AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0864420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0864420 MtrunA17_Chr5g0446951 99.857 699 1 0 1 699 1 699 0.0 1419
Msa0864420 MtrunA17_Chr5g0446941 99.857 699 1 0 1 699 1 699 0.0 1419
Msa0864420 MtrunA17_Chr6g0469201 88.160 701 79 3 1 699 1 699 0.0 1186
Msa0864420 MtrunA17_Chr1g0202601 83.429 700 92 3 1 699 6 682 0.0 1110
Msa0864420 MtrunA17_Chr1g0156731 48.867 706 320 8 5 673 78 779 0.0 642
Msa0864420 MtrunA17_Chr5g0447581 45.562 676 345 10 5 667 90 755 0.0 577
Msa0864420 MtrunA17_Chr5g0420861 45.634 710 354 13 5 698 82 775 0.0 577
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0864420 AT5G56000.1 90.714 700 63 2 1 699 1 699 0.0 1205
Msa0864420 AT5G56030.1 92.286 700 52 2 1 699 1 699 0.0 1196
Msa0864420 AT5G56010.1 92.000 700 54 2 1 699 1 699 0.0 1194
Msa0864420 AT5G56030.2 88.615 729 52 3 1 699 1 728 0.0 1181
Msa0864420 AT5G52640.1 85.185 702 99 5 1 699 1 700 0.0 1148
Msa0864420 AT4G24190.1 50.356 703 310 8 5 672 77 775 0.0 643
Msa0864420 AT4G24190.2 50.356 703 310 8 5 672 77 775 0.0 642
Msa0864420 AT2G04030.1 47.485 676 329 11 5 668 77 738 0.0 597
Msa0864420 AT3G07770.1 45.495 677 346 10 5 668 95 761 0.0 590
Msa0864420 AT3G07770.3 45.495 677 346 10 5 668 95 761 0.0 590
Msa0864420 AT3G07770.2 45.495 677 346 10 5 668 95 761 0.0 590
Msa0864420 AT2G04030.2 47.033 674 332 11 5 668 77 735 0.0 588

Find 196 sgRNAs with CRISPR-Local

Find 255 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGGGACAGTTGGAGTTTA+AGG 0.160886 5_4:+64796429 Msa0864420:CDS
AATCTCCTTGTTACTGTAAA+AGG 0.195492 5_4:-64794677 None:intergenic
TTCGCAACGAATATTAATTT+AGG 0.229845 5_4:-64797907 None:intergenic
GAGACTGCTCTTCTTACTTC+TGG 0.243959 5_4:+64797438 Msa0864420:CDS
TTTCCTCAGCTCCTCCATTA+TGG 0.246479 5_4:-64797358 None:intergenic
TAAACAAGCAGAAGCCTATT+TGG 0.252348 5_4:+64796305 Msa0864420:CDS
ACAAGAGACGTTTGCTTTCC+AGG 0.252769 5_4:+64794618 Msa0864420:CDS
TTCTCAACCCAAAGAGAAAT+TGG 0.256773 5_4:-64796136 None:intergenic
TTAGCTATCCAATTTCTCTT+TGG 0.269210 5_4:+64796128 Msa0864420:CDS
TTCCTCAGCTCCTCCATTAT+GGG 0.271018 5_4:-64797357 None:intergenic
CTTGATGAGCCCAACACTTT+TGG 0.271765 5_4:+64797468 Msa0864420:CDS
TAGCTATCCAATTTCTCTTT+GGG 0.282969 5_4:+64796129 Msa0864420:CDS
ACTATCATTGATAGTGGAAT+TGG 0.289715 5_4:+64795643 Msa0864420:CDS
GTGTTAATTGTGACTATCTT+TGG 0.300881 5_4:+64797781 Msa0864420:three_prime_UTR
CTCCTCCATTATGGGGTTCT+CGG 0.308210 5_4:-64797349 None:intergenic
TTGTTCCGCCATTGCCGATC+TGG 0.322186 5_4:-64794599 None:intergenic
CAATGATTGGGAAGAGCATT+TGG 0.340719 5_4:+64796387 Msa0864420:CDS
TCCTCCATTATGGGGTTCTC+GGG 0.353116 5_4:-64797348 None:intergenic
TGAAGTAGTTTCTATTGTTT+AGG 0.357932 5_4:+64797627 Msa0864420:three_prime_UTR
TGTTTAGTGACTGGTGAGTA+TGG 0.358330 5_4:+64797228 Msa0864420:CDS
AACGACATTTACTACATTAC+CGG 0.367880 5_4:+64796901 Msa0864420:CDS
TCATGCTAACTTACCAGCTT+TGG 0.369152 5_4:-64795671 None:intergenic
TCAGGCTTCCTCATCCAAAT+AGG 0.372502 5_4:-64796319 None:intergenic
GACATACAGCTTGATGTTGT+TGG 0.373069 5_4:-64796509 None:intergenic
GTCTGGTACCAAGGAATTCA+TGG 0.376590 5_4:+64795820 Msa0864420:CDS
ACAAGAGTCTCACCAATGAT+TGG 0.384273 5_4:+64796374 Msa0864420:CDS
ACATACAGCTTGATGTTGTT+GGG 0.394439 5_4:-64796508 None:intergenic
TGTTTGCTCATCGTAAGTTC+TGG 0.395191 5_4:+64797759 Msa0864420:three_prime_UTR
AAGGTGTTGTTGGTCTTGTC+AGG 0.401362 5_4:-64795619 None:intergenic
TCAACAGAACAAGATTCTTA+AGG 0.404319 5_4:+64796645 Msa0864420:CDS
GAAGAAGGAAGAGGAGGGTA+AGG 0.417477 5_4:+64796201 Msa0864420:CDS
GTGAGTATGATTGGACAGTT+TGG 0.425748 5_4:+64795866 Msa0864420:CDS
GGTGTCTAATGAATGGTCTT+TGG 0.428079 5_4:+64796282 Msa0864420:CDS
CGAGGAAGAGAAGAAGGAAG+AGG 0.429375 5_4:+64796192 Msa0864420:CDS
GGTCATGTCATCACCACTCT+TGG 0.434025 5_4:-64796839 None:intergenic
GGAAGAGGAGGGTAAGGTTG+AGG 0.435286 5_4:+64796207 Msa0864420:CDS
CATGAAGGCACAGGCTTTGA+GGG 0.435413 5_4:+64797275 Msa0864420:CDS
ACAAGATTCTTAAGGTCATC+AGG 0.437555 5_4:+64796653 Msa0864420:CDS
CAACCCCGAGAACCCCATAA+TGG 0.440515 5_4:+64797344 Msa0864420:CDS
TTTGTGTCAAAGAGATCAAA+AGG 0.446679 5_4:-64796478 None:intergenic
CTAGTGTCTGCAACTAAAGA+AGG 0.450314 5_4:+64797057 Msa0864420:CDS
AATGATAGTCAAGGTGTTGT+TGG 0.456218 5_4:-64795629 None:intergenic
CCTTGAGAAGCTTAGGAAGA+AGG 0.459680 5_4:+64796957 Msa0864420:CDS
CAAGAGTCTCACCAATGATT+GGG 0.462392 5_4:+64796375 Msa0864420:CDS
CAAATGCTCTTCCCAATCAT+TGG 0.463958 5_4:-64796386 None:intergenic
TCGTCCTTTGTGATCTCCTC+AGG 0.466562 5_4:-64796337 None:intergenic
TGGTCAGCTCAAGGAATTTG+AGG 0.468755 5_4:+64797026 Msa0864420:CDS
TTGAGGGATAGCAGCATGGC+TGG 0.470021 5_4:+64797291 Msa0864420:CDS
GGTGGTAACAATAACCTTCT+CGG 0.473999 5_4:-64795918 None:intergenic
ACCTTGACTATCATTGATAG+TGG 0.474059 5_4:+64795637 Msa0864420:CDS
TCATGAAGGCACAGGCTTTG+AGG 0.476598 5_4:+64797274 Msa0864420:CDS
TATGGCTTCCATGAATTCCT+TGG 0.477216 5_4:-64795828 None:intergenic
GGTGCTGATGTGAGTATGAT+TGG 0.477447 5_4:+64795857 Msa0864420:CDS
AGTGAATGACCCACCAGCTT+GGG 0.479426 5_4:-64795975 None:intergenic
TGAGGACGAGGAAGAGAAGA+AGG 0.480741 5_4:+64796186 Msa0864420:CDS
AGAATCAAGCTTGCTCTTGT+CGG 0.482487 5_4:-64795569 None:intergenic
AGATCAAAAGGTGCTCTCTT+CGG 0.483306 5_4:-64796466 None:intergenic
CAACTGGTGAAGCTCTTGGC+AGG 0.483720 5_4:+64796011 Msa0864420:CDS
CTTTGAAATTGCTGAGAACA+AGG 0.486596 5_4:+64796708 Msa0864420:CDS
GGAAGAGAAGAAGGAAGAGG+AGG 0.487208 5_4:+64796195 Msa0864420:CDS
TGTTAAGCACTTCTCTGTTG+AGG 0.488225 5_4:+64796411 Msa0864420:CDS
CATGTCATCACCACTCTTGG+TGG 0.488480 5_4:-64796836 None:intergenic
GTTAAGCACTTCTCTGTTGA+GGG 0.489262 5_4:+64796412 Msa0864420:CDS
CAAAGCTTGCTGATTTGCTC+AGG 0.489387 5_4:+64796806 Msa0864420:CDS
ATTTCTCTTGAAATGTTAAG+TGG 0.491469 5_4:-64796619 None:intergenic
CTTCTCTAAGAACTTGAAGC+TGG 0.492825 5_4:+64796756 Msa0864420:CDS
TAGCTTTGTGAAGGGTATTG+TGG 0.493429 5_4:+64796582 Msa0864420:CDS
ATGATTGGACAGTTTGGTGT+TGG 0.493545 5_4:+64795872 Msa0864420:CDS
GGAACGCCGTCTGAAGGACT+TGG 0.493605 5_4:+64796084 Msa0864420:CDS
AACAGCTTTCTTGCTTTCAC+CGG 0.494202 5_4:-64796920 None:intergenic
CTTCTCTGTTGAGGGACAGT+TGG 0.494681 5_4:+64796420 Msa0864420:CDS
CTTCCTAAGCTTCTCAAGGA+AGG 0.495109 5_4:-64796953 None:intergenic
CAATCTTTGCAAGGTGATCA+AGG 0.496155 5_4:+64797143 Msa0864420:CDS
GTAGTTTCTATTGTTTAGGA+AGG 0.496454 5_4:+64797631 Msa0864420:three_prime_UTR
AGCTTCACCAGTTGTATCCC+TGG 0.498334 5_4:-64796002 None:intergenic
AGTAGATGAGGAGAAAGAAA+AGG 0.499471 5_4:+64796231 Msa0864420:CDS
GGGTGACAAGGTTGAGAAAG+TGG 0.499707 5_4:+64797173 Msa0864420:CDS
CTTCACAAAGCTAAGATACT+CGG 0.499785 5_4:-64796572 None:intergenic
TTCATCATCATTGTGCTTGG+TGG 0.500075 5_4:-64795936 None:intergenic
GGAATTGGAATGACCAAAGC+TGG 0.500501 5_4:+64795658 Msa0864420:CDS
GTTCTGTCCTTCCTTCATCC+TGG 0.501478 5_4:-64796881 None:intergenic
GATACAACTGGTGAAGCTCT+TGG 0.501895 5_4:+64796007 Msa0864420:CDS
CTAGGTACCATTGCTAGGTC+TGG 0.502477 5_4:+64795803 Msa0864420:CDS
TGCTTACCTTGTTGCCGAGA+AGG 0.502623 5_4:+64795904 Msa0864420:CDS
GAAGAGAAGAAGGAAGAGGA+GGG 0.502813 5_4:+64796196 Msa0864420:CDS
TCTCCTTGCTGTTTAGTGAC+TGG 0.506819 5_4:+64797219 Msa0864420:CDS
CTTGAGAAGCTTAGGAAGAA+GGG 0.508184 5_4:+64796958 Msa0864420:CDS
CAAGGTGATCAAGGAGGTGT+TGG 0.509412 5_4:+64797152 Msa0864420:CDS
TTCCTAAGCTTCTCAAGGAA+GGG 0.510661 5_4:-64796952 None:intergenic
GTGGGTCATTCACTGTGACC+AGG 0.512028 5_4:+64795984 Msa0864420:CDS
TCCTAAGCTTCTCAAGGAAG+GGG 0.515007 5_4:-64796951 None:intergenic
TAAGGTCATCAGGAAGAACT+TGG 0.516506 5_4:+64796663 Msa0864420:CDS
CACATCAGCACCAGCAGCTA+TGG 0.520326 5_4:-64795846 None:intergenic
CTTCATGATCCTCTCCATGT+TGG 0.521693 5_4:-64797259 None:intergenic
TGCTGACATGCCACCATTGG+AGG 0.530142 5_4:+64797554 Msa0864420:CDS
ATCCTGTTGCCAAAAGTGTT+GGG 0.532827 5_4:-64797477 None:intergenic
ATTCACAGGATGCTCAAGCT+TGG 0.534491 5_4:+64797498 Msa0864420:CDS
TCAGCATCAGCTTCCTCCAA+TGG 0.535356 5_4:-64797567 None:intergenic
CATTGCTAGGTCTGGTACCA+AGG 0.535688 5_4:+64795811 Msa0864420:CDS
TTAAGGAGGTGTCTAATGAA+TGG 0.538054 5_4:+64796275 Msa0864420:CDS
AATCCTGTTGCCAAAAGTGT+TGG 0.544511 5_4:-64797478 None:intergenic
CTGTTCATCATCATTGTGCT+TGG 0.544768 5_4:-64795939 None:intergenic
TGATGCTGACATGCCACCAT+TGG 0.545200 5_4:+64797551 Msa0864420:CDS
TAAGGTTGAGGAAGTAGATG+AGG 0.545318 5_4:+64796219 Msa0864420:CDS
CGAGTATCTTAGCTTTGTGA+AGG 0.545418 5_4:+64796573 Msa0864420:CDS
TTCATGGAAGCCATAGCTGC+TGG 0.547466 5_4:+64795836 Msa0864420:CDS
GGTCAGCTCAAGGAATTTGA+GGG 0.548038 5_4:+64797027 Msa0864420:CDS
TCCTCAGCTCCTCCATTATG+GGG 0.548965 5_4:-64797356 None:intergenic
ACCAACAGCATATTCATCAA+TGG 0.549314 5_4:-64797007 None:intergenic
GTGTGGGAGTCCCAAGCTGG+TGG 0.550695 5_4:+64795965 Msa0864420:CDS
GGAGAGGATCATGAAGGCAC+AGG 0.554892 5_4:+64797266 Msa0864420:CDS
CCTTCTTCCTAAGCTTCTCA+AGG 0.555668 5_4:-64796957 None:intergenic
CAGCTTCAAGTTCTTAGAGA+AGG 0.556190 5_4:-64796755 None:intergenic
GGAAACGTGCTGATGCGGAC+AGG 0.560251 5_4:+64797376 Msa0864420:CDS
TAAAATAACTCTCATCCTCA+AGG 0.561419 5_4:+64796039 Msa0864420:CDS
TAGTGACTGGTGAGTATGGT+TGG 0.563826 5_4:+64797232 Msa0864420:CDS
CCAGATTTGGTGAACAACCT+AGG 0.564348 5_4:+64795785 Msa0864420:intron
CAGTGAATGACCCACCAGCT+TGG 0.566153 5_4:-64795976 None:intergenic
GGACTATGTTACCAGGATGA+AGG 0.567325 5_4:+64796870 Msa0864420:CDS
GAAAGAGATTTCTGATGATG+AGG 0.568419 5_4:+64796168 Msa0864420:CDS
TCTTGAGGAACGCCGTCTGA+AGG 0.568654 5_4:+64796078 Msa0864420:CDS
CAAAAGTGTTGGGCTCATCA+AGG 0.569013 5_4:-64797467 None:intergenic
ATAATGTGAATGAACAACTC+TGG 0.569519 5_4:-64795595 None:intergenic
ACTGTGACCAGGGATACAAC+TGG 0.570046 5_4:+64795995 Msa0864420:CDS
AGAGGGAAGCAAGATGGAAG+AGG 0.571151 5_4:+64797593 Msa0864420:CDS
CAATAACCTTCTCGGCAACA+AGG 0.573151 5_4:-64795910 None:intergenic
TTCTCTAAGAACTTGAAGCT+GGG 0.573524 5_4:+64796757 Msa0864420:CDS
TGGGTCATTCACTGTGACCA+GGG 0.573714 5_4:+64795985 Msa0864420:CDS
CAAGGAGGTGTTGGGTGACA+AGG 0.575150 5_4:+64797161 Msa0864420:CDS
GGTAACATAGTCCTTGAGGC+TGG 0.577318 5_4:-64796860 None:intergenic
GGGATATGAAGTGATTTACA+TGG 0.578493 5_4:+64796978 Msa0864420:CDS
ACAACCTAGGTACCATTGCT+AGG 0.579010 5_4:+64795798 Msa0864420:CDS
TCTCAAACAGCAAGAGAACA+AGG 0.580225 5_4:-64797419 None:intergenic
TGTCGGTCAAGCCCTCAAAA+CGG 0.582332 5_4:-64795552 None:intergenic
CTATTGTTTAGGAAGGTGTG+AGG 0.582863 5_4:+64797638 Msa0864420:three_prime_UTR
AGCAGAAGCCTATTTGGATG+AGG 0.584932 5_4:+64796311 Msa0864420:CDS
ACTGGTGAAGCTCTTGGCAG+GGG 0.584964 5_4:+64796013 Msa0864420:CDS
GAAGTTGATTGATCTCAGCC+TGG 0.587212 5_4:-64794636 None:intergenic
AACTGGTGAAGCTCTTGGCA+GGG 0.587596 5_4:+64796012 Msa0864420:CDS
GCTGAGGAAACGTGCTGATG+CGG 0.588607 5_4:+64797371 Msa0864420:CDS
TTCACAAAGCTAAGATACTC+GGG 0.588682 5_4:-64796571 None:intergenic
CAGACCTAGCAATGGTACCT+AGG 0.590700 5_4:-64795802 None:intergenic
CATCACCACTCTTGGTGGAG+TGG 0.592725 5_4:-64796831 None:intergenic
GGCTTTGAGGGATAGCAGCA+TGG 0.597369 5_4:+64797287 Msa0864420:CDS
AGATTACAACAAGTTCTATG+AGG 0.599707 5_4:+64796732 Msa0864420:CDS
ATATGCTGTTGGTCAGCTCA+AGG 0.599835 5_4:+64797017 Msa0864420:CDS
GAAGTTCGACAATCTTTGCA+AGG 0.601872 5_4:+64797134 Msa0864420:CDS
GAAGCTGATGCTGATGCAGA+GGG 0.602230 5_4:+64797576 Msa0864420:CDS
ACCCCATAATGGAGGAGCTG+AGG 0.602360 5_4:+64797355 Msa0864420:CDS
TGATGCAGAGGGAAGCAAGA+TGG 0.604134 5_4:+64797587 Msa0864420:CDS
GATTTCTGATGATGAGGACG+AGG 0.608743 5_4:+64796174 Msa0864420:CDS
TCCTGGTAACATAGTCCTTG+AGG 0.608835 5_4:-64796864 None:intergenic
TAGTGTCTGCAACTAAAGAA+GGG 0.609080 5_4:+64797058 Msa0864420:CDS
GCCTCAAGGACTATGTTACC+AGG 0.610223 5_4:+64796863 Msa0864420:CDS
CATGTCAAGCAAGAAGACAA+TGG 0.611061 5_4:+64797317 Msa0864420:CDS
TATGTGTGGGAGTCCCAAGC+TGG 0.615041 5_4:+64795962 Msa0864420:CDS
TCCACTATCAATGATAGTCA+AGG 0.615433 5_4:-64795638 None:intergenic
GCCATTGATGAATATGCTGT+TGG 0.617134 5_4:+64797006 Msa0864420:CDS
GCTTGGTCTTAGCATTGATG+AGG 0.619021 5_4:+64797515 Msa0864420:CDS
CAACATGGAGAGGATCATGA+AGG 0.620851 5_4:+64797260 Msa0864420:CDS
CCTCCATTATGGGGTTCTCG+GGG 0.620923 5_4:-64797347 None:intergenic
GTTGAAACTTGACGAGAGTG+AGG 0.621123 5_4:+64797080 Msa0864420:CDS
TGAGCAAACAATAGCTACAC+TGG 0.624684 5_4:-64797746 None:intergenic
GGATCAACTTGAGTATCTTG+AGG 0.629396 5_4:+64796063 Msa0864420:CDS
GAGTATCTTAGCTTTGTGAA+GGG 0.631738 5_4:+64796574 Msa0864420:CDS
AGCAAGGAGAATCGACAACA+CGG 0.631988 5_4:-64797206 None:intergenic
AGGTACCACTCCACCAAGAG+TGG 0.636721 5_4:+64796826 Msa0864420:CDS
CAGGAATGACAAATCTGTCA+AGG 0.640894 5_4:+64797395 Msa0864420:CDS
GTATGGTTGGACTGCCAACA+TGG 0.641083 5_4:+64797245 Msa0864420:CDS
ACTCAAGTTGATCCTCCTTG+AGG 0.641638 5_4:-64796054 None:intergenic
TCTTAACCAAGTCCTTCAGA+CGG 0.644789 5_4:-64796090 None:intergenic
TGTGGGAGTCCCAAGCTGGT+GGG 0.646830 5_4:+64795966 Msa0864420:CDS
GCATCAGCTTCCTCCAATGG+TGG 0.651686 5_4:-64797564 None:intergenic
CCCCGAGAACCCCATAATGG+AGG 0.653113 5_4:+64797347 Msa0864420:CDS
AAGGTGATCAAGGAGGTGTT+GGG 0.654251 5_4:+64797153 Msa0864420:CDS
TGATGACATGACCAGCCTCA+AGG 0.657377 5_4:+64796849 Msa0864420:CDS
CCTAAGCTTCTCAAGGAAGG+GGG 0.664638 5_4:-64796950 None:intergenic
GTTGGACTGCCAACATGGAG+AGG 0.668192 5_4:+64797250 Msa0864420:CDS
ATTTCAGGAACGAAATAACA+AGG 0.670109 5_4:-64797857 None:intergenic
TATGTTACCAGGATGAAGGA+AGG 0.670222 5_4:+64796874 Msa0864420:CDS
GGAAGCTGATGCTGATGCAG+AGG 0.671926 5_4:+64797575 Msa0864420:CDS
ATGATGATGAACAGTATGTG+TGG 0.676362 5_4:+64795948 Msa0864420:CDS
AGTTGTCCATGATGAAAACA+CGG 0.681053 5_4:-64796534 None:intergenic
TCACCAGTCACTAAACAGCA+AGG 0.682332 5_4:-64797222 None:intergenic
GAAGGGTATTGTGGACTCTG+AGG 0.693168 5_4:+64796591 Msa0864420:CDS
CTTGAAGCTGGGTATCCATG+AGG 0.697436 5_4:+64796768 Msa0864420:CDS
AATAACTCTCATCCTCAAGG+AGG 0.699652 5_4:+64796042 Msa0864420:CDS
CTTGGTACCAGACCTAGCAA+TGG 0.700707 5_4:-64795810 None:intergenic
CAATTTCAAAGAAAAGCTCG+AGG 0.701411 5_4:-64796696 None:intergenic
TTTCATCATGGACAACTGTG+AGG 0.702798 5_4:+64796540 Msa0864420:CDS
GAAGCCTGAGGAGATCACAA+AGG 0.711808 5_4:+64796333 Msa0864420:CDS
TGATGATGAACAGTATGTGT+GGG 0.717373 5_4:+64795949 Msa0864420:CDS
TATTTGGATGAGGAAGCCTG+AGG 0.739589 5_4:+64796321 Msa0864420:CDS
GGTGCTACGAGCAAAGAACG+CGG 0.760872 5_4:-64797836 None:intergenic
TCTTTGCAAGGTGATCAAGG+AGG 0.803604 5_4:+64797146 Msa0864420:CDS
TGTCCATGATGAAAACACGG+CGG 0.827708 5_4:-64796531 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTATTATTTTATCAATTTTA+GGG + chr5_4:64794846-64794865 Msa0864420:intron 10.0%
!! TAATTGATTATATATTTGTT+AGG + chr5_4:64794876-64794895 Msa0864420:intron 10.0%
!!! AATTGATTATATATTTGTTA+GGG + chr5_4:64794877-64794896 Msa0864420:intron 10.0%
!! TTAAAATTCAATTTCAATTT+GGG - chr5_4:64795116-64795135 None:intergenic 10.0%
!! ATTAAAATTCAATTTCAATT+TGG - chr5_4:64795117-64795136 None:intergenic 10.0%
!!! AAATTGAATTTTAATTAGTT+CGG + chr5_4:64795122-64795141 Msa0864420:intron 10.0%
!!! TTGTCTTTATTTTTAAATTT+TGG + chr5_4:64797687-64797706 Msa0864420:three_prime_UTR 10.0%
!!! TTTTTTTCTTTTTGTTTCTT+AGG + chr5_4:64794755-64794774 Msa0864420:intron 15.0%
!!! TTTTTTCTTTTTGTTTCTTA+GGG + chr5_4:64794756-64794775 Msa0864420:intron 15.0%
!!! TGATTATGATGAATTTTTTT+CGG + chr5_4:64794808-64794827 Msa0864420:intron 15.0%
!!! GGTATTATTTTATCAATTTT+AGG + chr5_4:64794845-64794864 Msa0864420:intron 15.0%
!! ACTTTCATTCATATAATTAA+AGG - chr5_4:64795226-64795245 None:intergenic 15.0%
!!! TAACTCTTTAATTTTTTGAA+TGG + chr5_4:64795278-64795297 Msa0864420:intron 15.0%
!!! ATTCAATTCTAAAACTAAAA+GGG - chr5_4:64795316-64795335 None:intergenic 15.0%
!!! AATTCAATTCTAAAACTAAA+AGG - chr5_4:64795317-64795336 None:intergenic 15.0%
!! ACTTTCTTTCAAAAAATTAA+AGG - chr5_4:64795349-64795368 None:intergenic 15.0%
!! TCAACTATGAAACATATATT+CGG - chr5_4:64795067-64795086 None:intergenic 20.0%
!! AAAAATAGATCACATGATTA+GGG - chr5_4:64795164-64795183 None:intergenic 20.0%
!! AAAAAATAGATCACATGATT+AGG - chr5_4:64795165-64795184 None:intergenic 20.0%
!!! TTTTTTGAAAGAAAGTTGTT+TGG + chr5_4:64795353-64795372 Msa0864420:intron 20.0%
!!! TTTTTGAAAGAAAGTTGTTT+GGG + chr5_4:64795354-64795373 Msa0864420:intron 20.0%
!! TATAATTGTTACTAATGCTT+TGG + chr5_4:64795413-64795432 Msa0864420:intron 20.0%
!! TGTTGTTCTGATTATTATAT+TGG + chr5_4:64795500-64795519 Msa0864420:intron 20.0%
!! GTTGTTCTGATTATTATATT+GGG + chr5_4:64795501-64795520 Msa0864420:intron 20.0%
!!! TTTTATTAGATGCAATTTTC+TGG + chr5_4:64797722-64797741 Msa0864420:three_prime_UTR 20.0%
!! TTTTCGGTTATGATTCTTAT+TGG + chr5_4:64794824-64794843 Msa0864420:intron 25.0%
!!! ATGATTTGTTAGTCATGTTT+AGG + chr5_4:64794966-64794985 Msa0864420:intron 25.0%
!!! GTTTTAGAATTGAATTTGCA+TGG + chr5_4:64795321-64795340 Msa0864420:intron 25.0%
!! GTTATTGTCAATGTTATTTG+AGG + chr5_4:64795390-64795409 Msa0864420:intron 25.0%
! TAATGATGATTTAGTTGTTG+TGG + chr5_4:64795470-64795489 Msa0864420:intron 25.0%
! AATGATGATTTAGTTGTTGT+GGG + chr5_4:64795471-64795490 Msa0864420:intron 25.0%
! GAAGAAAAAGAAGAAGATTA+AGG + chr5_4:64796258-64796277 Msa0864420:CDS 25.0%
! ATTTCTCTTGAAATGTTAAG+TGG - chr5_4:64796622-64796641 None:intergenic 25.0%
! TGAAGTAGTTTCTATTGTTT+AGG + chr5_4:64797627-64797646 Msa0864420:three_prime_UTR 25.0%
!!! TTCCTGAAATACACTTTTTT+AGG + chr5_4:64797870-64797889 Msa0864420:three_prime_UTR 25.0%
!!! TCCTGAAATACACTTTTTTA+GGG + chr5_4:64797871-64797890 Msa0864420:three_prime_UTR 25.0%
AATCTCCTTGTTACTGTAAA+AGG - chr5_4:64794680-64794699 None:intergenic 30.0%
AAAAGAAAAAAAGAGCGAAG+AGG - chr5_4:64794747-64794766 None:intergenic 30.0%
! TACTGTGTAACATTTTCACT+TGG + chr5_4:64795186-64795205 Msa0864420:intron 30.0%
AAGAGTTATTATGACTAACG+TGG - chr5_4:64795266-64795285 None:intergenic 30.0%
!! GAATATCAGTGTTGGATTTT+TGG + chr5_4:64795435-64795454 Msa0864420:intron 30.0%
ATAATGTGAATGAACAACTC+TGG - chr5_4:64795598-64795617 None:intergenic 30.0%
!! ACTATCATTGATAGTGGAAT+TGG + chr5_4:64795643-64795662 Msa0864420:CDS 30.0%
!!! CTTTTTTCTGAGTCTGTAAT+TGG + chr5_4:64795695-64795714 Msa0864420:intron 30.0%
CTGTATTTATGTTCCAGATT+TGG + chr5_4:64795772-64795791 Msa0864420:intron 30.0%
TAAAATAACTCTCATCCTCA+AGG + chr5_4:64796039-64796058 Msa0864420:CDS 30.0%
TTAGCTATCCAATTTCTCTT+TGG + chr5_4:64796128-64796147 Msa0864420:CDS 30.0%
TAGCTATCCAATTTCTCTTT+GGG + chr5_4:64796129-64796148 Msa0864420:CDS 30.0%
GAAAAAGAAGAAGATTAAGG+AGG + chr5_4:64796261-64796280 Msa0864420:CDS 30.0%
TTTGTGTCAAAGAGATCAAA+AGG - chr5_4:64796481-64796500 None:intergenic 30.0%
TCAACAGAACAAGATTCTTA+AGG + chr5_4:64796645-64796664 Msa0864420:CDS 30.0%
AGATTACAACAAGTTCTATG+AGG + chr5_4:64796732-64796751 Msa0864420:CDS 30.0%
AACGACATTTACTACATTAC+CGG + chr5_4:64796901-64796920 Msa0864420:CDS 30.0%
TGAGGATGAAAAGAAAAAGA+TGG + chr5_4:64797098-64797117 Msa0864420:CDS 30.0%
GTAGTTTCTATTGTTTAGGA+AGG + chr5_4:64797631-64797650 Msa0864420:three_prime_UTR 30.0%
GTGTTAATTGTGACTATCTT+TGG + chr5_4:64797781-64797800 Msa0864420:three_prime_UTR 30.0%
ATTTCAGGAACGAAATAACA+AGG - chr5_4:64797860-64797879 None:intergenic 30.0%
! ACCCTAAAAAAGTGTATTTC+AGG - chr5_4:64797875-64797894 None:intergenic 30.0%
! CAACACCTTTTACAGTAACA+AGG + chr5_4:64794672-64794691 Msa0864420:CDS 35.0%
!! ATGCTTTGGAATATCAGTGT+TGG + chr5_4:64795427-64795446 Msa0864420:intron 35.0%
ATATTGGGATGCTGTAATGT+AGG + chr5_4:64795516-64795535 Msa0864420:intron 35.0%
! TTTGGATAAGATCCGTTTTG+AGG + chr5_4:64795540-64795559 Msa0864420:CDS 35.0%
! TTGGATAAGATCCGTTTTGA+GGG + chr5_4:64795541-64795560 Msa0864420:CDS 35.0%
!! AATGATAGTCAAGGTGTTGT+TGG - chr5_4:64795632-64795651 None:intergenic 35.0%
ACCTTGACTATCATTGATAG+TGG + chr5_4:64795637-64795656 Msa0864420:CDS 35.0%
TCCACTATCAATGATAGTCA+AGG - chr5_4:64795641-64795660 None:intergenic 35.0%
! ATGATGATGAACAGTATGTG+TGG + chr5_4:64795948-64795967 Msa0864420:CDS 35.0%
! TGATGATGAACAGTATGTGT+GGG + chr5_4:64795949-64795968 Msa0864420:CDS 35.0%
TTCTCAACCCAAAGAGAAAT+TGG - chr5_4:64796139-64796158 None:intergenic 35.0%
! GAAAGAGATTTCTGATGATG+AGG + chr5_4:64796168-64796187 Msa0864420:CDS 35.0%
AGTAGATGAGGAGAAAGAAA+AGG + chr5_4:64796231-64796250 Msa0864420:CDS 35.0%
!! TTAAGGAGGTGTCTAATGAA+TGG + chr5_4:64796275-64796294 Msa0864420:CDS 35.0%
TAAACAAGCAGAAGCCTATT+TGG + chr5_4:64796305-64796324 Msa0864420:CDS 35.0%
ACATACAGCTTGATGTTGTT+GGG - chr5_4:64796511-64796530 None:intergenic 35.0%
AGTTGTCCATGATGAAAACA+CGG - chr5_4:64796537-64796556 None:intergenic 35.0%
TTCACAAAGCTAAGATACTC+GGG - chr5_4:64796574-64796593 None:intergenic 35.0%
CTTCACAAAGCTAAGATACT+CGG - chr5_4:64796575-64796594 None:intergenic 35.0%
!! GAGTATCTTAGCTTTGTGAA+GGG + chr5_4:64796574-64796593 Msa0864420:CDS 35.0%
ACAAGATTCTTAAGGTCATC+AGG + chr5_4:64796653-64796672 Msa0864420:CDS 35.0%
CAATTTCAAAGAAAAGCTCG+AGG - chr5_4:64796699-64796718 None:intergenic 35.0%
!! CTTTGAAATTGCTGAGAACA+AGG + chr5_4:64796708-64796727 Msa0864420:CDS 35.0%
! TTCTCTAAGAACTTGAAGCT+GGG + chr5_4:64796757-64796776 Msa0864420:CDS 35.0%
!!! TCTTGTTTTGAGAATCCTCA+TGG - chr5_4:64796786-64796805 None:intergenic 35.0%
GGGATATGAAGTGATTTACA+TGG + chr5_4:64796978-64796997 Msa0864420:CDS 35.0%
ACCAACAGCATATTCATCAA+TGG - chr5_4:64797010-64797029 None:intergenic 35.0%
TAGTGTCTGCAACTAAAGAA+GGG + chr5_4:64797058-64797077 Msa0864420:CDS 35.0%
GAAAAAGATGGAAGAACAGA+AGG + chr5_4:64797110-64797129 Msa0864420:CDS 35.0%
CTCTGCGAAAAAAACCAGAT+CGG + chr5_4:64794585-64794604 Msa0864420:five_prime_UTR 40.0%
GAAAAAAACCAGATCGGCAA+TGG + chr5_4:64794591-64794610 Msa0864420:exon 40.0%
GAAGAGGAAGAAGCTTACAT+CGG - chr5_4:64794731-64794750 None:intergenic 40.0%
! AGAATCAAGCTTGCTCTTGT+CGG - chr5_4:64795572-64795591 None:intergenic 40.0%
TCATGCTAACTTACCAGCTT+TGG - chr5_4:64795674-64795693 None:intergenic 40.0%
TATGGCTTCCATGAATTCCT+TGG - chr5_4:64795831-64795850 None:intergenic 40.0%
GTGAGTATGATTGGACAGTT+TGG + chr5_4:64795866-64795885 Msa0864420:CDS 40.0%
!! ATGATTGGACAGTTTGGTGT+TGG + chr5_4:64795872-64795891 Msa0864420:CDS 40.0%
GGTGGTAACAATAACCTTCT+CGG - chr5_4:64795921-64795940 None:intergenic 40.0%
TTCATCATCATTGTGCTTGG+TGG - chr5_4:64795939-64795958 None:intergenic 40.0%
CTGTTCATCATCATTGTGCT+TGG - chr5_4:64795942-64795961 None:intergenic 40.0%
AATAACTCTCATCCTCAAGG+AGG + chr5_4:64796042-64796061 Msa0864420:CDS 40.0%
GGATCAACTTGAGTATCTTG+AGG + chr5_4:64796063-64796082 Msa0864420:CDS 40.0%
TCTTAACCAAGTCCTTCAGA+CGG - chr5_4:64796093-64796112 None:intergenic 40.0%
TAAGGTTGAGGAAGTAGATG+AGG + chr5_4:64796219-64796238 Msa0864420:CDS 40.0%
GGTGTCTAATGAATGGTCTT+TGG + chr5_4:64796282-64796301 Msa0864420:CDS 40.0%
ACAAGAGTCTCACCAATGAT+TGG + chr5_4:64796374-64796393 Msa0864420:CDS 40.0%
CAAGAGTCTCACCAATGATT+GGG + chr5_4:64796375-64796394 Msa0864420:CDS 40.0%
CAAATGCTCTTCCCAATCAT+TGG - chr5_4:64796389-64796408 None:intergenic 40.0%
!! CAATGATTGGGAAGAGCATT+TGG + chr5_4:64796387-64796406 Msa0864420:CDS 40.0%
TGTTAAGCACTTCTCTGTTG+AGG + chr5_4:64796411-64796430 Msa0864420:CDS 40.0%
GTTAAGCACTTCTCTGTTGA+GGG + chr5_4:64796412-64796431 Msa0864420:CDS 40.0%
!! AGATCAAAAGGTGCTCTCTT+CGG - chr5_4:64796469-64796488 None:intergenic 40.0%
GACATACAGCTTGATGTTGT+TGG - chr5_4:64796512-64796531 None:intergenic 40.0%
TTTCATCATGGACAACTGTG+AGG + chr5_4:64796540-64796559 Msa0864420:CDS 40.0%
!! CGAGTATCTTAGCTTTGTGA+AGG + chr5_4:64796573-64796592 Msa0864420:CDS 40.0%
!! TAGCTTTGTGAAGGGTATTG+TGG + chr5_4:64796582-64796601 Msa0864420:CDS 40.0%
TAAGGTCATCAGGAAGAACT+TGG + chr5_4:64796663-64796682 Msa0864420:CDS 40.0%
! CAGCTTCAAGTTCTTAGAGA+AGG - chr5_4:64796758-64796777 None:intergenic 40.0%
! CTTCTCTAAGAACTTGAAGC+TGG + chr5_4:64796756-64796775 Msa0864420:CDS 40.0%
TATGTTACCAGGATGAAGGA+AGG + chr5_4:64796874-64796893 Msa0864420:CDS 40.0%
AACAGCTTTCTTGCTTTCAC+CGG - chr5_4:64796923-64796942 None:intergenic 40.0%
TTCCTAAGCTTCTCAAGGAA+GGG - chr5_4:64796955-64796974 None:intergenic 40.0%
CTTGAGAAGCTTAGGAAGAA+GGG + chr5_4:64796958-64796977 Msa0864420:CDS 40.0%
GCCATTGATGAATATGCTGT+TGG + chr5_4:64797006-64797025 Msa0864420:CDS 40.0%
CTAGTGTCTGCAACTAAAGA+AGG + chr5_4:64797057-64797076 Msa0864420:CDS 40.0%
GAAGTTCGACAATCTTTGCA+AGG + chr5_4:64797134-64797153 Msa0864420:CDS 40.0%
CAATCTTTGCAAGGTGATCA+AGG + chr5_4:64797143-64797162 Msa0864420:CDS 40.0%
TGTTTAGTGACTGGTGAGTA+TGG + chr5_4:64797228-64797247 Msa0864420:CDS 40.0%
CATGTCAAGCAAGAAGACAA+TGG + chr5_4:64797317-64797336 Msa0864420:CDS 40.0%
CAGGAATGACAAATCTGTCA+AGG + chr5_4:64797395-64797414 Msa0864420:CDS 40.0%
TCTCAAACAGCAAGAGAACA+AGG - chr5_4:64797422-64797441 None:intergenic 40.0%
!! ATCCTGTTGCCAAAAGTGTT+GGG - chr5_4:64797480-64797499 None:intergenic 40.0%
! AATCCTGTTGCCAAAAGTGT+TGG - chr5_4:64797481-64797500 None:intergenic 40.0%
! CTATTGTTTAGGAAGGTGTG+AGG + chr5_4:64797638-64797657 Msa0864420:three_prime_UTR 40.0%
TGAGCAAACAATAGCTACAC+TGG - chr5_4:64797749-64797768 None:intergenic 40.0%
TGTTTGCTCATCGTAAGTTC+TGG + chr5_4:64797759-64797778 Msa0864420:three_prime_UTR 40.0%
AAAAACCAGATCGGCAATGG+CGG + chr5_4:64794594-64794613 Msa0864420:exon 45.0%
ACAAGAGACGTTTGCTTTCC+AGG + chr5_4:64794618-64794637 Msa0864420:CDS 45.0%
! GAAGTTGATTGATCTCAGCC+TGG - chr5_4:64794639-64794658 None:intergenic 45.0%
GGATGCTGTAATGTAGGCTT+TGG + chr5_4:64795522-64795541 Msa0864420:intron 45.0%
!! AAGGTGTTGTTGGTCTTGTC+AGG - chr5_4:64795622-64795641 None:intergenic 45.0%
GGAATTGGAATGACCAAAGC+TGG + chr5_4:64795658-64795677 Msa0864420:CDS 45.0%
CCTAGGTTGTTCACCAAATC+TGG - chr5_4:64795788-64795807 None:intergenic 45.0%
!! CCAGATTTGGTGAACAACCT+AGG + chr5_4:64795785-64795804 Msa0864420:intron 45.0%
ACAACCTAGGTACCATTGCT+AGG + chr5_4:64795798-64795817 Msa0864420:CDS 45.0%
GTCTGGTACCAAGGAATTCA+TGG + chr5_4:64795820-64795839 Msa0864420:CDS 45.0%
!! GGTGCTGATGTGAGTATGAT+TGG + chr5_4:64795857-64795876 Msa0864420:CDS 45.0%
CAATAACCTTCTCGGCAACA+AGG - chr5_4:64795913-64795932 None:intergenic 45.0%
GATACAACTGGTGAAGCTCT+TGG + chr5_4:64796007-64796026 Msa0864420:CDS 45.0%
!! ACTCAAGTTGATCCTCCTTG+AGG - chr5_4:64796057-64796076 None:intergenic 45.0%
! GATTTCTGATGATGAGGACG+AGG + chr5_4:64796174-64796193 Msa0864420:CDS 45.0%
GAAGAGAAGAAGGAAGAGGA+GGG + chr5_4:64796196-64796215 Msa0864420:CDS 45.0%
AGCAGAAGCCTATTTGGATG+AGG + chr5_4:64796311-64796330 Msa0864420:CDS 45.0%
TCAGGCTTCCTCATCCAAAT+AGG - chr5_4:64796322-64796341 None:intergenic 45.0%
TATTTGGATGAGGAAGCCTG+AGG + chr5_4:64796321-64796340 Msa0864420:CDS 45.0%
TGAGGGACAGTTGGAGTTTA+AGG + chr5_4:64796429-64796448 Msa0864420:CDS 45.0%
TGTCCATGATGAAAACACGG+CGG - chr5_4:64796534-64796553 None:intergenic 45.0%
!! CAAAGCTTGCTGATTTGCTC+AGG + chr5_4:64796806-64796825 Msa0864420:CDS 45.0%
TCCTGGTAACATAGTCCTTG+AGG - chr5_4:64796867-64796886 None:intergenic 45.0%
GGACTATGTTACCAGGATGA+AGG + chr5_4:64796870-64796889 Msa0864420:CDS 45.0%
TCCTAAGCTTCTCAAGGAAG+GGG - chr5_4:64796954-64796973 None:intergenic 45.0%
CTTCCTAAGCTTCTCAAGGA+AGG - chr5_4:64796956-64796975 None:intergenic 45.0%
CCTTCTTCCTAAGCTTCTCA+AGG - chr5_4:64796960-64796979 None:intergenic 45.0%
CCTTGAGAAGCTTAGGAAGA+AGG + chr5_4:64796957-64796976 Msa0864420:CDS 45.0%
ATATGCTGTTGGTCAGCTCA+AGG + chr5_4:64797017-64797036 Msa0864420:CDS 45.0%
TGGTCAGCTCAAGGAATTTG+AGG + chr5_4:64797026-64797045 Msa0864420:CDS 45.0%
GGTCAGCTCAAGGAATTTGA+GGG + chr5_4:64797027-64797046 Msa0864420:CDS 45.0%
GTTGAAACTTGACGAGAGTG+AGG + chr5_4:64797080-64797099 Msa0864420:CDS 45.0%
TCTTTGCAAGGTGATCAAGG+AGG + chr5_4:64797146-64797165 Msa0864420:CDS 45.0%
!! AAGGTGATCAAGGAGGTGTT+GGG + chr5_4:64797153-64797172 Msa0864420:CDS 45.0%
AGCAAGGAGAATCGACAACA+CGG - chr5_4:64797209-64797228 None:intergenic 45.0%
!! TCTCCTTGCTGTTTAGTGAC+TGG + chr5_4:64797219-64797238 Msa0864420:CDS 45.0%
TCACCAGTCACTAAACAGCA+AGG - chr5_4:64797225-64797244 None:intergenic 45.0%
TAGTGACTGGTGAGTATGGT+TGG + chr5_4:64797232-64797251 Msa0864420:CDS 45.0%
CTTCATGATCCTCTCCATGT+TGG - chr5_4:64797262-64797281 None:intergenic 45.0%
CAACATGGAGAGGATCATGA+AGG + chr5_4:64797260-64797279 Msa0864420:CDS 45.0%
TTCCTCAGCTCCTCCATTAT+GGG - chr5_4:64797360-64797379 None:intergenic 45.0%
TTTCCTCAGCTCCTCCATTA+TGG - chr5_4:64797361-64797380 None:intergenic 45.0%
GAGACTGCTCTTCTTACTTC+TGG + chr5_4:64797438-64797457 Msa0864420:CDS 45.0%
!! CAAAAGTGTTGGGCTCATCA+AGG - chr5_4:64797470-64797489 None:intergenic 45.0%
! CTTGATGAGCCCAACACTTT+TGG + chr5_4:64797468-64797487 Msa0864420:CDS 45.0%
! CTTTTGGCAACAGGATTCAC+AGG + chr5_4:64797484-64797503 Msa0864420:CDS 45.0%
ATTCACAGGATGCTCAAGCT+TGG + chr5_4:64797498-64797517 Msa0864420:CDS 45.0%
!! GCTTGGTCTTAGCATTGATG+AGG + chr5_4:64797515-64797534 Msa0864420:CDS 45.0%
TGTCGGTCAAGCCCTCAAAA+CGG - chr5_4:64795555-64795574 None:intergenic 50.0%
CAGACCTAGCAATGGTACCT+AGG - chr5_4:64795805-64795824 None:intergenic 50.0%
CTAGGTACCATTGCTAGGTC+TGG + chr5_4:64795803-64795822 Msa0864420:CDS 50.0%
CTTGGTACCAGACCTAGCAA+TGG - chr5_4:64795813-64795832 None:intergenic 50.0%
CATTGCTAGGTCTGGTACCA+AGG + chr5_4:64795811-64795830 Msa0864420:CDS 50.0%
TTCATGGAAGCCATAGCTGC+TGG + chr5_4:64795836-64795855 Msa0864420:CDS 50.0%
TGCTTACCTTGTTGCCGAGA+AGG + chr5_4:64795904-64795923 Msa0864420:CDS 50.0%
AGTGAATGACCCACCAGCTT+GGG - chr5_4:64795978-64795997 None:intergenic 50.0%
TGGGTCATTCACTGTGACCA+GGG + chr5_4:64795985-64796004 Msa0864420:CDS 50.0%
ACTGTGACCAGGGATACAAC+TGG + chr5_4:64795995-64796014 Msa0864420:CDS 50.0%
AGCTTCACCAGTTGTATCCC+TGG - chr5_4:64796005-64796024 None:intergenic 50.0%
AACTGGTGAAGCTCTTGGCA+GGG + chr5_4:64796012-64796031 Msa0864420:CDS 50.0%
TGAGGACGAGGAAGAGAAGA+AGG + chr5_4:64796186-64796205 Msa0864420:CDS 50.0%
CGAGGAAGAGAAGAAGGAAG+AGG + chr5_4:64796192-64796211 Msa0864420:CDS 50.0%
GGAAGAGAAGAAGGAAGAGG+AGG + chr5_4:64796195-64796214 Msa0864420:CDS 50.0%
GAAGAAGGAAGAGGAGGGTA+AGG + chr5_4:64796201-64796220 Msa0864420:CDS 50.0%
GAAGCCTGAGGAGATCACAA+AGG + chr5_4:64796333-64796352 Msa0864420:CDS 50.0%
TCGTCCTTTGTGATCTCCTC+AGG - chr5_4:64796340-64796359 None:intergenic 50.0%
CTTCTCTGTTGAGGGACAGT+TGG + chr5_4:64796420-64796439 Msa0864420:CDS 50.0%
! TGTCCGCCGTGTTTTCATCA+TGG + chr5_4:64796528-64796547 Msa0864420:CDS 50.0%
!! GAAGGGTATTGTGGACTCTG+AGG + chr5_4:64796591-64796610 Msa0864420:CDS 50.0%
CTTGAAGCTGGGTATCCATG+AGG + chr5_4:64796768-64796787 Msa0864420:CDS 50.0%
CATGTCATCACCACTCTTGG+TGG - chr5_4:64796839-64796858 None:intergenic 50.0%
GGTCATGTCATCACCACTCT+TGG - chr5_4:64796842-64796861 None:intergenic 50.0%
TGATGACATGACCAGCCTCA+AGG + chr5_4:64796849-64796868 Msa0864420:CDS 50.0%
GGTAACATAGTCCTTGAGGC+TGG - chr5_4:64796863-64796882 None:intergenic 50.0%
GCCTCAAGGACTATGTTACC+AGG + chr5_4:64796863-64796882 Msa0864420:CDS 50.0%
GTTCTGTCCTTCCTTCATCC+TGG - chr5_4:64796884-64796903 None:intergenic 50.0%
CCTAAGCTTCTCAAGGAAGG+GGG - chr5_4:64796953-64796972 None:intergenic 50.0%
! CAAGGTGATCAAGGAGGTGT+TGG + chr5_4:64797152-64797171 Msa0864420:CDS 50.0%
GGGTGACAAGGTTGAGAAAG+TGG + chr5_4:64797173-64797192 Msa0864420:CDS 50.0%
GTATGGTTGGACTGCCAACA+TGG + chr5_4:64797245-64797264 Msa0864420:CDS 50.0%
! TCATGAAGGCACAGGCTTTG+AGG + chr5_4:64797274-64797293 Msa0864420:CDS 50.0%
! CATGAAGGCACAGGCTTTGA+GGG + chr5_4:64797275-64797294 Msa0864420:CDS 50.0%
TCCTCCATTATGGGGTTCTC+GGG - chr5_4:64797351-64797370 None:intergenic 50.0%
CTCCTCCATTATGGGGTTCT+CGG - chr5_4:64797352-64797371 None:intergenic 50.0%
TCCTCAGCTCCTCCATTATG+GGG - chr5_4:64797359-64797378 None:intergenic 50.0%
! AGCCCAACACTTTTGGCAAC+AGG + chr5_4:64797475-64797494 Msa0864420:CDS 50.0%
TGATGCTGACATGCCACCAT+TGG + chr5_4:64797551-64797570 Msa0864420:CDS 50.0%
TCAGCATCAGCTTCCTCCAA+TGG - chr5_4:64797570-64797589 None:intergenic 50.0%
GAAGCTGATGCTGATGCAGA+GGG + chr5_4:64797576-64797595 Msa0864420:CDS 50.0%
TGATGCAGAGGGAAGCAAGA+TGG + chr5_4:64797587-64797606 Msa0864420:CDS 50.0%
AGAGGGAAGCAAGATGGAAG+AGG + chr5_4:64797593-64797612 Msa0864420:CDS 50.0%
TTGTTCCGCCATTGCCGATC+TGG - chr5_4:64794602-64794621 None:intergenic 55.0%
CACATCAGCACCAGCAGCTA+TGG - chr5_4:64795849-64795868 None:intergenic 55.0%
TATGTGTGGGAGTCCCAAGC+TGG + chr5_4:64795962-64795981 Msa0864420:CDS 55.0%
CAGTGAATGACCCACCAGCT+TGG - chr5_4:64795979-64795998 None:intergenic 55.0%
GTGGGTCATTCACTGTGACC+AGG + chr5_4:64795984-64796003 Msa0864420:CDS 55.0%
CAACTGGTGAAGCTCTTGGC+AGG + chr5_4:64796011-64796030 Msa0864420:CDS 55.0%
ACTGGTGAAGCTCTTGGCAG+GGG + chr5_4:64796013-64796032 Msa0864420:CDS 55.0%
TCTTGAGGAACGCCGTCTGA+AGG + chr5_4:64796078-64796097 Msa0864420:CDS 55.0%
GGAAGAGGAGGGTAAGGTTG+AGG + chr5_4:64796207-64796226 Msa0864420:CDS 55.0%
AGGTACCACTCCACCAAGAG+TGG + chr5_4:64796826-64796845 Msa0864420:CDS 55.0%
CATCACCACTCTTGGTGGAG+TGG - chr5_4:64796834-64796853 None:intergenic 55.0%
CCCCCTTCCTTGAGAAGCTT+AGG + chr5_4:64796950-64796969 Msa0864420:CDS 55.0%
!! CAAGGAGGTGTTGGGTGACA+AGG + chr5_4:64797161-64797180 Msa0864420:CDS 55.0%
GTTGGACTGCCAACATGGAG+AGG + chr5_4:64797250-64797269 Msa0864420:CDS 55.0%
! GGAGAGGATCATGAAGGCAC+AGG + chr5_4:64797266-64797285 Msa0864420:CDS 55.0%
!! GGCTTTGAGGGATAGCAGCA+TGG + chr5_4:64797287-64797306 Msa0864420:CDS 55.0%
TTGAGGGATAGCAGCATGGC+TGG + chr5_4:64797291-64797310 Msa0864420:CDS 55.0%
CAACCCCGAGAACCCCATAA+TGG + chr5_4:64797344-64797363 Msa0864420:CDS 55.0%
CCTCCATTATGGGGTTCTCG+GGG - chr5_4:64797350-64797369 None:intergenic 55.0%
! ACCCCATAATGGAGGAGCTG+AGG + chr5_4:64797355-64797374 Msa0864420:CDS 55.0%
! GCTGAGGAAACGTGCTGATG+CGG + chr5_4:64797371-64797390 Msa0864420:CDS 55.0%
TGCTGACATGCCACCATTGG+AGG + chr5_4:64797554-64797573 Msa0864420:CDS 55.0%
GCATCAGCTTCCTCCAATGG+TGG - chr5_4:64797567-64797586 None:intergenic 55.0%
GGAAGCTGATGCTGATGCAG+AGG + chr5_4:64797575-64797594 Msa0864420:CDS 55.0%
! GGTGCTACGAGCAAAGAACG+CGG - chr5_4:64797839-64797858 None:intergenic 55.0%
TGTGGGAGTCCCAAGCTGGT+GGG + chr5_4:64795966-64795985 Msa0864420:CDS 60.0%
GGAACGCCGTCTGAAGGACT+TGG + chr5_4:64796084-64796103 Msa0864420:CDS 60.0%
CCCCGAGAACCCCATAATGG+AGG + chr5_4:64797347-64797366 Msa0864420:CDS 60.0%
! GGAAACGTGCTGATGCGGAC+AGG + chr5_4:64797376-64797395 Msa0864420:CDS 60.0%
GTGTGGGAGTCCCAAGCTGG+TGG + chr5_4:64795965-64795984 Msa0864420:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 64794524 64797928 64794524 ID=Msa0864420;Name=Msa0864420
chr5_4 mRNA 64794524 64797928 64794524 ID=Msa0864420-mRNA-1;Parent=Msa0864420;Name=Msa0864420-mRNA-1;_AED=0.00;_eAED=0.00;_QI=86|1|1|1|1|1|3|305|699
chr5_4 exon 64794524 64794732 64794524 ID=Msa0864420-mRNA-1:exon:20383;Parent=Msa0864420-mRNA-1
chr5_4 exon 64795538 64795679 64795538 ID=Msa0864420-mRNA-1:exon:20384;Parent=Msa0864420-mRNA-1
chr5_4 exon 64795789 64797928 64795789 ID=Msa0864420-mRNA-1:exon:20385;Parent=Msa0864420-mRNA-1
chr5_4 five_prime_UTR 64794524 64794609 64794524 ID=Msa0864420-mRNA-1:five_prime_utr;Parent=Msa0864420-mRNA-1
chr5_4 CDS 64794610 64794732 64794610 ID=Msa0864420-mRNA-1:cds;Parent=Msa0864420-mRNA-1
chr5_4 CDS 64795538 64795679 64795538 ID=Msa0864420-mRNA-1:cds;Parent=Msa0864420-mRNA-1
chr5_4 CDS 64795789 64797623 64795789 ID=Msa0864420-mRNA-1:cds;Parent=Msa0864420-mRNA-1
chr5_4 three_prime_UTR 64797624 64797928 64797624 ID=Msa0864420-mRNA-1:three_prime_utr;Parent=Msa0864420-mRNA-1
Gene Sequence

>Msa0864420

ATGGCGGAACAAGAGACGTTTGCTTTCCAGGCTGAGATCAATCAACTTCTCAGTCTCATCATCAACACCTTTTACAGTAACAAGGAGATTTTTCTTCGTGAACTCATCAGTAACGCTTCCGATGCTTTGGATAAGATCCGTTTTGAGGGCTTGACCGACAAGAGCAAGCTTGATTCTCAGCCAGAGTTGTTCATTCACATTATTCCTGACAAGACCAACAACACCTTGACTATCATTGATAGTGGAATTGGAATGACCAAAGCTGATTTGGTGAACAACCTAGGTACCATTGCTAGGTCTGGTACCAAGGAATTCATGGAAGCCATAGCTGCTGGTGCTGATGTGAGTATGATTGGACAGTTTGGTGTTGGTTTCTACTCTGCTTACCTTGTTGCCGAGAAGGTTATTGTTACCACCAAGCACAATGATGATGAACAGTATGTGTGGGAGTCCCAAGCTGGTGGGTCATTCACTGTGACCAGGGATACAACTGGTGAAGCTCTTGGCAGGGGAACTAAAATAACTCTCATCCTCAAGGAGGATCAACTTGAGTATCTTGAGGAACGCCGTCTGAAGGACTTGGTTAAGAAGCATTCTGAATTTATTAGCTATCCAATTTCTCTTTGGGTTGAGAAGACTATTGAGAAAGAGATTTCTGATGATGAGGACGAGGAAGAGAAGAAGGAAGAGGAGGGTAAGGTTGAGGAAGTAGATGAGGAGAAAGAAAAGGAAGAGAAGAAAAAGAAGAAGATTAAGGAGGTGTCTAATGAATGGTCTTTGGTAAACAAGCAGAAGCCTATTTGGATGAGGAAGCCTGAGGAGATCACAAAGGACGAGTATGCTGCTTTTTACAAGAGTCTCACCAATGATTGGGAAGAGCATTTGGCTGTTAAGCACTTCTCTGTTGAGGGACAGTTGGAGTTTAAGGCTGTTCTCTTTGTACCGAAGAGAGCACCTTTTGATCTCTTTGACACAAAGAAGAAGCCCAACAACATCAAGCTGTATGTCCGCCGTGTTTTCATCATGGACAACTGTGAGGAGCTGATGCCCGAGTATCTTAGCTTTGTGAAGGGTATTGTGGACTCTGAGGATCTTCCACTTAACATTTCAAGAGAAATGCTTCAACAGAACAAGATTCTTAAGGTCATCAGGAAGAACTTGGTGAAGAAGTGCCTCGAGCTTTTCTTTGAAATTGCTGAGAACAAGGAAGATTACAACAAGTTCTATGAGGCCTTCTCTAAGAACTTGAAGCTGGGTATCCATGAGGATTCTCAAAACAAGACAAAGCTTGCTGATTTGCTCAGGTACCACTCCACCAAGAGTGGTGATGACATGACCAGCCTCAAGGACTATGTTACCAGGATGAAGGAAGGACAGAACGACATTTACTACATTACCGGTGAAAGCAAGAAAGCTGTTGAGAATTCCCCCTTCCTTGAGAAGCTTAGGAAGAAGGGATATGAAGTGATTTACATGGTTGACGCCATTGATGAATATGCTGTTGGTCAGCTCAAGGAATTTGAGGGTAAGAAGCTAGTGTCTGCAACTAAAGAAGGGTTGAAACTTGACGAGAGTGAGGATGAAAAGAAAAAGATGGAAGAACAGAAGGAGAAGTTCGACAATCTTTGCAAGGTGATCAAGGAGGTGTTGGGTGACAAGGTTGAGAAAGTGGTTGTATCTGACCGTGTTGTCGATTCTCCTTGCTGTTTAGTGACTGGTGAGTATGGTTGGACTGCCAACATGGAGAGGATCATGAAGGCACAGGCTTTGAGGGATAGCAGCATGGCTGGTTACATGTCAAGCAAGAAGACAATGGAAATCAACCCCGAGAACCCCATAATGGAGGAGCTGAGGAAACGTGCTGATGCGGACAGGAATGACAAATCTGTCAAGGACCTTGTTCTCTTGCTGTTTGAGACTGCTCTTCTTACTTCTGGATTCAGCCTTGATGAGCCCAACACTTTTGGCAACAGGATTCACAGGATGCTCAAGCTTGGTCTTAGCATTGATGAGGATGCAGCAGAAGCTGATGCTGACATGCCACCATTGGAGGAAGCTGATGCTGATGCAGAGGGAAGCAAGATGGAAGAGGTCGATTAA

Protein sequence

>Msa0864420

MAEQETFAFQAEINQLLSLIINTFYSNKEIFLRELISNASDALDKIRFEGLTDKSKLDSQPELFIHIIPDKTNNTLTIIDSGIGMTKADLVNNLGTIARSGTKEFMEAIAAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDTTGEALGRGTKITLILKEDQLEYLEERRLKDLVKKHSEFISYPISLWVEKTIEKEISDDEDEEEKKEEEGKVEEVDEEKEKEEKKKKKIKEVSNEWSLVNKQKPIWMRKPEEITKDEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTKKKPNNIKLYVRRVFIMDNCEELMPEYLSFVKGIVDSEDLPLNISREMLQQNKILKVIRKNLVKKCLELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSQNKTKLADLLRYHSTKSGDDMTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLRKKGYEVIYMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLDESEDEKKKMEEQKEKFDNLCKVIKEVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMAGYMSSKKTMEINPENPIMEELRKRADADRNDKSVKDLVLLLFETALLTSGFSLDEPNTFGNRIHRMLKLGLSIDEDAAEADADMPPLEEADADAEGSKMEEVD*