Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125790 | A0A396JQ58 | 87.006 | 354 | 11 | 3 | 1 | 322 | 1 | 351 | 3.32e-175 | 500 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003220 | Msa0125790 | 0.841225 | 5.405344e-58 | -8.615850e-47 |
| Msa0003270 | Msa0125790 | 0.838263 | 3.190390e-57 | -8.615850e-47 |
| Msa0010770 | Msa0125790 | 0.810884 | 9.232920e-51 | -8.615850e-47 |
| Msa0012710 | Msa0125790 | 0.802479 | 5.500798e-49 | -8.615850e-47 |
| Msa0014830 | Msa0125790 | 0.819129 | 1.365463e-52 | -8.615850e-47 |
| Msa0016540 | Msa0125790 | 0.818672 | 1.734507e-52 | -8.615850e-47 |
| Msa0017320 | Msa0125790 | 0.803904 | 2.790023e-49 | -8.615850e-47 |
| Msa0029630 | Msa0125790 | 0.810633 | 1.046053e-50 | -8.615850e-47 |
| Msa0030300 | Msa0125790 | 0.841152 | 5.649714e-58 | -8.615850e-47 |
| Msa0033880 | Msa0125790 | 0.839646 | 1.399122e-57 | -8.615850e-47 |
| Msa0043500 | Msa0125790 | 0.814162 | 1.772796e-51 | -8.615850e-47 |
| Msa0043650 | Msa0125790 | 0.818005 | 2.456662e-52 | -8.615850e-47 |
| Msa0047250 | Msa0125790 | 0.820320 | 7.301681e-53 | -8.615850e-47 |
| Msa0047640 | Msa0125790 | 0.870568 | 1.322539e-66 | -8.615850e-47 |
| Msa0062350 | Msa0125790 | 0.806394 | 8.404422e-50 | -8.615850e-47 |
| Msa0074750 | Msa0125790 | 0.811689 | 6.175966e-51 | -8.615850e-47 |
| Msa0077900 | Msa0125790 | 0.912887 | 1.162805e-83 | -8.615850e-47 |
| Msa0079920 | Msa0125790 | 0.819792 | 9.641601e-53 | -8.615850e-47 |
| Msa0080250 | Msa0125790 | 0.837856 | 4.059867e-57 | -8.615850e-47 |
| Msa0081940 | Msa0125790 | 0.803374 | 3.594348e-49 | -8.615850e-47 |
| Msa0125790 | Msa0126840 | 0.803743 | 3.014004e-49 | -8.615850e-47 |
| Msa0125790 | Msa0126880 | 0.824419 | 8.154568e-54 | -8.615850e-47 |
| Msa0125790 | Msa0127040 | 0.821238 | 4.490826e-53 | -8.615850e-47 |
| Msa0125790 | Msa0127850 | 0.839966 | 1.154936e-57 | -8.615850e-47 |
| Msa0125790 | Msa0137510 | 0.801385 | 9.231770e-49 | -8.615850e-47 |
| Msa0125790 | Msa0142110 | 0.808323 | 3.276624e-50 | -8.615850e-47 |
| Msa0125790 | Msa0144420 | 0.822084 | 2.861541e-53 | -8.615850e-47 |
| Msa0125790 | Msa0144430 | 0.810797 | 9.641536e-51 | -8.615850e-47 |
| Msa0125790 | Msa0144780 | 0.805376 | 1.375350e-49 | -8.615850e-47 |
| Msa0125790 | Msa0146080 | 0.852827 | 3.574249e-61 | -8.615850e-47 |
| Msa0125790 | Msa0147980 | 0.805659 | 1.199431e-49 | -8.615850e-47 |
| Msa0125790 | Msa0171980 | 0.821167 | 4.662137e-53 | -8.615850e-47 |
| Msa0125790 | Msa0174000 | 0.855529 | 5.935125e-62 | -8.615850e-47 |
| Msa0125790 | Msa0202410 | 0.807202 | 5.670755e-50 | -8.615850e-47 |
| Msa0125790 | Msa0210260 | 0.827330 | 1.660814e-54 | -8.615850e-47 |
| Msa0125790 | Msa0237200 | 0.807476 | 4.962537e-50 | -8.615850e-47 |
| Msa0125790 | Msa0244970 | 0.827987 | 1.154592e-54 | -8.615850e-47 |
| Msa0125790 | Msa0244980 | 0.817306 | 3.531681e-52 | -8.615850e-47 |
| Msa0125790 | Msa0245430 | 0.840519 | 8.282421e-58 | -8.615850e-47 |
| Msa0125790 | Msa0245580 | 0.812750 | 3.622685e-51 | -8.615850e-47 |
| Msa0125790 | Msa0247060 | 0.836297 | 1.016294e-56 | -8.615850e-47 |
| Msa0125790 | Msa0265600 | 0.808090 | 3.673434e-50 | -8.615850e-47 |
| Msa0125790 | Msa0270210 | 0.802381 | 5.763500e-49 | -8.615850e-47 |
| Msa0125790 | Msa0273650 | 0.801897 | 7.247182e-49 | -8.615850e-47 |
| Msa0125790 | Msa0274970 | 0.808581 | 2.886253e-50 | -8.615850e-47 |
| Msa0125790 | Msa0280110 | 0.805619 | 1.223023e-49 | -8.615850e-47 |
| Msa0125790 | Msa0311720 | 0.803511 | 3.366835e-49 | -8.615850e-47 |
| Msa0125790 | Msa0315680 | 0.805872 | 1.082097e-49 | -8.615850e-47 |
| Msa0125790 | Msa0322900 | 0.804777 | 1.835846e-49 | -8.615850e-47 |
| Msa0125790 | Msa0324240 | 0.809821 | 1.565743e-50 | -8.615850e-47 |
| Msa0125790 | Msa0351330 | 0.809457 | 1.874705e-50 | -8.615850e-47 |
| Msa0125790 | Msa0363060 | 0.816477 | 5.420004e-52 | -8.615850e-47 |
| Msa0125790 | Msa0378970 | 0.823286 | 1.503463e-53 | -8.615850e-47 |
| Msa0125790 | Msa0382370 | 0.813501 | 2.479387e-51 | -8.615850e-47 |
| Msa0125790 | Msa0384670 | 0.807356 | 5.261134e-50 | -8.615850e-47 |
| Msa0125790 | Msa0390480 | 0.823838 | 1.116175e-53 | -8.615850e-47 |
| Msa0125790 | Msa0417770 | 0.805948 | 1.043230e-49 | -8.615850e-47 |
| Msa0125790 | Msa0430060 | 0.814896 | 1.219537e-51 | -8.615850e-47 |
| Msa0125790 | Msa0430150 | 0.812900 | 3.358984e-51 | -8.615850e-47 |
| Msa0125790 | Msa0431210 | 0.808671 | 2.762067e-50 | -8.615850e-47 |
| Msa0125790 | Msa0434570 | 0.819114 | 1.376319e-52 | -8.615850e-47 |
| Msa0125790 | Msa0434770 | 0.822176 | 2.724846e-53 | -8.615850e-47 |
| Msa0125790 | Msa0442310 | 0.819500 | 1.124390e-52 | -8.615850e-47 |
| Msa0125790 | Msa0474940 | 0.818905 | 1.535546e-52 | -8.615850e-47 |
| Msa0125790 | Msa0478580 | 0.826740 | 2.298269e-54 | -8.615850e-47 |
| Msa0125790 | Msa0480780 | 0.822337 | 2.499959e-53 | -8.615850e-47 |
| Msa0125790 | Msa0491000 | 0.808901 | 2.465798e-50 | -8.615850e-47 |
| Msa0125790 | Msa0513370 | 0.803867 | 2.839548e-49 | -8.615850e-47 |
| Msa0125790 | Msa0516120 | 0.805269 | 1.448509e-49 | -8.615850e-47 |
| Msa0125790 | Msa0531250 | 0.815976 | 7.015506e-52 | -8.615850e-47 |
| Msa0125790 | Msa0534980 | 0.825301 | 5.051582e-54 | -8.615850e-47 |
| Msa0125790 | Msa0544170 | 0.803722 | 3.043176e-49 | -8.615850e-47 |
| Msa0125790 | Msa0544730 | 0.846283 | 2.393489e-59 | -8.615850e-47 |
| Msa0125790 | Msa0547990 | 0.814050 | 1.876709e-51 | -8.615850e-47 |
| Msa0125790 | Msa0549790 | 0.838029 | 3.665662e-57 | -8.615850e-47 |
| Msa0125790 | Msa0572750 | 0.810137 | 1.338613e-50 | -8.615850e-47 |
| Msa0125790 | Msa0593700 | 0.806222 | 9.132729e-50 | -8.615850e-47 |
| Msa0125790 | Msa0608270 | 0.835391 | 1.724027e-56 | -8.615850e-47 |
| Msa0125790 | Msa0618950 | 0.806903 | 6.562636e-50 | -8.615850e-47 |
| Msa0125790 | Msa0628420 | 0.801210 | 1.002648e-48 | -8.615850e-47 |
| Msa0125790 | Msa0640940 | 0.814544 | 1.459864e-51 | -8.615850e-47 |
| Msa0125790 | Msa0644030 | 0.803326 | 3.677781e-49 | -8.615850e-47 |
| Msa0125790 | Msa0648830 | 0.840938 | 6.430659e-58 | -8.615850e-47 |
| Msa0125790 | Msa0652690 | 0.815752 | 7.871641e-52 | -8.615850e-47 |
| Msa0125790 | Msa0656810 | 0.818622 | 1.780766e-52 | -8.615850e-47 |
| Msa0125790 | Msa0659550 | 0.810203 | 1.295636e-50 | -8.615850e-47 |
| Msa0125790 | Msa0659790 | 0.803430 | 3.498821e-49 | -8.615850e-47 |
| Msa0125790 | Msa0679360 | 0.803313 | 3.699936e-49 | -8.615850e-47 |
| Msa0125790 | Msa0705390 | 0.845179 | 4.773090e-59 | -8.615850e-47 |
| Msa0125790 | Msa0712560 | 0.820770 | 5.753176e-53 | -8.615850e-47 |
| Msa0125790 | Msa0743530 | 0.832549 | 8.873124e-56 | -8.615850e-47 |
| Msa0125790 | Msa0744100 | 0.806731 | 7.133101e-50 | -8.615850e-47 |
| Msa0125790 | Msa0756110 | 0.808171 | 3.531061e-50 | -8.615850e-47 |
| Msa0125790 | Msa0760770 | 0.801216 | 9.998551e-49 | -8.615850e-47 |
| Msa0125790 | Msa0789560 | 0.838303 | 3.116550e-57 | -8.615850e-47 |
| Msa0125790 | Msa0791090 | 0.819307 | 1.244068e-52 | -8.615850e-47 |
| Msa0125790 | Msa0822170 | 0.829166 | 5.992745e-55 | -8.615850e-47 |
| Msa0125790 | Msa0822180 | 0.805858 | 1.089376e-49 | -8.615850e-47 |
| Msa0125790 | Msa0825270 | 0.817155 | 3.819232e-52 | -8.615850e-47 |
| Msa0125790 | Msa0831100 | 0.800204 | 1.608641e-48 | -8.615850e-47 |
| Msa0125790 | Msa0870650 | 0.814359 | 1.603472e-51 | -8.615850e-47 |
| Msa0125790 | Msa0883520 | 0.850521 | 1.608943e-60 | -8.615850e-47 |
| Msa0125790 | Msa0907850 | 0.822779 | 1.973365e-53 | -8.615850e-47 |
| Msa0125790 | Msa0945240 | 0.825683 | 4.100445e-54 | -8.615850e-47 |
| Msa0125790 | Msa0969330 | 0.804676 | 1.926961e-49 | -8.615850e-47 |
| Msa0125790 | Msa0985220 | 0.803518 | 3.354711e-49 | -8.615850e-47 |
| Msa0125790 | Msa1017510 | 0.815290 | 9.974615e-52 | -8.615850e-47 |
| Msa0125790 | Msa1027250 | 0.813201 | 2.885343e-51 | -8.615850e-47 |
| Msa0125790 | Msa1027300 | 0.801283 | 9.687212e-49 | -8.615850e-47 |
| Msa0125790 | Msa1068390 | 0.817359 | 3.435009e-52 | -8.615850e-47 |
| Msa0125790 | Msa1070390 | 0.809937 | 1.478383e-50 | -8.615850e-47 |
| Msa0125790 | Msa1072600 | 0.856151 | 3.904804e-62 | -8.615850e-47 |
| Msa0125790 | Msa1074110 | 0.832206 | 1.078755e-55 | -8.615850e-47 |
| Msa0125790 | Msa1089270 | 0.800287 | 1.547192e-48 | -8.615850e-47 |
| Msa0125790 | Msa1098890 | 0.821935 | 3.098560e-53 | -8.615850e-47 |
| Msa0125790 | Msa1109780 | -0.801809 | 7.555695e-49 | -8.615850e-47 |
| Msa0125790 | Msa1123350 | 0.841708 | 4.034337e-58 | -8.615850e-47 |
| Msa0125790 | Msa1127430 | 0.846811 | 1.717822e-59 | -8.615850e-47 |
| Msa0125790 | Msa1127540 | 0.819404 | 1.182289e-52 | -8.615850e-47 |
| Msa0125790 | Msa1154490 | 0.805267 | 1.450006e-49 | -8.615850e-47 |
| Msa0125790 | Msa1158230 | 0.800479 | 1.413520e-48 | -8.615850e-47 |
| Msa0125790 | Msa1162080 | 0.823338 | 1.461289e-53 | -8.615850e-47 |
| Msa0125790 | Msa1163870 | 0.803206 | 3.893653e-49 | -8.615850e-47 |
| Msa0125790 | Msa1175390 | 0.802536 | 5.355035e-49 | -8.615850e-47 |
| Msa0125790 | Msa1201640 | 0.831291 | 1.814518e-55 | -8.615850e-47 |
| Msa0125790 | Msa1205480 | 0.801564 | 8.485204e-49 | -8.615850e-47 |
| Msa0125790 | Msa1206650 | 0.840088 | 1.073245e-57 | -8.615850e-47 |
| Msa0125790 | Msa1227320 | 0.807494 | 4.917848e-50 | -8.615850e-47 |
| Msa0125790 | Msa1254620 | 0.827152 | 1.831705e-54 | -8.615850e-47 |
| Msa0125790 | Msa1257070 | 0.808942 | 2.417015e-50 | -8.615850e-47 |
| Msa0125790 | Msa1276970 | 0.846553 | 2.020810e-59 | -8.615850e-47 |
| Msa0125790 | Msa1277360 | 0.804321 | 2.285228e-49 | -8.615850e-47 |
| Msa0125790 | Msa1298100 | 0.821236 | 4.493829e-53 | -8.615850e-47 |
| Msa0125790 | Msa1304810 | 0.807579 | 4.718308e-50 | -8.615850e-47 |
| Msa0125790 | Msa1336040 | 0.821211 | 4.554326e-53 | -8.615850e-47 |
| Msa0125790 | Msa1344310 | 0.808085 | 3.682519e-50 | -8.615850e-47 |
| Msa0125790 | Msa1356610 | 0.844633 | 6.697922e-59 | -8.615850e-47 |
| Msa0125790 | Msa1366550 | 0.807013 | 6.217781e-50 | -8.615850e-47 |
| Msa0125790 | Msa1382020 | 0.805093 | 1.576570e-49 | -8.615850e-47 |
| Msa0125790 | Msa1385810 | 0.824461 | 7.973016e-54 | -8.615850e-47 |
| Msa0125790 | Msa1393820 | 0.811189 | 7.930503e-51 | -8.615850e-47 |
| Msa0125790 | Msa1409260 | 0.819724 | 9.994153e-53 | -8.615850e-47 |
| Msa0125790 | Msa1411950 | 0.824087 | 9.761912e-54 | -8.615850e-47 |
| Msa0125790 | Msa1438520 | 0.800079 | 1.705361e-48 | -8.615850e-47 |
| Msa0125790 | Msa1443310 | 0.800670 | 1.292797e-48 | -8.615850e-47 |
| Msa0125790 | Msa1450720 | 0.832064 | 1.169809e-55 | -8.615850e-47 |
| Msa0125790 | Msa1458810 | 0.811535 | 6.669779e-51 | -8.615850e-47 |
| Msa0125790 | Msa1462470 | 0.814471 | 1.514623e-51 | -8.615850e-47 |
| Msa0125790 | Msa1463030 | 0.807192 | 5.698690e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125790 | MtrunA17_Chr1g0187991 | 87.006 | 354 | 11 | 3 | 1 | 322 | 1 | 351 | 6.40e-179 | 500 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125790 | AT1G04230.1 | 53.584 | 293 | 90 | 6 | 1 | 252 | 1 | 288 | 8.63e-75 | 234 |
| Msa0125790 | AT1G04230.2 | 53.584 | 293 | 89 | 7 | 1 | 252 | 1 | 287 | 7.16e-73 | 229 |
| Msa0125790 | AT5G43720.1 | 54.730 | 296 | 87 | 7 | 1 | 254 | 1 | 291 | 2.91e-69 | 220 |
Find 90 sgRNAs with CRISPR-Local
Find 323 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTCTGTTTAGATGAATTT+TGG | 0.177579 | 1_3:+54429219 | None:intergenic |
| CAGTGAGGATGACGGTCTTC+TGG | 0.295263 | 1_3:-54429682 | Msa0125790:CDS |
| AACGGGTGGTTTGAATTTCT+TGG | 0.296653 | 1_3:+54432401 | None:intergenic |
| GAGCAGGCTTCTAGTGCTTC+TGG | 0.304491 | 1_3:-54429474 | Msa0125790:CDS |
| TGCGTTCGGCGGATCGGATT+TGG | 0.330713 | 1_3:+54432367 | None:intergenic |
| AGAAGCACAGGTGCAGAAAC+TGG | 0.342086 | 1_3:-54432240 | Msa0125790:CDS |
| CGTTCAAAACCTTCTTCAAT+AGG | 0.346677 | 1_3:+54427638 | None:intergenic |
| CAAACAAGTTGTCAAGGTTT+GGG | 0.346944 | 1_3:-54429250 | Msa0125790:CDS |
| TCAAACAAGTTGTCAAGGTT+TGG | 0.348252 | 1_3:-54429251 | Msa0125790:CDS |
| GAGCTGGTCCCTGCTCTTGA+AGG | 0.354743 | 1_3:+54429089 | None:intergenic |
| GTAAGGGAACCCTCAAGATC+AGG | 0.387740 | 1_3:-54429140 | Msa0125790:CDS |
| GTAAGGGAACCCTCAAGATC+AGG | 0.395899 | 1_3:-54429056 | Msa0125790:CDS |
| TTATCTGTGGCTGCTGCAAC+TGG | 0.397239 | 1_3:-54430650 | Msa0125790:CDS |
| AACCTTGACAACTTGTTTGA+AGG | 0.398124 | 1_3:+54429254 | None:intergenic |
| GAGATAGTTGACAAGCGAAA+TGG | 0.426687 | 1_3:-54430698 | Msa0125790:CDS |
| TTGTCAAGGTTTGGGTCTGC+AGG | 0.427670 | 1_3:-54429242 | Msa0125790:CDS |
| TACCTTTCGGAGCATGCGTT+CGG | 0.429821 | 1_3:+54432353 | None:intergenic |
| AGCGCCATGGCTCACGGCGG+CGG | 0.433460 | 1_3:-54432480 | Msa0125790:exon |
| TTGTATTGGTTGCAGAGAGC+AGG | 0.434704 | 1_3:-54429490 | Msa0125790:intron |
| GCTTCATCACTAGAACTTCC+AGG | 0.434881 | 1_3:+54429633 | None:intergenic |
| GAGCTGGTCCCTGATCTTGA+GGG | 0.447815 | 1_3:+54429131 | None:intergenic |
| ACCTTGACAACTTGTTTGAA+GGG | 0.465270 | 1_3:+54429255 | None:intergenic |
| GCAACTGGCAAGGATTTAGA+AGG | 0.471858 | 1_3:-54430635 | Msa0125790:intron |
| ATGACTGGTCCCTGATCTTG+AGG | 0.475131 | 1_3:+54429046 | None:intergenic |
| GTAAGGGAACCTTCAAGAGC+AGG | 0.475623 | 1_3:-54429098 | Msa0125790:CDS |
| GCAGCTCAGACTTCAGAGTA+AGG | 0.479250 | 1_3:-54429157 | Msa0125790:CDS |
| AGATAGTTGACAAGCGAAAT+GGG | 0.480235 | 1_3:-54430697 | Msa0125790:CDS |
| TGAGCTGGTCCCTGATCTTG+AGG | 0.482216 | 1_3:+54429130 | None:intergenic |
| AGAAGATTAAGTTCTTTGAG+AGG | 0.482582 | 1_3:-54432148 | Msa0125790:CDS |
| TTGTTTGAAGGGCGAGGAGG+AGG | 0.487851 | 1_3:+54429266 | None:intergenic |
| TTTGCTGTTTGATGCGTAGC+GGG | 0.489522 | 1_3:+54429181 | None:intergenic |
| TGACTGGTCCCTGATCTTGA+GGG | 0.490656 | 1_3:+54429047 | None:intergenic |
| AGGAGGAGGCATCAAAGCTC+TGG | 0.493369 | 1_3:+54429280 | None:intergenic |
| TGGTTTGAATTTCTTGGCGG+TGG | 0.495559 | 1_3:+54432407 | None:intergenic |
| CCTTACTCTGAAGTCTGAGC+TGG | 0.495940 | 1_3:+54429115 | None:intergenic |
| GACACCGCCGCCGTGAGCCA+TGG | 0.496302 | 1_3:+54432476 | None:intergenic |
| CCAGCTCAGACTTTAGAGTA+AGG | 0.498575 | 1_3:-54429073 | Msa0125790:CDS |
| CCAGCTCAGACTTCAGAGTA+AGG | 0.500871 | 1_3:-54429115 | Msa0125790:CDS |
| GCTTCTGGAAAAGCTGTGTC+TGG | 0.504121 | 1_3:-54429459 | Msa0125790:CDS |
| AGCGGAGGTTAGAGAAGCAC+AGG | 0.504954 | 1_3:-54432252 | Msa0125790:CDS |
| ACAATCAGAAAACCTAATCA+AGG | 0.527811 | 1_3:-54432524 | Msa0125790:five_prime_UTR |
| CACAAGCCTCGGACAGGTCA+TGG | 0.529184 | 1_3:-54428993 | Msa0125790:CDS |
| GATGCTCACAAGCCTCGGAC+AGG | 0.531903 | 1_3:-54428999 | Msa0125790:CDS |
| GGGTGGTTTGAATTTCTTGG+CGG | 0.533885 | 1_3:+54432404 | None:intergenic |
| GGAGCATGCGTTCGGCGGAT+CGG | 0.538352 | 1_3:+54432361 | None:intergenic |
| ACTCTGATGCTCACAAGCCT+CGG | 0.541640 | 1_3:-54428953 | Msa0125790:CDS |
| CTATTGCTTTCTTCATCTCG+AGG | 0.546011 | 1_3:+54432547 | None:intergenic |
| ACTCTGATGCTCACAAGCCT+CGG | 0.546671 | 1_3:-54429004 | Msa0125790:CDS |
| GAAATAGAATATCCCTCCGT+CGG | 0.547155 | 1_3:-54432573 | None:intergenic |
| ATCTCGAGGAACCCGACGGA+GGG | 0.548194 | 1_3:+54432561 | None:intergenic |
| GCCCTTCAAACAAGTTGTCA+AGG | 0.549834 | 1_3:-54429256 | Msa0125790:CDS |
| CCTTACTCTAAAGTCTGAGC+TGG | 0.551248 | 1_3:+54429073 | None:intergenic |
| CTTCATCTCGAGGAACCCGA+CGG | 0.555144 | 1_3:+54432557 | None:intergenic |
| GAAAACAGCGCCATGGCTCA+CGG | 0.561570 | 1_3:-54432486 | Msa0125790:exon |
| GACAACTTGTTTGAAGGGCG+AGG | 0.563882 | 1_3:+54429260 | None:intergenic |
| AAATAGAATATCCCTCCGTC+GGG | 0.568977 | 1_3:-54432572 | None:intergenic |
| TGTGCTTCTCTAACCTCCGC+TGG | 0.571924 | 1_3:+54432254 | None:intergenic |
| CGCCGAACGCATGCTCCGAA+AGG | 0.581830 | 1_3:-54432355 | Msa0125790:intron |
| CTTTCGGAGCATGCGTTCGG+CGG | 0.585097 | 1_3:+54432356 | None:intergenic |
| AGGCTTGTGAGCATCAGAGT+TGG | 0.585984 | 1_3:+54428956 | None:intergenic |
| AGGCTTGTGAGCATCAGAGT+TGG | 0.585984 | 1_3:+54429007 | None:intergenic |
| TCAAGATCAGGGACCAGTCA+TGG | 0.587180 | 1_3:-54429044 | Msa0125790:CDS |
| TAAGGGAACCCTCAAGATCA+GGG | 0.588906 | 1_3:-54429055 | Msa0125790:CDS |
| TAAGGGAACCCTCAAGATCA+GGG | 0.588906 | 1_3:-54429139 | Msa0125790:CDS |
| TGTGGCTGCTGCAACTGGCA+AGG | 0.589859 | 1_3:-54430645 | Msa0125790:CDS |
| CGGCGGGGTTGACCCTCTCG+CGG | 0.596977 | 1_3:+54432445 | None:intergenic |
| TGTCAACAAGCGCCGCGAGA+GGG | 0.597156 | 1_3:-54432457 | Msa0125790:CDS |
| CAGCTCAGACTTCAGAGTAA+GGG | 0.598053 | 1_3:-54429156 | Msa0125790:CDS |
| TAAGGGAACCTTCAAGAGCA+GGG | 0.607477 | 1_3:-54429097 | Msa0125790:CDS |
| GCTTAGACTACTACCATGAC+TGG | 0.607754 | 1_3:+54429031 | None:intergenic |
| GTGTCAACAAGCGCCGCGAG+AGG | 0.608335 | 1_3:-54432458 | Msa0125790:CDS |
| ATTTAGTGGAACTGATGATG+CGG | 0.619368 | 1_3:-54430720 | Msa0125790:intron |
| CAGCTCAGACTTTAGAGTAA+GGG | 0.622748 | 1_3:-54429072 | Msa0125790:CDS |
| TATTCACACTCGCCTCGCTG+TGG | 0.635745 | 1_3:-54432195 | Msa0125790:CDS |
| AACTTGTTTGAAGGGCGAGG+AGG | 0.639014 | 1_3:+54429263 | None:intergenic |
| ATTGCAGAATTTACCAGCGG+AGG | 0.639111 | 1_3:-54432267 | Msa0125790:intron |
| CAGCTCAGACTTCAGAGTAA+GGG | 0.639698 | 1_3:-54429114 | Msa0125790:CDS |
| GGAAGCACTGAAGAAACAGC+AGG | 0.640824 | 1_3:-54432219 | Msa0125790:CDS |
| TTAGGTCTTCTCTTTCTCCG+AGG | 0.650734 | 1_3:+54428936 | None:intergenic |
| TACTACCGAAAACAGCGCCA+TGG | 0.654784 | 1_3:-54432493 | Msa0125790:exon |
| AATTGACAGACAAAAGTACC+AGG | 0.657399 | 1_3:-54429596 | Msa0125790:intron |
| GATTGAAGAGAGGTTATCTG+TGG | 0.668869 | 1_3:-54430663 | Msa0125790:CDS |
| GAGACTGGCAGTGAGGATGA+CGG | 0.672293 | 1_3:-54429690 | Msa0125790:CDS |
| CATCTCGAGGAACCCGACGG+AGG | 0.680902 | 1_3:+54432560 | None:intergenic |
| AACAGCGCCATGGCTCACGG+CGG | 0.693190 | 1_3:-54432483 | Msa0125790:exon |
| CTACTGCCATGACCTGTCCG+AGG | 0.693261 | 1_3:+54428987 | None:intergenic |
| ATATCTTACGTTCCACAGCG+AGG | 0.697849 | 1_3:+54432183 | None:intergenic |
| TGAATTGCAGAATTTACCAG+CGG | 0.705694 | 1_3:-54432270 | Msa0125790:intron |
| TGCGCAAACAGATTGAAGAG+AGG | 0.706610 | 1_3:-54430673 | Msa0125790:CDS |
| TGTTACAGAGACTGGCAGTG+AGG | 0.712205 | 1_3:-54429697 | Msa0125790:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTGAATTTATTTTATAAAT+AGG | + | chr1_3:54431562-54431581 | None:intergenic | 10.0% |
| !! | ACTTAAATATTAAATAAAAC+AGG | - | chr1_3:54431992-54432011 | Msa0125790:intron | 10.0% |
| !! | AGCAAGTATAAATAAATATA+AGG | + | chr1_3:54428778-54428797 | None:intergenic | 15.0% |
| !!! | TTTTGTCTTTTAAGTTTTTA+AGG | - | chr1_3:54429020-54429039 | Msa0125790:CDS | 15.0% |
| !!! | TTTGTATTGATTTTAGAATT+AGG | - | chr1_3:54429755-54429774 | Msa0125790:intron | 15.0% |
| !!! | TTGTATTGATTTTAGAATTA+GGG | - | chr1_3:54429756-54429775 | Msa0125790:intron | 15.0% |
| !! | AATAAACTGAAAATAGTTTA+TGG | + | chr1_3:54429877-54429896 | None:intergenic | 15.0% |
| !! | TAAAGAAAGATGAAAAATTA+GGG | + | chr1_3:54430118-54430137 | None:intergenic | 15.0% |
| !!! | TTCTTTGTAAAATTATTTTG+TGG | - | chr1_3:54430141-54430160 | Msa0125790:intron | 15.0% |
| !!! | TCAAAATTAAAAGCTTTTAA+TGG | + | chr1_3:54431467-54431486 | None:intergenic | 15.0% |
| !!! | ATTAAATTCCAATTTGTTTA+TGG | - | chr1_3:54432474-54432493 | Msa0125790:CDS | 15.0% |
| !!! | TTTATTTCTATAAGCTCTTA+AGG | - | chr1_3:54428618-54428637 | Msa0125790:intron | 20.0% |
| !!! | ATAAATATAAGGCTTTGTTT+TGG | + | chr1_3:54428767-54428786 | None:intergenic | 20.0% |
| !!! | AAGACATATTTTTCATTCTT+GGG | + | chr1_3:54428862-54428881 | None:intergenic | 20.0% |
| !!! | AAAGACATATTTTTCATTCT+TGG | + | chr1_3:54428863-54428882 | None:intergenic | 20.0% |
| !!! | GTTTTTGACAAATTATATCT+AGG | - | chr1_3:54429174-54429193 | Msa0125790:CDS | 20.0% |
| !! | AACTTATAACTTATATGATG+AGG | - | chr1_3:54429342-54429361 | Msa0125790:intron | 20.0% |
| !! | ACTTATAACTTATATGATGA+GGG | - | chr1_3:54429343-54429362 | Msa0125790:intron | 20.0% |
| !!! | AAATATGTTCCTTTATTTAG+TGG | - | chr1_3:54429487-54429506 | Msa0125790:intron | 20.0% |
| !!! | ATTAAGTTGTTTATGTAAAC+AGG | - | chr1_3:54430040-54430059 | Msa0125790:intron | 20.0% |
| !!! | TTAAGTTGTTTATGTAAACA+GGG | - | chr1_3:54430041-54430060 | Msa0125790:intron | 20.0% |
| !! | AAAGAAAGATGAAAAATTAG+GGG | + | chr1_3:54430117-54430136 | None:intergenic | 20.0% |
| !! | GTAAAGAAAGATGAAAAATT+AGG | + | chr1_3:54430119-54430138 | None:intergenic | 20.0% |
| !!! | TTTATCACTTTCTTTTATCT+TGG | - | chr1_3:54430281-54430300 | Msa0125790:intron | 20.0% |
| !!! | AGTTATCTCAATAAGTTTTT+TGG | - | chr1_3:54430675-54430694 | Msa0125790:CDS | 20.0% |
| !!! | AGTGGATAAATTTTTTGTAT+TGG | - | chr1_3:54430717-54430736 | Msa0125790:CDS | 20.0% |
| !! | TAAACTAAAAGATATGAGAA+AGG | + | chr1_3:54431611-54431630 | None:intergenic | 20.0% |
| !!! | TTTCAATTTTGCATTTAAAG+TGG | - | chr1_3:54431637-54431656 | Msa0125790:intron | 20.0% |
| !! | CACATTCAAATAGTTATTAT+AGG | + | chr1_3:54431723-54431742 | None:intergenic | 20.0% |
| !! | CTATAATAACTATTTGAATG+TGG | - | chr1_3:54431721-54431740 | Msa0125790:intron | 20.0% |
| !! | ACAACAATAAATTGGAAATA+AGG | + | chr1_3:54431881-54431900 | None:intergenic | 20.0% |
| !! | ATAAATGTGCATTACAATTA+GGG | + | chr1_3:54432194-54432213 | None:intergenic | 20.0% |
| !! | AATAAATGTGCATTACAATT+AGG | + | chr1_3:54432195-54432214 | None:intergenic | 20.0% |
| !!! | ATTTAATTTAAAGTAACCCA+AGG | + | chr1_3:54432461-54432480 | None:intergenic | 20.0% |
| !! | TATTATTGTATTACCAGATA+TGG | - | chr1_3:54432532-54432551 | Msa0125790:five_prime_UTR | 20.0% |
| ! | GAGAATAAATAACCGAATTA+GGG | + | chr1_3:54427924-54427943 | None:intergenic | 25.0% |
| ! | AGAGAATAAATAACCGAATT+AGG | + | chr1_3:54427925-54427944 | None:intergenic | 25.0% |
| ! | ACAAGATCTTCAATATGTTA+TGG | - | chr1_3:54428200-54428219 | Msa0125790:intron | 25.0% |
| ! | AAATTATACCTATGCTTGTT+TGG | - | chr1_3:54428251-54428270 | Msa0125790:intron | 25.0% |
| !! | AATAAGTTGAAAACAGCTTA+AGG | + | chr1_3:54428358-54428377 | None:intergenic | 25.0% |
| ! | ATTAAGCTGTATATCTGAAT+AGG | - | chr1_3:54428473-54428492 | Msa0125790:intron | 25.0% |
| ! | TTAAGCTGTATATCTGAATA+GGG | - | chr1_3:54428474-54428493 | Msa0125790:intron | 25.0% |
| !! | GAGTTTATGGAAACATTTTA+TGG | - | chr1_3:54428570-54428589 | Msa0125790:intron | 25.0% |
| ! | TCTTATAGCCTATATGAAAA+TGG | - | chr1_3:54428657-54428676 | Msa0125790:intron | 25.0% |
| !! | AAAGCAAACCATTTTCATAT+AGG | + | chr1_3:54428668-54428687 | None:intergenic | 25.0% |
| !! | AAATATGTCTTTCAGTGTTT+TGG | - | chr1_3:54428871-54428890 | Msa0125790:intron | 25.0% |
| !! | AATATGTCTTTCAGTGTTTT+GGG | - | chr1_3:54428872-54428891 | Msa0125790:intron | 25.0% |
| ! | GGTGACAAAAAATATGTTTA+GGG | - | chr1_3:54428893-54428912 | Msa0125790:intron | 25.0% |
| ! | AAATTATATCTAGGTCTGTT+TGG | - | chr1_3:54429183-54429202 | Msa0125790:CDS | 25.0% |
| ! | ATTAGTTGAAAACAGCTTAT+GGG | + | chr1_3:54429289-54429308 | None:intergenic | 25.0% |
| ! | AATTAGTTGAAAACAGCTTA+TGG | + | chr1_3:54429290-54429309 | None:intergenic | 25.0% |
| ! | ATTAAGCTGTTTATCTAAAC+AGG | - | chr1_3:54429376-54429395 | Msa0125790:intron | 25.0% |
| ! | TTAAGCTGTTTATCTAAACA+GGG | - | chr1_3:54429377-54429396 | Msa0125790:intron | 25.0% |
| !! | TTGTTGTTGATGTATTATGT+TGG | - | chr1_3:54429652-54429671 | Msa0125790:CDS | 25.0% |
| !!! | TTTTAGAATTAGGGTTTGTT+TGG | - | chr1_3:54429765-54429784 | Msa0125790:intron | 25.0% |
| !!! | TAAAATAAAGCTGTTTTCGT+AGG | + | chr1_3:54429923-54429942 | None:intergenic | 25.0% |
| ! | ATCATTAGTGTAAATGCTAT+AGG | - | chr1_3:54429981-54430000 | Msa0125790:intron | 25.0% |
| !! | CTATGTGACTTTACAATTTT+TGG | - | chr1_3:54430195-54430214 | Msa0125790:intron | 25.0% |
| ! | TAAACACAGAATATTAAGGA+AGG | + | chr1_3:54430265-54430284 | None:intergenic | 25.0% |
| ! | GTGATAAACACAGAATATTA+AGG | + | chr1_3:54430269-54430288 | None:intergenic | 25.0% |
| ! | AATAGAAACATTATATGCAG+GGG | + | chr1_3:54430342-54430361 | None:intergenic | 25.0% |
| ! | CAATAGAAACATTATATGCA+GGG | + | chr1_3:54430343-54430362 | None:intergenic | 25.0% |
| !! | TTGTTGACATTTTATCAAAC+AGG | + | chr1_3:54430491-54430510 | None:intergenic | 25.0% |
| ! | ATTATATCGATGAAAAGTAG+TGG | - | chr1_3:54430699-54430718 | Msa0125790:CDS | 25.0% |
| ! | ATAATGTGTGACTATCTATT+CGG | + | chr1_3:54430872-54430891 | None:intergenic | 25.0% |
| !! | ATCTCTGTTTAGATGAATTT+TGG | + | chr1_3:54431005-54431024 | None:intergenic | 25.0% |
| ! | TAATTACCATTCATTCTAAC+TGG | - | chr1_3:54431375-54431394 | Msa0125790:intron | 25.0% |
| !!! | AAAGTTGAGACTTTTTTAAG+TGG | - | chr1_3:54431425-54431444 | Msa0125790:intron | 25.0% |
| ! | TCACTTATGATTGTATGATA+AGG | - | chr1_3:54431491-54431510 | Msa0125790:intron | 25.0% |
| ! | AAAAGATATGAGAAAGGTAA+GGG | + | chr1_3:54431605-54431624 | None:intergenic | 25.0% |
| ! | TAAAAGATATGAGAAAGGTA+AGG | + | chr1_3:54431606-54431625 | None:intergenic | 25.0% |
| ! | TTATTATAGGCATTTACACA+TGG | + | chr1_3:54431710-54431729 | None:intergenic | 25.0% |
| !! | TTTCCAATTTATTGTTGTTG+TGG | - | chr1_3:54431883-54431902 | Msa0125790:intron | 25.0% |
| !!! | TCTTACAATTACGTTTTAAC+TGG | - | chr1_3:54432292-54432311 | Msa0125790:intron | 25.0% |
| !!! | AGATTAATAGCTTTTGACTA+TGG | - | chr1_3:54432420-54432439 | Msa0125790:CDS | 25.0% |
| !!! | GATTAATAGCTTTTGACTAT+GGG | - | chr1_3:54432421-54432440 | Msa0125790:CDS | 25.0% |
| !!! | ATTAATAGCTTTTGACTATG+GGG | - | chr1_3:54432422-54432441 | Msa0125790:CDS | 25.0% |
| ACAATCAGAAAACCTAATCA+AGG | - | chr1_3:54427697-54427716 | Msa0125790:intron | 30.0% | |
| ! | AGTATTTTGCTTCCTTGATT+AGG | + | chr1_3:54427712-54427731 | None:intergenic | 30.0% |
| !!! | ATTTGGTTTTTGAGAGAAAC+GGG | + | chr1_3:54427840-54427859 | None:intergenic | 30.0% |
| !!! | GATTTGGTTTTTGAGAGAAA+CGG | + | chr1_3:54427841-54427860 | None:intergenic | 30.0% |
| AGAAGATTAAGTTCTTTGAG+AGG | - | chr1_3:54428073-54428092 | Msa0125790:intron | 30.0% | |
| TTGAGAGGAGAAAAATTGAA+CGG | - | chr1_3:54428088-54428107 | Msa0125790:intron | 30.0% | |
| GCTTATTCGAGCTTATTTAT+TGG | - | chr1_3:54428278-54428297 | Msa0125790:intron | 30.0% | |
| !! | CTTATTTTCATAAGCTCTCT+AGG | - | chr1_3:54428372-54428391 | Msa0125790:intron | 30.0% |
| TAAGCTGTATATCTGAATAG+GGG | - | chr1_3:54428475-54428494 | Msa0125790:intron | 30.0% | |
| AAACTGAAAAACACAGCTTA+TGG | + | chr1_3:54428601-54428620 | None:intergenic | 30.0% | |
| ! | ACTTGCTGCTGTAAATAAAT+AGG | - | chr1_3:54428791-54428810 | Msa0125790:intron | 30.0% |
| GGGTGACAAAAAATATGTTT+AGG | - | chr1_3:54428892-54428911 | Msa0125790:intron | 30.0% | |
| ! | AAAATATGTTTAGGGTCTGT+CGG | - | chr1_3:54428901-54428920 | Msa0125790:intron | 30.0% |
| ! | AGGATAGCTTATAGCTTTTA+TGG | - | chr1_3:54429040-54429059 | Msa0125790:CDS | 30.0% |
| TAAGCTGTTTATCTAAACAG+GGG | - | chr1_3:54429378-54429397 | Msa0125790:intron | 30.0% | |
| GGAACATATTTCTCATTCTT+GGG | + | chr1_3:54429478-54429497 | None:intergenic | 30.0% | |
| AGGAACATATTTCTCATTCT+TGG | + | chr1_3:54429479-54429498 | None:intergenic | 30.0% | |
| TCATCAGTTCCACTAAATAA+AGG | + | chr1_3:54429499-54429518 | None:intergenic | 30.0% | |
| !! | TTTATTTTCATAAGCTCTCC+AGG | - | chr1_3:54429891-54429910 | Msa0125790:intron | 30.0% |
| ! | ATCAATTGATTGAAAGTGCA+GGG | + | chr1_3:54430233-54430252 | None:intergenic | 30.0% |
| ! | CACTTTCTTTTATCTTGGTT+TGG | - | chr1_3:54430286-54430305 | Msa0125790:intron | 30.0% |
| GCAATAGAAACATTATATGC+AGG | + | chr1_3:54430344-54430363 | None:intergenic | 30.0% | |
| AAACCAAGCACTTGAAATAA+GGG | + | chr1_3:54430373-54430392 | None:intergenic | 30.0% | |
| AAAACCAAGCACTTGAAATA+AGG | + | chr1_3:54430374-54430393 | None:intergenic | 30.0% | |
| ! | TGACATTTTATCAAACAGGA+AGG | + | chr1_3:54430487-54430506 | None:intergenic | 30.0% |
| !!! | GATGATGATTTTTTTCTTCC+TGG | - | chr1_3:54430570-54430589 | Msa0125790:intron | 30.0% |
| !!! | AGCAAAGATGTTTTAGTACT+TGG | - | chr1_3:54430650-54430669 | Msa0125790:CDS | 30.0% |
| !!! | GCAAAGATGTTTTAGTACTT+GGG | - | chr1_3:54430651-54430670 | Msa0125790:CDS | 30.0% |
| ATTGCTAGTTGTTACTCTTA+CGG | + | chr1_3:54430818-54430837 | None:intergenic | 30.0% | |
| AAATCTGCCTCTACAAAAAT+GGG | + | chr1_3:54430918-54430937 | None:intergenic | 30.0% | |
| AAGTTTCCAGTTAGAATGAA+TGG | + | chr1_3:54431384-54431403 | None:intergenic | 30.0% | |
| TAAGGATTTACTCTTATCAC+TGG | - | chr1_3:54431509-54431528 | Msa0125790:intron | 30.0% | |
| AATAGGAATGCATTTCAAGA+CGG | + | chr1_3:54431545-54431564 | None:intergenic | 30.0% | |
| !! | CAATTTTGCATTTAAAGTGG+TGG | - | chr1_3:54431640-54431659 | Msa0125790:intron | 30.0% |
| AATCATGAGAATATGATGAC+AGG | - | chr1_3:54431807-54431826 | Msa0125790:intron | 30.0% | |
| TTGCCACAACAACAATAAAT+TGG | + | chr1_3:54431889-54431908 | None:intergenic | 30.0% | |
| GATAGTTACTGTGTTCAATT+TGG | + | chr1_3:54431938-54431957 | None:intergenic | 30.0% | |
| TATTATGTATCAAACAGCGT+GGG | - | chr1_3:54432028-54432047 | Msa0125790:intron | 30.0% | |
| AAAAGTAACTCTACAACAGA+TGG | + | chr1_3:54432086-54432105 | None:intergenic | 30.0% | |
| !!! | ACAATTACGTTTTAACTGGA+CGG | - | chr1_3:54432296-54432315 | Msa0125790:intron | 30.0% |
| !! | CATATATGTACTGACTTGTT+AGG | - | chr1_3:54432374-54432393 | Msa0125790:CDS | 30.0% |
| GTTGTTGTCCATAAACAAAT+TGG | + | chr1_3:54432485-54432504 | None:intergenic | 30.0% | |
| ! | ATAGGCAAGTTCTTTTGTAA+AGG | + | chr1_3:54432568-54432587 | None:intergenic | 30.0% |
| ! | ATTAAGGGGGTTTTACCTTT+CGG | + | chr1_3:54427884-54427903 | None:intergenic | 35.0% |
| TGAATTGCAGAATTTACCAG+CGG | - | chr1_3:54427951-54427970 | Msa0125790:intron | 35.0% | |
| ATACCTATGCTTGTTTGGAT+TGG | - | chr1_3:54428256-54428275 | Msa0125790:intron | 35.0% | |
| AGACAGTTTGATTGAGCTTA+TGG | - | chr1_3:54428315-54428334 | Msa0125790:intron | 35.0% | |
| TCCACTAAATAAGTCCAAAC+AGG | + | chr1_3:54428510-54428529 | None:intergenic | 35.0% | |
| CACACAAGTACTTATGTTAG+TGG | + | chr1_3:54428539-54428558 | None:intergenic | 35.0% | |
| TAAGTACTTGTGTGACAGTT+TGG | - | chr1_3:54428545-54428564 | Msa0125790:intron | 35.0% | |
| AAGTACTTGTGTGACAGTTT+GGG | - | chr1_3:54428546-54428565 | Msa0125790:intron | 35.0% | |
| ! | AAATATGTTTAGGGTCTGTC+GGG | - | chr1_3:54428902-54428921 | Msa0125790:intron | 35.0% |
| ! | ATTTAGTGGAACTGATGATG+CGG | - | chr1_3:54429501-54429520 | Msa0125790:intron | 35.0% |
| AGATAGTTGACAAGCGAAAT+GGG | - | chr1_3:54429524-54429543 | Msa0125790:intron | 35.0% | |
| TAACTCAAGTGGTTGATCTA+GGG | + | chr1_3:54429693-54429712 | None:intergenic | 35.0% | |
| TATCCAAAGTGTAACTCAAG+TGG | + | chr1_3:54429704-54429723 | None:intergenic | 35.0% | |
| TACTAACATAAGCACTTGTG+AGG | - | chr1_3:54429809-54429828 | Msa0125790:intron | 35.0% | |
| ACTAACATAAGCACTTGTGA+GGG | - | chr1_3:54429810-54429829 | Msa0125790:intron | 35.0% | |
| GTTTATGGACATACCATAAG+AGG | + | chr1_3:54429862-54429881 | None:intergenic | 35.0% | |
| TGAAAAATTAGGGGTTGCAT+TGG | + | chr1_3:54430108-54430127 | None:intergenic | 35.0% | |
| ! | GATCAATTGATTGAAAGTGC+AGG | + | chr1_3:54430234-54430253 | None:intergenic | 35.0% |
| ! | TTACCCTTATTTCAAGTGCT+TGG | - | chr1_3:54430367-54430386 | Msa0125790:intron | 35.0% |
| !!! | TTCAAGTGCTTGGTTTTAGT+TGG | - | chr1_3:54430377-54430396 | Msa0125790:intron | 35.0% |
| ! | TCTGTTTGAAATTGGTGACT+GGG | - | chr1_3:54430412-54430431 | Msa0125790:intron | 35.0% |
| ! | CATTTTATCAAACAGGAAGG+AGG | + | chr1_3:54430484-54430503 | None:intergenic | 35.0% |
| !! | AATTGACAGACAAAAGTACC+AGG | - | chr1_3:54430625-54430644 | Msa0125790:intron | 35.0% |
| !!! | AACCTGATTTTTTTCATCGC+TGG | + | chr1_3:54430793-54430812 | None:intergenic | 35.0% |
| !! | ATCTTAGCCCATTTTTGTAG+AGG | - | chr1_3:54430908-54430927 | Msa0125790:intron | 35.0% |
| GAAATCTGCCTCTACAAAAA+TGG | + | chr1_3:54430919-54430938 | None:intergenic | 35.0% | |
| ! | ACCTTGACAACTTGTTTGAA+GGG | + | chr1_3:54430969-54430988 | None:intergenic | 35.0% |
| ! | AACCTTGACAACTTGTTTGA+AGG | + | chr1_3:54430970-54430989 | None:intergenic | 35.0% |
| TCAAACAAGTTGTCAAGGTT+TGG | - | chr1_3:54430970-54430989 | Msa0125790:intron | 35.0% | |
| CAAACAAGTTGTCAAGGTTT+GGG | - | chr1_3:54430971-54430990 | Msa0125790:intron | 35.0% | |
| ACCTAAGAAGAAAAAGAAGC+AGG | - | chr1_3:54431302-54431321 | Msa0125790:intron | 35.0% | |
| ! | ACCTGCTTCTTTTTCTTCTT+AGG | + | chr1_3:54431306-54431325 | None:intergenic | 35.0% |
| ! | CACTTATGTCTTTTGTGTTC+AGG | - | chr1_3:54431578-54431597 | Msa0125790:intron | 35.0% |
| TACTGTCTTCCTTGAAAGAA+AGG | - | chr1_3:54431768-54431787 | Msa0125790:intron | 35.0% | |
| ACTGTCTTCCTTGAAAGAAA+GGG | - | chr1_3:54431769-54431788 | Msa0125790:intron | 35.0% | |
| TTCATATCCCCTTTCTTTCA+AGG | + | chr1_3:54431780-54431799 | None:intergenic | 35.0% | |
| !! | ATAAGGTGTCAAGTGTGTTT+TGG | + | chr1_3:54431864-54431883 | None:intergenic | 35.0% |
| GTATTATGTATCAAACAGCG+TGG | - | chr1_3:54432027-54432046 | Msa0125790:intron | 35.0% | |
| TTGTCTTCAGTAGACTACTT+AGG | - | chr1_3:54432104-54432123 | Msa0125790:CDS | 35.0% | |
| TGTGAAGAAGCTGATCTAAA+TGG | + | chr1_3:54432260-54432279 | None:intergenic | 35.0% | |
| !!! | CAATTACGTTTTAACTGGAC+GGG | - | chr1_3:54432297-54432316 | Msa0125790:intron | 35.0% |
| !! | TGACTTGTTAGGATAGATTG+AGG | - | chr1_3:54432385-54432404 | Msa0125790:CDS | 35.0% |
| AGGAAATTACACACCATATC+TGG | + | chr1_3:54432548-54432567 | None:intergenic | 35.0% | |
| CTATTGCTTTCTTCATCTCG+AGG | + | chr1_3:54427677-54427696 | None:intergenic | 40.0% | |
| AACGGGTGGTTTGAATTTCT+TGG | + | chr1_3:54427823-54427842 | None:intergenic | 40.0% | |
| AGTGTAAGGGTTGGGATTAA+GGG | + | chr1_3:54427899-54427918 | None:intergenic | 40.0% | |
| TAGTGTAAGGGTTGGGATTA+AGG | + | chr1_3:54427900-54427919 | None:intergenic | 40.0% | |
| ! | TTAGGGTTAGTGTAAGGGTT+GGG | + | chr1_3:54427907-54427926 | None:intergenic | 40.0% |
| ! | ATTAGGGTTAGTGTAAGGGT+TGG | + | chr1_3:54427908-54427927 | None:intergenic | 40.0% |
| ! | CCGAATTAGGGTTAGTGTAA+GGG | + | chr1_3:54427912-54427931 | None:intergenic | 40.0% |
| CCCTTACACTAACCCTAATT+CGG | - | chr1_3:54427909-54427928 | Msa0125790:intron | 40.0% | |
| ! | ACCGAATTAGGGTTAGTGTA+AGG | + | chr1_3:54427913-54427932 | None:intergenic | 40.0% |
| AAGCCAATCCAAACAAGCAT+AGG | + | chr1_3:54428262-54428281 | None:intergenic | 40.0% | |
| GTTTGATTGAGCTTATGGAC+CGG | - | chr1_3:54428320-54428339 | Msa0125790:intron | 40.0% | |
| CTTAAGGTCATGTCATTAGC+CGG | + | chr1_3:54428342-54428361 | None:intergenic | 40.0% | |
| GCCTGTTTGGACTTATTTAG+TGG | - | chr1_3:54428506-54428525 | Msa0125790:intron | 40.0% | |
| TGACAGTTTGGGAGAGTTTA+TGG | - | chr1_3:54428557-54428576 | Msa0125790:intron | 40.0% | |
| ! | AATTTCCCAAGCGCTTTTGT+CGG | + | chr1_3:54428951-54428970 | None:intergenic | 40.0% |
| ! | AAAGCGCTTGGGAAATTGTT+TGG | - | chr1_3:54428954-54428973 | Msa0125790:CDS | 40.0% |
| AAGCGCTTGGGAAATTGTTT+GGG | - | chr1_3:54428955-54428974 | Msa0125790:CDS | 40.0% | |
| AAATTGTTTGGGAGAGCTAG+TGG | - | chr1_3:54428966-54428985 | Msa0125790:CDS | 40.0% | |
| ! | CTAATTTTCGCAAGCTGTCT+AGG | - | chr1_3:54429304-54429323 | Msa0125790:intron | 40.0% |
| GAGATAGTTGACAAGCGAAA+TGG | - | chr1_3:54429523-54429542 | Msa0125790:intron | 40.0% | |
| GATTGAAGAGAGGTTATCTG+TGG | - | chr1_3:54429558-54429577 | Msa0125790:intron | 40.0% | |
| GTAACTCAAGTGGTTGATCT+AGG | + | chr1_3:54429694-54429713 | None:intergenic | 40.0% | |
| CAACCACTTGAGTTACACTT+TGG | - | chr1_3:54429698-54429717 | Msa0125790:intron | 40.0% | |
| TTGTGAGGGAGACTACTTTA+GGG | - | chr1_3:54429824-54429843 | Msa0125790:intron | 40.0% | |
| ! | AGACTACTTTAGGGAGCTTA+AGG | - | chr1_3:54429833-54429852 | Msa0125790:intron | 40.0% |
| GAGCTTAAGGAAACCTCTTA+TGG | - | chr1_3:54429846-54429865 | Msa0125790:intron | 40.0% | |
| ! | TGTTTTCGTAGGAACTATCC+TGG | + | chr1_3:54429912-54429931 | None:intergenic | 40.0% |
| AGAAACATTATATGCAGGGG+CGG | + | chr1_3:54430339-54430358 | None:intergenic | 40.0% | |
| ! | AGCTGAGCTCTGTTTGAAAT+TGG | - | chr1_3:54430404-54430423 | Msa0125790:intron | 40.0% |
| ! | CTCTGTTTGAAATTGGTGAC+TGG | - | chr1_3:54430411-54430430 | Msa0125790:intron | 40.0% |
| ! | GGAAGGAGGCATAAATACAA+AGG | + | chr1_3:54430470-54430489 | None:intergenic | 40.0% |
| CTAAAACATCTTTGCTCACC+TGG | + | chr1_3:54430646-54430665 | None:intergenic | 40.0% | |
| GTCCAGCGATGAAAAAAATC+AGG | - | chr1_3:54430788-54430807 | Msa0125790:intron | 40.0% | |
| !!! | TTTTGCTGTTTGATGCGTAG+CGG | + | chr1_3:54431044-54431063 | None:intergenic | 40.0% |
| !! | CAGCTCAGACTTTAGAGTAA+GGG | - | chr1_3:54431149-54431168 | Msa0125790:intron | 40.0% |
| CTGTCTTCCTTGAAAGAAAG+GGG | - | chr1_3:54431770-54431789 | Msa0125790:intron | 40.0% | |
| AGTTAGCTCAAGCTTTACTG+TGG | - | chr1_3:54431966-54431985 | Msa0125790:intron | 40.0% | |
| GCATTACAATTAGGGACATC+AGG | + | chr1_3:54432186-54432205 | None:intergenic | 40.0% | |
| AGTTTATCCATCATTCCTGC+AGG | + | chr1_3:54432223-54432242 | None:intergenic | 40.0% | |
| ! | GGATAAACTGAGCATTGCTA+TGG | - | chr1_3:54432234-54432253 | Msa0125790:CDS | 40.0% |
| ! | GGTGGTTTTTCTACGGTTTG+CGG | + | chr1_3:54427799-54427818 | None:intergenic | 45.0% |
| ! | TCTTGGCGGTGGTTTTTCTA+CGG | + | chr1_3:54427806-54427825 | None:intergenic | 45.0% |
| TGGTTTGAATTTCTTGGCGG+TGG | + | chr1_3:54427817-54427836 | None:intergenic | 45.0% | |
| GGGTGGTTTGAATTTCTTGG+CGG | + | chr1_3:54427820-54427839 | None:intergenic | 45.0% | |
| !! | TGGTTTTTGAGAGAAACGGG+TGG | + | chr1_3:54427837-54427856 | None:intergenic | 45.0% |
| TGTAAGGGTTGGGATTAAGG+GGG | + | chr1_3:54427897-54427916 | None:intergenic | 45.0% | |
| GTGTAAGGGTTGGGATTAAG+GGG | + | chr1_3:54427898-54427917 | None:intergenic | 45.0% | |
| ATTGCAGAATTTACCAGCGG+AGG | - | chr1_3:54427954-54427973 | Msa0125790:intron | 45.0% | |
| ATATCTTACGTTCCACAGCG+AGG | + | chr1_3:54428041-54428060 | None:intergenic | 45.0% | |
| AGCTTCTTCGTCGTCTTCTT+CGG | - | chr1_3:54428140-54428159 | Msa0125790:intron | 45.0% | |
| TTAAGCGAAGCAAGCTGATC+AGG | + | chr1_3:54428180-54428199 | None:intergenic | 45.0% | |
| AGGGGTTTATACTGCCTGTT+TGG | - | chr1_3:54428493-54428512 | Msa0125790:intron | 45.0% | |
| !! | TATCTACCGACAAAAGCGCT+TGG | - | chr1_3:54428942-54428961 | Msa0125790:CDS | 45.0% |
| !! | ATCTACCGACAAAAGCGCTT+GGG | - | chr1_3:54428943-54428962 | Msa0125790:CDS | 45.0% |
| TCAGCACTTGTGAGACAGTT+TGG | - | chr1_3:54429235-54429254 | Msa0125790:CDS | 45.0% | |
| TGCGCAAACAGATTGAAGAG+AGG | - | chr1_3:54429548-54429567 | Msa0125790:intron | 45.0% | |
| GCAACTGGCAAGGATTTAGA+AGG | - | chr1_3:54429586-54429605 | Msa0125790:intron | 45.0% | |
| ACTGGCAAGGATTTAGAAGG+TGG | - | chr1_3:54429589-54429608 | Msa0125790:intron | 45.0% | |
| CTTGTGAGGGAGACTACTTT+AGG | - | chr1_3:54429823-54429842 | Msa0125790:intron | 45.0% | |
| TAAACAGGGCCATAGAACCA+GGG | - | chr1_3:54430055-54430074 | Msa0125790:intron | 45.0% | |
| GGCGGATGGAAAAATTATCC+AGG | + | chr1_3:54430321-54430340 | None:intergenic | 45.0% | |
| ! | TGTGCTACTGTTACAGAGAC+TGG | - | chr1_3:54430516-54430535 | Msa0125790:intron | 45.0% |
| GCTTCATCACTAGAACTTCC+AGG | + | chr1_3:54430591-54430610 | None:intergenic | 45.0% | |
| !! | TTGTATTGGTTGCAGAGAGC+AGG | - | chr1_3:54430731-54430750 | Msa0125790:intron | 45.0% |
| GCCCTTCAAACAAGTTGTCA+AGG | - | chr1_3:54430965-54430984 | Msa0125790:intron | 45.0% | |
| !! | TTTGCTGTTTGATGCGTAGC+GGG | + | chr1_3:54431043-54431062 | None:intergenic | 45.0% |
| CAGCTCAGACTTCAGAGTAA+GGG | - | chr1_3:54431065-54431084 | Msa0125790:intron | 45.0% | |
| TAAGGGAACCCTCAAGATCA+GGG | - | chr1_3:54431082-54431101 | Msa0125790:intron | 45.0% | |
| CAGCTCAGACTTCAGAGTAA+GGG | - | chr1_3:54431065-54431084 | Msa0125790:intron | 45.0% | |
| TAAGGGAACCTTCAAGAGCA+GGG | - | chr1_3:54431124-54431143 | Msa0125790:intron | 45.0% | |
| !! | CCTTACTCTAAAGTCTGAGC+TGG | + | chr1_3:54431151-54431170 | None:intergenic | 45.0% |
| !! | CCAGCTCAGACTTTAGAGTA+AGG | - | chr1_3:54431148-54431167 | Msa0125790:intron | 45.0% |
| TAAGGGAACCCTCAAGATCA+GGG | - | chr1_3:54431082-54431101 | Msa0125790:intron | 45.0% | |
| GCTTAGACTACTACCATGAC+TGG | + | chr1_3:54431193-54431212 | None:intergenic | 45.0% | |
| TTAGGTCTTCTCTTTCTCCG+AGG | + | chr1_3:54431288-54431307 | None:intergenic | 45.0% | |
| GTTGTTGTGGCAACTACGTT+TGG | - | chr1_3:54431896-54431915 | Msa0125790:intron | 45.0% | |
| CACATTTATTCTCCACCTGC+AGG | - | chr1_3:54432205-54432224 | Msa0125790:CDS | 45.0% | |
| TTATCCATCATTCCTGCAGG+TGG | + | chr1_3:54432220-54432239 | None:intergenic | 45.0% | |
| GGGTCTTCATATCTGACCTT+GGG | - | chr1_3:54432442-54432461 | Msa0125790:CDS | 45.0% | |
| !!! | TTAATTTTTTGTTATAAAAA+TGG | - | chr1_3:54429079-54429098 | Msa0125790:CDS | 5.0% |
| TACTACCGAAAACAGCGCCA+TGG | - | chr1_3:54427728-54427747 | Msa0125790:intron | 50.0% | |
| ! | TTTTTCTACGGTTTGCGGCG+GGG | + | chr1_3:54427794-54427813 | None:intergenic | 50.0% |
| ! | GTTTTTCTACGGTTTGCGGC+GGG | + | chr1_3:54427795-54427814 | None:intergenic | 50.0% |
| ! | GGTTTTTCTACGGTTTGCGG+CGG | + | chr1_3:54427796-54427815 | None:intergenic | 50.0% |
| TACCTTTCGGAGCATGCGTT+CGG | + | chr1_3:54427871-54427890 | None:intergenic | 50.0% | |
| ! | AGAAGCACAGGTGCAGAAAC+TGG | - | chr1_3:54427981-54428000 | Msa0125790:intron | 50.0% |
| !! | GGAAGCACTGAAGAAACAGC+AGG | - | chr1_3:54428002-54428021 | Msa0125790:intron | 50.0% |
| TTATCTGTGGCTGCTGCAAC+TGG | - | chr1_3:54429571-54429590 | Msa0125790:intron | 50.0% | |
| GTAAACAGGGCCATAGAACC+AGG | - | chr1_3:54430054-54430073 | Msa0125790:intron | 50.0% | |
| AAACAGGGCCATAGAACCAG+GGG | - | chr1_3:54430056-54430075 | Msa0125790:intron | 50.0% | |
| !! | TTGGTTTGGTTGTGCACTCC+TGG | - | chr1_3:54430300-54430319 | Msa0125790:intron | 50.0% |
| ACATTATATGCAGGGGCGGA+TGG | + | chr1_3:54430335-54430354 | None:intergenic | 50.0% | |
| TGTTACAGAGACTGGCAGTG+AGG | - | chr1_3:54430524-54430543 | Msa0125790:intron | 50.0% | |
| ! | GCTTCTGGAAAAGCTGTGTC+TGG | - | chr1_3:54430762-54430781 | Msa0125790:intron | 50.0% |
| ! | AACTTGTTTGAAGGGCGAGG+AGG | + | chr1_3:54430961-54430980 | None:intergenic | 50.0% |
| ! | GACAACTTGTTTGAAGGGCG+AGG | + | chr1_3:54430964-54430983 | None:intergenic | 50.0% |
| TTGTCAAGGTTTGGGTCTGC+AGG | - | chr1_3:54430979-54430998 | Msa0125790:intron | 50.0% | |
| GCAGCTCAGACTTCAGAGTA+AGG | - | chr1_3:54431064-54431083 | Msa0125790:intron | 50.0% | |
| GTAAGGGAACCCTCAAGATC+AGG | - | chr1_3:54431081-54431100 | Msa0125790:intron | 50.0% | |
| !! | CCTTACTCTGAAGTCTGAGC+TGG | + | chr1_3:54431067-54431086 | None:intergenic | 50.0% |
| CCAGCTCAGACTTCAGAGTA+AGG | - | chr1_3:54431106-54431125 | Msa0125790:intron | 50.0% | |
| GTAAGGGAACCTTCAAGAGC+AGG | - | chr1_3:54431123-54431142 | Msa0125790:intron | 50.0% | |
| GTAAGGGAACCCTCAAGATC+AGG | - | chr1_3:54431081-54431100 | Msa0125790:intron | 50.0% | |
| ! | TGACTGGTCCCTGATCTTGA+GGG | + | chr1_3:54431177-54431196 | None:intergenic | 50.0% |
| ! | ATGACTGGTCCCTGATCTTG+AGG | + | chr1_3:54431178-54431197 | None:intergenic | 50.0% |
| TCAAGATCAGGGACCAGTCA+TGG | - | chr1_3:54431177-54431196 | Msa0125790:intron | 50.0% | |
| AGGCTTGTGAGCATCAGAGT+TGG | + | chr1_3:54431217-54431236 | None:intergenic | 50.0% | |
| ACTCTGATGCTCACAAGCCT+CGG | - | chr1_3:54431217-54431236 | Msa0125790:intron | 50.0% | |
| AGGCTTGTGAGCATCAGAGT+TGG | + | chr1_3:54431217-54431236 | None:intergenic | 50.0% | |
| ACTCTGATGCTCACAAGCCT+CGG | - | chr1_3:54431217-54431236 | Msa0125790:intron | 50.0% | |
| TTCTCCACCTGCAGGAATGA+TGG | - | chr1_3:54432213-54432232 | Msa0125790:CDS | 50.0% | |
| CAGTAAAAGAAGCTCCCTGC+AGG | + | chr1_3:54432340-54432359 | None:intergenic | 50.0% | |
| ! | CTGCAGGGAGCTTCTTTTAC+TGG | - | chr1_3:54432338-54432357 | Msa0125790:intron | 50.0% |
| GGGGTCTTCATATCTGACCT+TGG | - | chr1_3:54432441-54432460 | Msa0125790:CDS | 50.0% | |
| CTTCATCTCGAGGAACCCGA+CGG | + | chr1_3:54427667-54427686 | None:intergenic | 55.0% | |
| !! | GTGAGCCATGGCGCTGTTTT+CGG | + | chr1_3:54427736-54427755 | None:intergenic | 55.0% |
| GAAAACAGCGCCATGGCTCA+CGG | - | chr1_3:54427735-54427754 | Msa0125790:intron | 55.0% | |
| TGTGCTTCTCTAACCTCCGC+TGG | + | chr1_3:54427970-54427989 | None:intergenic | 55.0% | |
| ! | AGCGGAGGTTAGAGAAGCAC+AGG | - | chr1_3:54427969-54427988 | Msa0125790:intron | 55.0% |
| TATTCACACTCGCCTCGCTG+TGG | - | chr1_3:54428026-54428045 | Msa0125790:intron | 55.0% | |
| TTGGGAGAGCTAGTGGAGAC+AGG | - | chr1_3:54428973-54428992 | Msa0125790:CDS | 55.0% | |
| GAGACTGGCAGTGAGGATGA+CGG | - | chr1_3:54430531-54430550 | Msa0125790:intron | 55.0% | |
| ! | CAGTGAGGATGACGGTCTTC+TGG | - | chr1_3:54430539-54430558 | Msa0125790:intron | 55.0% |
| GAGCAGGCTTCTAGTGCTTC+TGG | - | chr1_3:54430747-54430766 | Msa0125790:intron | 55.0% | |
| !! | AGGAGGAGGCATCAAAGCTC+TGG | + | chr1_3:54430944-54430963 | None:intergenic | 55.0% |
| TTGTTTGAAGGGCGAGGAGG+AGG | + | chr1_3:54430958-54430977 | None:intergenic | 55.0% | |
| GAGCTGGTCCCTGATCTTGA+GGG | + | chr1_3:54431093-54431112 | None:intergenic | 55.0% | |
| TGAGCTGGTCCCTGATCTTG+AGG | + | chr1_3:54431094-54431113 | None:intergenic | 55.0% | |
| ACTGGACGGGACATGTTCTG+TGG | - | chr1_3:54432310-54432329 | Msa0125790:intron | 55.0% | |
| !! | ATGTTCTGTGGTGGACCTGC+AGG | - | chr1_3:54432322-54432341 | Msa0125790:intron | 55.0% |
| !! | TGTTCTGTGGTGGACCTGCA+GGG | - | chr1_3:54432323-54432342 | Msa0125790:intron | 55.0% |
| ATCTCGAGGAACCCGACGGA+GGG | + | chr1_3:54427663-54427682 | None:intergenic | 60.0% | |
| ! | TGTCAACAAGCGCCGCGAGA+GGG | - | chr1_3:54427764-54427783 | Msa0125790:intron | 60.0% |
| TGCGTTCGGCGGATCGGATT+TGG | + | chr1_3:54427857-54427876 | None:intergenic | 60.0% | |
| CTTTCGGAGCATGCGTTCGG+CGG | + | chr1_3:54427868-54427887 | None:intergenic | 60.0% | |
| TGTGGCTGCTGCAACTGGCA+AGG | - | chr1_3:54429576-54429595 | Msa0125790:intron | 60.0% | |
| !! | TGGCTCCACCCCTGGTTCTA+TGG | + | chr1_3:54430067-54430086 | None:intergenic | 60.0% |
| TAGAACCAGGGGTGGAGCCA+AGG | - | chr1_3:54430067-54430086 | Msa0125790:intron | 60.0% | |
| AGAACCAGGGGTGGAGCCAA+GGG | - | chr1_3:54430068-54430087 | Msa0125790:intron | 60.0% | |
| AGCCAAGGGGTGGCCTATGT+GGG | - | chr1_3:54430082-54430101 | Msa0125790:intron | 60.0% | |
| ! | GGGGTTGCATTGGCCCACAT+AGG | + | chr1_3:54430098-54430117 | None:intergenic | 60.0% |
| GAGCTGGTCCCTGCTCTTGA+AGG | + | chr1_3:54431135-54431154 | None:intergenic | 60.0% | |
| GATGCTCACAAGCCTCGGAC+AGG | - | chr1_3:54431222-54431241 | Msa0125790:intron | 60.0% | |
| CACAAGCCTCGGACAGGTCA+TGG | - | chr1_3:54431228-54431247 | Msa0125790:intron | 60.0% | |
| CTACTGCCATGACCTGTCCG+AGG | + | chr1_3:54431237-54431256 | None:intergenic | 60.0% | |
| GGACGGGACATGTTCTGTGG+TGG | - | chr1_3:54432313-54432332 | Msa0125790:intron | 60.0% | |
| CATCTCGAGGAACCCGACGG+AGG | + | chr1_3:54427664-54427683 | None:intergenic | 65.0% | |
| AACAGCGCCATGGCTCACGG+CGG | - | chr1_3:54427738-54427757 | Msa0125790:intron | 65.0% | |
| ! | GTGTCAACAAGCGCCGCGAG+AGG | - | chr1_3:54427763-54427782 | Msa0125790:intron | 65.0% |
| GGAGCATGCGTTCGGCGGAT+CGG | + | chr1_3:54427863-54427882 | None:intergenic | 65.0% | |
| CGCCGAACGCATGCTCCGAA+AGG | - | chr1_3:54427866-54427885 | Msa0125790:intron | 65.0% | |
| CAGGGCCATAGAACCAGGGG+TGG | - | chr1_3:54430059-54430078 | Msa0125790:intron | 65.0% | |
| GAACCAGGGGTGGAGCCAAG+GGG | - | chr1_3:54430069-54430088 | Msa0125790:intron | 65.0% | |
| GAGCCAAGGGGTGGCCTATG+TGG | - | chr1_3:54430081-54430100 | Msa0125790:intron | 65.0% | |
| GGCCCACATAGGCCACCCCT+TGG | + | chr1_3:54430087-54430106 | None:intergenic | 70.0% | |
| AGCGCCATGGCTCACGGCGG+CGG | - | chr1_3:54427741-54427760 | Msa0125790:intron | 75.0% | |
| GACACCGCCGCCGTGAGCCA+TGG | + | chr1_3:54427748-54427767 | None:intergenic | 75.0% | |
| CGGCGGGGTTGACCCTCTCG+CGG | + | chr1_3:54427779-54427798 | None:intergenic | 75.0% | |
| CCACCCCTTGGCTCCACCCC+TGG | + | chr1_3:54430075-54430094 | None:intergenic | 75.0% | |
| CCAGGGGTGGAGCCAAGGGG+TGG | - | chr1_3:54430072-54430091 | Msa0125790:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 54427653 | 54432590 | 54427653 | ID=Msa0125790;Name=Msa0125790 |
| chr1_3 | mRNA | 54427653 | 54432590 | 54427653 | ID=Msa0125790-mRNA-1;Parent=Msa0125790;Name=Msa0125790-mRNA-1;_AED=0.20;_eAED=0.23;_QI=94|0.66|0.57|1|0.66|0.57|7|0|349 |
| chr1_3 | exon | 54427653 | 54427694 | 54427653 | ID=Msa0125790-mRNA-1:exon:16845;Parent=Msa0125790-mRNA-1 |
| chr1_3 | exon | 54428920 | 54429315 | 54428920 | ID=Msa0125790-mRNA-1:exon:16844;Parent=Msa0125790-mRNA-1 |
| chr1_3 | exon | 54429434 | 54429497 | 54429434 | ID=Msa0125790-mRNA-1:exon:16843;Parent=Msa0125790-mRNA-1 |
| chr1_3 | exon | 54429597 | 54429711 | 54429597 | ID=Msa0125790-mRNA-1:exon:16842;Parent=Msa0125790-mRNA-1 |
| chr1_3 | exon | 54430636 | 54430736 | 54430636 | ID=Msa0125790-mRNA-1:exon:16841;Parent=Msa0125790-mRNA-1 |
| chr1_3 | exon | 54432092 | 54432282 | 54432092 | ID=Msa0125790-mRNA-1:exon:16840;Parent=Msa0125790-mRNA-1 |
| chr1_3 | exon | 54432356 | 54432590 | 54432356 | ID=Msa0125790-mRNA-1:exon:16839;Parent=Msa0125790-mRNA-1 |
| chr1_3 | five_prime_UTR | 54432497 | 54432590 | 54432497 | ID=Msa0125790-mRNA-1:five_prime_utr;Parent=Msa0125790-mRNA-1 |
| chr1_3 | CDS | 54432356 | 54432496 | 54432356 | ID=Msa0125790-mRNA-1:cds;Parent=Msa0125790-mRNA-1 |
| chr1_3 | CDS | 54432092 | 54432282 | 54432092 | ID=Msa0125790-mRNA-1:cds;Parent=Msa0125790-mRNA-1 |
| chr1_3 | CDS | 54430636 | 54430736 | 54430636 | ID=Msa0125790-mRNA-1:cds;Parent=Msa0125790-mRNA-1 |
| chr1_3 | CDS | 54429597 | 54429711 | 54429597 | ID=Msa0125790-mRNA-1:cds;Parent=Msa0125790-mRNA-1 |
| chr1_3 | CDS | 54429434 | 54429497 | 54429434 | ID=Msa0125790-mRNA-1:cds;Parent=Msa0125790-mRNA-1 |
| chr1_3 | CDS | 54428920 | 54429315 | 54428920 | ID=Msa0125790-mRNA-1:cds;Parent=Msa0125790-mRNA-1 |
| chr1_3 | CDS | 54427653 | 54427694 | 54427653 | ID=Msa0125790-mRNA-1:cds;Parent=Msa0125790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
