AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1033720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1033720 MtrunA17_Chr7g0256611 100.000 182 0 0 1 182 90 271 2.34e-122 346
Msa1033720 MtrunA17_Chr4g0036041 35.669 157 95 3 20 176 8 158 4.99e-23 90.1
Msa1033720 MtrunA17_Chr8g0372131 35.669 157 95 3 20 176 8 158 4.99e-23 90.1
Msa1033720 MtrunA17_Chr5g0405201 35.032 157 96 3 20 176 8 158 1.44e-22 89.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1033720 AT2G25610.1 92.000 175 14 0 7 181 4 178 4.80e-111 314
Msa1033720 AT2G25610.2 92.000 175 14 0 7 181 53 227 7.55e-111 315
Msa1033720 AT4G32530.1 93.023 172 12 0 10 181 9 180 1.32e-110 313
Msa1033720 AT4G32530.2 79.208 202 12 1 10 181 9 210 2.27e-103 296
Msa1033720 AT1G19910.1 35.669 157 95 3 20 176 9 159 6.34e-23 90.1
Msa1033720 AT1G75630.1 35.669 157 95 3 20 176 10 160 6.64e-23 90.1
Msa1033720 AT4G34720.1 35.669 157 95 3 20 176 8 158 6.89e-23 90.1
Msa1033720 AT4G38920.1 35.669 157 95 3 20 176 8 158 6.89e-23 90.1
Msa1033720 AT2G16510.1 35.669 157 95 3 20 176 8 158 6.89e-23 90.1
Msa1033720 AT4G38920.2 37.226 137 81 2 40 176 1 132 6.03e-22 86.7
Msa1033720 AT4G34720.2 37.226 137 81 2 40 176 5 136 8.37e-22 86.7
Msa1033720 AT1G75630.2 29.843 191 94 5 20 176 10 194 5.54e-16 72.8
Msa1033720 AT1G19910.2 31.624 117 74 3 20 136 9 119 8.42e-11 57.4

Find 56 sgRNAs with CRISPR-Local

Find 476 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTCATAGATACTTGATTT+TGG 0.177979 7_1:-68968824 None:intergenic
ATGTTCAAATTAATCATAAA+TGG 0.215363 7_1:-68969588 None:intergenic
GGTAGTGCGCTTGGCCTATT+TGG 0.238231 7_1:+68969122 Msa1033720:CDS
TCTCTGCTGCTTATCCCTTT+TGG 0.270357 7_1:+68969280 Msa1033720:three_prime_UTR
TATCCAGCTCTAAGAGATTC+TGG 0.324274 7_1:-68968845 None:intergenic
GGATATGCAATCTTTGCTTC+TGG 0.326193 7_1:+68968863 Msa1033720:CDS
TCTACCAGAGTTGTTATAGA+AGG 0.330132 7_1:+68969361 Msa1033720:three_prime_UTR
TGTGAAGCTGTTGCTATATA+TGG 0.352411 7_1:+68968758 Msa1033720:CDS
ATTCTTGTGATTGAGATCTT+TGG 0.353130 7_1:+68969101 Msa1033720:CDS
GGCCTATTTGGAGTTATTGT+TGG 0.370654 7_1:+68969134 Msa1033720:CDS
TTGCAGCGCATTCAAGCTCT+TGG 0.376310 7_1:+68965662 Msa1033720:CDS
TTTGCTTCTGGACTTATTGT+GGG 0.379757 7_1:+68968875 Msa1033720:CDS
AGGTTGTGTGTAGGCATAAT+TGG 0.380831 7_1:+68969029 Msa1033720:intron
TTCCAACAATAACTCCAAAT+AGG 0.387180 7_1:-68969136 None:intergenic
CTTTGCTTCTGGACTTATTG+TGG 0.393040 7_1:+68968874 Msa1033720:CDS
GGCGATACCGATTGCGGAAA+AGG 0.405375 7_1:-68965716 None:intergenic
CTTGGGCTGCAGCACTCGTC+AGG 0.412435 7_1:+68965680 Msa1033720:CDS
AGAGGATTGGGATCGGATCT+TGG 0.414602 7_1:-68965599 None:intergenic
AAATGTGAATTTATTGGTCT+CGG 0.414802 7_1:+68969476 Msa1033720:three_prime_UTR
GCTTCGCAAATCTTGTTTGT+GGG 0.438334 7_1:+68968897 Msa1033720:CDS
TGTTACGTGAGGAGAGGATT+GGG 0.458835 7_1:-68965611 None:intergenic
TGCAGCGCATTCAAGCTCTT+GGG 0.466822 7_1:+68965663 Msa1033720:CDS
TCTATCGGTGTCTCCGTTCT+CGG 0.467994 7_1:+68965742 Msa1033720:CDS
GAGATCTTTGGTAGTGCGCT+TGG 0.473123 7_1:+68969113 Msa1033720:CDS
TTGTGTAGTGAGATAGAAAG+AGG 0.479871 7_1:-68965571 None:intergenic
TTTGATCGGTGCTGCTATCA+AGG 0.480937 7_1:+68965885 Msa1033720:CDS
ATCGGTATCGCCGTCTCTAT+CGG 0.483284 7_1:+68965727 Msa1033720:CDS
CCGATTGCGGAAAAGGTGTA+TGG 0.489744 7_1:-68965709 None:intergenic
GGCTTCGCAAATCTTGTTTG+TGG 0.492697 7_1:+68968896 Msa1033720:CDS
AATACAGCCTACAGTTGTAA+TGG 0.499886 7_1:-68969337 None:intergenic
TTGTTACGTGAGGAGAGGAT+TGG 0.505254 7_1:-68965612 None:intergenic
GAACCAGAATCTCTTAGAGC+TGG 0.512261 7_1:+68968842 Msa1033720:CDS
GCCTTGTATCATCAGTGTGC+GGG 0.527553 7_1:+68969203 Msa1033720:three_prime_UTR
TGTTGTTGCAGGTTGTGTGT+AGG 0.535435 7_1:+68969020 Msa1033720:intron
CTACCAGAGTTGTTATAGAA+GGG 0.538207 7_1:+68969362 Msa1033720:three_prime_UTR
TGAAGGGGAATTTACATCAC+CGG 0.569427 7_1:+68965856 Msa1033720:intron
ATCACCGGTAGTAGTTTGAT+CGG 0.575017 7_1:+68965871 Msa1033720:CDS
CTTGTGTCCATTACAACTGT+AGG 0.583896 7_1:+68969330 Msa1033720:three_prime_UTR
AGTGTGCGGGAATTCAATTA+CGG 0.589846 7_1:+68969216 Msa1033720:three_prime_UTR
TGCCTTGTATCATCAGTGTG+CGG 0.590305 7_1:+68969202 Msa1033720:three_prime_UTR
CGTGAGGAGAGGATTGGGAT+CGG 0.595564 7_1:-68965606 None:intergenic
TCCCGCACACTGATGATACA+AGG 0.596240 7_1:-68969204 None:intergenic
TTACCAAGCAGCGCCGAGAA+CGG 0.608209 7_1:-68965755 None:intergenic
TGGTCTCGGCAATAAAGTCA+AGG 0.609715 7_1:+68969490 Msa1033720:three_prime_UTR
AGCACCGATCAAACTACTAC+CGG 0.613839 7_1:-68965875 None:intergenic
AACGGAGACACCGATAGAGA+CGG 0.614106 7_1:-68965737 None:intergenic
AGGCCCTTCTATAACAACTC+TGG 0.614389 7_1:-68969365 None:intergenic
GTGCTGCTATCAAGGCTCCA+AGG 0.615656 7_1:+68965893 Msa1033720:CDS
GATGGTTGTTACGTGAGGAG+AGG 0.633092 7_1:-68965617 None:intergenic
ATCGTGATGGTTGTTACGTG+AGG 0.637703 7_1:-68965622 None:intergenic
AGAGACGGCGATACCGATTG+CGG 0.644220 7_1:-68965722 None:intergenic
AGGCTTCAGATGTACTGATG+AGG 0.658242 7_1:+68969510 Msa1033720:three_prime_UTR
TTATGTCAGCTCAAGCAACA+TGG 0.667422 7_1:+68969162 Msa1033720:CDS
TGATATATCTGATGACACAC+AGG 0.673327 7_1:-68969385 None:intergenic
ATGGACACAAGCTATCATGT+CGG 0.703308 7_1:-68969318 None:intergenic
TGCAGAGCTAGACATCGTGA+TGG 0.721177 7_1:-68965635 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAAATTCTTTCTTTTTT+TGG - chr7_1:68968165-68968184 None:intergenic 10.0%
!! ATAAAAAAATGTGAATTTAT+TGG + chr7_1:68969470-68969489 Msa1033720:three_prime_UTR 10.0%
!!! AAAAAAATTCTTTCTTTTTT+TGG - chr7_1:68968165-68968184 None:intergenic 10.0%
!! ATAAAAAAATGTGAATTTAT+TGG + chr7_1:68969470-68969489 Msa1033720:three_prime_UTR 10.0%
!! ACTAAAAAACACAAATTTAA+AGG - chr7_1:68965962-68965981 None:intergenic 15.0%
!!! ATGTAAATGTTTTACTTTTT+TGG + chr7_1:68966259-68966278 Msa1033720:intron 15.0%
!! ATGAAAATGATAAAGAAAAA+AGG + chr7_1:68966487-68966506 Msa1033720:intron 15.0%
!! TACAATACATTTCTTAAAAA+AGG - chr7_1:68966930-68966949 None:intergenic 15.0%
!!! TTTTTTAAGAAATGTATTGT+AGG + chr7_1:68966929-68966948 Msa1033720:intron 15.0%
!!! TTTTTAAGAAATGTATTGTA+GGG + chr7_1:68966930-68966949 Msa1033720:intron 15.0%
!! TAAATATCACATAAAATACA+GGG - chr7_1:68968537-68968556 None:intergenic 15.0%
!! ATGTTCAAATTAATCATAAA+TGG - chr7_1:68969591-68969610 None:intergenic 15.0%
!! ACTAAAAAACACAAATTTAA+AGG - chr7_1:68965962-68965981 None:intergenic 15.0%
!!! ATGTAAATGTTTTACTTTTT+TGG + chr7_1:68966259-68966278 Msa1033720:intron 15.0%
!! ATGAAAATGATAAAGAAAAA+AGG + chr7_1:68966487-68966506 Msa1033720:intron 15.0%
!! TACAATACATTTCTTAAAAA+AGG - chr7_1:68966930-68966949 None:intergenic 15.0%
!!! TTTTTTAAGAAATGTATTGT+AGG + chr7_1:68966929-68966948 Msa1033720:intron 15.0%
!!! TTTTTAAGAAATGTATTGTA+GGG + chr7_1:68966930-68966949 Msa1033720:intron 15.0%
!! TAAATATCACATAAAATACA+GGG - chr7_1:68968537-68968556 None:intergenic 15.0%
!! ATGTTCAAATTAATCATAAA+TGG - chr7_1:68969591-68969610 None:intergenic 15.0%
!!! AGAGATAATTTGATTTGAAA+GGG - chr7_1:68965802-68965821 None:intergenic 20.0%
!!! AAGAGATAATTTGATTTGAA+AGG - chr7_1:68965803-68965822 None:intergenic 20.0%
!! TAAACAACAGATTCAAATAA+CGG - chr7_1:68965827-68965846 None:intergenic 20.0%
!! ATGTTTAATGCTTAATATCA+TGG + chr7_1:68966153-68966172 Msa1033720:intron 20.0%
!! AAGTAAAACATTTACATCAA+AGG - chr7_1:68966256-68966275 None:intergenic 20.0%
!! AATCAGGAAAAAATTATTGA+GGG + chr7_1:68966654-68966673 Msa1033720:intron 20.0%
!! AAATAATGAGACATCAAAAT+AGG + chr7_1:68966687-68966706 Msa1033720:intron 20.0%
!! TTATATAAAATACACAGAGA+CGG - chr7_1:68966778-68966797 None:intergenic 20.0%
!!! AAGTAGAAAATGTTTACTTT+TGG + chr7_1:68967105-68967124 Msa1033720:intron 20.0%
!!! AAAATGTTTACTTTTGGATT+TGG + chr7_1:68967111-68967130 Msa1033720:intron 20.0%
!! ACAATAAAATCTTGTATGTA+TGG - chr7_1:68967588-68967607 None:intergenic 20.0%
!!! TGTAAAGAATTACCTAATTT+TGG - chr7_1:68967715-68967734 None:intergenic 20.0%
!!! AAACAAGTGAAATAATTTTG+TGG + chr7_1:68967911-68967930 Msa1033720:intron 20.0%
!!! TGTATTTTAAAAAGCTCTAT+TGG + chr7_1:68968314-68968333 Msa1033720:intron 20.0%
!! CTAAATATCACATAAAATAC+AGG - chr7_1:68968538-68968557 None:intergenic 20.0%
!! AATACAAACTTAAACGTAAA+AGG - chr7_1:68968623-68968642 None:intergenic 20.0%
!!! AGAGATAATTTGATTTGAAA+GGG - chr7_1:68965802-68965821 None:intergenic 20.0%
!!! AAGAGATAATTTGATTTGAA+AGG - chr7_1:68965803-68965822 None:intergenic 20.0%
!! TAAACAACAGATTCAAATAA+CGG - chr7_1:68965827-68965846 None:intergenic 20.0%
!! ATGTTTAATGCTTAATATCA+TGG + chr7_1:68966153-68966172 Msa1033720:intron 20.0%
!! AAGTAAAACATTTACATCAA+AGG - chr7_1:68966256-68966275 None:intergenic 20.0%
!! AATCAGGAAAAAATTATTGA+GGG + chr7_1:68966654-68966673 Msa1033720:intron 20.0%
!! AAATAATGAGACATCAAAAT+AGG + chr7_1:68966687-68966706 Msa1033720:intron 20.0%
!! TTATATAAAATACACAGAGA+CGG - chr7_1:68966778-68966797 None:intergenic 20.0%
!!! AAGTAGAAAATGTTTACTTT+TGG + chr7_1:68967105-68967124 Msa1033720:intron 20.0%
!!! AAAATGTTTACTTTTGGATT+TGG + chr7_1:68967111-68967130 Msa1033720:intron 20.0%
!! ACAATAAAATCTTGTATGTA+TGG - chr7_1:68967588-68967607 None:intergenic 20.0%
!!! TGTAAAGAATTACCTAATTT+TGG - chr7_1:68967715-68967734 None:intergenic 20.0%
!!! AAACAAGTGAAATAATTTTG+TGG + chr7_1:68967911-68967930 Msa1033720:intron 20.0%
!!! TGTATTTTAAAAAGCTCTAT+TGG + chr7_1:68968314-68968333 Msa1033720:intron 20.0%
!! CTAAATATCACATAAAATAC+AGG - chr7_1:68968538-68968557 None:intergenic 20.0%
!! AATACAAACTTAAACGTAAA+AGG - chr7_1:68968623-68968642 None:intergenic 20.0%
! GGGGAAAATTGAAAAAAATA+GGG - chr7_1:68965782-68965801 None:intergenic 25.0%
! AGGGGAAAATTGAAAAAAAT+AGG - chr7_1:68965783-68965802 None:intergenic 25.0%
!!! GAGATAATTTGATTTGAAAG+GGG - chr7_1:68965801-68965820 None:intergenic 25.0%
!! TGAATCTGTTGTTTATGTAA+TGG + chr7_1:68965832-68965851 Msa1033720:intron 25.0%
! TTGTTTATGTAATGGTTGAA+GGG + chr7_1:68965840-68965859 Msa1033720:intron 25.0%
!! TACATACCTAATGAGATTTT+TGG - chr7_1:68965926-68965945 None:intergenic 25.0%
!!! CTAGTTTCTTTTTAGTTGAA+AGG + chr7_1:68966177-68966196 Msa1033720:intron 25.0%
!!! TTTTTAGTTGAAAGGAAATG+AGG + chr7_1:68966185-68966204 Msa1033720:intron 25.0%
! AAATGAGGAAGTTAATTACT+AGG + chr7_1:68966200-68966219 Msa1033720:intron 25.0%
! GCTCATAATAAATGATCATT+TGG + chr7_1:68966418-68966437 Msa1033720:intron 25.0%
!! TTATTTTCCTACAGAACAAT+TGG - chr7_1:68966586-68966605 None:intergenic 25.0%
! GAATCAGGAAAAAATTATTG+AGG + chr7_1:68966653-68966672 Msa1033720:intron 25.0%
! ATCAGGAAAAAATTATTGAG+GGG + chr7_1:68966655-68966674 Msa1033720:intron 25.0%
!! AGTAAACATTTTCTACTTAG+CGG - chr7_1:68967103-68967122 None:intergenic 25.0%
! ATTTAATGAAGTATGTTGCT+TGG - chr7_1:68967175-68967194 None:intergenic 25.0%
!! TCACAATACTGTTTTATAGA+AGG + chr7_1:68967330-68967349 Msa1033720:intron 25.0%
! ATTGCTTCAGAAAAATGTTT+AGG + chr7_1:68967403-68967422 Msa1033720:intron 25.0%
! GTTACTTGTAGTAATTAAGT+CGG + chr7_1:68967642-68967661 Msa1033720:intron 25.0%
! GATACTTGTAGTAATTAAGT+CGG + chr7_1:68967664-68967683 Msa1033720:intron 25.0%
!!! GGATAATATTCACTTTTGAT+TGG + chr7_1:68967685-68967704 Msa1033720:intron 25.0%
!! AACCAAATAGAATTTGTTTC+TGG + chr7_1:68967734-68967753 Msa1033720:intron 25.0%
! TTCCAGAAACAAATTCTATT+TGG - chr7_1:68967739-68967758 None:intergenic 25.0%
! TGAATATTTCCGTAAATTCA+TGG + chr7_1:68968062-68968081 Msa1033720:intron 25.0%
! GAATATTTCCGTAAATTCAT+GGG + chr7_1:68968063-68968082 Msa1033720:intron 25.0%
! CAAAGTGATACTCTAATTAT+TGG + chr7_1:68968103-68968122 Msa1033720:intron 25.0%
!!! ATTCTTTCTTTTTTTGGTCA+AGG - chr7_1:68968159-68968178 None:intergenic 25.0%
! GCTAAACAAATGGTTAATTA+AGG + chr7_1:68968504-68968523 Msa1033720:intron 25.0%
! AATAATTGAGTATGTAGAAC+AGG - chr7_1:68968998-68969017 None:intergenic 25.0%
!!! TCAATTATTTTTGTTGTTGC+AGG + chr7_1:68969009-68969028 Msa1033720:intron 25.0%
!! AAGGCAAACTAAATTTTTGA+GGG - chr7_1:68969188-68969207 None:intergenic 25.0%
!! TTTTTACATTCTTGCCAAAA+GGG - chr7_1:68969297-68969316 None:intergenic 25.0%
!!! TTTTTTACATTCTTGCCAAA+AGG - chr7_1:68969298-68969317 None:intergenic 25.0%
!! AAATGTGAATTTATTGGTCT+CGG + chr7_1:68969476-68969495 Msa1033720:three_prime_UTR 25.0%
! GGGGAAAATTGAAAAAAATA+GGG - chr7_1:68965782-68965801 None:intergenic 25.0%
! AGGGGAAAATTGAAAAAAAT+AGG - chr7_1:68965783-68965802 None:intergenic 25.0%
!!! GAGATAATTTGATTTGAAAG+GGG - chr7_1:68965801-68965820 None:intergenic 25.0%
!! TGAATCTGTTGTTTATGTAA+TGG + chr7_1:68965832-68965851 Msa1033720:intron 25.0%
! TTGTTTATGTAATGGTTGAA+GGG + chr7_1:68965840-68965859 Msa1033720:intron 25.0%
!! TACATACCTAATGAGATTTT+TGG - chr7_1:68965926-68965945 None:intergenic 25.0%
!!! CTAGTTTCTTTTTAGTTGAA+AGG + chr7_1:68966177-68966196 Msa1033720:intron 25.0%
!!! TTTTTAGTTGAAAGGAAATG+AGG + chr7_1:68966185-68966204 Msa1033720:intron 25.0%
! AAATGAGGAAGTTAATTACT+AGG + chr7_1:68966200-68966219 Msa1033720:intron 25.0%
! GCTCATAATAAATGATCATT+TGG + chr7_1:68966418-68966437 Msa1033720:intron 25.0%
!! TTATTTTCCTACAGAACAAT+TGG - chr7_1:68966586-68966605 None:intergenic 25.0%
! GAATCAGGAAAAAATTATTG+AGG + chr7_1:68966653-68966672 Msa1033720:intron 25.0%
! ATCAGGAAAAAATTATTGAG+GGG + chr7_1:68966655-68966674 Msa1033720:intron 25.0%
!! AGTAAACATTTTCTACTTAG+CGG - chr7_1:68967103-68967122 None:intergenic 25.0%
! ATTTAATGAAGTATGTTGCT+TGG - chr7_1:68967175-68967194 None:intergenic 25.0%
!! TCACAATACTGTTTTATAGA+AGG + chr7_1:68967330-68967349 Msa1033720:intron 25.0%
! ATTGCTTCAGAAAAATGTTT+AGG + chr7_1:68967403-68967422 Msa1033720:intron 25.0%
! GTTACTTGTAGTAATTAAGT+CGG + chr7_1:68967642-68967661 Msa1033720:intron 25.0%
! GATACTTGTAGTAATTAAGT+CGG + chr7_1:68967664-68967683 Msa1033720:intron 25.0%
!!! GGATAATATTCACTTTTGAT+TGG + chr7_1:68967685-68967704 Msa1033720:intron 25.0%
!! AACCAAATAGAATTTGTTTC+TGG + chr7_1:68967734-68967753 Msa1033720:intron 25.0%
! TTCCAGAAACAAATTCTATT+TGG - chr7_1:68967739-68967758 None:intergenic 25.0%
! TGAATATTTCCGTAAATTCA+TGG + chr7_1:68968062-68968081 Msa1033720:intron 25.0%
! GAATATTTCCGTAAATTCAT+GGG + chr7_1:68968063-68968082 Msa1033720:intron 25.0%
! CAAAGTGATACTCTAATTAT+TGG + chr7_1:68968103-68968122 Msa1033720:intron 25.0%
!!! ATTCTTTCTTTTTTTGGTCA+AGG - chr7_1:68968159-68968178 None:intergenic 25.0%
! GCTAAACAAATGGTTAATTA+AGG + chr7_1:68968504-68968523 Msa1033720:intron 25.0%
! AATAATTGAGTATGTAGAAC+AGG - chr7_1:68968998-68969017 None:intergenic 25.0%
!!! TCAATTATTTTTGTTGTTGC+AGG + chr7_1:68969009-68969028 Msa1033720:intron 25.0%
!! AAGGCAAACTAAATTTTTGA+GGG - chr7_1:68969188-68969207 None:intergenic 25.0%
!! TTTTTACATTCTTGCCAAAA+GGG - chr7_1:68969297-68969316 None:intergenic 25.0%
!!! TTTTTTACATTCTTGCCAAA+AGG - chr7_1:68969298-68969317 None:intergenic 25.0%
!! AAATGTGAATTTATTGGTCT+CGG + chr7_1:68969476-68969495 Msa1033720:three_prime_UTR 25.0%
GTTGTTTATGTAATGGTTGA+AGG + chr7_1:68965839-68965858 Msa1033720:intron 30.0%
TGTTTATGTAATGGTTGAAG+GGG + chr7_1:68965841-68965860 Msa1033720:intron 30.0%
TCACTTCCAAAAATCTCATT+AGG + chr7_1:68965917-68965936 Msa1033720:CDS 30.0%
! CTCGATGATAAGTTTTACAA+TGG + chr7_1:68966000-68966019 Msa1033720:intron 30.0%
! TCTGTTGATTGAACTTAGAT+AGG + chr7_1:68966039-68966058 Msa1033720:intron 30.0%
! CTGTTGATTGAACTTAGATA+GGG + chr7_1:68966040-68966059 Msa1033720:intron 30.0%
! GTTTTGCTTTGATTGATGTT+TGG + chr7_1:68966078-68966097 Msa1033720:intron 30.0%
AAAGGAATTGTTATAGAGCT+TGG + chr7_1:68966106-68966125 Msa1033720:intron 30.0%
!!! TTACTTTTTTGGCGACTTAA+TGG + chr7_1:68966270-68966289 Msa1033720:intron 30.0%
!!! TACTTTTTTGGCGACTTAAT+GGG + chr7_1:68966271-68966290 Msa1033720:intron 30.0%
!!! ATCTGTCATTTTTAGTGTTG+AGG + chr7_1:68966331-68966350 Msa1033720:intron 30.0%
AAGCGATATTACTATGTATC+TGG + chr7_1:68966360-68966379 Msa1033720:intron 30.0%
ATCATTTGGTCTGATATGAA+GGG + chr7_1:68966432-68966451 Msa1033720:intron 30.0%
TCACTGTGTAATCATACAAT+TGG + chr7_1:68966540-68966559 Msa1033720:intron 30.0%
TCAGGAAAAAATTATTGAGG+GGG + chr7_1:68966656-68966675 Msa1033720:intron 30.0%
!! ATGTTTACTTTTGGATTTGG+CGG + chr7_1:68967114-68967133 Msa1033720:intron 30.0%
GATAAATGAGAAAGACTTGT+TGG - chr7_1:68967209-68967228 None:intergenic 30.0%
!!! TTTTCTGAAGCAATTGTTGA+GGG - chr7_1:68967397-68967416 None:intergenic 30.0%
!!! TTTTTCTGAAGCAATTGTTG+AGG - chr7_1:68967398-68967417 None:intergenic 30.0%
AATCACGCAGAACAAAAATT+TGG - chr7_1:68967491-68967510 None:intergenic 30.0%
GGTTAATAACTAATACTACC+AGG - chr7_1:68967567-68967586 None:intergenic 30.0%
!!! GGTCTTTTTTGATAGTTTTC+TGG - chr7_1:68967782-68967801 None:intergenic 30.0%
AACTATCAAAAAAGACCCAA+AGG + chr7_1:68967785-68967804 Msa1033720:intron 30.0%
! CAAGTGAAATAATTTTGTGG+AGG + chr7_1:68967914-68967933 Msa1033720:intron 30.0%
GTAACATGATATATACCAAG+TGG + chr7_1:68967952-68967971 Msa1033720:intron 30.0%
TTTGATGCAAGGAAAATCAA+AGG - chr7_1:68968202-68968221 None:intergenic 30.0%
AGATCTCAACACATAATCTT+TGG + chr7_1:68968243-68968262 Msa1033720:intron 30.0%
!!! GTTTTGGTTATGTTTTACAG+AGG + chr7_1:68968283-68968302 Msa1033720:intron 30.0%
!!! GTTTTGGTTATGTTTTACAG+AGG + chr7_1:68968283-68968302 Msa1033720:intron 30.0%
ACAGTTCATAGTGAAAATCT+TGG - chr7_1:68968401-68968420 None:intergenic 30.0%
!! AACCTTTAAGGCTAAACAAA+TGG + chr7_1:68968494-68968513 Msa1033720:intron 30.0%
!! AACCATTTGTTTAGCCTTAA+AGG - chr7_1:68968499-68968518 None:intergenic 30.0%
!! TTGACTTTGACTTGACAATA+TGG + chr7_1:68968701-68968720 Msa1033720:intron 30.0%
! GGTTCATAGATACTTGATTT+TGG - chr7_1:68968827-68968846 None:intergenic 30.0%
ATTCTTGTGATTGAGATCTT+TGG + chr7_1:68969101-68969120 Msa1033720:CDS 30.0%
TTCCAACAATAACTCCAAAT+AGG - chr7_1:68969139-68969158 None:intergenic 30.0%
! CAAGGCAAACTAAATTTTTG+AGG - chr7_1:68969189-68969208 None:intergenic 30.0%
GTTGTTTATGTAATGGTTGA+AGG + chr7_1:68965839-68965858 Msa1033720:intron 30.0%
TGTTTATGTAATGGTTGAAG+GGG + chr7_1:68965841-68965860 Msa1033720:intron 30.0%
TCACTTCCAAAAATCTCATT+AGG + chr7_1:68965917-68965936 Msa1033720:CDS 30.0%
! CTCGATGATAAGTTTTACAA+TGG + chr7_1:68966000-68966019 Msa1033720:intron 30.0%
! TCTGTTGATTGAACTTAGAT+AGG + chr7_1:68966039-68966058 Msa1033720:intron 30.0%
! CTGTTGATTGAACTTAGATA+GGG + chr7_1:68966040-68966059 Msa1033720:intron 30.0%
! GTTTTGCTTTGATTGATGTT+TGG + chr7_1:68966078-68966097 Msa1033720:intron 30.0%
AAAGGAATTGTTATAGAGCT+TGG + chr7_1:68966106-68966125 Msa1033720:intron 30.0%
!!! TTACTTTTTTGGCGACTTAA+TGG + chr7_1:68966270-68966289 Msa1033720:intron 30.0%
!!! TACTTTTTTGGCGACTTAAT+GGG + chr7_1:68966271-68966290 Msa1033720:intron 30.0%
!!! ATCTGTCATTTTTAGTGTTG+AGG + chr7_1:68966331-68966350 Msa1033720:intron 30.0%
AAGCGATATTACTATGTATC+TGG + chr7_1:68966360-68966379 Msa1033720:intron 30.0%
ATCATTTGGTCTGATATGAA+GGG + chr7_1:68966432-68966451 Msa1033720:intron 30.0%
TCACTGTGTAATCATACAAT+TGG + chr7_1:68966540-68966559 Msa1033720:intron 30.0%
TCAGGAAAAAATTATTGAGG+GGG + chr7_1:68966656-68966675 Msa1033720:intron 30.0%
!! ATGTTTACTTTTGGATTTGG+CGG + chr7_1:68967114-68967133 Msa1033720:intron 30.0%
GATAAATGAGAAAGACTTGT+TGG - chr7_1:68967209-68967228 None:intergenic 30.0%
!!! TTTTCTGAAGCAATTGTTGA+GGG - chr7_1:68967397-68967416 None:intergenic 30.0%
!!! TTTTTCTGAAGCAATTGTTG+AGG - chr7_1:68967398-68967417 None:intergenic 30.0%
AATCACGCAGAACAAAAATT+TGG - chr7_1:68967491-68967510 None:intergenic 30.0%
GGTTAATAACTAATACTACC+AGG - chr7_1:68967567-68967586 None:intergenic 30.0%
!!! GGTCTTTTTTGATAGTTTTC+TGG - chr7_1:68967782-68967801 None:intergenic 30.0%
AACTATCAAAAAAGACCCAA+AGG + chr7_1:68967785-68967804 Msa1033720:intron 30.0%
! CAAGTGAAATAATTTTGTGG+AGG + chr7_1:68967914-68967933 Msa1033720:intron 30.0%
GTAACATGATATATACCAAG+TGG + chr7_1:68967952-68967971 Msa1033720:intron 30.0%
TTTGATGCAAGGAAAATCAA+AGG - chr7_1:68968202-68968221 None:intergenic 30.0%
AGATCTCAACACATAATCTT+TGG + chr7_1:68968243-68968262 Msa1033720:intron 30.0%
!!! GTTTTGGTTATGTTTTACAG+AGG + chr7_1:68968283-68968302 Msa1033720:intron 30.0%
!!! GTTTTGGTTATGTTTTACAG+AGG + chr7_1:68968283-68968302 Msa1033720:intron 30.0%
ACAGTTCATAGTGAAAATCT+TGG - chr7_1:68968401-68968420 None:intergenic 30.0%
!! AACCTTTAAGGCTAAACAAA+TGG + chr7_1:68968494-68968513 Msa1033720:intron 30.0%
!! AACCATTTGTTTAGCCTTAA+AGG - chr7_1:68968499-68968518 None:intergenic 30.0%
!! TTGACTTTGACTTGACAATA+TGG + chr7_1:68968701-68968720 Msa1033720:intron 30.0%
! GGTTCATAGATACTTGATTT+TGG - chr7_1:68968827-68968846 None:intergenic 30.0%
ATTCTTGTGATTGAGATCTT+TGG + chr7_1:68969101-68969120 Msa1033720:CDS 30.0%
TTCCAACAATAACTCCAAAT+AGG - chr7_1:68969139-68969158 None:intergenic 30.0%
! CAAGGCAAACTAAATTTTTG+AGG - chr7_1:68969189-68969208 None:intergenic 30.0%
TTGTGTAGTGAGATAGAAAG+AGG - chr7_1:68965574-68965593 None:intergenic 35.0%
!! AGATTTTTGGAAGTGATCCT+TGG - chr7_1:68965913-68965932 None:intergenic 35.0%
TTGCTTTGATTGATGTTTGG+AGG + chr7_1:68966081-68966100 Msa1033720:intron 35.0%
!!! TGTCATTTTTAGTGTTGAGG+AGG + chr7_1:68966334-68966353 Msa1033720:intron 35.0%
GATCATTTGGTCTGATATGA+AGG + chr7_1:68966431-68966450 Msa1033720:intron 35.0%
TGATTACACAGTGAGTTTAG+TGG - chr7_1:68966534-68966553 None:intergenic 35.0%
CAGGAAAAAATTATTGAGGG+GGG + chr7_1:68966657-68966676 Msa1033720:intron 35.0%
AAAAAATTATTGAGGGGGGT+GGG + chr7_1:68966661-68966680 Msa1033720:intron 35.0%
ATTGTTGATCGAGCTCAAAA+TGG + chr7_1:68966988-68967007 Msa1033720:intron 35.0%
TTAGCGGTTCTCATGATAAA+AGG - chr7_1:68967087-68967106 None:intergenic 35.0%
!! TGTTTACTTTTGGATTTGGC+GGG + chr7_1:68967115-68967134 Msa1033720:intron 35.0%
!! TTTCTGAAGCAATTGTTGAG+GGG - chr7_1:68967396-68967415 None:intergenic 35.0%
!! GTTCTGCGTGATTTGTTTAA+AGG + chr7_1:68967498-68967517 Msa1033720:intron 35.0%
CTACATCAATTAAACGACAC+TGG - chr7_1:68967535-68967554 None:intergenic 35.0%
!!! GTTGCTTTTGTTGCTTTGTT+TGG + chr7_1:68967612-68967631 Msa1033720:intron 35.0%
TTGATTGGCACACCAAAATT+AGG + chr7_1:68967700-68967719 Msa1033720:intron 35.0%
!! TTTGATAGTTTTCTGGTGTC+TGG - chr7_1:68967775-68967794 None:intergenic 35.0%
AAAAAAGACCCAAAGGTCAA+TGG + chr7_1:68967792-68967811 Msa1033720:intron 35.0%
ATTTCCGTAAATTCATGGGT+TGG + chr7_1:68968067-68968086 Msa1033720:intron 35.0%
TTTCCGTAAATTCATGGGTT+GGG + chr7_1:68968068-68968087 Msa1033720:intron 35.0%
TATCCCAACCCATGAATTTA+CGG - chr7_1:68968074-68968093 None:intergenic 35.0%
! ATTTTCCTTGCATCAAAGCA+TGG + chr7_1:68968205-68968224 Msa1033720:intron 35.0%
AAAGCATGGTAAAGTGATTG+TGG + chr7_1:68968219-68968238 Msa1033720:intron 35.0%
! AACACATAATCTTTGGCTTC+TGG + chr7_1:68968250-68968269 Msa1033720:intron 35.0%
!! TATTGGTGTGTGTTTGGTTT+TGG + chr7_1:68968331-68968350 Msa1033720:intron 35.0%
AACGTGAGATTCTTACATGA+TGG - chr7_1:68968468-68968487 None:intergenic 35.0%
! CACGTTTTCTCAAACCTTTA+AGG + chr7_1:68968482-68968501 Msa1033720:intron 35.0%
! TTACATTTGAGTGTTGTGAG+TGG + chr7_1:68968590-68968609 Msa1033720:intron 35.0%
TGTGAAGCTGTTGCTATATA+TGG + chr7_1:68968758-68968777 Msa1033720:CDS 35.0%
TTTGCTTCTGGACTTATTGT+GGG + chr7_1:68968875-68968894 Msa1033720:CDS 35.0%
TTGTGAAGATGTGAATATGC+AGG - chr7_1:68968939-68968958 None:intergenic 35.0%
CATCTTCACAAGAATTCTCA+TGG + chr7_1:68968948-68968967 Msa1033720:intron 35.0%
AGAATTCTCATGGAGAATGT+AGG + chr7_1:68968958-68968977 Msa1033720:intron 35.0%
GAATTCTCATGGAGAATGTA+GGG + chr7_1:68968959-68968978 Msa1033720:intron 35.0%
TATGTAGAACAGGATGGATA+AGG - chr7_1:68968988-68969007 None:intergenic 35.0%
ATTGAGTATGTAGAACAGGA+TGG - chr7_1:68968994-68969013 None:intergenic 35.0%
! AAGAATTTTCACGAAGAGAG+AGG - chr7_1:68969087-68969106 None:intergenic 35.0%
AATACAGCCTACAGTTGTAA+TGG - chr7_1:68969340-68969359 None:intergenic 35.0%
TCTACCAGAGTTGTTATAGA+AGG + chr7_1:68969361-68969380 Msa1033720:three_prime_UTR 35.0%
CTACCAGAGTTGTTATAGAA+GGG + chr7_1:68969362-68969381 Msa1033720:three_prime_UTR 35.0%
TGATATATCTGATGACACAC+AGG - chr7_1:68969388-68969407 None:intergenic 35.0%
TTGTGTAGTGAGATAGAAAG+AGG - chr7_1:68965574-68965593 None:intergenic 35.0%
!! AGATTTTTGGAAGTGATCCT+TGG - chr7_1:68965913-68965932 None:intergenic 35.0%
TTGCTTTGATTGATGTTTGG+AGG + chr7_1:68966081-68966100 Msa1033720:intron 35.0%
!!! TGTCATTTTTAGTGTTGAGG+AGG + chr7_1:68966334-68966353 Msa1033720:intron 35.0%
GATCATTTGGTCTGATATGA+AGG + chr7_1:68966431-68966450 Msa1033720:intron 35.0%
TGATTACACAGTGAGTTTAG+TGG - chr7_1:68966534-68966553 None:intergenic 35.0%
CAGGAAAAAATTATTGAGGG+GGG + chr7_1:68966657-68966676 Msa1033720:intron 35.0%
AAAAAATTATTGAGGGGGGT+GGG + chr7_1:68966661-68966680 Msa1033720:intron 35.0%
ATTGTTGATCGAGCTCAAAA+TGG + chr7_1:68966988-68967007 Msa1033720:intron 35.0%
TTAGCGGTTCTCATGATAAA+AGG - chr7_1:68967087-68967106 None:intergenic 35.0%
!! TGTTTACTTTTGGATTTGGC+GGG + chr7_1:68967115-68967134 Msa1033720:intron 35.0%
!! TTTCTGAAGCAATTGTTGAG+GGG - chr7_1:68967396-68967415 None:intergenic 35.0%
!! GTTCTGCGTGATTTGTTTAA+AGG + chr7_1:68967498-68967517 Msa1033720:intron 35.0%
CTACATCAATTAAACGACAC+TGG - chr7_1:68967535-68967554 None:intergenic 35.0%
!!! GTTGCTTTTGTTGCTTTGTT+TGG + chr7_1:68967612-68967631 Msa1033720:intron 35.0%
TTGATTGGCACACCAAAATT+AGG + chr7_1:68967700-68967719 Msa1033720:intron 35.0%
!! TTTGATAGTTTTCTGGTGTC+TGG - chr7_1:68967775-68967794 None:intergenic 35.0%
AAAAAAGACCCAAAGGTCAA+TGG + chr7_1:68967792-68967811 Msa1033720:intron 35.0%
ATTTCCGTAAATTCATGGGT+TGG + chr7_1:68968067-68968086 Msa1033720:intron 35.0%
TTTCCGTAAATTCATGGGTT+GGG + chr7_1:68968068-68968087 Msa1033720:intron 35.0%
TATCCCAACCCATGAATTTA+CGG - chr7_1:68968074-68968093 None:intergenic 35.0%
! ATTTTCCTTGCATCAAAGCA+TGG + chr7_1:68968205-68968224 Msa1033720:intron 35.0%
AAAGCATGGTAAAGTGATTG+TGG + chr7_1:68968219-68968238 Msa1033720:intron 35.0%
! AACACATAATCTTTGGCTTC+TGG + chr7_1:68968250-68968269 Msa1033720:intron 35.0%
!! TATTGGTGTGTGTTTGGTTT+TGG + chr7_1:68968331-68968350 Msa1033720:intron 35.0%
AACGTGAGATTCTTACATGA+TGG - chr7_1:68968468-68968487 None:intergenic 35.0%
! CACGTTTTCTCAAACCTTTA+AGG + chr7_1:68968482-68968501 Msa1033720:intron 35.0%
! TTACATTTGAGTGTTGTGAG+TGG + chr7_1:68968590-68968609 Msa1033720:intron 35.0%
TGTGAAGCTGTTGCTATATA+TGG + chr7_1:68968758-68968777 Msa1033720:CDS 35.0%
TTTGCTTCTGGACTTATTGT+GGG + chr7_1:68968875-68968894 Msa1033720:CDS 35.0%
TTGTGAAGATGTGAATATGC+AGG - chr7_1:68968939-68968958 None:intergenic 35.0%
CATCTTCACAAGAATTCTCA+TGG + chr7_1:68968948-68968967 Msa1033720:intron 35.0%
AGAATTCTCATGGAGAATGT+AGG + chr7_1:68968958-68968977 Msa1033720:intron 35.0%
GAATTCTCATGGAGAATGTA+GGG + chr7_1:68968959-68968978 Msa1033720:intron 35.0%
TATGTAGAACAGGATGGATA+AGG - chr7_1:68968988-68969007 None:intergenic 35.0%
ATTGAGTATGTAGAACAGGA+TGG - chr7_1:68968994-68969013 None:intergenic 35.0%
! AAGAATTTTCACGAAGAGAG+AGG - chr7_1:68969087-68969106 None:intergenic 35.0%
AATACAGCCTACAGTTGTAA+TGG - chr7_1:68969340-68969359 None:intergenic 35.0%
TCTACCAGAGTTGTTATAGA+AGG + chr7_1:68969361-68969380 Msa1033720:three_prime_UTR 35.0%
CTACCAGAGTTGTTATAGAA+GGG + chr7_1:68969362-68969381 Msa1033720:three_prime_UTR 35.0%
TGATATATCTGATGACACAC+AGG - chr7_1:68969388-68969407 None:intergenic 35.0%
TGAAGGGGAATTTACATCAC+CGG + chr7_1:68965856-68965875 Msa1033720:intron 40.0%
ATCACCGGTAGTAGTTTGAT+CGG + chr7_1:68965871-68965890 Msa1033720:CDS 40.0%
GATTGATGTTTGGAGGAGAA+AGG + chr7_1:68966088-68966107 Msa1033720:intron 40.0%
!!! TTTTTTGGCGACTTAATGGG+TGG + chr7_1:68966274-68966293 Msa1033720:intron 40.0%
!! TTTTTGGCGACTTAATGGGT+GGG + chr7_1:68966275-68966294 Msa1033720:intron 40.0%
TTACACAGTGAGTTTAGTGG+AGG - chr7_1:68966531-68966550 None:intergenic 40.0%
CTTTGGTCCAATTGTTCTGT+AGG + chr7_1:68966576-68966595 Msa1033720:intron 40.0%
GAAAAAATTATTGAGGGGGG+TGG + chr7_1:68966660-68966679 Msa1033720:intron 40.0%
AAATACACAGAGACGGAACT+AGG - chr7_1:68966771-68966790 None:intergenic 40.0%
TCTATGCATGTAACAGTGAG+TGG + chr7_1:68966878-68966897 Msa1033720:intron 40.0%
CTATGCATGTAACAGTGAGT+GGG + chr7_1:68966879-68966898 Msa1033720:intron 40.0%
! CAATGCTACTTAGTGGTAAC+TGG - chr7_1:68967018-68967037 None:intergenic 40.0%
! CCAACTACAATGCTACTTAG+TGG - chr7_1:68967025-68967044 None:intergenic 40.0%
CCACTAAGTAGCATTGTAGT+TGG + chr7_1:68967022-68967041 Msa1033720:intron 40.0%
! CTAGCTCATTTGGTTTAGTG+TGG + chr7_1:68967252-68967271 Msa1033720:intron 40.0%
TTGATGTAGCTAACTTCACC+TGG + chr7_1:68967546-68967565 Msa1033720:intron 40.0%
TAAGCCAACCATTGACCTTT+GGG - chr7_1:68967803-68967822 None:intergenic 40.0%
TTAAGCCAACCATTGACCTT+TGG - chr7_1:68967804-68967823 None:intergenic 40.0%
CTTTACCATGCTTTGATGCA+AGG - chr7_1:68968213-68968232 None:intergenic 40.0%
!! TTCTGGTGTGTGTTTGGTTT+TGG + chr7_1:68968267-68968286 Msa1033720:intron 40.0%
AAGCTCTATTGGTGTGTGTT+TGG + chr7_1:68968325-68968344 Msa1033720:intron 40.0%
GTTCCAAATACAACCGTTTG+TGG + chr7_1:68968675-68968694 Msa1033720:intron 40.0%
TCAAAGTCAAGTGCCACAAA+CGG - chr7_1:68968691-68968710 None:intergenic 40.0%
! CGCTTTCTAATTTTGTCTGC+AGG - chr7_1:68968802-68968821 None:intergenic 40.0%
!! TATCCAGCTCTAAGAGATTC+TGG - chr7_1:68968848-68968867 None:intergenic 40.0%
GGATATGCAATCTTTGCTTC+TGG + chr7_1:68968863-68968882 Msa1033720:CDS 40.0%
CTTTGCTTCTGGACTTATTG+TGG + chr7_1:68968874-68968893 Msa1033720:CDS 40.0%
! GCTTCGCAAATCTTGTTTGT+GGG + chr7_1:68968897-68968916 Msa1033720:CDS 40.0%
AGGTTGTGTGTAGGCATAAT+TGG + chr7_1:68969029-68969048 Msa1033720:intron 40.0%
! GGCCTATTTGGAGTTATTGT+TGG + chr7_1:68969134-68969153 Msa1033720:CDS 40.0%
TTATGTCAGCTCAAGCAACA+TGG + chr7_1:68969162-68969181 Msa1033720:CDS 40.0%
AGTGTGCGGGAATTCAATTA+CGG + chr7_1:68969216-68969235 Msa1033720:three_prime_UTR 40.0%
ATGGACACAAGCTATCATGT+CGG - chr7_1:68969321-68969340 None:intergenic 40.0%
CTTGTGTCCATTACAACTGT+AGG + chr7_1:68969330-68969349 Msa1033720:three_prime_UTR 40.0%
TGAAGGGGAATTTACATCAC+CGG + chr7_1:68965856-68965875 Msa1033720:intron 40.0%
ATCACCGGTAGTAGTTTGAT+CGG + chr7_1:68965871-68965890 Msa1033720:CDS 40.0%
GATTGATGTTTGGAGGAGAA+AGG + chr7_1:68966088-68966107 Msa1033720:intron 40.0%
!!! TTTTTTGGCGACTTAATGGG+TGG + chr7_1:68966274-68966293 Msa1033720:intron 40.0%
!! TTTTTGGCGACTTAATGGGT+GGG + chr7_1:68966275-68966294 Msa1033720:intron 40.0%
TTACACAGTGAGTTTAGTGG+AGG - chr7_1:68966531-68966550 None:intergenic 40.0%
CTTTGGTCCAATTGTTCTGT+AGG + chr7_1:68966576-68966595 Msa1033720:intron 40.0%
GAAAAAATTATTGAGGGGGG+TGG + chr7_1:68966660-68966679 Msa1033720:intron 40.0%
AAATACACAGAGACGGAACT+AGG - chr7_1:68966771-68966790 None:intergenic 40.0%
TCTATGCATGTAACAGTGAG+TGG + chr7_1:68966878-68966897 Msa1033720:intron 40.0%
CTATGCATGTAACAGTGAGT+GGG + chr7_1:68966879-68966898 Msa1033720:intron 40.0%
! CAATGCTACTTAGTGGTAAC+TGG - chr7_1:68967018-68967037 None:intergenic 40.0%
! CCAACTACAATGCTACTTAG+TGG - chr7_1:68967025-68967044 None:intergenic 40.0%
CCACTAAGTAGCATTGTAGT+TGG + chr7_1:68967022-68967041 Msa1033720:intron 40.0%
! CTAGCTCATTTGGTTTAGTG+TGG + chr7_1:68967252-68967271 Msa1033720:intron 40.0%
TTGATGTAGCTAACTTCACC+TGG + chr7_1:68967546-68967565 Msa1033720:intron 40.0%
TAAGCCAACCATTGACCTTT+GGG - chr7_1:68967803-68967822 None:intergenic 40.0%
TTAAGCCAACCATTGACCTT+TGG - chr7_1:68967804-68967823 None:intergenic 40.0%
CTTTACCATGCTTTGATGCA+AGG - chr7_1:68968213-68968232 None:intergenic 40.0%
!! TTCTGGTGTGTGTTTGGTTT+TGG + chr7_1:68968267-68968286 Msa1033720:intron 40.0%
AAGCTCTATTGGTGTGTGTT+TGG + chr7_1:68968325-68968344 Msa1033720:intron 40.0%
GTTCCAAATACAACCGTTTG+TGG + chr7_1:68968675-68968694 Msa1033720:intron 40.0%
TCAAAGTCAAGTGCCACAAA+CGG - chr7_1:68968691-68968710 None:intergenic 40.0%
! CGCTTTCTAATTTTGTCTGC+AGG - chr7_1:68968802-68968821 None:intergenic 40.0%
!! TATCCAGCTCTAAGAGATTC+TGG - chr7_1:68968848-68968867 None:intergenic 40.0%
GGATATGCAATCTTTGCTTC+TGG + chr7_1:68968863-68968882 Msa1033720:CDS 40.0%
CTTTGCTTCTGGACTTATTG+TGG + chr7_1:68968874-68968893 Msa1033720:CDS 40.0%
! GCTTCGCAAATCTTGTTTGT+GGG + chr7_1:68968897-68968916 Msa1033720:CDS 40.0%
AGGTTGTGTGTAGGCATAAT+TGG + chr7_1:68969029-68969048 Msa1033720:intron 40.0%
! GGCCTATTTGGAGTTATTGT+TGG + chr7_1:68969134-68969153 Msa1033720:CDS 40.0%
TTATGTCAGCTCAAGCAACA+TGG + chr7_1:68969162-68969181 Msa1033720:CDS 40.0%
AGTGTGCGGGAATTCAATTA+CGG + chr7_1:68969216-68969235 Msa1033720:three_prime_UTR 40.0%
ATGGACACAAGCTATCATGT+CGG - chr7_1:68969321-68969340 None:intergenic 40.0%
CTTGTGTCCATTACAACTGT+AGG + chr7_1:68969330-68969349 Msa1033720:three_prime_UTR 40.0%
TGTTACGTGAGGAGAGGATT+GGG - chr7_1:68965614-68965633 None:intergenic 45.0%
TTGTTACGTGAGGAGAGGAT+TGG - chr7_1:68965615-68965634 None:intergenic 45.0%
ATCGTGATGGTTGTTACGTG+AGG - chr7_1:68965625-68965644 None:intergenic 45.0%
! CCATACACCTTTTCCGCAAT+CGG + chr7_1:68965709-68965728 Msa1033720:CDS 45.0%
!! AGCACCGATCAAACTACTAC+CGG - chr7_1:68965878-68965897 None:intergenic 45.0%
!! TTTGATCGGTGCTGCTATCA+AGG + chr7_1:68965885-68965904 Msa1033720:CDS 45.0%
! TTGGCCACAACAAAGCACTT+TGG + chr7_1:68966559-68966578 Msa1033720:intron 45.0%
! TGGACCAAAGTGCTTTGTTG+TGG - chr7_1:68966566-68966585 None:intergenic 45.0%
!! TTACTTTTGGATTTGGCGGG+TGG + chr7_1:68967118-68967137 Msa1033720:intron 45.0%
ACCAAATGAGCTAGTGCAGA+GGG - chr7_1:68967246-68967265 None:intergenic 45.0%
AACCAAATGAGCTAGTGCAG+AGG - chr7_1:68967247-68967266 None:intergenic 45.0%
! AGTGTGGTTTGTCCTCCATT+TGG + chr7_1:68967268-68967287 Msa1033720:intron 45.0%
! GTGTGGTTTGTCCTCCATTT+GGG + chr7_1:68967269-68967288 Msa1033720:intron 45.0%
ATGTCACTGGTACACCCAAA+TGG - chr7_1:68967286-68967305 None:intergenic 45.0%
GGTGTACCAGTGACATCAAT+CGG + chr7_1:68967290-68967309 Msa1033720:intron 45.0%
AAGACCCAAAGGTCAATGGT+TGG + chr7_1:68967796-68967815 Msa1033720:intron 45.0%
ACTATCACTCAGCTTCCACT+TGG - chr7_1:68967970-68967989 None:intergenic 45.0%
! TTTGGCTTCTGGTGTGTGTT+TGG + chr7_1:68968261-68968280 Msa1033720:intron 45.0%
GTGCCACAAACGGTTGTATT+TGG - chr7_1:68968681-68968700 None:intergenic 45.0%
GAACCAGAATCTCTTAGAGC+TGG + chr7_1:68968842-68968861 Msa1033720:CDS 45.0%
! GGCTTCGCAAATCTTGTTTG+TGG + chr7_1:68968896-68968915 Msa1033720:CDS 45.0%
TGTTGTTGCAGGTTGTGTGT+AGG + chr7_1:68969020-68969039 Msa1033720:intron 45.0%
TGCCTTGTATCATCAGTGTG+CGG + chr7_1:68969202-68969221 Msa1033720:three_prime_UTR 45.0%
!! TCTCTGCTGCTTATCCCTTT+TGG + chr7_1:68969280-68969299 Msa1033720:three_prime_UTR 45.0%
AGGCCCTTCTATAACAACTC+TGG - chr7_1:68969368-68969387 None:intergenic 45.0%
TGGTCTCGGCAATAAAGTCA+AGG + chr7_1:68969490-68969509 Msa1033720:three_prime_UTR 45.0%
! AGGCTTCAGATGTACTGATG+AGG + chr7_1:68969510-68969529 Msa1033720:three_prime_UTR 45.0%
TGTTACGTGAGGAGAGGATT+GGG - chr7_1:68965614-68965633 None:intergenic 45.0%
TTGTTACGTGAGGAGAGGAT+TGG - chr7_1:68965615-68965634 None:intergenic 45.0%
ATCGTGATGGTTGTTACGTG+AGG - chr7_1:68965625-68965644 None:intergenic 45.0%
! CCATACACCTTTTCCGCAAT+CGG + chr7_1:68965709-68965728 Msa1033720:CDS 45.0%
!! AGCACCGATCAAACTACTAC+CGG - chr7_1:68965878-68965897 None:intergenic 45.0%
!! TTTGATCGGTGCTGCTATCA+AGG + chr7_1:68965885-68965904 Msa1033720:CDS 45.0%
! TTGGCCACAACAAAGCACTT+TGG + chr7_1:68966559-68966578 Msa1033720:intron 45.0%
! TGGACCAAAGTGCTTTGTTG+TGG - chr7_1:68966566-68966585 None:intergenic 45.0%
!! TTACTTTTGGATTTGGCGGG+TGG + chr7_1:68967118-68967137 Msa1033720:intron 45.0%
ACCAAATGAGCTAGTGCAGA+GGG - chr7_1:68967246-68967265 None:intergenic 45.0%
AACCAAATGAGCTAGTGCAG+AGG - chr7_1:68967247-68967266 None:intergenic 45.0%
! AGTGTGGTTTGTCCTCCATT+TGG + chr7_1:68967268-68967287 Msa1033720:intron 45.0%
! GTGTGGTTTGTCCTCCATTT+GGG + chr7_1:68967269-68967288 Msa1033720:intron 45.0%
ATGTCACTGGTACACCCAAA+TGG - chr7_1:68967286-68967305 None:intergenic 45.0%
GGTGTACCAGTGACATCAAT+CGG + chr7_1:68967290-68967309 Msa1033720:intron 45.0%
AAGACCCAAAGGTCAATGGT+TGG + chr7_1:68967796-68967815 Msa1033720:intron 45.0%
ACTATCACTCAGCTTCCACT+TGG - chr7_1:68967970-68967989 None:intergenic 45.0%
! TTTGGCTTCTGGTGTGTGTT+TGG + chr7_1:68968261-68968280 Msa1033720:intron 45.0%
GTGCCACAAACGGTTGTATT+TGG - chr7_1:68968681-68968700 None:intergenic 45.0%
GAACCAGAATCTCTTAGAGC+TGG + chr7_1:68968842-68968861 Msa1033720:CDS 45.0%
! GGCTTCGCAAATCTTGTTTG+TGG + chr7_1:68968896-68968915 Msa1033720:CDS 45.0%
TGTTGTTGCAGGTTGTGTGT+AGG + chr7_1:68969020-68969039 Msa1033720:intron 45.0%
TGCCTTGTATCATCAGTGTG+CGG + chr7_1:68969202-68969221 Msa1033720:three_prime_UTR 45.0%
!! TCTCTGCTGCTTATCCCTTT+TGG + chr7_1:68969280-68969299 Msa1033720:three_prime_UTR 45.0%
AGGCCCTTCTATAACAACTC+TGG - chr7_1:68969368-68969387 None:intergenic 45.0%
TGGTCTCGGCAATAAAGTCA+AGG + chr7_1:68969490-68969509 Msa1033720:three_prime_UTR 45.0%
! AGGCTTCAGATGTACTGATG+AGG + chr7_1:68969510-68969529 Msa1033720:three_prime_UTR 45.0%
AGAGGATTGGGATCGGATCT+TGG - chr7_1:68965602-68965621 None:intergenic 50.0%
GATGGTTGTTACGTGAGGAG+AGG - chr7_1:68965620-68965639 None:intergenic 50.0%
TGCAGAGCTAGACATCGTGA+TGG - chr7_1:68965638-68965657 None:intergenic 50.0%
TTGCAGCGCATTCAAGCTCT+TGG + chr7_1:68965662-68965681 Msa1033720:CDS 50.0%
TGCAGCGCATTCAAGCTCTT+GGG + chr7_1:68965663-68965682 Msa1033720:CDS 50.0%
! CCGATTGCGGAAAAGGTGTA+TGG - chr7_1:68965712-68965731 None:intergenic 50.0%
ATCGGTATCGCCGTCTCTAT+CGG + chr7_1:68965727-68965746 Msa1033720:CDS 50.0%
AACGGAGACACCGATAGAGA+CGG - chr7_1:68965740-68965759 None:intergenic 50.0%
! TCTATCGGTGTCTCCGTTCT+CGG + chr7_1:68965742-68965761 Msa1033720:CDS 50.0%
TCTAACACGACACAGTGGTG+AGG - chr7_1:68966629-68966648 None:intergenic 50.0%
TCACCACTGTGTCGTGTTAG+AGG + chr7_1:68966628-68966647 Msa1033720:intron 50.0%
AAATTATTGAGGGGGGTGGG+AGG + chr7_1:68966664-68966683 Msa1033720:intron 50.0%
TGCATGTAACAGTGAGTGGG+TGG + chr7_1:68966882-68966901 Msa1033720:intron 50.0%
AGTGCAGAGGGAAGTTGACA+TGG - chr7_1:68967234-68967253 None:intergenic 50.0%
TCCCTCTGCACTAGCTCATT+TGG + chr7_1:68967242-68967261 Msa1033720:intron 50.0%
TCACTGGTACACCCAAATGG+AGG - chr7_1:68967283-68967302 None:intergenic 50.0%
AGACAGCCGATTGATGTCAC+TGG - chr7_1:68967299-68967318 None:intergenic 50.0%
! AAGCCTTATCCCACTCTAGG+TGG - chr7_1:68967859-68967878 None:intergenic 50.0%
! GCTAAGCCTTATCCCACTCT+AGG - chr7_1:68967862-68967881 None:intergenic 50.0%
TGGAACTATTGCTGCTGTGC+AGG - chr7_1:68968661-68968680 None:intergenic 50.0%
!! GAGATCTTTGGTAGTGCGCT+TGG + chr7_1:68969113-68969132 Msa1033720:CDS 50.0%
GCCTTGTATCATCAGTGTGC+GGG + chr7_1:68969203-68969222 Msa1033720:three_prime_UTR 50.0%
TCCCGCACACTGATGATACA+AGG - chr7_1:68969207-68969226 None:intergenic 50.0%
AGAGGATTGGGATCGGATCT+TGG - chr7_1:68965602-68965621 None:intergenic 50.0%
GATGGTTGTTACGTGAGGAG+AGG - chr7_1:68965620-68965639 None:intergenic 50.0%
TGCAGAGCTAGACATCGTGA+TGG - chr7_1:68965638-68965657 None:intergenic 50.0%
TTGCAGCGCATTCAAGCTCT+TGG + chr7_1:68965662-68965681 Msa1033720:CDS 50.0%
TGCAGCGCATTCAAGCTCTT+GGG + chr7_1:68965663-68965682 Msa1033720:CDS 50.0%
! CCGATTGCGGAAAAGGTGTA+TGG - chr7_1:68965712-68965731 None:intergenic 50.0%
ATCGGTATCGCCGTCTCTAT+CGG + chr7_1:68965727-68965746 Msa1033720:CDS 50.0%
AACGGAGACACCGATAGAGA+CGG - chr7_1:68965740-68965759 None:intergenic 50.0%
! TCTATCGGTGTCTCCGTTCT+CGG + chr7_1:68965742-68965761 Msa1033720:CDS 50.0%
TCTAACACGACACAGTGGTG+AGG - chr7_1:68966629-68966648 None:intergenic 50.0%
TCACCACTGTGTCGTGTTAG+AGG + chr7_1:68966628-68966647 Msa1033720:intron 50.0%
AAATTATTGAGGGGGGTGGG+AGG + chr7_1:68966664-68966683 Msa1033720:intron 50.0%
TGCATGTAACAGTGAGTGGG+TGG + chr7_1:68966882-68966901 Msa1033720:intron 50.0%
AGTGCAGAGGGAAGTTGACA+TGG - chr7_1:68967234-68967253 None:intergenic 50.0%
TCCCTCTGCACTAGCTCATT+TGG + chr7_1:68967242-68967261 Msa1033720:intron 50.0%
TCACTGGTACACCCAAATGG+AGG - chr7_1:68967283-68967302 None:intergenic 50.0%
AGACAGCCGATTGATGTCAC+TGG - chr7_1:68967299-68967318 None:intergenic 50.0%
! AAGCCTTATCCCACTCTAGG+TGG - chr7_1:68967859-68967878 None:intergenic 50.0%
! GCTAAGCCTTATCCCACTCT+AGG - chr7_1:68967862-68967881 None:intergenic 50.0%
TGGAACTATTGCTGCTGTGC+AGG - chr7_1:68968661-68968680 None:intergenic 50.0%
!! GAGATCTTTGGTAGTGCGCT+TGG + chr7_1:68969113-68969132 Msa1033720:CDS 50.0%
GCCTTGTATCATCAGTGTGC+GGG + chr7_1:68969203-68969222 Msa1033720:three_prime_UTR 50.0%
TCCCGCACACTGATGATACA+AGG - chr7_1:68969207-68969226 None:intergenic 50.0%
CGTGAGGAGAGGATTGGGAT+CGG - chr7_1:68965609-68965628 None:intergenic 55.0%
! GGCGATACCGATTGCGGAAA+AGG - chr7_1:68965719-68965738 None:intergenic 55.0%
! AGAGACGGCGATACCGATTG+CGG - chr7_1:68965725-68965744 None:intergenic 55.0%
! TTACCAAGCAGCGCCGAGAA+CGG - chr7_1:68965758-68965777 None:intergenic 55.0%
! GTGCTGCTATCAAGGCTCCA+AGG + chr7_1:68965893-68965912 Msa1033720:CDS 55.0%
CCACTGTGTCGTGTTAGAGG+CGG + chr7_1:68966631-68966650 Msa1033720:intron 55.0%
GTCGTGTTAGAGGCGGAATC+AGG + chr7_1:68966638-68966657 Msa1033720:intron 55.0%
ACAGTGAGTGGGTGGTTGTC+TGG + chr7_1:68966890-68966909 Msa1033720:intron 55.0%
CAGTGAGTGGGTGGTTGTCT+GGG + chr7_1:68966891-68966910 Msa1033720:intron 55.0%
TATCCCACTCTAGGTGGCGT+CGG - chr7_1:68967853-68967872 None:intergenic 55.0%
ACGCCACCTAGAGTGGGATA+AGG + chr7_1:68967853-68967872 Msa1033720:intron 55.0%
GGTAGTGCGCTTGGCCTATT+TGG + chr7_1:68969122-68969141 Msa1033720:CDS 55.0%
CGTGAGGAGAGGATTGGGAT+CGG - chr7_1:68965609-68965628 None:intergenic 55.0%
! GGCGATACCGATTGCGGAAA+AGG - chr7_1:68965719-68965738 None:intergenic 55.0%
! AGAGACGGCGATACCGATTG+CGG - chr7_1:68965725-68965744 None:intergenic 55.0%
! TTACCAAGCAGCGCCGAGAA+CGG - chr7_1:68965758-68965777 None:intergenic 55.0%
! GTGCTGCTATCAAGGCTCCA+AGG + chr7_1:68965893-68965912 Msa1033720:CDS 55.0%
CCACTGTGTCGTGTTAGAGG+CGG + chr7_1:68966631-68966650 Msa1033720:intron 55.0%
GTCGTGTTAGAGGCGGAATC+AGG + chr7_1:68966638-68966657 Msa1033720:intron 55.0%
ACAGTGAGTGGGTGGTTGTC+TGG + chr7_1:68966890-68966909 Msa1033720:intron 55.0%
CAGTGAGTGGGTGGTTGTCT+GGG + chr7_1:68966891-68966910 Msa1033720:intron 55.0%
TATCCCACTCTAGGTGGCGT+CGG - chr7_1:68967853-68967872 None:intergenic 55.0%
ACGCCACCTAGAGTGGGATA+AGG + chr7_1:68967853-68967872 Msa1033720:intron 55.0%
GGTAGTGCGCTTGGCCTATT+TGG + chr7_1:68969122-68969141 Msa1033720:CDS 55.0%
CCGCCTCTAACACGACACAG+TGG - chr7_1:68966634-68966653 None:intergenic 60.0%
TAGCCGACGCCACCTAGAGT+GGG + chr7_1:68967847-68967866 Msa1033720:intron 60.0%
CCGCCTCTAACACGACACAG+TGG - chr7_1:68966634-68966653 None:intergenic 60.0%
TAGCCGACGCCACCTAGAGT+GGG + chr7_1:68967847-68967866 Msa1033720:intron 60.0%
CTTGGGCTGCAGCACTCGTC+AGG + chr7_1:68965680-68965699 Msa1033720:CDS 65.0%
TCTCCGTTCTCGGCGCTGCT+TGG + chr7_1:68965752-68965771 Msa1033720:CDS 65.0%
GTAGCCGACGCCACCTAGAG+TGG + chr7_1:68967846-68967865 Msa1033720:intron 65.0%
CTTGGGCTGCAGCACTCGTC+AGG + chr7_1:68965680-68965699 Msa1033720:CDS 65.0%
TCTCCGTTCTCGGCGCTGCT+TGG + chr7_1:68965752-68965771 Msa1033720:CDS 65.0%
GTAGCCGACGCCACCTAGAG+TGG + chr7_1:68967846-68967865 Msa1033720:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 68965536 68969636 68965536 ID=Msa1033720;Name=Msa1033720
chr7_1 mRNA 68965536 68969636 68965536 ID=Msa1033720-mRNA-1;Parent=Msa1033720;Name=Msa1033720-mRNA-1;_AED=0.07;_eAED=0.07;_QI=107|1|1|1|1|1|4|437|182
chr7_1 exon 68965536 68965773 68965536 ID=Msa1033720-mRNA-1:exon:16172;Parent=Msa1033720-mRNA-1
chr7_1 exon 68965861 68965938 68965861 ID=Msa1033720-mRNA-1:exon:16173;Parent=Msa1033720-mRNA-1
chr7_1 exon 68968748 68968918 68968748 ID=Msa1033720-mRNA-1:exon:16174;Parent=Msa1033720-mRNA-1
chr7_1 exon 68969031 68969636 68969031 ID=Msa1033720-mRNA-1:exon:16175;Parent=Msa1033720-mRNA-1
chr7_1 five_prime_UTR 68965536 68965642 68965536 ID=Msa1033720-mRNA-1:five_prime_utr;Parent=Msa1033720-mRNA-1
chr7_1 CDS 68965643 68965773 68965643 ID=Msa1033720-mRNA-1:cds;Parent=Msa1033720-mRNA-1
chr7_1 CDS 68965861 68965938 68965861 ID=Msa1033720-mRNA-1:cds;Parent=Msa1033720-mRNA-1
chr7_1 CDS 68968748 68968918 68968748 ID=Msa1033720-mRNA-1:cds;Parent=Msa1033720-mRNA-1
chr7_1 CDS 68969031 68969199 68969031 ID=Msa1033720-mRNA-1:cds;Parent=Msa1033720-mRNA-1
chr7_1 three_prime_UTR 68969200 68969636 68969200 ID=Msa1033720-mRNA-1:three_prime_utr;Parent=Msa1033720-mRNA-1
Gene Sequence

>Msa1033720

ATGTCTAGCTCTGCAATCATTGCAGCGCATTCAAGCTCTTGGGCTGCAGCACTCGTCAGGATCTCTCCATACACCTTTTCCGCAATCGGTATCGCCGTCTCTATCGGTGTCTCCGTTCTCGGCGCTGCTTGGGGAATTTACATCACCGGTAGTAGTTTGATCGGTGCTGCTATCAAGGCTCCAAGGATCACTTCCAAAAATCTCATTAGTGTAATCTTCTGTGAAGCTGTTGCTATATATGGTGTTATTGTCGCTATTATCCTGCAGACAAAATTAGAAAGCGTTCCAAAATCAAGTATCTATGAACCAGAATCTCTTAGAGCTGGATATGCAATCTTTGCTTCTGGACTTATTGTGGGCTTCGCAAATCTTGTTTGTGGGTTGTGTGTAGGCATAATTGGAAGCAGTTGTGCATTGTCTGATGCTCAGAACTCCTCTCTCTTCGTGAAAATTCTTGTGATTGAGATCTTTGGTAGTGCGCTTGGCCTATTTGGAGTTATTGTTGGAATTATTATGTCAGCTCAAGCAACATGGCCCTCAAAAATTTAG

Protein sequence

>Msa1033720

MSSSAIIAAHSSSWAAALVRISPYTFSAIGIAVSIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPKSSIYEPESLRAGYAIFASGLIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQATWPSKI*