AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1073590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1073590 MtrunA17_Chr7g0256611 100.000 182 0 0 1 182 90 271 2.34e-122 346
Msa1073590 MtrunA17_Chr4g0036041 35.669 157 95 3 20 176 8 158 4.99e-23 90.1
Msa1073590 MtrunA17_Chr8g0372131 35.669 157 95 3 20 176 8 158 4.99e-23 90.1
Msa1073590 MtrunA17_Chr5g0405201 35.032 157 96 3 20 176 8 158 1.44e-22 89.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1073590 AT2G25610.1 92.000 175 14 0 7 181 4 178 4.80e-111 314
Msa1073590 AT2G25610.2 92.000 175 14 0 7 181 53 227 7.55e-111 315
Msa1073590 AT4G32530.1 93.023 172 12 0 10 181 9 180 1.32e-110 313
Msa1073590 AT4G32530.2 79.208 202 12 1 10 181 9 210 2.27e-103 296
Msa1073590 AT1G19910.1 35.669 157 95 3 20 176 9 159 6.34e-23 90.1
Msa1073590 AT1G75630.1 35.669 157 95 3 20 176 10 160 6.64e-23 90.1
Msa1073590 AT4G34720.1 35.669 157 95 3 20 176 8 158 6.89e-23 90.1
Msa1073590 AT4G38920.1 35.669 157 95 3 20 176 8 158 6.89e-23 90.1
Msa1073590 AT2G16510.1 35.669 157 95 3 20 176 8 158 6.89e-23 90.1
Msa1073590 AT4G38920.2 37.226 137 81 2 40 176 1 132 6.03e-22 86.7
Msa1073590 AT4G34720.2 37.226 137 81 2 40 176 5 136 8.37e-22 86.7
Msa1073590 AT1G75630.2 29.843 191 94 5 20 176 10 194 5.54e-16 72.8
Msa1073590 AT1G19910.2 31.624 117 74 3 20 136 9 119 8.42e-11 57.4

Find 56 sgRNAs with CRISPR-Local

Find 480 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTCATAGATACTTGATTT+TGG 0.177979 7_2:-71164678 None:intergenic
ATGTTCAAATTAATCATAAA+TGG 0.215363 7_2:-71165442 None:intergenic
GGTAGTGCGCTTGGCCTATT+TGG 0.238231 7_2:+71164976 Msa1073590:CDS
TCTCTGCTGCTTATCCCTTT+TGG 0.270357 7_2:+71165134 Msa1073590:three_prime_UTR
TATCCAGCTCTAAGAGATTC+TGG 0.324274 7_2:-71164699 None:intergenic
GGATATGCAATCTTTGCTTC+TGG 0.326193 7_2:+71164717 Msa1073590:CDS
TCTACCAGAGTTGTTATAGA+AGG 0.330132 7_2:+71165215 Msa1073590:three_prime_UTR
TGTGAAGCTGTTGCTATATA+TGG 0.352411 7_2:+71164612 Msa1073590:CDS
ATTCTTGTGATTGAGATCTT+TGG 0.353130 7_2:+71164955 Msa1073590:CDS
GGCCTATTTGGAGTTATTGT+TGG 0.370654 7_2:+71164988 Msa1073590:CDS
TTGCAGCGCATTCAAGCTCT+TGG 0.376310 7_2:+71161516 Msa1073590:CDS
TTTGCTTCTGGACTTATTGT+GGG 0.379757 7_2:+71164729 Msa1073590:CDS
AGGTTGTGTGTAGGCATAAT+TGG 0.380831 7_2:+71164883 Msa1073590:intron
TTCCAACAATAACTCCAAAT+AGG 0.387180 7_2:-71164990 None:intergenic
CTTTGCTTCTGGACTTATTG+TGG 0.393040 7_2:+71164728 Msa1073590:CDS
GGCGATACCGATTGCGGAAA+AGG 0.405375 7_2:-71161570 None:intergenic
CTTGGGCTGCAGCACTCGTC+AGG 0.412435 7_2:+71161534 Msa1073590:CDS
AGAGGATTGGGATCGGATCT+TGG 0.414602 7_2:-71161453 None:intergenic
AAATGTGAATTTATTGGTCT+CGG 0.414802 7_2:+71165330 Msa1073590:three_prime_UTR
GCTTCGCAAATCTTGTTTGT+GGG 0.438334 7_2:+71164751 Msa1073590:CDS
TGTTACGTGAGGAGAGGATT+GGG 0.458835 7_2:-71161465 None:intergenic
TGCAGCGCATTCAAGCTCTT+GGG 0.466822 7_2:+71161517 Msa1073590:CDS
TCTATCGGTGTCTCCGTTCT+CGG 0.467994 7_2:+71161596 Msa1073590:CDS
GAGATCTTTGGTAGTGCGCT+TGG 0.473123 7_2:+71164967 Msa1073590:CDS
TTGTGTAGTGAGATAGAAAG+AGG 0.479871 7_2:-71161425 None:intergenic
TTTGATCGGTGCTGCTATCA+AGG 0.480937 7_2:+71161739 Msa1073590:CDS
ATCGGTATCGCCGTCTCTAT+CGG 0.483284 7_2:+71161581 Msa1073590:CDS
CCGATTGCGGAAAAGGTGTA+TGG 0.489744 7_2:-71161563 None:intergenic
GGCTTCGCAAATCTTGTTTG+TGG 0.492697 7_2:+71164750 Msa1073590:CDS
AATACAGCCTACAGTTGTAA+TGG 0.499886 7_2:-71165191 None:intergenic
TTGTTACGTGAGGAGAGGAT+TGG 0.505254 7_2:-71161466 None:intergenic
GAACCAGAATCTCTTAGAGC+TGG 0.512261 7_2:+71164696 Msa1073590:CDS
GCCTTGTATCATCAGTGTGC+GGG 0.527553 7_2:+71165057 Msa1073590:three_prime_UTR
TGTTGTTGCAGGTTGTGTGT+AGG 0.535435 7_2:+71164874 Msa1073590:intron
CTACCAGAGTTGTTATAGAA+GGG 0.538207 7_2:+71165216 Msa1073590:three_prime_UTR
TGAAGGGGAATTTACATCAC+CGG 0.569427 7_2:+71161710 Msa1073590:intron
ATCACCGGTAGTAGTTTGAT+CGG 0.575017 7_2:+71161725 Msa1073590:CDS
CTTGTGTCCATTACAACTGT+AGG 0.583896 7_2:+71165184 Msa1073590:three_prime_UTR
AGTGTGCGGGAATTCAATTA+CGG 0.589846 7_2:+71165070 Msa1073590:three_prime_UTR
TGCCTTGTATCATCAGTGTG+CGG 0.590305 7_2:+71165056 Msa1073590:three_prime_UTR
CGTGAGGAGAGGATTGGGAT+CGG 0.595564 7_2:-71161460 None:intergenic
TCCCGCACACTGATGATACA+AGG 0.596240 7_2:-71165058 None:intergenic
TTACCAAGCAGCGCCGAGAA+CGG 0.602925 7_2:-71161609 None:intergenic
TGGTCTCGGCAATAAAGTCA+AGG 0.609715 7_2:+71165344 Msa1073590:three_prime_UTR
AGCACCGATCAAACTACTAC+CGG 0.613839 7_2:-71161729 None:intergenic
AACGGAGACACCGATAGAGA+CGG 0.614106 7_2:-71161591 None:intergenic
AGGCCCTTCTATAACAACTC+TGG 0.614389 7_2:-71165219 None:intergenic
GTGCTGCTATCAAGGCTCCA+AGG 0.615656 7_2:+71161747 Msa1073590:CDS
GATGGTTGTTACGTGAGGAG+AGG 0.633092 7_2:-71161471 None:intergenic
ATCGTGATGGTTGTTACGTG+AGG 0.637703 7_2:-71161476 None:intergenic
AGAGACGGCGATACCGATTG+CGG 0.644220 7_2:-71161576 None:intergenic
AGGCTTCAGATGTACTGATG+AGG 0.658242 7_2:+71165364 Msa1073590:three_prime_UTR
TTATGTCAGCTCAAGCAACA+TGG 0.667422 7_2:+71165016 Msa1073590:CDS
TGATATATCTGATGACACAC+AGG 0.673327 7_2:-71165239 None:intergenic
ATGGACACAAGCTATCATGT+CGG 0.703308 7_2:-71165172 None:intergenic
TGCAGAGCTAGACATCGTGA+TGG 0.721177 7_2:-71161489 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAAAATCTTTCTTTTTT+TGG - chr7_2:71164019-71164038 None:intergenic 10.0%
!! ATAAAAAAATGTGAATTTAT+TGG + chr7_2:71165324-71165343 Msa1073590:three_prime_UTR 10.0%
!!! AAAAAAAATCTTTCTTTTTT+TGG - chr7_2:71164019-71164038 None:intergenic 10.0%
!! ATAAAAAAATGTGAATTTAT+TGG + chr7_2:71165324-71165343 Msa1073590:three_prime_UTR 10.0%
!! ACTAAAAAACACAAATTTAA+AGG - chr7_2:71161816-71161835 None:intergenic 15.0%
!!! ATGTAAATGTTTTACTTTTT+TGG + chr7_2:71162113-71162132 Msa1073590:intron 15.0%
!! ATGAAAATGATAAAGAAAAA+AGG + chr7_2:71162341-71162360 Msa1073590:intron 15.0%
!! TACAATACATTTCTTAAAAA+AGG - chr7_2:71162784-71162803 None:intergenic 15.0%
!!! TTTTTTAAGAAATGTATTGT+AGG + chr7_2:71162783-71162802 Msa1073590:intron 15.0%
!!! TTTTTAAGAAATGTATTGTA+GGG + chr7_2:71162784-71162803 Msa1073590:intron 15.0%
!! TAAATATCACATAAAATACA+GGG - chr7_2:71164391-71164410 None:intergenic 15.0%
!! ATGTTCAAATTAATCATAAA+TGG - chr7_2:71165445-71165464 None:intergenic 15.0%
!! ACTAAAAAACACAAATTTAA+AGG - chr7_2:71161816-71161835 None:intergenic 15.0%
!!! ATGTAAATGTTTTACTTTTT+TGG + chr7_2:71162113-71162132 Msa1073590:intron 15.0%
!! ATGAAAATGATAAAGAAAAA+AGG + chr7_2:71162341-71162360 Msa1073590:intron 15.0%
!! TACAATACATTTCTTAAAAA+AGG - chr7_2:71162784-71162803 None:intergenic 15.0%
!!! TTTTTTAAGAAATGTATTGT+AGG + chr7_2:71162783-71162802 Msa1073590:intron 15.0%
!!! TTTTTAAGAAATGTATTGTA+GGG + chr7_2:71162784-71162803 Msa1073590:intron 15.0%
!! TAAATATCACATAAAATACA+GGG - chr7_2:71164391-71164410 None:intergenic 15.0%
!! ATGTTCAAATTAATCATAAA+TGG - chr7_2:71165445-71165464 None:intergenic 15.0%
!!! AGAGATAATTTGATTTGAAA+GGG - chr7_2:71161656-71161675 None:intergenic 20.0%
!!! AAGAGATAATTTGATTTGAA+AGG - chr7_2:71161657-71161676 None:intergenic 20.0%
!! TAAACAACAGATTCAAATAA+CGG - chr7_2:71161681-71161700 None:intergenic 20.0%
!! ATGTTTAATGCTTAATATCA+TGG + chr7_2:71162007-71162026 Msa1073590:intron 20.0%
!! AAGTAAAACATTTACATCAA+AGG - chr7_2:71162110-71162129 None:intergenic 20.0%
!! AATCAGGAAAAAATTATTGA+GGG + chr7_2:71162508-71162527 Msa1073590:intron 20.0%
!! AAATAATGAGACATCAAAAT+AGG + chr7_2:71162541-71162560 Msa1073590:intron 20.0%
!! TTATATAAAATACACAGAGA+CGG - chr7_2:71162632-71162651 None:intergenic 20.0%
!!! AAGTAGAAAATGTTTACTTT+TGG + chr7_2:71162959-71162978 Msa1073590:intron 20.0%
!!! AAAATGTTTACTTTTGGATT+TGG + chr7_2:71162965-71162984 Msa1073590:intron 20.0%
!! ACAATAAAATCTTGTATGTA+TGG - chr7_2:71163442-71163461 None:intergenic 20.0%
!!! TGTAAAGAATTACCTAATTT+TGG - chr7_2:71163569-71163588 None:intergenic 20.0%
!!! AAACAAGTGAAATAATTTTG+TGG + chr7_2:71163765-71163784 Msa1073590:intron 20.0%
!!! TGTATTTTAAAAAGCTCTAT+TGG + chr7_2:71164168-71164187 Msa1073590:intron 20.0%
!! CTAAATATCACATAAAATAC+AGG - chr7_2:71164392-71164411 None:intergenic 20.0%
!! AATACAAACTTAAACGTAAA+AGG - chr7_2:71164477-71164496 None:intergenic 20.0%
!!! AGAGATAATTTGATTTGAAA+GGG - chr7_2:71161656-71161675 None:intergenic 20.0%
!!! AAGAGATAATTTGATTTGAA+AGG - chr7_2:71161657-71161676 None:intergenic 20.0%
!! TAAACAACAGATTCAAATAA+CGG - chr7_2:71161681-71161700 None:intergenic 20.0%
!! ATGTTTAATGCTTAATATCA+TGG + chr7_2:71162007-71162026 Msa1073590:intron 20.0%
!! AAGTAAAACATTTACATCAA+AGG - chr7_2:71162110-71162129 None:intergenic 20.0%
!! AATCAGGAAAAAATTATTGA+GGG + chr7_2:71162508-71162527 Msa1073590:intron 20.0%
!! AAATAATGAGACATCAAAAT+AGG + chr7_2:71162541-71162560 Msa1073590:intron 20.0%
!! TTATATAAAATACACAGAGA+CGG - chr7_2:71162632-71162651 None:intergenic 20.0%
!!! AAGTAGAAAATGTTTACTTT+TGG + chr7_2:71162959-71162978 Msa1073590:intron 20.0%
!!! AAAATGTTTACTTTTGGATT+TGG + chr7_2:71162965-71162984 Msa1073590:intron 20.0%
!! ACAATAAAATCTTGTATGTA+TGG - chr7_2:71163442-71163461 None:intergenic 20.0%
!!! TGTAAAGAATTACCTAATTT+TGG - chr7_2:71163569-71163588 None:intergenic 20.0%
!!! AAACAAGTGAAATAATTTTG+TGG + chr7_2:71163765-71163784 Msa1073590:intron 20.0%
!!! TGTATTTTAAAAAGCTCTAT+TGG + chr7_2:71164168-71164187 Msa1073590:intron 20.0%
!! CTAAATATCACATAAAATAC+AGG - chr7_2:71164392-71164411 None:intergenic 20.0%
!! AATACAAACTTAAACGTAAA+AGG - chr7_2:71164477-71164496 None:intergenic 20.0%
! GGGAAAATTGAAAAAAATAG+GGG - chr7_2:71161635-71161654 None:intergenic 25.0%
! GGGGAAAATTGAAAAAAATA+GGG - chr7_2:71161636-71161655 None:intergenic 25.0%
! AGGGGAAAATTGAAAAAAAT+AGG - chr7_2:71161637-71161656 None:intergenic 25.0%
!!! GAGATAATTTGATTTGAAAG+GGG - chr7_2:71161655-71161674 None:intergenic 25.0%
!! TGAATCTGTTGTTTATGTAA+TGG + chr7_2:71161686-71161705 Msa1073590:intron 25.0%
! TTGTTTATGTAATGGTTGAA+GGG + chr7_2:71161694-71161713 Msa1073590:intron 25.0%
!! TACATACCTAATGAGATTTT+TGG - chr7_2:71161780-71161799 None:intergenic 25.0%
!!! CTAGTTTCTTTTTAGTTGAA+AGG + chr7_2:71162031-71162050 Msa1073590:intron 25.0%
!!! TTTTTAGTTGAAAGGAAATG+AGG + chr7_2:71162039-71162058 Msa1073590:intron 25.0%
! AAATGAGGAAGTTAATTACT+AGG + chr7_2:71162054-71162073 Msa1073590:intron 25.0%
! GCTCATAATAAATGATCATT+TGG + chr7_2:71162272-71162291 Msa1073590:intron 25.0%
!! TTATTTTCCTACAGAACAAT+TGG - chr7_2:71162440-71162459 None:intergenic 25.0%
! GAATCAGGAAAAAATTATTG+AGG + chr7_2:71162507-71162526 Msa1073590:intron 25.0%
! ATCAGGAAAAAATTATTGAG+GGG + chr7_2:71162509-71162528 Msa1073590:intron 25.0%
!! AGTAAACATTTTCTACTTAG+CGG - chr7_2:71162957-71162976 None:intergenic 25.0%
! GCATAATTTAATGAAGTATG+TGG - chr7_2:71163034-71163053 None:intergenic 25.0%
!! TCACAATACTGTTTTATAGA+AGG + chr7_2:71163184-71163203 Msa1073590:intron 25.0%
! ATTGCTTCAGAAAAATGTTT+AGG + chr7_2:71163257-71163276 Msa1073590:intron 25.0%
! GTTACTTGTAGTAATTAAGT+CGG + chr7_2:71163496-71163515 Msa1073590:intron 25.0%
! GATACTTGTAGTAATTAAGT+CGG + chr7_2:71163518-71163537 Msa1073590:intron 25.0%
!!! GGATAATATTCACTTTTGAT+TGG + chr7_2:71163539-71163558 Msa1073590:intron 25.0%
!! AACCAAATAGAATTTGTTTC+TGG + chr7_2:71163588-71163607 Msa1073590:intron 25.0%
! TTCCAGAAACAAATTCTATT+TGG - chr7_2:71163593-71163612 None:intergenic 25.0%
! TGAATATTTCCGTAAATTCA+TGG + chr7_2:71163916-71163935 Msa1073590:intron 25.0%
! GAATATTTCCGTAAATTCAT+GGG + chr7_2:71163917-71163936 Msa1073590:intron 25.0%
! CAAAGTGATACTCTAATTAT+TGG + chr7_2:71163957-71163976 Msa1073590:intron 25.0%
!!! AATCTTTCTTTTTTTGGTCA+AGG - chr7_2:71164013-71164032 None:intergenic 25.0%
! GCTAAACAAATGGTTAATTA+AGG + chr7_2:71164358-71164377 Msa1073590:intron 25.0%
! AATAATTGAGTATGTAGAAC+AGG - chr7_2:71164852-71164871 None:intergenic 25.0%
!!! TCAATTATTTTTGTTGTTGC+AGG + chr7_2:71164863-71164882 Msa1073590:intron 25.0%
!! AAGGCAAACTAAATTTTTGA+GGG - chr7_2:71165042-71165061 None:intergenic 25.0%
!! TTTTTACATTCTTGCCAAAA+GGG - chr7_2:71165151-71165170 None:intergenic 25.0%
!!! TTTTTTACATTCTTGCCAAA+AGG - chr7_2:71165152-71165171 None:intergenic 25.0%
!! AAATGTGAATTTATTGGTCT+CGG + chr7_2:71165330-71165349 Msa1073590:three_prime_UTR 25.0%
! GGGAAAATTGAAAAAAATAG+GGG - chr7_2:71161635-71161654 None:intergenic 25.0%
! GGGGAAAATTGAAAAAAATA+GGG - chr7_2:71161636-71161655 None:intergenic 25.0%
! AGGGGAAAATTGAAAAAAAT+AGG - chr7_2:71161637-71161656 None:intergenic 25.0%
!!! GAGATAATTTGATTTGAAAG+GGG - chr7_2:71161655-71161674 None:intergenic 25.0%
!! TGAATCTGTTGTTTATGTAA+TGG + chr7_2:71161686-71161705 Msa1073590:intron 25.0%
! TTGTTTATGTAATGGTTGAA+GGG + chr7_2:71161694-71161713 Msa1073590:intron 25.0%
!! TACATACCTAATGAGATTTT+TGG - chr7_2:71161780-71161799 None:intergenic 25.0%
!!! CTAGTTTCTTTTTAGTTGAA+AGG + chr7_2:71162031-71162050 Msa1073590:intron 25.0%
!!! TTTTTAGTTGAAAGGAAATG+AGG + chr7_2:71162039-71162058 Msa1073590:intron 25.0%
! AAATGAGGAAGTTAATTACT+AGG + chr7_2:71162054-71162073 Msa1073590:intron 25.0%
! GCTCATAATAAATGATCATT+TGG + chr7_2:71162272-71162291 Msa1073590:intron 25.0%
!! TTATTTTCCTACAGAACAAT+TGG - chr7_2:71162440-71162459 None:intergenic 25.0%
! GAATCAGGAAAAAATTATTG+AGG + chr7_2:71162507-71162526 Msa1073590:intron 25.0%
! ATCAGGAAAAAATTATTGAG+GGG + chr7_2:71162509-71162528 Msa1073590:intron 25.0%
!! AGTAAACATTTTCTACTTAG+CGG - chr7_2:71162957-71162976 None:intergenic 25.0%
! GCATAATTTAATGAAGTATG+TGG - chr7_2:71163034-71163053 None:intergenic 25.0%
!! TCACAATACTGTTTTATAGA+AGG + chr7_2:71163184-71163203 Msa1073590:intron 25.0%
! ATTGCTTCAGAAAAATGTTT+AGG + chr7_2:71163257-71163276 Msa1073590:intron 25.0%
! GTTACTTGTAGTAATTAAGT+CGG + chr7_2:71163496-71163515 Msa1073590:intron 25.0%
! GATACTTGTAGTAATTAAGT+CGG + chr7_2:71163518-71163537 Msa1073590:intron 25.0%
!!! GGATAATATTCACTTTTGAT+TGG + chr7_2:71163539-71163558 Msa1073590:intron 25.0%
!! AACCAAATAGAATTTGTTTC+TGG + chr7_2:71163588-71163607 Msa1073590:intron 25.0%
! TTCCAGAAACAAATTCTATT+TGG - chr7_2:71163593-71163612 None:intergenic 25.0%
! TGAATATTTCCGTAAATTCA+TGG + chr7_2:71163916-71163935 Msa1073590:intron 25.0%
! GAATATTTCCGTAAATTCAT+GGG + chr7_2:71163917-71163936 Msa1073590:intron 25.0%
! CAAAGTGATACTCTAATTAT+TGG + chr7_2:71163957-71163976 Msa1073590:intron 25.0%
!!! AATCTTTCTTTTTTTGGTCA+AGG - chr7_2:71164013-71164032 None:intergenic 25.0%
! GCTAAACAAATGGTTAATTA+AGG + chr7_2:71164358-71164377 Msa1073590:intron 25.0%
! AATAATTGAGTATGTAGAAC+AGG - chr7_2:71164852-71164871 None:intergenic 25.0%
!!! TCAATTATTTTTGTTGTTGC+AGG + chr7_2:71164863-71164882 Msa1073590:intron 25.0%
!! AAGGCAAACTAAATTTTTGA+GGG - chr7_2:71165042-71165061 None:intergenic 25.0%
!! TTTTTACATTCTTGCCAAAA+GGG - chr7_2:71165151-71165170 None:intergenic 25.0%
!!! TTTTTTACATTCTTGCCAAA+AGG - chr7_2:71165152-71165171 None:intergenic 25.0%
!! AAATGTGAATTTATTGGTCT+CGG + chr7_2:71165330-71165349 Msa1073590:three_prime_UTR 25.0%
GTTGTTTATGTAATGGTTGA+AGG + chr7_2:71161693-71161712 Msa1073590:intron 30.0%
TGTTTATGTAATGGTTGAAG+GGG + chr7_2:71161695-71161714 Msa1073590:intron 30.0%
TCACTTCCAAAAATCTCATT+AGG + chr7_2:71161771-71161790 Msa1073590:CDS 30.0%
! CTCGATGATAAGTTTTACAA+TGG + chr7_2:71161854-71161873 Msa1073590:intron 30.0%
! TCTGTTGATTGAACTTAGAT+AGG + chr7_2:71161893-71161912 Msa1073590:intron 30.0%
! CTGTTGATTGAACTTAGATA+GGG + chr7_2:71161894-71161913 Msa1073590:intron 30.0%
! GTTTTGCTTTGATTGATGTT+TGG + chr7_2:71161932-71161951 Msa1073590:intron 30.0%
AAAGGAATTGTTATAGAGCT+TGG + chr7_2:71161960-71161979 Msa1073590:intron 30.0%
!!! TTACTTTTTTGGCGACTTAA+TGG + chr7_2:71162124-71162143 Msa1073590:intron 30.0%
!!! TACTTTTTTGGCGACTTAAT+GGG + chr7_2:71162125-71162144 Msa1073590:intron 30.0%
!!! ATCTGTCATTTTTAGTGTTG+AGG + chr7_2:71162185-71162204 Msa1073590:intron 30.0%
AAGCGATATTACTATGTATC+TGG + chr7_2:71162214-71162233 Msa1073590:intron 30.0%
ATCATTTGGTCTGATATGAA+GGG + chr7_2:71162286-71162305 Msa1073590:intron 30.0%
TCACTGTGTAATCATACAAT+TGG + chr7_2:71162394-71162413 Msa1073590:intron 30.0%
TCAGGAAAAAATTATTGAGG+GGG + chr7_2:71162510-71162529 Msa1073590:intron 30.0%
!! ATGTTTACTTTTGGATTTGG+CGG + chr7_2:71162968-71162987 Msa1073590:intron 30.0%
ATTTAATGAAGTATGTGGCT+TGG - chr7_2:71163029-71163048 None:intergenic 30.0%
GATAAATGAGAAAGACTTGT+TGG - chr7_2:71163063-71163082 None:intergenic 30.0%
!!! TTTTCTGAAGCAATTGTTGA+GGG - chr7_2:71163251-71163270 None:intergenic 30.0%
!!! TTTTTCTGAAGCAATTGTTG+AGG - chr7_2:71163252-71163271 None:intergenic 30.0%
AATCACGCAGAACAAAAATT+TGG - chr7_2:71163345-71163364 None:intergenic 30.0%
!!! GTTACTTTTGTTGCTTTGTT+TGG + chr7_2:71163466-71163485 Msa1073590:intron 30.0%
!!! GGTCTTTTTTGATAGTTTTC+TGG - chr7_2:71163636-71163655 None:intergenic 30.0%
AACTATCAAAAAAGACCCAA+AGG + chr7_2:71163639-71163658 Msa1073590:intron 30.0%
! CAAGTGAAATAATTTTGTGG+AGG + chr7_2:71163768-71163787 Msa1073590:intron 30.0%
GTAACATGATATATACCAAG+TGG + chr7_2:71163806-71163825 Msa1073590:intron 30.0%
TTTGATGCAAGGAAAATCAA+AGG - chr7_2:71164056-71164075 None:intergenic 30.0%
AGATCTCAACACATAATCTT+TGG + chr7_2:71164097-71164116 Msa1073590:intron 30.0%
!!! GTTTTGGTTATGTTTTACAG+AGG + chr7_2:71164137-71164156 Msa1073590:intron 30.0%
!!! GTTTTGGTTATGTTTTACAG+AGG + chr7_2:71164137-71164156 Msa1073590:intron 30.0%
ACAGTTCATAGTGAAAATCT+TGG - chr7_2:71164255-71164274 None:intergenic 30.0%
!! AACCTTTAAGGCTAAACAAA+TGG + chr7_2:71164348-71164367 Msa1073590:intron 30.0%
!! AACCATTTGTTTAGCCTTAA+AGG - chr7_2:71164353-71164372 None:intergenic 30.0%
!! TTGACTTTGACTTGACAATA+TGG + chr7_2:71164555-71164574 Msa1073590:intron 30.0%
! GGTTCATAGATACTTGATTT+TGG - chr7_2:71164681-71164700 None:intergenic 30.0%
ATTCTTGTGATTGAGATCTT+TGG + chr7_2:71164955-71164974 Msa1073590:CDS 30.0%
TTCCAACAATAACTCCAAAT+AGG - chr7_2:71164993-71165012 None:intergenic 30.0%
! CAAGGCAAACTAAATTTTTG+AGG - chr7_2:71165043-71165062 None:intergenic 30.0%
GTTGTTTATGTAATGGTTGA+AGG + chr7_2:71161693-71161712 Msa1073590:intron 30.0%
TGTTTATGTAATGGTTGAAG+GGG + chr7_2:71161695-71161714 Msa1073590:intron 30.0%
TCACTTCCAAAAATCTCATT+AGG + chr7_2:71161771-71161790 Msa1073590:CDS 30.0%
! CTCGATGATAAGTTTTACAA+TGG + chr7_2:71161854-71161873 Msa1073590:intron 30.0%
! TCTGTTGATTGAACTTAGAT+AGG + chr7_2:71161893-71161912 Msa1073590:intron 30.0%
! CTGTTGATTGAACTTAGATA+GGG + chr7_2:71161894-71161913 Msa1073590:intron 30.0%
! GTTTTGCTTTGATTGATGTT+TGG + chr7_2:71161932-71161951 Msa1073590:intron 30.0%
AAAGGAATTGTTATAGAGCT+TGG + chr7_2:71161960-71161979 Msa1073590:intron 30.0%
!!! TTACTTTTTTGGCGACTTAA+TGG + chr7_2:71162124-71162143 Msa1073590:intron 30.0%
!!! TACTTTTTTGGCGACTTAAT+GGG + chr7_2:71162125-71162144 Msa1073590:intron 30.0%
!!! ATCTGTCATTTTTAGTGTTG+AGG + chr7_2:71162185-71162204 Msa1073590:intron 30.0%
AAGCGATATTACTATGTATC+TGG + chr7_2:71162214-71162233 Msa1073590:intron 30.0%
ATCATTTGGTCTGATATGAA+GGG + chr7_2:71162286-71162305 Msa1073590:intron 30.0%
TCACTGTGTAATCATACAAT+TGG + chr7_2:71162394-71162413 Msa1073590:intron 30.0%
TCAGGAAAAAATTATTGAGG+GGG + chr7_2:71162510-71162529 Msa1073590:intron 30.0%
!! ATGTTTACTTTTGGATTTGG+CGG + chr7_2:71162968-71162987 Msa1073590:intron 30.0%
ATTTAATGAAGTATGTGGCT+TGG - chr7_2:71163029-71163048 None:intergenic 30.0%
GATAAATGAGAAAGACTTGT+TGG - chr7_2:71163063-71163082 None:intergenic 30.0%
!!! TTTTCTGAAGCAATTGTTGA+GGG - chr7_2:71163251-71163270 None:intergenic 30.0%
!!! TTTTTCTGAAGCAATTGTTG+AGG - chr7_2:71163252-71163271 None:intergenic 30.0%
AATCACGCAGAACAAAAATT+TGG - chr7_2:71163345-71163364 None:intergenic 30.0%
!!! GTTACTTTTGTTGCTTTGTT+TGG + chr7_2:71163466-71163485 Msa1073590:intron 30.0%
!!! GGTCTTTTTTGATAGTTTTC+TGG - chr7_2:71163636-71163655 None:intergenic 30.0%
AACTATCAAAAAAGACCCAA+AGG + chr7_2:71163639-71163658 Msa1073590:intron 30.0%
! CAAGTGAAATAATTTTGTGG+AGG + chr7_2:71163768-71163787 Msa1073590:intron 30.0%
GTAACATGATATATACCAAG+TGG + chr7_2:71163806-71163825 Msa1073590:intron 30.0%
TTTGATGCAAGGAAAATCAA+AGG - chr7_2:71164056-71164075 None:intergenic 30.0%
AGATCTCAACACATAATCTT+TGG + chr7_2:71164097-71164116 Msa1073590:intron 30.0%
!!! GTTTTGGTTATGTTTTACAG+AGG + chr7_2:71164137-71164156 Msa1073590:intron 30.0%
!!! GTTTTGGTTATGTTTTACAG+AGG + chr7_2:71164137-71164156 Msa1073590:intron 30.0%
ACAGTTCATAGTGAAAATCT+TGG - chr7_2:71164255-71164274 None:intergenic 30.0%
!! AACCTTTAAGGCTAAACAAA+TGG + chr7_2:71164348-71164367 Msa1073590:intron 30.0%
!! AACCATTTGTTTAGCCTTAA+AGG - chr7_2:71164353-71164372 None:intergenic 30.0%
!! TTGACTTTGACTTGACAATA+TGG + chr7_2:71164555-71164574 Msa1073590:intron 30.0%
! GGTTCATAGATACTTGATTT+TGG - chr7_2:71164681-71164700 None:intergenic 30.0%
ATTCTTGTGATTGAGATCTT+TGG + chr7_2:71164955-71164974 Msa1073590:CDS 30.0%
TTCCAACAATAACTCCAAAT+AGG - chr7_2:71164993-71165012 None:intergenic 30.0%
! CAAGGCAAACTAAATTTTTG+AGG - chr7_2:71165043-71165062 None:intergenic 30.0%
TTGTGTAGTGAGATAGAAAG+AGG - chr7_2:71161428-71161447 None:intergenic 35.0%
!! AGATTTTTGGAAGTGATCCT+TGG - chr7_2:71161767-71161786 None:intergenic 35.0%
TTGCTTTGATTGATGTTTGG+AGG + chr7_2:71161935-71161954 Msa1073590:intron 35.0%
!!! TGTCATTTTTAGTGTTGAGG+AGG + chr7_2:71162188-71162207 Msa1073590:intron 35.0%
GATCATTTGGTCTGATATGA+AGG + chr7_2:71162285-71162304 Msa1073590:intron 35.0%
TGATTACACAGTGAGTTTAG+TGG - chr7_2:71162388-71162407 None:intergenic 35.0%
CAGGAAAAAATTATTGAGGG+GGG + chr7_2:71162511-71162530 Msa1073590:intron 35.0%
AAAAAATTATTGAGGGGGGT+GGG + chr7_2:71162515-71162534 Msa1073590:intron 35.0%
ATTGTTGATCGAGCTCAAAA+TGG + chr7_2:71162842-71162861 Msa1073590:intron 35.0%
TTAGCGGTTCTCATGATAAA+AGG - chr7_2:71162941-71162960 None:intergenic 35.0%
!! TGTTTACTTTTGGATTTGGC+GGG + chr7_2:71162969-71162988 Msa1073590:intron 35.0%
!! TTTCTGAAGCAATTGTTGAG+GGG - chr7_2:71163250-71163269 None:intergenic 35.0%
!! GTTCTGCGTGATTTGTTTAA+AGG + chr7_2:71163352-71163371 Msa1073590:intron 35.0%
CTACATCAATTAAACGACAC+TGG - chr7_2:71163389-71163408 None:intergenic 35.0%
GGTTAATAACTACTACTACC+AGG - chr7_2:71163421-71163440 None:intergenic 35.0%
TTGATTGGCACACCAAAATT+AGG + chr7_2:71163554-71163573 Msa1073590:intron 35.0%
!! TTTGATAGTTTTCTGGTGTC+TGG - chr7_2:71163629-71163648 None:intergenic 35.0%
AAAAAAGACCCAAAGGTCAA+TGG + chr7_2:71163646-71163665 Msa1073590:intron 35.0%
ATTTCCGTAAATTCATGGGT+TGG + chr7_2:71163921-71163940 Msa1073590:intron 35.0%
TTTCCGTAAATTCATGGGTT+GGG + chr7_2:71163922-71163941 Msa1073590:intron 35.0%
TATCCCAACCCATGAATTTA+CGG - chr7_2:71163928-71163947 None:intergenic 35.0%
! ATTTTCCTTGCATCAAAGCA+TGG + chr7_2:71164059-71164078 Msa1073590:intron 35.0%
AAAGCATGGTAAAGTGATTG+TGG + chr7_2:71164073-71164092 Msa1073590:intron 35.0%
! AACACATAATCTTTGGCTTC+TGG + chr7_2:71164104-71164123 Msa1073590:intron 35.0%
!! TATTGGTGTGTGTTTGGTTT+TGG + chr7_2:71164185-71164204 Msa1073590:intron 35.0%
AACGTGAGATTCTTACATGA+TGG - chr7_2:71164322-71164341 None:intergenic 35.0%
! CACGTTTTCTCAAACCTTTA+AGG + chr7_2:71164336-71164355 Msa1073590:intron 35.0%
! TTACATTTGAGTGTTGTGAG+TGG + chr7_2:71164444-71164463 Msa1073590:intron 35.0%
TGTGAAGCTGTTGCTATATA+TGG + chr7_2:71164612-71164631 Msa1073590:CDS 35.0%
TTTGCTTCTGGACTTATTGT+GGG + chr7_2:71164729-71164748 Msa1073590:CDS 35.0%
TTGTGAAGATGTGAATATGC+AGG - chr7_2:71164793-71164812 None:intergenic 35.0%
CATCTTCACAAGAATTCTCA+TGG + chr7_2:71164802-71164821 Msa1073590:intron 35.0%
AGAATTCTCATGGAGAATGT+AGG + chr7_2:71164812-71164831 Msa1073590:intron 35.0%
GAATTCTCATGGAGAATGTA+GGG + chr7_2:71164813-71164832 Msa1073590:intron 35.0%
TATGTAGAACAGGATGGATA+AGG - chr7_2:71164842-71164861 None:intergenic 35.0%
ATTGAGTATGTAGAACAGGA+TGG - chr7_2:71164848-71164867 None:intergenic 35.0%
! AAGAATTTTCACGAAGAGAG+AGG - chr7_2:71164941-71164960 None:intergenic 35.0%
AATACAGCCTACAGTTGTAA+TGG - chr7_2:71165194-71165213 None:intergenic 35.0%
TCTACCAGAGTTGTTATAGA+AGG + chr7_2:71165215-71165234 Msa1073590:three_prime_UTR 35.0%
CTACCAGAGTTGTTATAGAA+GGG + chr7_2:71165216-71165235 Msa1073590:three_prime_UTR 35.0%
TGATATATCTGATGACACAC+AGG - chr7_2:71165242-71165261 None:intergenic 35.0%
TTGTGTAGTGAGATAGAAAG+AGG - chr7_2:71161428-71161447 None:intergenic 35.0%
!! AGATTTTTGGAAGTGATCCT+TGG - chr7_2:71161767-71161786 None:intergenic 35.0%
TTGCTTTGATTGATGTTTGG+AGG + chr7_2:71161935-71161954 Msa1073590:intron 35.0%
!!! TGTCATTTTTAGTGTTGAGG+AGG + chr7_2:71162188-71162207 Msa1073590:intron 35.0%
GATCATTTGGTCTGATATGA+AGG + chr7_2:71162285-71162304 Msa1073590:intron 35.0%
TGATTACACAGTGAGTTTAG+TGG - chr7_2:71162388-71162407 None:intergenic 35.0%
CAGGAAAAAATTATTGAGGG+GGG + chr7_2:71162511-71162530 Msa1073590:intron 35.0%
AAAAAATTATTGAGGGGGGT+GGG + chr7_2:71162515-71162534 Msa1073590:intron 35.0%
ATTGTTGATCGAGCTCAAAA+TGG + chr7_2:71162842-71162861 Msa1073590:intron 35.0%
TTAGCGGTTCTCATGATAAA+AGG - chr7_2:71162941-71162960 None:intergenic 35.0%
!! TGTTTACTTTTGGATTTGGC+GGG + chr7_2:71162969-71162988 Msa1073590:intron 35.0%
!! TTTCTGAAGCAATTGTTGAG+GGG - chr7_2:71163250-71163269 None:intergenic 35.0%
!! GTTCTGCGTGATTTGTTTAA+AGG + chr7_2:71163352-71163371 Msa1073590:intron 35.0%
CTACATCAATTAAACGACAC+TGG - chr7_2:71163389-71163408 None:intergenic 35.0%
GGTTAATAACTACTACTACC+AGG - chr7_2:71163421-71163440 None:intergenic 35.0%
TTGATTGGCACACCAAAATT+AGG + chr7_2:71163554-71163573 Msa1073590:intron 35.0%
!! TTTGATAGTTTTCTGGTGTC+TGG - chr7_2:71163629-71163648 None:intergenic 35.0%
AAAAAAGACCCAAAGGTCAA+TGG + chr7_2:71163646-71163665 Msa1073590:intron 35.0%
ATTTCCGTAAATTCATGGGT+TGG + chr7_2:71163921-71163940 Msa1073590:intron 35.0%
TTTCCGTAAATTCATGGGTT+GGG + chr7_2:71163922-71163941 Msa1073590:intron 35.0%
TATCCCAACCCATGAATTTA+CGG - chr7_2:71163928-71163947 None:intergenic 35.0%
! ATTTTCCTTGCATCAAAGCA+TGG + chr7_2:71164059-71164078 Msa1073590:intron 35.0%
AAAGCATGGTAAAGTGATTG+TGG + chr7_2:71164073-71164092 Msa1073590:intron 35.0%
! AACACATAATCTTTGGCTTC+TGG + chr7_2:71164104-71164123 Msa1073590:intron 35.0%
!! TATTGGTGTGTGTTTGGTTT+TGG + chr7_2:71164185-71164204 Msa1073590:intron 35.0%
AACGTGAGATTCTTACATGA+TGG - chr7_2:71164322-71164341 None:intergenic 35.0%
! CACGTTTTCTCAAACCTTTA+AGG + chr7_2:71164336-71164355 Msa1073590:intron 35.0%
! TTACATTTGAGTGTTGTGAG+TGG + chr7_2:71164444-71164463 Msa1073590:intron 35.0%
TGTGAAGCTGTTGCTATATA+TGG + chr7_2:71164612-71164631 Msa1073590:CDS 35.0%
TTTGCTTCTGGACTTATTGT+GGG + chr7_2:71164729-71164748 Msa1073590:CDS 35.0%
TTGTGAAGATGTGAATATGC+AGG - chr7_2:71164793-71164812 None:intergenic 35.0%
CATCTTCACAAGAATTCTCA+TGG + chr7_2:71164802-71164821 Msa1073590:intron 35.0%
AGAATTCTCATGGAGAATGT+AGG + chr7_2:71164812-71164831 Msa1073590:intron 35.0%
GAATTCTCATGGAGAATGTA+GGG + chr7_2:71164813-71164832 Msa1073590:intron 35.0%
TATGTAGAACAGGATGGATA+AGG - chr7_2:71164842-71164861 None:intergenic 35.0%
ATTGAGTATGTAGAACAGGA+TGG - chr7_2:71164848-71164867 None:intergenic 35.0%
! AAGAATTTTCACGAAGAGAG+AGG - chr7_2:71164941-71164960 None:intergenic 35.0%
AATACAGCCTACAGTTGTAA+TGG - chr7_2:71165194-71165213 None:intergenic 35.0%
TCTACCAGAGTTGTTATAGA+AGG + chr7_2:71165215-71165234 Msa1073590:three_prime_UTR 35.0%
CTACCAGAGTTGTTATAGAA+GGG + chr7_2:71165216-71165235 Msa1073590:three_prime_UTR 35.0%
TGATATATCTGATGACACAC+AGG - chr7_2:71165242-71165261 None:intergenic 35.0%
TGAAGGGGAATTTACATCAC+CGG + chr7_2:71161710-71161729 Msa1073590:intron 40.0%
ATCACCGGTAGTAGTTTGAT+CGG + chr7_2:71161725-71161744 Msa1073590:CDS 40.0%
GATTGATGTTTGGAGGAGAA+AGG + chr7_2:71161942-71161961 Msa1073590:intron 40.0%
!!! TTTTTTGGCGACTTAATGGG+TGG + chr7_2:71162128-71162147 Msa1073590:intron 40.0%
!! TTTTTGGCGACTTAATGGGT+GGG + chr7_2:71162129-71162148 Msa1073590:intron 40.0%
TTACACAGTGAGTTTAGTGG+AGG - chr7_2:71162385-71162404 None:intergenic 40.0%
CTTTGGTCCAATTGTTCTGT+AGG + chr7_2:71162430-71162449 Msa1073590:intron 40.0%
GAAAAAATTATTGAGGGGGG+TGG + chr7_2:71162514-71162533 Msa1073590:intron 40.0%
AAATACACAGAGACGGAACT+AGG - chr7_2:71162625-71162644 None:intergenic 40.0%
TCTATGCATGTAACAGTGAG+TGG + chr7_2:71162732-71162751 Msa1073590:intron 40.0%
CTATGCATGTAACAGTGAGT+GGG + chr7_2:71162733-71162752 Msa1073590:intron 40.0%
! CCAACTACAATGCTACTTAG+CGG - chr7_2:71162879-71162898 None:intergenic 40.0%
! CTAGCTCATTTGGTTTAGTG+TGG + chr7_2:71163106-71163125 Msa1073590:intron 40.0%
TTGATGTAGCTAACTTCACC+TGG + chr7_2:71163400-71163419 Msa1073590:intron 40.0%
TAAGCCAACCATTGACCTTT+GGG - chr7_2:71163657-71163676 None:intergenic 40.0%
TTAAGCCAACCATTGACCTT+TGG - chr7_2:71163658-71163677 None:intergenic 40.0%
CTTTACCATGCTTTGATGCA+AGG - chr7_2:71164067-71164086 None:intergenic 40.0%
!! TTCTGGTGTGTGTTTGGTTT+TGG + chr7_2:71164121-71164140 Msa1073590:intron 40.0%
AAGCTCTATTGGTGTGTGTT+TGG + chr7_2:71164179-71164198 Msa1073590:intron 40.0%
GTTCCATATACAACCGTTTG+TGG + chr7_2:71164529-71164548 Msa1073590:intron 40.0%
TCAAAGTCAAGTGCCACAAA+CGG - chr7_2:71164545-71164564 None:intergenic 40.0%
! CGCTTTCTAATTTTGTCTGC+AGG - chr7_2:71164656-71164675 None:intergenic 40.0%
!! TATCCAGCTCTAAGAGATTC+TGG - chr7_2:71164702-71164721 None:intergenic 40.0%
GGATATGCAATCTTTGCTTC+TGG + chr7_2:71164717-71164736 Msa1073590:CDS 40.0%
CTTTGCTTCTGGACTTATTG+TGG + chr7_2:71164728-71164747 Msa1073590:CDS 40.0%
! GCTTCGCAAATCTTGTTTGT+GGG + chr7_2:71164751-71164770 Msa1073590:CDS 40.0%
AGGTTGTGTGTAGGCATAAT+TGG + chr7_2:71164883-71164902 Msa1073590:intron 40.0%
! GGCCTATTTGGAGTTATTGT+TGG + chr7_2:71164988-71165007 Msa1073590:CDS 40.0%
TTATGTCAGCTCAAGCAACA+TGG + chr7_2:71165016-71165035 Msa1073590:CDS 40.0%
AGTGTGCGGGAATTCAATTA+CGG + chr7_2:71165070-71165089 Msa1073590:three_prime_UTR 40.0%
ATGGACACAAGCTATCATGT+CGG - chr7_2:71165175-71165194 None:intergenic 40.0%
CTTGTGTCCATTACAACTGT+AGG + chr7_2:71165184-71165203 Msa1073590:three_prime_UTR 40.0%
TGAAGGGGAATTTACATCAC+CGG + chr7_2:71161710-71161729 Msa1073590:intron 40.0%
ATCACCGGTAGTAGTTTGAT+CGG + chr7_2:71161725-71161744 Msa1073590:CDS 40.0%
GATTGATGTTTGGAGGAGAA+AGG + chr7_2:71161942-71161961 Msa1073590:intron 40.0%
!!! TTTTTTGGCGACTTAATGGG+TGG + chr7_2:71162128-71162147 Msa1073590:intron 40.0%
!! TTTTTGGCGACTTAATGGGT+GGG + chr7_2:71162129-71162148 Msa1073590:intron 40.0%
TTACACAGTGAGTTTAGTGG+AGG - chr7_2:71162385-71162404 None:intergenic 40.0%
CTTTGGTCCAATTGTTCTGT+AGG + chr7_2:71162430-71162449 Msa1073590:intron 40.0%
GAAAAAATTATTGAGGGGGG+TGG + chr7_2:71162514-71162533 Msa1073590:intron 40.0%
AAATACACAGAGACGGAACT+AGG - chr7_2:71162625-71162644 None:intergenic 40.0%
TCTATGCATGTAACAGTGAG+TGG + chr7_2:71162732-71162751 Msa1073590:intron 40.0%
CTATGCATGTAACAGTGAGT+GGG + chr7_2:71162733-71162752 Msa1073590:intron 40.0%
! CCAACTACAATGCTACTTAG+CGG - chr7_2:71162879-71162898 None:intergenic 40.0%
! CTAGCTCATTTGGTTTAGTG+TGG + chr7_2:71163106-71163125 Msa1073590:intron 40.0%
TTGATGTAGCTAACTTCACC+TGG + chr7_2:71163400-71163419 Msa1073590:intron 40.0%
TAAGCCAACCATTGACCTTT+GGG - chr7_2:71163657-71163676 None:intergenic 40.0%
TTAAGCCAACCATTGACCTT+TGG - chr7_2:71163658-71163677 None:intergenic 40.0%
CTTTACCATGCTTTGATGCA+AGG - chr7_2:71164067-71164086 None:intergenic 40.0%
!! TTCTGGTGTGTGTTTGGTTT+TGG + chr7_2:71164121-71164140 Msa1073590:intron 40.0%
AAGCTCTATTGGTGTGTGTT+TGG + chr7_2:71164179-71164198 Msa1073590:intron 40.0%
GTTCCATATACAACCGTTTG+TGG + chr7_2:71164529-71164548 Msa1073590:intron 40.0%
TCAAAGTCAAGTGCCACAAA+CGG - chr7_2:71164545-71164564 None:intergenic 40.0%
! CGCTTTCTAATTTTGTCTGC+AGG - chr7_2:71164656-71164675 None:intergenic 40.0%
!! TATCCAGCTCTAAGAGATTC+TGG - chr7_2:71164702-71164721 None:intergenic 40.0%
GGATATGCAATCTTTGCTTC+TGG + chr7_2:71164717-71164736 Msa1073590:CDS 40.0%
CTTTGCTTCTGGACTTATTG+TGG + chr7_2:71164728-71164747 Msa1073590:CDS 40.0%
! GCTTCGCAAATCTTGTTTGT+GGG + chr7_2:71164751-71164770 Msa1073590:CDS 40.0%
AGGTTGTGTGTAGGCATAAT+TGG + chr7_2:71164883-71164902 Msa1073590:intron 40.0%
! GGCCTATTTGGAGTTATTGT+TGG + chr7_2:71164988-71165007 Msa1073590:CDS 40.0%
TTATGTCAGCTCAAGCAACA+TGG + chr7_2:71165016-71165035 Msa1073590:CDS 40.0%
AGTGTGCGGGAATTCAATTA+CGG + chr7_2:71165070-71165089 Msa1073590:three_prime_UTR 40.0%
ATGGACACAAGCTATCATGT+CGG - chr7_2:71165175-71165194 None:intergenic 40.0%
CTTGTGTCCATTACAACTGT+AGG + chr7_2:71165184-71165203 Msa1073590:three_prime_UTR 40.0%
TGTTACGTGAGGAGAGGATT+GGG - chr7_2:71161468-71161487 None:intergenic 45.0%
TTGTTACGTGAGGAGAGGAT+TGG - chr7_2:71161469-71161488 None:intergenic 45.0%
ATCGTGATGGTTGTTACGTG+AGG - chr7_2:71161479-71161498 None:intergenic 45.0%
! CCATACACCTTTTCCGCAAT+CGG + chr7_2:71161563-71161582 Msa1073590:CDS 45.0%
!! AGCACCGATCAAACTACTAC+CGG - chr7_2:71161732-71161751 None:intergenic 45.0%
!! TTTGATCGGTGCTGCTATCA+AGG + chr7_2:71161739-71161758 Msa1073590:CDS 45.0%
! TTGGCCACAACAAAGCACTT+TGG + chr7_2:71162413-71162432 Msa1073590:intron 45.0%
! TGGACCAAAGTGCTTTGTTG+TGG - chr7_2:71162420-71162439 None:intergenic 45.0%
! CAATGCTACTTAGCGGTAAC+TGG - chr7_2:71162872-71162891 None:intergenic 45.0%
CCGCTAAGTAGCATTGTAGT+TGG + chr7_2:71162876-71162895 Msa1073590:intron 45.0%
!! TTACTTTTGGATTTGGCGGG+TGG + chr7_2:71162972-71162991 Msa1073590:intron 45.0%
ACCAAATGAGCTAGTGCAGA+GGG - chr7_2:71163100-71163119 None:intergenic 45.0%
AACCAAATGAGCTAGTGCAG+AGG - chr7_2:71163101-71163120 None:intergenic 45.0%
! AGTGTGGTTTGTCCTCCATT+TGG + chr7_2:71163122-71163141 Msa1073590:intron 45.0%
! GTGTGGTTTGTCCTCCATTT+GGG + chr7_2:71163123-71163142 Msa1073590:intron 45.0%
ATGTCACTGGTACACCCAAA+TGG - chr7_2:71163140-71163159 None:intergenic 45.0%
GGTGTACCAGTGACATCAAT+CGG + chr7_2:71163144-71163163 Msa1073590:intron 45.0%
AAGACCCAAAGGTCAATGGT+TGG + chr7_2:71163650-71163669 Msa1073590:intron 45.0%
ACTATCACTCAGCTTCCACT+TGG - chr7_2:71163824-71163843 None:intergenic 45.0%
! TTTGGCTTCTGGTGTGTGTT+TGG + chr7_2:71164115-71164134 Msa1073590:intron 45.0%
GTGCCACAAACGGTTGTATA+TGG - chr7_2:71164535-71164554 None:intergenic 45.0%
GAACCAGAATCTCTTAGAGC+TGG + chr7_2:71164696-71164715 Msa1073590:CDS 45.0%
! GGCTTCGCAAATCTTGTTTG+TGG + chr7_2:71164750-71164769 Msa1073590:CDS 45.0%
TGTTGTTGCAGGTTGTGTGT+AGG + chr7_2:71164874-71164893 Msa1073590:intron 45.0%
TGCCTTGTATCATCAGTGTG+CGG + chr7_2:71165056-71165075 Msa1073590:three_prime_UTR 45.0%
!! TCTCTGCTGCTTATCCCTTT+TGG + chr7_2:71165134-71165153 Msa1073590:three_prime_UTR 45.0%
AGGCCCTTCTATAACAACTC+TGG - chr7_2:71165222-71165241 None:intergenic 45.0%
TGGTCTCGGCAATAAAGTCA+AGG + chr7_2:71165344-71165363 Msa1073590:three_prime_UTR 45.0%
! AGGCTTCAGATGTACTGATG+AGG + chr7_2:71165364-71165383 Msa1073590:three_prime_UTR 45.0%
TGTTACGTGAGGAGAGGATT+GGG - chr7_2:71161468-71161487 None:intergenic 45.0%
TTGTTACGTGAGGAGAGGAT+TGG - chr7_2:71161469-71161488 None:intergenic 45.0%
ATCGTGATGGTTGTTACGTG+AGG - chr7_2:71161479-71161498 None:intergenic 45.0%
! CCATACACCTTTTCCGCAAT+CGG + chr7_2:71161563-71161582 Msa1073590:CDS 45.0%
!! AGCACCGATCAAACTACTAC+CGG - chr7_2:71161732-71161751 None:intergenic 45.0%
!! TTTGATCGGTGCTGCTATCA+AGG + chr7_2:71161739-71161758 Msa1073590:CDS 45.0%
! TTGGCCACAACAAAGCACTT+TGG + chr7_2:71162413-71162432 Msa1073590:intron 45.0%
! TGGACCAAAGTGCTTTGTTG+TGG - chr7_2:71162420-71162439 None:intergenic 45.0%
! CAATGCTACTTAGCGGTAAC+TGG - chr7_2:71162872-71162891 None:intergenic 45.0%
CCGCTAAGTAGCATTGTAGT+TGG + chr7_2:71162876-71162895 Msa1073590:intron 45.0%
!! TTACTTTTGGATTTGGCGGG+TGG + chr7_2:71162972-71162991 Msa1073590:intron 45.0%
ACCAAATGAGCTAGTGCAGA+GGG - chr7_2:71163100-71163119 None:intergenic 45.0%
AACCAAATGAGCTAGTGCAG+AGG - chr7_2:71163101-71163120 None:intergenic 45.0%
! AGTGTGGTTTGTCCTCCATT+TGG + chr7_2:71163122-71163141 Msa1073590:intron 45.0%
! GTGTGGTTTGTCCTCCATTT+GGG + chr7_2:71163123-71163142 Msa1073590:intron 45.0%
ATGTCACTGGTACACCCAAA+TGG - chr7_2:71163140-71163159 None:intergenic 45.0%
GGTGTACCAGTGACATCAAT+CGG + chr7_2:71163144-71163163 Msa1073590:intron 45.0%
AAGACCCAAAGGTCAATGGT+TGG + chr7_2:71163650-71163669 Msa1073590:intron 45.0%
ACTATCACTCAGCTTCCACT+TGG - chr7_2:71163824-71163843 None:intergenic 45.0%
! TTTGGCTTCTGGTGTGTGTT+TGG + chr7_2:71164115-71164134 Msa1073590:intron 45.0%
GTGCCACAAACGGTTGTATA+TGG - chr7_2:71164535-71164554 None:intergenic 45.0%
GAACCAGAATCTCTTAGAGC+TGG + chr7_2:71164696-71164715 Msa1073590:CDS 45.0%
! GGCTTCGCAAATCTTGTTTG+TGG + chr7_2:71164750-71164769 Msa1073590:CDS 45.0%
TGTTGTTGCAGGTTGTGTGT+AGG + chr7_2:71164874-71164893 Msa1073590:intron 45.0%
TGCCTTGTATCATCAGTGTG+CGG + chr7_2:71165056-71165075 Msa1073590:three_prime_UTR 45.0%
!! TCTCTGCTGCTTATCCCTTT+TGG + chr7_2:71165134-71165153 Msa1073590:three_prime_UTR 45.0%
AGGCCCTTCTATAACAACTC+TGG - chr7_2:71165222-71165241 None:intergenic 45.0%
TGGTCTCGGCAATAAAGTCA+AGG + chr7_2:71165344-71165363 Msa1073590:three_prime_UTR 45.0%
! AGGCTTCAGATGTACTGATG+AGG + chr7_2:71165364-71165383 Msa1073590:three_prime_UTR 45.0%
AGAGGATTGGGATCGGATCT+TGG - chr7_2:71161456-71161475 None:intergenic 50.0%
GATGGTTGTTACGTGAGGAG+AGG - chr7_2:71161474-71161493 None:intergenic 50.0%
TGCAGAGCTAGACATCGTGA+TGG - chr7_2:71161492-71161511 None:intergenic 50.0%
TTGCAGCGCATTCAAGCTCT+TGG + chr7_2:71161516-71161535 Msa1073590:CDS 50.0%
TGCAGCGCATTCAAGCTCTT+GGG + chr7_2:71161517-71161536 Msa1073590:CDS 50.0%
! CCGATTGCGGAAAAGGTGTA+TGG - chr7_2:71161566-71161585 None:intergenic 50.0%
ATCGGTATCGCCGTCTCTAT+CGG + chr7_2:71161581-71161600 Msa1073590:CDS 50.0%
AACGGAGACACCGATAGAGA+CGG - chr7_2:71161594-71161613 None:intergenic 50.0%
! TCTATCGGTGTCTCCGTTCT+CGG + chr7_2:71161596-71161615 Msa1073590:CDS 50.0%
TCTAACACGACACAGTGGTG+AGG - chr7_2:71162483-71162502 None:intergenic 50.0%
TCACCACTGTGTCGTGTTAG+AGG + chr7_2:71162482-71162501 Msa1073590:intron 50.0%
AAATTATTGAGGGGGGTGGG+AGG + chr7_2:71162518-71162537 Msa1073590:intron 50.0%
TGCATGTAACAGTGAGTGGG+TGG + chr7_2:71162736-71162755 Msa1073590:intron 50.0%
AGTGCAGAGGGAAGTTGACA+TGG - chr7_2:71163088-71163107 None:intergenic 50.0%
TCCCTCTGCACTAGCTCATT+TGG + chr7_2:71163096-71163115 Msa1073590:intron 50.0%
TCACTGGTACACCCAAATGG+AGG - chr7_2:71163137-71163156 None:intergenic 50.0%
AGACAGCCGATTGATGTCAC+TGG - chr7_2:71163153-71163172 None:intergenic 50.0%
! AAGCCTTATCCCACTCTAGG+TGG - chr7_2:71163713-71163732 None:intergenic 50.0%
! GCTAAGCCTTATCCCACTCT+AGG - chr7_2:71163716-71163735 None:intergenic 50.0%
TGGAACTATTGCTGCTGTGC+AGG - chr7_2:71164515-71164534 None:intergenic 50.0%
!! GAGATCTTTGGTAGTGCGCT+TGG + chr7_2:71164967-71164986 Msa1073590:CDS 50.0%
GCCTTGTATCATCAGTGTGC+GGG + chr7_2:71165057-71165076 Msa1073590:three_prime_UTR 50.0%
TCCCGCACACTGATGATACA+AGG - chr7_2:71165061-71165080 None:intergenic 50.0%
AGAGGATTGGGATCGGATCT+TGG - chr7_2:71161456-71161475 None:intergenic 50.0%
GATGGTTGTTACGTGAGGAG+AGG - chr7_2:71161474-71161493 None:intergenic 50.0%
TGCAGAGCTAGACATCGTGA+TGG - chr7_2:71161492-71161511 None:intergenic 50.0%
TTGCAGCGCATTCAAGCTCT+TGG + chr7_2:71161516-71161535 Msa1073590:CDS 50.0%
TGCAGCGCATTCAAGCTCTT+GGG + chr7_2:71161517-71161536 Msa1073590:CDS 50.0%
! CCGATTGCGGAAAAGGTGTA+TGG - chr7_2:71161566-71161585 None:intergenic 50.0%
ATCGGTATCGCCGTCTCTAT+CGG + chr7_2:71161581-71161600 Msa1073590:CDS 50.0%
AACGGAGACACCGATAGAGA+CGG - chr7_2:71161594-71161613 None:intergenic 50.0%
! TCTATCGGTGTCTCCGTTCT+CGG + chr7_2:71161596-71161615 Msa1073590:CDS 50.0%
TCTAACACGACACAGTGGTG+AGG - chr7_2:71162483-71162502 None:intergenic 50.0%
TCACCACTGTGTCGTGTTAG+AGG + chr7_2:71162482-71162501 Msa1073590:intron 50.0%
AAATTATTGAGGGGGGTGGG+AGG + chr7_2:71162518-71162537 Msa1073590:intron 50.0%
TGCATGTAACAGTGAGTGGG+TGG + chr7_2:71162736-71162755 Msa1073590:intron 50.0%
AGTGCAGAGGGAAGTTGACA+TGG - chr7_2:71163088-71163107 None:intergenic 50.0%
TCCCTCTGCACTAGCTCATT+TGG + chr7_2:71163096-71163115 Msa1073590:intron 50.0%
TCACTGGTACACCCAAATGG+AGG - chr7_2:71163137-71163156 None:intergenic 50.0%
AGACAGCCGATTGATGTCAC+TGG - chr7_2:71163153-71163172 None:intergenic 50.0%
! AAGCCTTATCCCACTCTAGG+TGG - chr7_2:71163713-71163732 None:intergenic 50.0%
! GCTAAGCCTTATCCCACTCT+AGG - chr7_2:71163716-71163735 None:intergenic 50.0%
TGGAACTATTGCTGCTGTGC+AGG - chr7_2:71164515-71164534 None:intergenic 50.0%
!! GAGATCTTTGGTAGTGCGCT+TGG + chr7_2:71164967-71164986 Msa1073590:CDS 50.0%
GCCTTGTATCATCAGTGTGC+GGG + chr7_2:71165057-71165076 Msa1073590:three_prime_UTR 50.0%
TCCCGCACACTGATGATACA+AGG - chr7_2:71165061-71165080 None:intergenic 50.0%
CGTGAGGAGAGGATTGGGAT+CGG - chr7_2:71161463-71161482 None:intergenic 55.0%
! GGCGATACCGATTGCGGAAA+AGG - chr7_2:71161573-71161592 None:intergenic 55.0%
! AGAGACGGCGATACCGATTG+CGG - chr7_2:71161579-71161598 None:intergenic 55.0%
! TTACCAAGCAGCGCCGAGAA+CGG - chr7_2:71161612-71161631 None:intergenic 55.0%
! GTGCTGCTATCAAGGCTCCA+AGG + chr7_2:71161747-71161766 Msa1073590:CDS 55.0%
CCACTGTGTCGTGTTAGAGG+CGG + chr7_2:71162485-71162504 Msa1073590:intron 55.0%
GTCGTGTTAGAGGCGGAATC+AGG + chr7_2:71162492-71162511 Msa1073590:intron 55.0%
ACAGTGAGTGGGTGGTTGTC+TGG + chr7_2:71162744-71162763 Msa1073590:intron 55.0%
CAGTGAGTGGGTGGTTGTCT+GGG + chr7_2:71162745-71162764 Msa1073590:intron 55.0%
TATCCCACTCTAGGTGGCGT+CGG - chr7_2:71163707-71163726 None:intergenic 55.0%
ACGCCACCTAGAGTGGGATA+AGG + chr7_2:71163707-71163726 Msa1073590:intron 55.0%
GGTAGTGCGCTTGGCCTATT+TGG + chr7_2:71164976-71164995 Msa1073590:CDS 55.0%
CGTGAGGAGAGGATTGGGAT+CGG - chr7_2:71161463-71161482 None:intergenic 55.0%
! GGCGATACCGATTGCGGAAA+AGG - chr7_2:71161573-71161592 None:intergenic 55.0%
! AGAGACGGCGATACCGATTG+CGG - chr7_2:71161579-71161598 None:intergenic 55.0%
! TTACCAAGCAGCGCCGAGAA+CGG - chr7_2:71161612-71161631 None:intergenic 55.0%
! GTGCTGCTATCAAGGCTCCA+AGG + chr7_2:71161747-71161766 Msa1073590:CDS 55.0%
CCACTGTGTCGTGTTAGAGG+CGG + chr7_2:71162485-71162504 Msa1073590:intron 55.0%
GTCGTGTTAGAGGCGGAATC+AGG + chr7_2:71162492-71162511 Msa1073590:intron 55.0%
ACAGTGAGTGGGTGGTTGTC+TGG + chr7_2:71162744-71162763 Msa1073590:intron 55.0%
CAGTGAGTGGGTGGTTGTCT+GGG + chr7_2:71162745-71162764 Msa1073590:intron 55.0%
TATCCCACTCTAGGTGGCGT+CGG - chr7_2:71163707-71163726 None:intergenic 55.0%
ACGCCACCTAGAGTGGGATA+AGG + chr7_2:71163707-71163726 Msa1073590:intron 55.0%
GGTAGTGCGCTTGGCCTATT+TGG + chr7_2:71164976-71164995 Msa1073590:CDS 55.0%
CCGCCTCTAACACGACACAG+TGG - chr7_2:71162488-71162507 None:intergenic 60.0%
TAGCCGACGCCACCTAGAGT+GGG + chr7_2:71163701-71163720 Msa1073590:intron 60.0%
CCGCCTCTAACACGACACAG+TGG - chr7_2:71162488-71162507 None:intergenic 60.0%
TAGCCGACGCCACCTAGAGT+GGG + chr7_2:71163701-71163720 Msa1073590:intron 60.0%
CTTGGGCTGCAGCACTCGTC+AGG + chr7_2:71161534-71161553 Msa1073590:CDS 65.0%
TCTCCGTTCTCGGCGCTGCT+TGG + chr7_2:71161606-71161625 Msa1073590:CDS 65.0%
GTAGCCGACGCCACCTAGAG+TGG + chr7_2:71163700-71163719 Msa1073590:intron 65.0%
CTTGGGCTGCAGCACTCGTC+AGG + chr7_2:71161534-71161553 Msa1073590:CDS 65.0%
TCTCCGTTCTCGGCGCTGCT+TGG + chr7_2:71161606-71161625 Msa1073590:CDS 65.0%
GTAGCCGACGCCACCTAGAG+TGG + chr7_2:71163700-71163719 Msa1073590:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 71161389 71165490 71161389 ID=Msa1073590;Name=Msa1073590
chr7_2 mRNA 71161389 71165490 71161389 ID=Msa1073590-mRNA-1;Parent=Msa1073590;Name=Msa1073590-mRNA-1;_AED=0.06;_eAED=0.06;_QI=108|1|1|1|1|1|4|437|182
chr7_2 exon 71161389 71161627 71161389 ID=Msa1073590-mRNA-1:exon:16091;Parent=Msa1073590-mRNA-1
chr7_2 exon 71161715 71161792 71161715 ID=Msa1073590-mRNA-1:exon:16092;Parent=Msa1073590-mRNA-1
chr7_2 exon 71164602 71164772 71164602 ID=Msa1073590-mRNA-1:exon:16093;Parent=Msa1073590-mRNA-1
chr7_2 exon 71164885 71165490 71164885 ID=Msa1073590-mRNA-1:exon:16094;Parent=Msa1073590-mRNA-1
chr7_2 five_prime_UTR 71161389 71161496 71161389 ID=Msa1073590-mRNA-1:five_prime_utr;Parent=Msa1073590-mRNA-1
chr7_2 CDS 71161497 71161627 71161497 ID=Msa1073590-mRNA-1:cds;Parent=Msa1073590-mRNA-1
chr7_2 CDS 71161715 71161792 71161715 ID=Msa1073590-mRNA-1:cds;Parent=Msa1073590-mRNA-1
chr7_2 CDS 71164602 71164772 71164602 ID=Msa1073590-mRNA-1:cds;Parent=Msa1073590-mRNA-1
chr7_2 CDS 71164885 71165053 71164885 ID=Msa1073590-mRNA-1:cds;Parent=Msa1073590-mRNA-1
chr7_2 three_prime_UTR 71165054 71165490 71165054 ID=Msa1073590-mRNA-1:three_prime_utr;Parent=Msa1073590-mRNA-1
Gene Sequence

>Msa1073590

ATGTCTAGCTCTGCAATCATTGCAGCGCATTCAAGCTCTTGGGCTGCAGCACTCGTCAGGATCTCTCCATACACCTTTTCCGCAATCGGTATCGCCGTCTCTATCGGTGTCTCCGTTCTCGGCGCTGCTTGGGGAATTTACATCACCGGTAGTAGTTTGATCGGTGCTGCTATCAAGGCTCCAAGGATCACTTCCAAAAATCTCATTAGTGTAATCTTCTGTGAAGCTGTTGCTATATATGGTGTTATTGTCGCTATTATCCTGCAGACAAAATTAGAAAGCGTTCCAAAATCAAGTATCTATGAACCAGAATCTCTTAGAGCTGGATATGCAATCTTTGCTTCTGGACTTATTGTGGGCTTCGCAAATCTTGTTTGTGGGTTGTGTGTAGGCATAATTGGAAGCAGTTGTGCATTGTCTGATGCTCAGAACTCCTCTCTCTTCGTGAAAATTCTTGTGATTGAGATCTTTGGTAGTGCGCTTGGCCTATTTGGAGTTATTGTTGGAATTATTATGTCAGCTCAAGCAACATGGCCCTCAAAAATTTAG

Protein sequence

>Msa1073590

MSSSAIIAAHSSSWAAALVRISPYTFSAIGIAVSIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPKSSIYEPESLRAGYAIFASGLIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQATWPSKI*