+AGG 0.162899 8_1:-6708347 Msa1175390:three_prime_UTR
TTGGATCGTAAAGTTGAATT+TGG 0.208227 8_1:-6708975 Msa1175390:CDS
GATGGTTCGTGAACTATTTC+AGG 0.217377 8_1:-6709602 Msa1175390:intron
GAAATTGAAATTTATGATTC+TGG 0.235292 8_1:+6711850 None:intergenic
TGAATTTGGCCTTCCGGATT+TGG 0.254377 8_1:-6708961 Msa1175390:CDS
CACACAACACACACAGAGTT+TGG 0.274234 8_1:-6711892 Msa1175390:five_prime_UTR
CCAAACAAATGCTAGTTCTT+TGG 0.285796 8_1:+6708217 None:intergenic
TATTTAGCATCTTCAGAGTT+TGG 0.289818 8_1:+6710417 None:intergenic
CCAAAGGGTGTGCTTTGTTA+TGG 0.289972 8_1:-6709742 Msa1175390:CDS
CTCTGTTACAGTCTTCCTTC+TGG 0.296223 8_1:+6708589 None:intergenic
CCAAAGAACTAGCATTTGTT+TGG 0.307317 8_1:-6708217 Msa1175390:intron
ATGTTCTTACCAGTGGAGTT+TGG 0.333477 8_1:+6708852 None:intergenic
CCAGAGAAATTTGTCAAACT+TGG 0.335641 8_1:-6709775 Msa1175390:CDS
TGTAACAGAGAAAGACTTCT+TGG 0.347892 8_1:-6708576 Msa1175390:CDS
TGATGATTTCAGTTTGTTGT+TGG 0.350814 8_1:-6710211 Msa1175390:intron
AGGAACTGGCAAAACACTTT+TGG 0.351355 8_1:-6709713 Msa1175390:CDS
GCAGGAGGAGCAGCCTCTTC+AGG 0.355558 8_1:-6710558 Msa1175390:intron
TGTTCTTACCAGTGGAGTTT+GGG 0.356300 8_1:+6708853 None:intergenic
TAAAGTTGAATTTGGCCTTC+CGG 0.365501 8_1:-6708967 Msa1175390:CDS
TCTCTCTAGGAGCTGATATA+AGG 0.379334 8_1:-6708649 Msa1175390:intron
TACGAACAAGTTATGGCCTC+TGG 0.385315 8_1:+6708460 None:intergenic
ATTATTCTTCCAAGGGCATA+TGG 0.385870 8_1:-6708413 Msa1175390:three_prime_UTR
CCAAGTTTGACAAATTTCTC+TGG 0.388118 8_1:+6709775 None:intergenic
CAGTGCAACTCCCAAATATA+TGG 0.389031 8_1:-6708516 Msa1175390:CDS
GTAACACTAGGATCAATCTT+TGG 0.393294 8_1:+6709990 None:intergenic
TTTGATGAAGTTGATGCAAT+TGG 0.397183 8_1:-6709462 Msa1175390:CDS
GATGATTTCAGTTTGTTGTT+GGG 0.401893 8_1:-6710210 Msa1175390:intron
GGAGAAGGAAATAAAAGATA+TGG 0.415580 8_1:-6710999 Msa1175390:CDS
CAAAGAACTAGCATTTGTTT+GGG 0.417128 8_1:-6708216 Msa1175390:intron
ATTAAAGAGAGCAAGAAGTC+TGG 0.421492 8_1:+6708273 None:intergenic
TGTTATGGTCCACCAGGAAC+TGG 0.429324 8_1:-6709727 Msa1175390:CDS
CGCCCAGGTCTTAATAGTGC+TGG 0.430172 8_1:+6708999 None:intergenic
GAAATTGTGAATCAGCTTGA+TGG 0.438120 8_1:-6709381 Msa1175390:CDS
GACATCCCTCTCACAGTTCA+TGG 0.439200 8_1:+6708902 None:intergenic
CAATTGTAGACCATATATTT+GGG 0.443569 8_1:+6708506 None:intergenic
GGTATCAAGGAGTCTGATAC+TGG 0.444246 8_1:-6710629 Msa1175390:CDS
CCATAACAAAGCACACCCTT+TGG 0.448130 8_1:+6709742 None:intergenic
GATGACAGTTGAAGAGAAAC+CGG 0.451051 8_1:-6709964 Msa1175390:CDS
CGCTGTAGACTCTTAAAGGT+TGG 0.451828 8_1:-6708343 Msa1175390:three_prime_UTR
TGACTTATCTTATGAGATGA+AGG 0.454366 8_1:+6707154 None:intergenic
TTTCAGTTTGTTGTTGGGCT+AGG 0.455935 8_1:-6710205 Msa1175390:intron
AATTTCTAGGCCTGACACTT+TGG 0.458738 8_1:-6709024 Msa1175390:intron
GCTGTTAATAATAGGTATCA+AGG 0.474516 8_1:-6710642 Msa1175390:intron
TAGAAGAAGGAATGCGTGTT+GGG 0.476572 8_1:-6710159 Msa1175390:intron
GAAATAAACAGACCGTTAGT+TGG 0.483962 8_1:-6707252 Msa1175390:three_prime_UTR
AATGTTGTACGAACAAGTTA+TGG 0.490278 8_1:+6708453 None:intergenic
ATTCCTTCTTCTATGTCAGT+GGG 0.492396 8_1:+6710169 None:intergenic
GGATCAATCTTTGGAGGCAA+AGG 0.501500 8_1:+6709999 None:intergenic
ACTATTAAGACCTGGGCGAT+TGG 0.507194 8_1:-6708994 Msa1175390:CDS
AGTGCTGGATCCAAAGTGTC+AGG 0.511055 8_1:+6709014 None:intergenic
CATTCCTTCTTCTATGTCAG+TGG 0.512515 8_1:+6710168 None:intergenic
TTCTGACAAGCAAATGATGC+AGG 0.513033 8_1:-6710576 Msa1175390:CDS
CAGTGAAAATTATTCTTCCA+AGG 0.513675 8_1:-6708421 Msa1175390:three_prime_UTR
CGGCTTTGCCCAAACTCCAC+TGG 0.514233 8_1:-6708861 Msa1175390:intron
TAATGATGTTGGTGGTTGTA+AGG 0.514610 8_1:-6709931 Msa1175390:CDS
TGTGTCCTACTCTCCAAATC+CGG 0.514693 8_1:+6708948 None:intergenic
ACGAACAAGTTATGGCCTCT+GGG 0.528772 8_1:+6708461 None:intergenic
GTTCAGAAATATGTTGGTGA+GGG 0.534000 8_1:-6709631 Msa1175390:CDS
GCAGTGAATAAAGTCATCAA+AGG 0.539594 8_1:-6708551 Msa1175390:CDS
GAAACAAGATCCCACTGGCT+TGG 0.541173 8_1:+6710596 None:intergenic
ACATCATTATATGTCACATC+CGG 0.543417 8_1:+6709945 None:intergenic
AAATTGTGAATCAGCTTGAT+GGG 0.544829 8_1:-6709380 Msa1175390:CDS
TCATCCTCGTCAAGAGGGCG+AGG 0.545906 8_1:+6711766 None:intergenic
GTGCTTTGTTATGGTCCACC+AGG 0.550033 8_1:-6709733 Msa1175390:CDS
ATTAAAGAACCATATGCCCT+TGG 0.550173 8_1:+6708404 None:intergenic
AGGAGTGTGTGCACTGAAGC+TGG 0.550291 8_1:-6708629 Msa1175390:CDS
CGATTTGATGATGGTGTTGG+TGG 0.550394 8_1:-6709432 Msa1175390:CDS
TGTTGTTGGGCTAGGAGACA+AGG 0.552446 8_1:-6710197 Msa1175390:CDS
AAATTTCTCTGGATGAAGCA+TGG 0.554156 8_1:+6709786 None:intergenic
GAGAAAAGAATCACCTGAAG+AGG 0.556344 8_1:+6710545 None:intergenic
CGATATCATCCTCGTCAAGA+GGG 0.557238 8_1:+6711761 None:intergenic
CTTGGAATTGATCCTCCAAA+GGG 0.557396 8_1:-6709757 Msa1175390:CDS
AATTTCTCTGGATGAAGCAT+GGG 0.557842 8_1:+6709787 None:intergenic
AGTGAAAATTATTCTTCCAA+GGG 0.560679 8_1:-6708420 Msa1175390:three_prime_UTR
TTGTAGATTTGATTTAATCA+CGG 0.566168 8_1:+6707303 None:intergenic
TTACAGTCTTCCTTCTGGCA+CGG 0.569186 8_1:+6708594 None:intergenic
GATGAAGTTGATGCAATTGG+AGG 0.572576 8_1:-6709459 Msa1175390:CDS
ACACTAGGATCAATCTTTGG+AGG 0.573195 8_1:+6709993 None:intergenic
CAGTGAATAAAGTCATCAAA+GGG 0.573521 8_1:-6708550 Msa1175390:CDS
GATCCAGCACTATTAAGACC+TGG 0.574605 8_1:-6709002 Msa1175390:CDS
TGGTGTTGGTGGTGATAATG+AGG 0.577418 8_1:-6709421 Msa1175390:CDS
ACTTTACGATCCAATCGCCC+AGG 0.579318 8_1:+6708984 None:intergenic
ATCTTATGAGATGAAGGGAG+TGG 0.579787 8_1:+6707160 None:intergenic
TAACAAAGCACACCCTTTGG+AGG 0.580223 8_1:+6709745 None:intergenic
GAACTTGTTCAGAAATATGT+TGG 0.580468 8_1:-6709637 Msa1175390:CDS
GGAGGTGCACGATTTGATGA+TGG 0.586973 8_1:-6709441 Msa1175390:CDS
AAGAAAGTGAATGACTTATG+TGG 0.587059 8_1:-6710974 Msa1175390:intron
GCACGATTTGATGATGGTGT+TGG 0.588407 8_1:-6709435 Msa1175390:CDS
TCCTTCTTCTATGTCAGTGG+GGG 0.591463 8_1:+6710171 None:intergenic
GCCGAGCTAGAAGTTCAAAA+CGG 0.595410 8_1:+6708880 None:intergenic
ATAGAAGAAGGAATGCGTGT+TGG 0.596840 8_1:-6710160 Msa1175390:CDS
CAAGAACCATGAACTGTGAG+AGG 0.597489 8_1:-6708908 Msa1175390:CDS
GCGATATCATCCTCGTCAAG+AGG 0.599312 8_1:+6711760 None:intergenic
ACTTGGAATTGATCCTCCAA+AGG 0.602007 8_1:-6709758 Msa1175390:CDS
ATCCAGCACTATTAAGACCT+GGG 0.603471 8_1:-6709001 Msa1175390:CDS
TGTTCAGAAATATGTTGGTG+AGG 0.604104 8_1:-6709632 Msa1175390:CDS
TGAACATGAAGATGAGCTCA+AGG 0.604893 8_1:-6711800 Msa1175390:CDS
AGTTCTATTAGCAACAGCCC+TGG 0.605396 8_1:+6709690 None:intergenic
GTTTAGCTGCACCAAGCCAG+TGG 0.607205 8_1:-6710607 Msa1175390:CDS
TTCAGAAATATGTTGGTGAG+GGG 0.607694 8_1:-6709630 Msa1175390:CDS
CTTGATGGGTTTGATGCTCG+AGG 0.608897 8_1:-6709366 Msa1175390:CDS
TGTCAGAAACAAGATCCCAC+TGG 0.610786 8_1:+6710591 None:intergenic
GGCAAAGACGATATGATGCA+AGG 0.613333 8_1:+6708238 None:intergenic
GCCTTCCGGATTTGGAGAGT+AGG 0.615795 8_1:-6708953 Msa1175390:CDS
GACTTATCTTATGAGATGAA+GGG 0.620253 8_1:+6707155 None:intergenic
ACTGTCATCATTGTAACACT+AGG 0.620548 8_1:+6709978 None:intergenic
GTGACATATAATGATGTTGG+TGG 0.620991 8_1:-6709939 Msa1175390:CDS
GAACCCTCGCCCTCTTGACG+AGG 0.622772 8_1:-6711770 Msa1175390:CDS
CTTTCATCTACTTTCCCCAG+AGG 0.623018 8_1:-6708476 Msa1175390:three_prime_UTR
TCAGAAATATGTTGGTGAGG+GGG 0.626431 8_1:-6709629 Msa1175390:CDS
TTCCTTCTTCTATGTCAGTG+GGG 0.628784 8_1:+6710170 None:intergenic
TCCTACTCTCCAAATCCGGA+AGG 0.632047 8_1:+6708952 None:intergenic
CACTTCTCAAAACCAACTAA+CGG 0.633882 8_1:+6707240 None:intergenic
TGACAAGCAAATGATGCAGG+AGG 0.643366 8_1:-6710573 Msa1175390:CDS
TGTATGCTATCCGTGCCAGA+AGG 0.644872 8_1:-6708604 Msa1175390:CDS
CAATGTGAAGCAGATTGCAA+AGG 0.648835 8_1:-6710388 Msa1175390:intron
TTTAGCTGCACCAAGCCAGT+GGG 0.654427 8_1:-6710606 Msa1175390:CDS
GATGTGACATATAATGATGT+TGG 0.658033 8_1:-6709942 Msa1175390:CDS
CGAACAAGTTATGGCCTCTG+GGG 0.658156 8_1:+6708462 None:intergenic
AATCACGGTGAAAGTTACTG+TGG 0.659389 8_1:+6707318 None:intergenic
CATCCTCGTCAAGAGGGCGA+GGG 0.666767 8_1:+6711767 None:intergenic
AAGAACCATGAACTGTGAGA+GGG 0.682811 8_1:-6708907 Msa1175390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTTATTTTTTAATTA+AGG + chr8_1:6711640-6711659 None:intergenic 0.0%
!!! TTATTTTTATTTTTTAATTA+AGG - chr8_1:6711640-6711659 Msa1175390:intron 0.0%
!!! AAAAATCTTTTTTTTTTTGT+TGG - chr8_1:6707578-6707597 Msa1175390:intron 10.0%
!!! TAAAGTTTAAACTTTTTATA+TGG - chr8_1:6707774-6707793 Msa1175390:intron 10.0%
!! AATTTCAATTTCAATTTCAA+TGG - chr8_1:6707255-6707274 Msa1175390:three_prime_UTR 15.0%
!!! TATCTTTTATTTTATTTTCC+TGG - chr8_1:6708205-6708224 Msa1175390:intron 15.0%
!!! TTAATAGTGCTTTTATTATT+TGG - chr8_1:6708589-6708608 Msa1175390:CDS 15.0%
!! AGTTTATCATAAGTTATTTA+CGG + chr8_1:6708968-6708987 None:intergenic 15.0%
!!! AAATTTTTAATTTCTATGCA+AGG - chr8_1:6709273-6709292 Msa1175390:intron 15.0%
!! AAATAATAAAAATTGAGAAC+AGG + chr8_1:6711626-6711645 None:intergenic 15.0%
!! GAAATTGAAATTTATGATTC+TGG + chr8_1:6707247-6707266 None:intergenic 20.0%
!! TTAAAATTCTATAACGTTGA+AGG - chr8_1:6707603-6707622 Msa1175390:intron 20.0%
!!! AATATTCTGTTTTACTATGT+AGG - chr8_1:6708038-6708057 Msa1175390:intron 20.0%
!!! ATATTCTGTTTTACTATGTA+GGG - chr8_1:6708039-6708058 Msa1175390:intron 20.0%
!! CTTTGGTTAAAGATTAAATT+TGG + chr8_1:6708321-6708340 None:intergenic 20.0%
!! CAAATTTAATCTTTAACCAA+AGG - chr8_1:6708319-6708338 Msa1175390:three_prime_UTR 20.0%
!!! AAAAGATTTTTGTGATGTAT+AGG + chr8_1:6708734-6708753 None:intergenic 20.0%
!!! TTTTACTGTAGATGTTATTT+TGG - chr8_1:6709824-6709843 Msa1175390:intron 20.0%
!! TTGAAAGTTTGTATCATTAA+TGG - chr8_1:6710035-6710054 Msa1175390:intron 20.0%
!! AAAACAAGTTTGGATTATAT+GGG + chr8_1:6710349-6710368 None:intergenic 20.0%
!!! GTTTTGTTGGTAATTTTTTA+GGG - chr8_1:6711349-6711368 Msa1175390:intron 20.0%
!! AATCAATTGAGAAAATTGTT+TGG - chr8_1:6711382-6711401 Msa1175390:intron 20.0%
!!! TTGTAGATTTGATTTAATCA+CGG + chr8_1:6711794-6711813 None:intergenic 20.0%
!!! ACTAAAAATTTGGAGTTAAA+AGG - chr8_1:6711877-6711896 Msa1175390:five_prime_UTR 20.0%
! ATAGAGAAATTGGGAAATTA+GGG + chr8_1:6707416-6707435 None:intergenic 25.0%
! AATAGAGAAATTGGGAAATT+AGG + chr8_1:6707417-6707436 None:intergenic 25.0%
! GAAGCTAAAATAGAGAAATT+GGG + chr8_1:6707425-6707444 None:intergenic 25.0%
! TGAAGCTAAAATAGAGAAAT+TGG + chr8_1:6707426-6707445 None:intergenic 25.0%
! ATTGTTACAAAAAACGAGAT+CGG + chr8_1:6707449-6707468 None:intergenic 25.0%
!! ATTGCAAAATTTGATGATTC+TGG - chr8_1:6707541-6707560 Msa1175390:intron 25.0%
! TTGATTGGGTTTGTATAAAT+TGG - chr8_1:6707679-6707698 Msa1175390:intron 25.0%
! TTTATATGGAAGAATTACTG+AGG - chr8_1:6707788-6707807 Msa1175390:intron 25.0%
!! TTTTTGTAGCTATGCATTTA+GGG - chr8_1:6707825-6707844 Msa1175390:intron 25.0%
!!! TTTTTTATGCTTGTGGAATA+AGG + chr8_1:6708072-6708091 None:intergenic 25.0%
!!! ATTTTATTTTCCTGGTATTG+TGG - chr8_1:6708213-6708232 Msa1175390:intron 25.0%
! TTACAATTAGTCCGTTAATT+GGG - chr8_1:6708282-6708301 Msa1175390:three_prime_UTR 25.0%
! ATACAAATGTACCCAATTAA+CGG + chr8_1:6708296-6708315 None:intergenic 25.0%
!!! TTTTTTTGTTGCATTCATAG+CGG - chr8_1:6708373-6708392 Msa1175390:three_prime_UTR 25.0%
!! ATAGTGCTTTTATTATTTGG+TGG - chr8_1:6708592-6708611 Msa1175390:CDS 25.0%
! ACTATGGTTATTTATTGAAC+AGG - chr8_1:6708628-6708647 Msa1175390:CDS 25.0%
!! ATATGCTGTTTAATATGACA+AGG - chr8_1:6708817-6708836 Msa1175390:intron 25.0%
! TTATGATAAACTATCATCCA+TGG - chr8_1:6708976-6708995 Msa1175390:CDS 25.0%
! ACACTGCAATGATTAAATAA+AGG + chr8_1:6709047-6709066 None:intergenic 25.0%
! AATTTCAATCAAATGATACC+AGG + chr8_1:6709565-6709584 None:intergenic 25.0%
!!! AGGAAATATCAAAGTTTTGA+TGG - chr8_1:6709748-6709767 Msa1175390:CDS 25.0%
!!! TGGTTGATTTTACTACTATT+TGG - chr8_1:6709783-6709802 Msa1175390:CDS 25.0%
! TATGAGGTAAAAAAGAACTT+TGG + chr8_1:6709907-6709926 None:intergenic 25.0%
!! TGATTTTATCTCTTTATCGA+AGG + chr8_1:6709947-6709966 None:intergenic 25.0%
! CTTAGTACTTAAAAGATAGA+TGG + chr8_1:6710310-6710329 None:intergenic 25.0%
!!! CATCTATCTTTTAAGTACTA+AGG - chr8_1:6710308-6710327 Msa1175390:intron 25.0%
!!! TTTTAAGTACTAAGGTATTC+TGG - chr8_1:6710316-6710335 Msa1175390:intron 25.0%
! CAAAACAAGTTTGGATTATA+TGG + chr8_1:6710350-6710369 None:intergenic 25.0%
!!! CATATAATCCAAACTTGTTT+TGG - chr8_1:6710348-6710367 Msa1175390:intron 25.0%
! CAATTGTAGACCATATATTT+GGG + chr8_1:6710591-6710610 None:intergenic 25.0%
! TCAATTGTAGACCATATATT+TGG + chr8_1:6710592-6710611 None:intergenic 25.0%
! AGTGAAAATTATTCTTCCAA+GGG - chr8_1:6710674-6710693 Msa1175390:intron 25.0%
!! ACAATTTTGGATGTAACATT+AGG + chr8_1:6710800-6710819 None:intergenic 25.0%
! CAAATTGTATCTCAGATTTA+AGG - chr8_1:6711213-6711232 Msa1175390:intron 25.0%
!!! AAAGTTGAAGTGTTTTTGAT+TGG - chr8_1:6711327-6711346 Msa1175390:intron 25.0%
!!! GGTTTTGTTGGTAATTTTTT+AGG - chr8_1:6711348-6711367 Msa1175390:intron 25.0%
!!! GGTAATTTTTTAGGGAAAAA+AGG - chr8_1:6711357-6711376 Msa1175390:intron 25.0%
! TCAGTAATAGTGTTATGTTA+AGG - chr8_1:6711492-6711511 Msa1175390:intron 25.0%
! ATAGTGTTATGTTAAGGATT+AGG - chr8_1:6711498-6711517 Msa1175390:intron 25.0%
!!! AGCTTCAATATATTTTGACT+AGG - chr8_1:6711819-6711838 Msa1175390:intron 25.0%
!!! GCTTCAATATATTTTGACTA+GGG - chr8_1:6711820-6711839 Msa1175390:intron 25.0%
! TTGAGAAGTGACTAAAAATT+TGG - chr8_1:6711867-6711886 Msa1175390:five_prime_UTR 25.0%
! AATTTGATGATTCTGGATCT+AGG - chr8_1:6707548-6707567 Msa1175390:intron 30.0%
! ATTTGATGATTCTGGATCTA+GGG - chr8_1:6707549-6707568 Msa1175390:intron 30.0%
TGAAAAGAGGATCAATGAAA+AGG + chr8_1:6707655-6707674 None:intergenic 30.0%
!! TCCTCTTTTCAGATTTTGAT+TGG - chr8_1:6707664-6707683 Msa1175390:intron 30.0%
!!! CCTCTTTTCAGATTTTGATT+GGG - chr8_1:6707665-6707684 Msa1175390:intron 30.0%
! GTTTTTGTAGCTATGCATTT+AGG - chr8_1:6707824-6707843 Msa1175390:intron 30.0%
TAGAAAGCAAGTGATATCTT+TGG - chr8_1:6707886-6707905 Msa1175390:intron 30.0%
! TGTTTTACTATGTAGGGTTT+GGG - chr8_1:6708045-6708064 Msa1175390:intron 30.0%
TTCCACAAGCATAAAAAAAG+TGG - chr8_1:6708074-6708093 Msa1175390:intron 30.0%
AAGCATAAAAAAAGTGGAGA+AGG - chr8_1:6708080-6708099 Msa1175390:intron 30.0%
GGAGAAGGAAATAAAAGATA+TGG - chr8_1:6708095-6708114 Msa1175390:intron 30.0%
AAGAAAGTGAATGACTTATG+TGG - chr8_1:6708120-6708139 Msa1175390:intron 30.0%
! TCTTCTTTTCTTGAATGCTT+TGG - chr8_1:6708167-6708186 Msa1175390:intron 30.0%
GTTACAATTAGTCCGTTAAT+TGG - chr8_1:6708281-6708300 Msa1175390:three_prime_UTR 30.0%
AACTTCCTGCTGTTAATAAT+AGG - chr8_1:6708444-6708463 Msa1175390:three_prime_UTR 30.0%
TGATACCTATTATTAACAGC+AGG + chr8_1:6708452-6708471 None:intergenic 30.0%
GCTGTTAATAATAGGTATCA+AGG - chr8_1:6708452-6708471 Msa1175390:three_prime_UTR 30.0%
!! GCTTTTATTATTTGGTGGAA+TGG - chr8_1:6708597-6708616 Msa1175390:CDS 30.0%
TATTTAGCATCTTCAGAGTT+TGG + chr8_1:6708680-6708699 None:intergenic 30.0%
TTTGCAAAAAACTTAACGCT+CGG - chr8_1:6708841-6708860 Msa1175390:intron 30.0%
!! TGATGATTTCAGTTTGTTGT+TGG - chr8_1:6708883-6708902 Msa1175390:CDS 30.0%
!! GATGATTTCAGTTTGTTGTT+GGG - chr8_1:6708884-6708903 Msa1175390:CDS 30.0%
ACATCATTATATGTCACATC+CGG + chr8_1:6709152-6709171 None:intergenic 30.0%
GATGTGACATATAATGATGT+TGG - chr8_1:6709152-6709171 Msa1175390:intron 30.0%
TGTCATGTGAAATATGGAAA+TGG + chr8_1:6709230-6709249 None:intergenic 30.0%
TTCCATATTTCACATGACAA+AGG - chr8_1:6709231-6709250 Msa1175390:intron 30.0%
TTCCTTTGTCATGTGAAATA+TGG + chr8_1:6709236-6709255 None:intergenic 30.0%
! AACTGATGCGTGTTTTATAA+GGG - chr8_1:6709423-6709442 Msa1175390:CDS 30.0%
! GAACTTGTTCAGAAATATGT+TGG - chr8_1:6709457-6709476 Msa1175390:CDS 30.0%
TTATCATTGTTTCCATTACC+TGG - chr8_1:6709544-6709563 Msa1175390:intron 30.0%
AATCAAATGATACCAGGTAA+TGG + chr8_1:6709559-6709578 None:intergenic 30.0%
!! TTTGATGAAGTTGATGCAAT+TGG - chr8_1:6709632-6709651 Msa1175390:CDS 30.0%
AAATTGTGAATCAGCTTGAT+GGG - chr8_1:6709714-6709733 Msa1175390:CDS 30.0%
!!! CTTTTTTACCTCATAATGTC+TGG - chr8_1:6709912-6709931 Msa1175390:CDS 30.0%
! TTTTATCTCTTTATCGAAGG+AGG + chr8_1:6709944-6709963 None:intergenic 30.0%
!!! CTTCATGTTTTGATGTTTCA+TGG - chr8_1:6709989-6710008 Msa1175390:CDS 30.0%
!! AAATCGAAGAAAAGTACTCA+TGG + chr8_1:6710017-6710036 None:intergenic 30.0%
TTGGATCGTAAAGTTGAATT+TGG - chr8_1:6710119-6710138 Msa1175390:intron 30.0%
GTAAGAACATCTTAACAACT+GGG - chr8_1:6710255-6710274 Msa1175390:intron 30.0%
TTAAAAGATAGATGGTCAGA+AGG + chr8_1:6710302-6710321 None:intergenic 30.0%
!! TAGAGAGAACAAAAGTATCT+TGG + chr8_1:6710433-6710452 None:intergenic 30.0%
! AAGATACTTTTGTTCTCTCT+AGG - chr8_1:6710432-6710451 Msa1175390:CDS 30.0%
CAGTGAATAAAGTCATCAAA+GGG - chr8_1:6710544-6710563 Msa1175390:intron 30.0%
AATGTTGTACGAACAAGTTA+TGG + chr8_1:6710644-6710663 None:intergenic 30.0%
! TGGAAGAATAATTTTCACTG+AGG + chr8_1:6710673-6710692 None:intergenic 30.0%
CAGTGAAAATTATTCTTCCA+AGG - chr8_1:6710673-6710692 Msa1175390:intron 30.0%
CAAAGAACTAGCATTTGTTT+GGG - chr8_1:6710878-6710897 Msa1175390:intron 30.0%
! AACACTTCAACTTTTCTTCT+TGG + chr8_1:6711321-6711340 None:intergenic 30.0%
!!! GTGTTTTTGATTGGTTTTGT+TGG - chr8_1:6711336-6711355 Msa1175390:intron 30.0%
!! TTGTTTGGTTTGTAAGAATG+AGG - chr8_1:6711397-6711416 Msa1175390:intron 30.0%
! GAATTGTCGCATTTTCATTA+AGG - chr8_1:6711430-6711449 Msa1175390:intron 30.0%
TCTCAAGTCAATTCAACAAA+GGG + chr8_1:6711572-6711591 None:intergenic 30.0%
TTCTCAAGTCAATTCAACAA+AGG + chr8_1:6711573-6711592 None:intergenic 30.0%
!! TTGAATTGACTTGAGAAAGA+TGG - chr8_1:6711576-6711595 Msa1175390:intron 30.0%
!! TGAATTGACTTGAGAAAGAT+GGG - chr8_1:6711577-6711596 Msa1175390:intron 30.0%
TAAAAATTGAGAACAGGAAG+AGG + chr8_1:6711620-6711639 None:intergenic 30.0%
! AGAGGATTACGTAGGTTTTA+AGG + chr8_1:6707363-6707382 None:intergenic 35.0%
CCCAATCAAAATCTGAAAAG+AGG + chr8_1:6707668-6707687 None:intergenic 35.0%
! CTGTTTTACTATGTAGGGTT+TGG - chr8_1:6708044-6708063 Msa1175390:intron 35.0%
!!! CTCCACTTTTTTTATGCTTG+TGG + chr8_1:6708079-6708098 None:intergenic 35.0%
TTCTTGAATGCTTTGGTAGA+TGG - chr8_1:6708174-6708193 Msa1175390:intron 35.0%
CAACTATTGAGTCATTCCTT+TGG + chr8_1:6708338-6708357 None:intergenic 35.0%
GGAAGTTAACATCTAAGGAA+GGG + chr8_1:6708431-6708450 None:intergenic 35.0%
AGGAAGTTAACATCTAAGGA+AGG + chr8_1:6708432-6708451 None:intergenic 35.0%
! TATTATTTGGTGGAATGGCA+TGG - chr8_1:6708602-6708621 Msa1175390:CDS 35.0%
ATAAGCAAATAAGATCCCAC+TGG + chr8_1:6708788-6708807 None:intergenic 35.0%
ATTCCTTCTTCTATGTCAGT+GGG + chr8_1:6708928-6708947 None:intergenic 35.0%
GTAACACTAGGATCAATCTT+TGG + chr8_1:6709107-6709126 None:intergenic 35.0%
ACTGTCATCATTGTAACACT+AGG + chr8_1:6709119-6709138 None:intergenic 35.0%
GTGACATATAATGATGTTGG+TGG - chr8_1:6709155-6709174 Msa1175390:intron 35.0%
!! TAATGATGTTGGTGGTTGTA+AGG - chr8_1:6709163-6709182 Msa1175390:intron 35.0%
AATTTCTCTGGATGAAGCAT+GGG + chr8_1:6709310-6709329 None:intergenic 35.0%
AAATTTCTCTGGATGAAGCA+TGG + chr8_1:6709311-6709330 None:intergenic 35.0%
CCAAGTTTGACAAATTTCTC+TGG + chr8_1:6709322-6709341 None:intergenic 35.0%
CCAGAGAAATTTGTCAAACT+TGG - chr8_1:6709319-6709338 Msa1175390:intron 35.0%
! GAACTGATGCGTGTTTTATA+AGG - chr8_1:6709422-6709441 Msa1175390:CDS 35.0%
TGTTCAGAAATATGTTGGTG+AGG - chr8_1:6709462-6709481 Msa1175390:CDS 35.0%
! GTTCAGAAATATGTTGGTGA+GGG - chr8_1:6709463-6709482 Msa1175390:CDS 35.0%
! TTCAGAAATATGTTGGTGAG+GGG - chr8_1:6709464-6709483 Msa1175390:CDS 35.0%
GAAATTGTGAATCAGCTTGA+TGG - chr8_1:6709713-6709732 Msa1175390:CDS 35.0%
!! AAGTTTTGATGGCAACAAAC+AGG - chr8_1:6709759-6709778 Msa1175390:CDS 35.0%
! TAAAGTTGAATTTGGCCTTC+CGG - chr8_1:6710127-6710146 Msa1175390:intron 35.0%
TGTTAAGATGTTCTTACCAG+TGG + chr8_1:6710252-6710271 None:intergenic 35.0%
GGTAAGAACATCTTAACAAC+TGG - chr8_1:6710254-6710273 Msa1175390:intron 35.0%
CCTCAAAACCAAAACAAGTT+TGG + chr8_1:6710359-6710378 None:intergenic 35.0%
!!! CCAAACTTGTTTTGGTTTTG+AGG - chr8_1:6710356-6710375 Msa1175390:intron 35.0%
TGTAACAGAGAAAGACTTCT+TGG - chr8_1:6710518-6710537 Msa1175390:intron 35.0%
GCAGTGAATAAAGTCATCAA+AGG - chr8_1:6710543-6710562 Msa1175390:intron 35.0%
! ATTATTCTTCCAAGGGCATA+TGG - chr8_1:6710681-6710700 Msa1175390:intron 35.0%
ATTAAAGAACCATATGCCCT+TGG + chr8_1:6710693-6710712 None:intergenic 35.0%
ATTTCGCTGTAGACTCTTAA+AGG - chr8_1:6710747-6710766 Msa1175390:intron 35.0%
!! CAAGAAGTCTGGAACAATTT+TGG + chr8_1:6710813-6710832 None:intergenic 35.0%
ATTAAAGAGAGCAAGAAGTC+TGG + chr8_1:6710824-6710843 None:intergenic 35.0%
! CCAAACAAATGCTAGTTCTT+TGG + chr8_1:6710880-6710899 None:intergenic 35.0%
CCAAAGAACTAGCATTTGTT+TGG - chr8_1:6710877-6710896 Msa1175390:intron 35.0%
!! AAAGTTTGTTGGTTGTTGGA+TGG + chr8_1:6711037-6711056 None:intergenic 35.0%
!!! CTTTTTGGGTGAAAGTTTGT+TGG + chr8_1:6711048-6711067 None:intergenic 35.0%
! TTGATTTTCCTCTACATCCA+TGG + chr8_1:6711160-6711179 None:intergenic 35.0%
! CTTCAACTTTTCTTCTTGGA+AGG + chr8_1:6711317-6711336 None:intergenic 35.0%
GGATTAGGAAAAGAGACATT+AGG - chr8_1:6711513-6711532 Msa1175390:intron 35.0%
GAAATAAACAGACCGTTAGT+TGG - chr8_1:6711842-6711861 Msa1175390:intron 35.0%
CACTTCTCAAAACCAACTAA+CGG + chr8_1:6711857-6711876 None:intergenic 35.0%
TGAACATGAAGATGAGCTCA+AGG - chr8_1:6707294-6707313 Msa1175390:three_prime_UTR 40.0%
! GTGATTTGTGTCGTGATGTT+AGG - chr8_1:6707751-6707770 Msa1175390:intron 40.0%
ATGGAAGAATTACTGAGGTG+AGG - chr8_1:6707793-6707812 Msa1175390:intron 40.0%
!! TAGGGTTGATGATGTGATTG+TGG - chr8_1:6707843-6707862 Msa1175390:intron 40.0%
AAACCTAGCAGTGAAAGTCA+TGG + chr8_1:6707935-6707954 None:intergenic 40.0%
ATGTAATGCACCACAATACC+AGG + chr8_1:6708226-6708245 None:intergenic 40.0%
AAGTGACTACAGACAGCAAA+GGG + chr8_1:6708256-6708275 None:intergenic 40.0%
AAAGTGACTACAGACAGCAA+AGG + chr8_1:6708257-6708276 None:intergenic 40.0%
CTCAATAGTTGACATGACGT+AGG - chr8_1:6708347-6708366 Msa1175390:three_prime_UTR 40.0%
AGTTAACATCTAAGGAAGGG+TGG + chr8_1:6708428-6708447 None:intergenic 40.0%
CAGCAGGAAGTTAACATCTA+AGG + chr8_1:6708436-6708455 None:intergenic 40.0%
TTCTGACAAGCAAATGATGC+AGG - chr8_1:6708518-6708537 Msa1175390:CDS 40.0%
GAGAAAAGAATCACCTGAAG+AGG + chr8_1:6708552-6708571 None:intergenic 40.0%
CAATGTGAAGCAGATTGCAA+AGG - chr8_1:6708706-6708725 Msa1175390:intron 40.0%
TTGGTGCAGCTAATAGATGA+AGG + chr8_1:6708764-6708783 None:intergenic 40.0%
CTGAAATCATCAAAGCAACG+AGG + chr8_1:6708875-6708894 None:intergenic 40.0%
!! TTTCAGTTTGTTGTTGGGCT+AGG - chr8_1:6708889-6708908 Msa1175390:CDS 40.0%
TTCCTTCTTCTATGTCAGTG+GGG + chr8_1:6708927-6708946 None:intergenic 40.0%
CATTCCTTCTTCTATGTCAG+TGG + chr8_1:6708929-6708948 None:intergenic 40.0%
ATAGAAGAAGGAATGCGTGT+TGG - chr8_1:6708934-6708953 Msa1175390:CDS 40.0%
TAGAAGAAGGAATGCGTGTT+GGG - chr8_1:6708935-6708954 Msa1175390:CDS 40.0%
TGCTGTTACTCTTCTTTCCA+TGG + chr8_1:6708996-6709015 None:intergenic 40.0%
ACACTAGGATCAATCTTTGG+AGG + chr8_1:6709104-6709123 None:intergenic 40.0%
GATGACAGTTGAAGAGAAAC+CGG - chr8_1:6709130-6709149 Msa1175390:intron 40.0%
ACTTGGAATTGATCCTCCAA+AGG - chr8_1:6709336-6709355 Msa1175390:CDS 40.0%
CTTGGAATTGATCCTCCAAA+GGG - chr8_1:6709337-6709356 Msa1175390:CDS 40.0%
!!! AAAAGTGTTTTGCCAGTTCC+TGG + chr8_1:6709382-6709401 None:intergenic 40.0%
! AGGAACTGGCAAAACACTTT+TGG - chr8_1:6709381-6709400 Msa1175390:CDS 40.0%
! GCGTGTTTTATAAGGGTCAT+TGG - chr8_1:6709430-6709449 Msa1175390:CDS 40.0%
! TCAGAAATATGTTGGTGAGG+GGG - chr8_1:6709465-6709484 Msa1175390:CDS 40.0%
GATGGTTCGTGAACTATTTC+AGG - chr8_1:6709492-6709511 Msa1175390:CDS 40.0%
AAATTGTTGCCTCGTGTAGA+TGG - chr8_1:6709580-6709599 Msa1175390:intron 40.0%
!!! AATGCACGCCTTTTTTGAAC+GGG + chr8_1:6709606-6709625 None:intergenic 40.0%
!!! CAATGCACGCCTTTTTTGAA+CGG + chr8_1:6709607-6709626 None:intergenic 40.0%
!! GATGAAGTTGATGCAATTGG+AGG - chr8_1:6709635-6709654 Msa1175390:CDS 40.0%
! TTTGATGGCAACAAACAGGT+TGG - chr8_1:6709763-6709782 Msa1175390:CDS 40.0%
TCTCTTTATCGAAGGAGGAT+GGG + chr8_1:6709939-6709958 None:intergenic 40.0%
ATCTCTTTATCGAAGGAGGA+TGG + chr8_1:6709940-6709959 None:intergenic 40.0%
! GCCTTTTGTCCACAATTTCT+AGG - chr8_1:6710057-6710076 Msa1175390:intron 40.0%
GCCTAGAAATTGTGGACAAA+AGG + chr8_1:6710061-6710080 None:intergenic 40.0%
! AATTTCTAGGCCTGACACTT+TGG - chr8_1:6710070-6710089 Msa1175390:intron 40.0%
ATCCAGCACTATTAAGACCT+GGG - chr8_1:6710093-6710112 Msa1175390:intron 40.0%
AAGAACCATGAACTGTGAGA+GGG - chr8_1:6710187-6710206 Msa1175390:CDS 40.0%
!! TCCGTTTTGAACTTCTAGCT+CGG - chr8_1:6710213-6710232 Msa1175390:intron 40.0%
TGTTCTTACCAGTGGAGTTT+GGG + chr8_1:6710244-6710263 None:intergenic 40.0%
ATGTTCTTACCAGTGGAGTT+TGG + chr8_1:6710245-6710264 None:intergenic 40.0%
! TCTCTCTAGGAGCTGATATA+AGG - chr8_1:6710445-6710464 Msa1175390:CDS 40.0%
CAGTGCAACTCCCAAATATA+TGG - chr8_1:6710578-6710597 Msa1175390:CDS 40.0%
! ATGGTTGATGTCTTCGTTGA+TGG + chr8_1:6711009-6711028 None:intergenic 40.0%
TCAACGAAGACATCAACCAT+TGG - chr8_1:6711009-6711028 Msa1175390:CDS 40.0%
!! GGTGAAAGTTTGTTGGTTGT+TGG + chr8_1:6711041-6711060 None:intergenic 40.0%
! GGGTTGCTAGTGTTCTTTTT+GGG + chr8_1:6711062-6711081 None:intergenic 40.0%
! TGGGTTGCTAGTGTTCTTTT+TGG + chr8_1:6711063-6711082 None:intergenic 40.0%
! TGGGTTGAAGAATGGAACAT+GGG + chr8_1:6711082-6711101 None:intergenic 40.0%
! ATGGGTTGAAGAATGGAACA+TGG + chr8_1:6711083-6711102 None:intergenic 40.0%
ATGTTCCATTCTTCAACCCA+TGG - chr8_1:6711082-6711101 Msa1175390:intron 40.0%
! CTTATCTGGAACTTGTTCCA+TGG + chr8_1:6711108-6711127 None:intergenic 40.0%
GAAGATGTGCATCTCTTATC+TGG + chr8_1:6711122-6711141 None:intergenic 40.0%
! CAACTTTTCTTCTTGGAAGG+AGG + chr8_1:6711314-6711333 None:intergenic 40.0%
AGAACAGGAAGAGGAACAAA+GGG + chr8_1:6711611-6711630 None:intergenic 40.0%
TGTCGCAGCTTCAAACAAAT+GGG + chr8_1:6711739-6711758 None:intergenic 40.0%
TTGTCGCAGCTTCAAACAAA+TGG + chr8_1:6711740-6711759 None:intergenic 40.0%
AATCACGGTGAAAGTTACTG+TGG + chr8_1:6711779-6711798 None:intergenic 40.0%
CACACAACACACACAGAGTT+TGG - chr8_1:6707202-6707221 Msa1175390:three_prime_UTR 45.0%
CGATATCATCCTCGTCAAGA+GGG + chr8_1:6707336-6707355 None:intergenic 45.0%
AGAGAGAGAGAGGATTACGT+AGG + chr8_1:6707371-6707390 None:intergenic 45.0%
! ATTGGTGCTTGTACTAGCTG+TGG - chr8_1:6707697-6707716 Msa1175390:intron 45.0%
GATCCATGACTTTCACTGCT+AGG - chr8_1:6707929-6707948 Msa1175390:intron 45.0%
AGTGACTACAGACAGCAAAG+GGG + chr8_1:6708255-6708274 None:intergenic 45.0%
! GCTGTCTGTAGTCACTTTGA+TGG - chr8_1:6708259-6708278 Msa1175390:three_prime_UTR 45.0%
GGTATCAAGGAGTCTGATAC+TGG - chr8_1:6708465-6708484 Msa1175390:three_prime_UTR 45.0%
TGTCAGAAACAAGATCCCAC+TGG + chr8_1:6708506-6708525 None:intergenic 45.0%
TGACAAGCAAATGATGCAGG+AGG - chr8_1:6708521-6708540 Msa1175390:CDS 45.0%
TGGAATGGCATGGCTAACTA+TGG - chr8_1:6708612-6708631 Msa1175390:CDS 45.0%
! CAAATAAGATCCCACTGGCT+TGG + chr8_1:6708783-6708802 None:intergenic 45.0%
TCCTTCTTCTATGTCAGTGG+GGG + chr8_1:6708926-6708945 None:intergenic 45.0%
! GGATCAATCTTTGGAGGCAA+AGG + chr8_1:6709098-6709117 None:intergenic 45.0%
TAACAAAGCACACCCTTTGG+AGG + chr8_1:6709352-6709371 None:intergenic 45.0%
CCATAACAAAGCACACCCTT+TGG + chr8_1:6709355-6709374 None:intergenic 45.0%
! CCAAAGGGTGTGCTTTGTTA+TGG - chr8_1:6709352-6709371 Msa1175390:CDS 45.0%
! TGGCAAAACACTTTTGGCCA+GGG - chr8_1:6709387-6709406 Msa1175390:CDS 45.0%
AGTTCTATTAGCAACAGCCC+TGG + chr8_1:6709407-6709426 None:intergenic 45.0%
GTAGATGGCCCGTTCAAAAA+AGG - chr8_1:6709595-6709614 Msa1175390:intron 45.0%
!! GCACGATTTGATGATGGTGT+TGG - chr8_1:6709659-6709678 Msa1175390:CDS 45.0%
!! CGATTTGATGATGGTGTTGG+TGG - chr8_1:6709662-6709681 Msa1175390:CDS 45.0%
!! TGGTGTTGGTGGTGATAATG+AGG - chr8_1:6709673-6709692 Msa1175390:CDS 45.0%
CTCTTTATCGAAGGAGGATG+GGG + chr8_1:6709938-6709957 None:intergenic 45.0%
AGTGTCAGGCCTAGAAATTG+TGG + chr8_1:6710069-6710088 None:intergenic 45.0%
GATCCAGCACTATTAAGACC+TGG - chr8_1:6710092-6710111 Msa1175390:intron 45.0%
ACTATTAAGACCTGGGCGAT+TGG - chr8_1:6710100-6710119 Msa1175390:intron 45.0%
! TGAATTTGGCCTTCCGGATT+TGG - chr8_1:6710133-6710152 Msa1175390:intron 45.0%
TGTGTCCTACTCTCCAAATC+CGG + chr8_1:6710149-6710168 None:intergenic 45.0%
CAAGAACCATGAACTGTGAG+AGG - chr8_1:6710186-6710205 Msa1175390:CDS 45.0%
GCCGAGCTAGAAGTTCAAAA+CGG + chr8_1:6710217-6710236 None:intergenic 45.0%
TTACAGTCTTCCTTCTGGCA+CGG + chr8_1:6710503-6710522 None:intergenic 45.0%
CTCTGTTACAGTCTTCCTTC+TGG + chr8_1:6710508-6710527 None:intergenic 45.0%
TGGGAGTTGCACTGAATTTC+TGG + chr8_1:6710572-6710591 None:intergenic 45.0%
CTTTCATCTACTTTCCCCAG+AGG - chr8_1:6710618-6710637 Msa1175390:CDS 45.0%
ACGAACAAGTTATGGCCTCT+GGG + chr8_1:6710636-6710655 None:intergenic 45.0%
TACGAACAAGTTATGGCCTC+TGG + chr8_1:6710637-6710656 None:intergenic 45.0%
CGCTGTAGACTCTTAAAGGT+TGG - chr8_1:6710751-6710770 Msa1175390:intron 45.0%
GGCAAAGACGATATGATGCA+AGG + chr8_1:6710859-6710878 None:intergenic 45.0%
TAAGCTGATGATTGGGGCAA+AGG + chr8_1:6711675-6711694 None:intergenic 45.0%
CACGTGTAAGCTGATGATTG+GGG + chr8_1:6711669-6711688 None:intergenic 45.0%
CCACGTGTAAGCTGATGATT+GGG + chr8_1:6711668-6711687 None:intergenic 45.0%
TGGTTGTTGGATGGATCCAA+TGG + chr8_1:6711028-6711047 None:intergenic 45.0%
TCGTGTTGTCAAGTCATCCA+TGG - chr8_1:6711140-6711159 Msa1175390:intron 45.0%
CAAGTCATCCATGGATGTAG+AGG - chr8_1:6711149-6711168 Msa1175390:intron 45.0%
GAGAACAGGAAGAGGAACAA+AGG + chr8_1:6711612-6711631 None:intergenic 45.0%
CCACGTGTAAGCTGATGATT+GGG - chr8_1:6711668-6711687 Msa1175390:intron 45.0%
CACGTGTAAGCTGATGATTG+GGG - chr8_1:6711669-6711688 Msa1175390:intron 45.0%
TAAGCTGATGATTGGGGCAA+AGG - chr8_1:6711675-6711694 Msa1175390:intron 45.0%
GTCGCAGCTTCAAACAAATG+GGG + chr8_1:6711738-6711757 None:intergenic 45.0%
GCGATATCATCCTCGTCAAG+AGG + chr8_1:6707337-6707356 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + chr8_1:6707379-6707398 None:intergenic 50.0%
TTTAGCTGCACCAAGCCAGT+GGG - chr8_1:6708488-6708507 Msa1175390:exon 50.0%
! GAAACAAGATCCCACTGGCT+TGG + chr8_1:6708501-6708520 None:intergenic 50.0%
TATTAGCTGCACCAAGCCAG+TGG - chr8_1:6708769-6708788 Msa1175390:intron 50.0%
ATTAGCTGCACCAAGCCAGT+GGG - chr8_1:6708770-6708789 Msa1175390:intron 50.0%
! TGTTGTTGGGCTAGGAGACA+AGG - chr8_1:6708897-6708916 Msa1175390:CDS 50.0%
TCCCCCACTGACATAGAAGA+AGG - chr8_1:6708922-6708941 Msa1175390:CDS 50.0%
! GTGCTTTGTTATGGTCCACC+AGG - chr8_1:6709361-6709380 Msa1175390:CDS 50.0%
TGTTATGGTCCACCAGGAAC+TGG - chr8_1:6709367-6709386 Msa1175390:CDS 50.0%
! AGTGTTTTGCCAGTTCCTGG+TGG + chr8_1:6709379-6709398 None:intergenic 50.0%
! CTGGCAAAACACTTTTGGCC+AGG - chr8_1:6709386-6709405 Msa1175390:CDS 50.0%
! AATATGTTGGTGAGGGGGCT+CGG - chr8_1:6709470-6709489 Msa1175390:CDS 50.0%
! GGAGGTGCACGATTTGATGA+TGG - chr8_1:6709653-6709672 Msa1175390:CDS 50.0%
!! CTTGATGGGTTTGATGCTCG+AGG - chr8_1:6709728-6709747 Msa1175390:CDS 50.0%
! AGTGCTGGATCCAAAGTGTC+AGG + chr8_1:6710083-6710102 None:intergenic 50.0%
ACTTTACGATCCAATCGCCC+AGG + chr8_1:6710113-6710132 None:intergenic 50.0%
TCCTACTCTCCAAATCCGGA+AGG + chr8_1:6710145-6710164 None:intergenic 50.0%
GACATCCCTCTCACAGTTCA+TGG + chr8_1:6710195-6710214 None:intergenic 50.0%
TGTATGCTATCCGTGCCAGA+AGG - chr8_1:6710490-6710509 Msa1175390:intron 50.0%
CGAACAAGTTATGGCCTCTG+GGG + chr8_1:6710635-6710654 None:intergenic 50.0%
ACATGCCTTTCCCGCCTTAA+AGG + chr8_1:6711699-6711718 None:intergenic 50.0%
CCCAATCATCAGCTTACACG+TGG - chr8_1:6710945-6710964 Msa1175390:intron 50.0%
GCCACGTGTAAGCTGATGAT+TGG + chr8_1:6711667-6711686 None:intergenic 50.0%
! CATGGCCATGGGTTGAAGAA+TGG + chr8_1:6711090-6711109 None:intergenic 50.0%
CATTCTTCAACCCATGGCCA+TGG - chr8_1:6711088-6711107 Msa1175390:intron 50.0%
! GGAACTTGTTCCATGGCCAT+GGG + chr8_1:6711101-6711120 None:intergenic 50.0%
! TGGAACTTGTTCCATGGCCA+TGG + chr8_1:6711102-6711121 None:intergenic 50.0%
GCCACGTGTAAGCTGATGAT+TGG - chr8_1:6711667-6711686 Msa1175390:intron 50.0%
CCCAATCATCAGCTTACACG+TGG + chr8_1:6710945-6710964 None:intergenic 50.0%
ACATGCCTTTCCCGCCTTAA+AGG - chr8_1:6711699-6711718 Msa1175390:intron 50.0%
GTTTAGCTGCACCAAGCCAG+TGG - chr8_1:6708487-6708506 Msa1175390:exon 55.0%
TTGAACGGGCCATCTACACG+AGG + chr8_1:6709592-6709611 None:intergenic 55.0%
GGATGGGGCCAGACATTATG+AGG + chr8_1:6709923-6709942 None:intergenic 55.0%
CGCCCAGGTCTTAATAGTGC+TGG + chr8_1:6710098-6710117 None:intergenic 55.0%
GCCTTCCGGATTTGGAGAGT+AGG - chr8_1:6710141-6710160 Msa1175390:intron 55.0%
! AGGAGTGTGTGCACTGAAGC+TGG - chr8_1:6710465-6710484 Msa1175390:intron 55.0%
GCAGCGCTTCAGTGCCTTTA+AGG - chr8_1:6710900-6710919 Msa1175390:intron 55.0%
! GCGCTTCAGTGCCTTTAAGG+CGG - chr8_1:6710903-6710922 Msa1175390:intron 55.0%
!! CGCTTCAGTGCCTTTAAGGC+GGG - chr8_1:6710904-6710923 Msa1175390:intron 55.0%
!! CAGTGCCTTTAAGGCGGGAA+AGG - chr8_1:6710909-6710928 Msa1175390:intron 55.0%
GGAAGGAGGTGAATTGCCTG+CGG + chr8_1:6711300-6711319 None:intergenic 55.0%
!! CAGTGCCTTTAAGGCGGGAA+AGG + chr8_1:6710909-6710928 None:intergenic 55.0%
!! CGCTTCAGTGCCTTTAAGGC+GGG + chr8_1:6710904-6710923 None:intergenic 55.0%
! GCGCTTCAGTGCCTTTAAGG+CGG + chr8_1:6710903-6710922 None:intergenic 55.0%
GCAGCGCTTCAGTGCCTTTA+AGG + chr8_1:6710900-6710919 None:intergenic 55.0%
CATCCTCGTCAAGAGGGCGA+GGG + chr8_1:6707330-6707349 None:intergenic 60.0%
TCATCCTCGTCAAGAGGGCG+AGG + chr8_1:6707331-6707350 None:intergenic 60.0%
CGGCTTTGCCCAAACTCCAC+TGG - chr8_1:6710233-6710252 Msa1175390:intron 60.0%
AGGAGGTGAATTGCCTGCGG+CGG + chr8_1:6711297-6711316 None:intergenic 60.0%
GAACCCTCGCCCTCTTGACG+AGG - chr8_1:6707324-6707343 Msa1175390:three_prime_UTR 65.0%
GCAGGAGGAGCAGCCTCTTC+AGG - chr8_1:6708536-6708555 Msa1175390:CDS 65.0%
! TGTTGGTGAGGGGGCTCGGA+TGG - chr8_1:6709474-6709493 Msa1175390:CDS 65.0%
! ACGGTGTCGGAGAGAGGCGA+CGG + chr8_1:6711260-6711279 None:intergenic 65.0%
! CGGAGGACGGTGTCGGAGAG+AGG + chr8_1:6711266-6711285 None:intergenic 70.0%
AATTGCCTGCGGCGGCGCAG+CGG + chr8_1:6711289-6711308 None:intergenic 70.0%
GCAGCGGCGGAGGACGGTGT+CGG + chr8_1:6711273-6711292 None:intergenic 75.0%
! GGCGGCGCAGCGGCGGAGGA+CGG + chr8_1:6711279-6711298 None:intergenic 85.0%
! TGCCTGCGGCGGCGCAGCGG+CGG + chr8_1:6711286-6711305 None:intergenic 85.0%
! CTGCGGCGGCGCAGCGGCGG+AGG + chr8_1:6711283-6711302 None:intergenic 90.0%
! CTCCGCCGCTGCGCCGCCGC+AGG - chr8_1:6711281-6711300 Msa1175390:intron 90.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 6707165 6711951 6707165 ID=Msa1175390;Name=Msa1175390
chr8_1 mRNA 6707165 6711951 6707165 ID=Msa1175390-mRNA-1;Parent=Msa1175390;Name=Msa1175390-mRNA-1;_AED=0.15;_eAED=0.15;_QI=97|1|1|1|0.81|0.66|12|491|426
chr8_1 exon 6707165 6707368 6707165 ID=Msa1175390-mRNA-1:exon:2464;Parent=Msa1175390-mRNA-1
chr8_1 exon 6708218 6708662 6708218 ID=Msa1175390-mRNA-1:exon:2463;Parent=Msa1175390-mRNA-1
chr8_1 exon 6708862 6709037 6708862 ID=Msa1175390-mRNA-1:exon:2462;Parent=Msa1175390-mRNA-1
chr8_1 exon 6709336 6709517 6709336 ID=Msa1175390-mRNA-1:exon:2461;Parent=Msa1175390-mRNA-1
chr8_1 exon 6709603 6709821 6709603 ID=Msa1175390-mRNA-1:exon:2460;Parent=Msa1175390-mRNA-1
chr8_1 exon 6709908 6710052 6709908 ID=Msa1175390-mRNA-1:exon:2459;Parent=Msa1175390-mRNA-1
chr8_1 exon 6710160 6710221 6710160 ID=Msa1175390-mRNA-1:exon:2458;Parent=Msa1175390-mRNA-1
chr8_1 exon 6710389 6710466 6710389 ID=Msa1175390-mRNA-1:exon:2457;Parent=Msa1175390-mRNA-1
chr8_1 exon 6710559 6710650 6710559 ID=Msa1175390-mRNA-1:exon:2456;Parent=Msa1175390-mRNA-1
chr8_1 exon 6710975 6711056 6710975 ID=Msa1175390-mRNA-1:exon:2455;Parent=Msa1175390-mRNA-1
chr8_1 exon 6711744 6711828 6711744 ID=Msa1175390-mRNA-1:exon:2454;Parent=Msa1175390-mRNA-1
chr8_1 exon 6711853 6711951 6711853 ID=Msa1175390-mRNA-1:exon:2453;Parent=Msa1175390-mRNA-1
chr8_1 five_prime_UTR 6711855 6711951 6711855 ID=Msa1175390-mRNA-1:five_prime_utr;Parent=Msa1175390-mRNA-1
chr8_1 CDS 6711853 6711854 6711853 ID=Msa1175390-mRNA-1:cds;Parent=Msa1175390-mRNA-1
chr8_1 CDS 6711744 6711828 6711744 ID=Msa1175390-mRNA-1:cds;Parent=Msa1175390-mRNA-1
chr8_1 CDS 6710975 6711056 6710975 ID=Msa1175390-mRNA-1:cds;Parent=Msa1175390-mRNA-1
chr8_1 CDS 6710559 6710650 6710559 ID=Msa1175390-mRNA-1:cds;Parent=Msa1175390-mRNA-1
chr8_1 CDS 6710389 6710466 6710389 ID=Msa1175390-mRNA-1:cds;Parent=Msa1175390-mRNA-1
chr8_1 CDS 6710160 6710221 6710160 ID=Msa1175390-mRNA-1:cds;Parent=Msa1175390-mRNA-1
chr8_1 CDS 6709908 6710052 6709908 ID=Msa1175390-mRNA-1:cds;Parent=Msa1175390-mRNA-1
chr8_1 CDS 6709603 6709821 6709603 ID=Msa1175390-mRNA-1:cds;Parent=Msa1175390-mRNA-1
chr8_1 CDS 6709336 6709517 6709336 ID=Msa1175390-mRNA-1:cds;Parent=Msa1175390-mRNA-1
chr8_1 CDS 6708862 6709037 6708862 ID=Msa1175390-mRNA-1:cds;Parent=Msa1175390-mRNA-1
chr8_1 CDS 6708505 6708662 6708505 ID=Msa1175390-mRNA-1:cds;Parent=Msa1175390-mRNA-1
chr8_1 three_prime_UTR 6708218 6708504 6708218 ID=Msa1175390-mRNA-1:three_prime_utr;Parent=Msa1175390-mRNA-1
chr8_1 three_prime_UTR 6707165 6707368 6707165 ID=Msa1175390-mRNA-1:three_prime_utr;Parent=Msa1175390-mRNA-1
Gene Sequence

>Msa1175390

ATGGCTATTGAACATGAAGATGAGCTCAAGGACGAGAAGAACCCTCGCCCTCTTGACGAGGATGATATCGCTCTCCTTAAAACCTACGGTTTGGGACCTTATTCCACAAGCATAAAAAAAGTGGAGAAGGAAATAAAAGATATGGCAAAGAAAGTGAATGACTTATGTGGTATCAAGGAGTCTGATACTGGTTTAGCTGCACCAAGCCAGTGGGATCTTGTTTCTGACAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGGTTGCAAGATGCACAAAAATTATAAATCCAAACTCTGAAGATGCTAAATATGTTATCAATGTGAAGCAGATTGCAAAGTTTGTTGTTGGGCTAGGAGACAAGGTTTCCCCCACTGACATAGAAGAAGGAATGCGTGTTGGTGTTGATAGAAACAAATATCAGATTCAGATTCCTTTGCCTCCAAAGATTGATCCTAGTGTTACAATGATGACAGTTGAAGAGAAACCGGATGTGACATATAATGATGTTGGTGGTTGTAAGGAACAGATTGAAAAGATGCGTGAAGTTGTTGAACTTCCCATGCTTCATCCAGAGAAATTTGTCAAACTTGGAATTGATCCTCCAAAGGGTGTGCTTTGTTATGGTCCACCAGGAACTGGCAAAACACTTTTGGCCAGGGCTGTTGCTAATAGAACTGATGCGTGTTTTATAAGGGTCATTGGAAGTGAACTTGTTCAGAAATATGTTGGTGAGGGGGCTCGGATGGTTCGTGAACTATTTCAGATGGCCCGTTCAAAAAAGGCGTGCATTGTGTTTTTTGATGAAGTTGATGCAATTGGAGGTGCACGATTTGATGATGGTGTTGGTGGTGATAATGAGGTTCAGCGTACTATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGAGGAAATATCAAAGTTTTGATGGCAACAAACAGGCCTGACACTTTGGATCCAGCACTATTAAGACCTGGGCGATTGGATCGTAAAGTTGAATTTGGCCTTCCGGATTTGGAGAGTAGGACACAGATATTCAAGATACACACAAGAACCATGAACTGTGAGAGGGATGTCCGTTTTGAACTTCTAGCTCGGCTTTGCCCAAACTCCACTGGAGCTGATATAAGGAGTGTGTGCACTGAAGCTGGTATGTATGCTATCCGTGCCAGAAGGAAGACTGTAACAGAGAAAGACTTCTTGGATGCAGTGAATAAAGTCATCAAAGGGTACCAGAAATTCAGTGCAACTCCCAAATATATGGTCTACAATTGA
Protein sequence

>Msa1175390

MAIEHEDELKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKVEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDVRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPKYMVYN*