AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0836190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0836190 MtrunA17_Chr5g0402391 95.455 110 4 1 1 110 1 109 6.29e-70 207
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 72 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGTGTATAGATTTAATATT+TGG 0.143028 5_4:-9667596 Msa0836190:three_prime_UTR
GGGATGTGGTGGGTTATTTA+TGG 0.174091 5_4:-9667575 Msa0836190:three_prime_UTR
AATGTTATTGTTAACGTTCA+TGG 0.256129 5_4:+9667755 None:intergenic
CTGCAGACTGCGTTTGCGTT+TGG 0.306961 5_4:+9669259 None:intergenic
TCGTTGGTTCGTTCTTTGAA+TGG 0.337118 5_4:-9667530 Msa0836190:three_prime_UTR
GAGATTTCTTCTCAGGTTGT+AGG 0.348310 5_4:-9668800 Msa0836190:CDS
CTTCTCAGGTTGTAGGTGTC+AGG 0.365163 5_4:-9668793 Msa0836190:CDS
ATCAATGGAGATTTCTTCTC+AGG 0.379055 5_4:-9668807 Msa0836190:exon
CGTTGGTTCGTTCTTTGAAT+GGG 0.382563 5_4:-9667529 Msa0836190:three_prime_UTR
AGTGTATAGATTTAATATTT+GGG 0.387507 5_4:-9667595 Msa0836190:three_prime_UTR
GACACGTCGTTGTAACTAAC+GGG 0.389369 5_4:+9669162 None:intergenic
TTTGAAATTTGAATTTGCTT+TGG 0.389650 5_4:-9668293 Msa0836190:CDS
GGATCCATTGCTTGAACAAC+AGG 0.405756 5_4:+9668598 None:intergenic
TTCAAACGAGTTTGAGTCAA+TGG 0.407914 5_4:-9668036 Msa0836190:three_prime_UTR
TCGCTGAATTTCATCATCAA+TGG 0.423818 5_4:-9668822 Msa0836190:exon
GGAAAATTATGAAGGGATCA+TGG 0.430084 5_4:+9669351 None:intergenic
TTGCAAGTGGAAAATTATGA+AGG 0.432757 5_4:+9669343 None:intergenic
GCCGACGATTCTTCCTCAAC+TGG 0.440359 5_4:-9668672 Msa0836190:CDS
AGAAATTGAACGGTTAGGAT+TGG 0.454247 5_4:+9669030 None:intergenic
TCCCTTGTTTAATCAGATAA+CGG 0.456647 5_4:-9669137 Msa0836190:five_prime_UTR
GAAAATTATGAAGGGATCAT+GGG 0.462110 5_4:+9669352 None:intergenic
ATAGGAATGGGAAGAGGATG+AGG 0.467161 5_4:+9669217 None:intergenic
GATTCTTCCTCAACTGGAAA+AGG 0.467164 5_4:-9668666 Msa0836190:CDS
TGATAAGAAATTGAACGGTT+AGG 0.471693 5_4:+9669025 None:intergenic
AAAGATTAAGGTAGTTTCGT+TGG 0.472995 5_4:-9667546 Msa0836190:three_prime_UTR
ATTTAATATTTGGGATGTGG+TGG 0.487137 5_4:-9667586 Msa0836190:three_prime_UTR
CAGTCTCCGTTAATAGTGAC+GGG 0.487784 5_4:+9669085 None:intergenic
CGCTCAAGCTGCATTAGCCA+TGG 0.498701 5_4:-9668765 Msa0836190:CDS
GTTGGAATAGGAATGGGAAG+AGG 0.501706 5_4:+9669211 None:intergenic
CGCCGTTATCTGATTAAACA+AGG 0.505496 5_4:+9669135 None:intergenic
GATGAAATTCAGCGAAGTAC+GGG 0.509147 5_4:+9668830 None:intergenic
TCTCAAAACGGGGAATTTGA+CGG 0.510894 5_4:+9669112 None:intergenic
TTGATAACGCGCGTGGAGTA+CGG 0.517751 5_4:+9668983 None:intergenic
CACTCGTAGCGTCCTTCCAA+TGG 0.522068 5_4:+9667791 None:intergenic
CCAGTCTCCGTTAATAGTGA+CGG 0.523295 5_4:+9669084 None:intergenic
TAGATTTAATATTTGGGATG+TGG 0.523492 5_4:-9667589 Msa0836190:three_prime_UTR
TGATGAAATTCAGCGAAGTA+CGG 0.524846 5_4:+9668829 None:intergenic
CCGTTCAACTCGATGAAGAA+AGG 0.525470 5_4:-9668577 Msa0836190:CDS
TTTAATATTTGGGATGTGGT+GGG 0.527047 5_4:-9667585 Msa0836190:three_prime_UTR
CCTTTCTTCATCGAGTTGAA+CGG 0.528328 5_4:+9668577 None:intergenic
CCGTCACTATTAACGGAGAC+TGG 0.530529 5_4:-9669084 Msa0836190:five_prime_UTR
GTGAAGGATGTTCCATTGGA+AGG 0.536178 5_4:-9667803 Msa0836190:three_prime_UTR
TTTCTATTCACACCTCACTC+TGG 0.540409 5_4:+9668874 None:intergenic
TCCAGTTGAGGAAGAATCGT+CGG 0.551036 5_4:+9668671 None:intergenic
TCTTCAAGCTCAAATTCCGT+TGG 0.553314 5_4:+9667972 None:intergenic
GCGTCCTGTTGTTCAAGCAA+TGG 0.555643 5_4:-9668602 Msa0836190:CDS
TGCAAGTGGAAAATTATGAA+GGG 0.556850 5_4:+9669344 None:intergenic
TATTGTGAAGGATGTTCCAT+TGG 0.578054 5_4:-9667807 Msa0836190:three_prime_UTR
TCTTCCTCAACTGGAAAAGG+AGG 0.580715 5_4:-9668663 Msa0836190:CDS
TTGGAATTTACATACAACAA+AGG 0.586695 5_4:+9669308 None:intergenic
GATCAAATCGTTAGATCTAG+AGG 0.589450 5_4:-9668555 Msa0836190:intron
TGACACGTCGTTGTAACTAA+CGG 0.593876 5_4:+9669161 None:intergenic
GAAACGCGATTATTTGCAAG+TGG 0.593999 5_4:+9669330 None:intergenic
CATTGGAAGGACGCTACGAG+TGG 0.598974 5_4:-9667790 Msa0836190:three_prime_UTR
TTCTTCATCGGAGATATCAC+CGG 0.604193 5_4:+9668631 None:intergenic
TGAAGTTGTAGCTTCATCCA+TGG 0.608270 5_4:+9668748 None:intergenic
ATTGCTTGAACAACAGGACG+CGG 0.618562 5_4:+9668604 None:intergenic
ACAGTGAAGAAGAATTTCAG+AGG 0.627175 5_4:-9668318 Msa0836190:CDS
GGACGCGGGAAATTCTTCAT+CGG 0.641501 5_4:+9668619 None:intergenic
GAGAGTGTTGATAACGCGCG+TGG 0.646351 5_4:+9668976 None:intergenic
TGTGATGATAAGAAATTGAA+CGG 0.647986 5_4:+9669020 None:intergenic
TTGCTTGAACAACAGGACGC+GGG 0.649814 5_4:+9668605 None:intergenic
TTCATCGGAGATATCACCGG+AGG 0.654993 5_4:+9668634 None:intergenic
ATTGGAAGGACGCTACGAGT+GGG 0.655621 5_4:-9667789 Msa0836190:three_prime_UTR
ACACCTGAAAAGCCAGAGTG+AGG 0.658166 5_4:-9668886 Msa0836190:five_prime_UTR
GTATAATTATGATATTGTGA+AGG 0.659384 5_4:-9667819 Msa0836190:three_prime_UTR
AAAATTATGAAGGGATCATG+GGG 0.661542 5_4:+9669353 None:intergenic
GTCTCCGTTAATAGTGACGG+GGG 0.678897 5_4:+9669087 None:intergenic
ACACGTCGTTGTAACTAACG+GGG 0.680569 5_4:+9669163 None:intergenic
GCCGTTATCTGATTAAACAA+GGG 0.689324 5_4:+9669136 None:intergenic
AGTCTCCGTTAATAGTGACG+GGG 0.697219 5_4:+9669086 None:intergenic
CACGTCGTTGTAACTAACGG+GGG 0.714208 5_4:+9669164 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCTTACTATTTTAGTTT+AGG - chr5_4:9669171-9669190 Msa0836190:five_prime_UTR 15.0%
!! TAGTGTATAGATTTAATATT+TGG - chr5_4:9669254-9669273 Msa0836190:five_prime_UTR 15.0%
!! AGTGTATAGATTTAATATTT+GGG - chr5_4:9669255-9669274 Msa0836190:five_prime_UTR 15.0%
!!! TTTTCTTACTATTTTAGTTT+AGG - chr5_4:9669171-9669190 Msa0836190:five_prime_UTR 15.0%
!! TAGTGTATAGATTTAATATT+TGG - chr5_4:9669254-9669273 Msa0836190:five_prime_UTR 15.0%
!! AGTGTATAGATTTAATATTT+GGG - chr5_4:9669255-9669274 Msa0836190:five_prime_UTR 15.0%
!!! TTTGAAATTTGAATTTGCTT+TGG - chr5_4:9668557-9668576 Msa0836190:CDS 20.0%
!!! ATATTTTTTGGAGAAGAAAT+CGG + chr5_4:9668857-9668876 None:intergenic 20.0%
!! GTATAATTATGATATTGTGA+AGG - chr5_4:9669031-9669050 Msa0836190:five_prime_UTR 20.0%
!! TTATGGAAGAAAAAAGATTA+AGG - chr5_4:9669292-9669311 Msa0836190:five_prime_UTR 20.0%
!!! TTTGAAATTTGAATTTGCTT+TGG - chr5_4:9668557-9668576 Msa0836190:CDS 20.0%
!!! ATATTTTTTGGAGAAGAAAT+CGG + chr5_4:9668857-9668876 None:intergenic 20.0%
!! GTATAATTATGATATTGTGA+AGG - chr5_4:9669031-9669050 Msa0836190:five_prime_UTR 20.0%
!! TTATGGAAGAAAAAAGATTA+AGG - chr5_4:9669292-9669311 Msa0836190:five_prime_UTR 20.0%
! TTGGAATTTACATACAACAA+AGG + chr5_4:9667545-9667564 None:intergenic 25.0%
! TGTGATGATAAGAAATTGAA+CGG + chr5_4:9667833-9667852 None:intergenic 25.0%
!!! TTTCTTCTCTTTGAAGTTTT+TGG + chr5_4:9668131-9668150 None:intergenic 25.0%
! CTGAAATGAACAATTTAATG+CGG - chr5_4:9668347-9668366 Msa0836190:CDS 25.0%
! CATTAAACGTTTCTATTTAC+AGG - chr5_4:9668473-9668492 Msa0836190:intron 25.0%
!!! TCAGTTATAGTTTTTGAGTT+AGG - chr5_4:9668590-9668609 Msa0836190:CDS 25.0%
!! ATTTTGAACGGAAAAAATTG+TGG + chr5_4:9668663-9668682 None:intergenic 25.0%
! AATGTTATTGTTAACGTTCA+TGG + chr5_4:9669098-9669117 None:intergenic 25.0%
!! TAGATTTAATATTTGGGATG+TGG - chr5_4:9669261-9669280 Msa0836190:five_prime_UTR 25.0%
! AATCATCATCATCATGTATT+TGG + chr5_4:9667464-9667483 None:intergenic 25.0%
! TTGGAATTTACATACAACAA+AGG + chr5_4:9667545-9667564 None:intergenic 25.0%
! TGTGATGATAAGAAATTGAA+CGG + chr5_4:9667833-9667852 None:intergenic 25.0%
!!! TTTCTTCTCTTTGAAGTTTT+TGG + chr5_4:9668131-9668150 None:intergenic 25.0%
! CTGAAATGAACAATTTAATG+CGG - chr5_4:9668347-9668366 Msa0836190:CDS 25.0%
! CATTAAACGTTTCTATTTAC+AGG - chr5_4:9668473-9668492 Msa0836190:intron 25.0%
!!! TCAGTTATAGTTTTTGAGTT+AGG - chr5_4:9668590-9668609 Msa0836190:CDS 25.0%
!! ATTTTGAACGGAAAAAATTG+TGG + chr5_4:9668663-9668682 None:intergenic 25.0%
! AATGTTATTGTTAACGTTCA+TGG + chr5_4:9669098-9669117 None:intergenic 25.0%
!! TAGATTTAATATTTGGGATG+TGG - chr5_4:9669261-9669280 Msa0836190:five_prime_UTR 25.0%
AAAATTATGAAGGGATCATG+GGG + chr5_4:9667500-9667519 None:intergenic 30.0%
GAAAATTATGAAGGGATCAT+GGG + chr5_4:9667501-9667520 None:intergenic 30.0%
TGCAAGTGGAAAATTATGAA+GGG + chr5_4:9667509-9667528 None:intergenic 30.0%
TTGCAAGTGGAAAATTATGA+AGG + chr5_4:9667510-9667529 None:intergenic 30.0%
!! TGTTTTGTTGGAATAGGAAT+GGG + chr5_4:9667648-9667667 None:intergenic 30.0%
! TCCCTTGTTTAATCAGATAA+CGG - chr5_4:9667713-9667732 Msa0836190:three_prime_UTR 30.0%
TGATAAGAAATTGAACGGTT+AGG + chr5_4:9667828-9667847 None:intergenic 30.0%
ATAGAAACGTTTAATGCGTT+AGG + chr5_4:9668469-9668488 None:intergenic 30.0%
TAAACGTTTCTATTTACAGG+TGG - chr5_4:9668476-9668495 Msa0836190:intron 30.0%
! TCAGTTACTACGATTTTGAA+CGG + chr5_4:9668675-9668694 None:intergenic 30.0%
! ACAGAATATTTTGTGAGTGT+AGG - chr5_4:9668777-9668796 Msa0836190:CDS 30.0%
TTCTCCAAAAAATATGCCAA+CGG - chr5_4:9668862-9668881 Msa0836190:five_prime_UTR 30.0%
!!! AATTCCGTTGGCATATTTTT+TGG + chr5_4:9668869-9668888 None:intergenic 30.0%
! TTCTTGAAGAATGATTTTGC+AGG - chr5_4:9669009-9669028 Msa0836190:five_prime_UTR 30.0%
AAGAAAAAATGTCAGCAAAG+TGG + chr5_4:9669158-9669177 None:intergenic 30.0%
! ATTTAATATTTGGGATGTGG+TGG - chr5_4:9669264-9669283 Msa0836190:five_prime_UTR 30.0%
! TTTAATATTTGGGATGTGGT+GGG - chr5_4:9669265-9669284 Msa0836190:five_prime_UTR 30.0%
AAAGATTAAGGTAGTTTCGT+TGG - chr5_4:9669304-9669323 Msa0836190:five_prime_UTR 30.0%
AAAATTATGAAGGGATCATG+GGG + chr5_4:9667500-9667519 None:intergenic 30.0%
GAAAATTATGAAGGGATCAT+GGG + chr5_4:9667501-9667520 None:intergenic 30.0%
TGCAAGTGGAAAATTATGAA+GGG + chr5_4:9667509-9667528 None:intergenic 30.0%
TTGCAAGTGGAAAATTATGA+AGG + chr5_4:9667510-9667529 None:intergenic 30.0%
!! TGTTTTGTTGGAATAGGAAT+GGG + chr5_4:9667648-9667667 None:intergenic 30.0%
! TCCCTTGTTTAATCAGATAA+CGG - chr5_4:9667713-9667732 Msa0836190:three_prime_UTR 30.0%
TGATAAGAAATTGAACGGTT+AGG + chr5_4:9667828-9667847 None:intergenic 30.0%
ATAGAAACGTTTAATGCGTT+AGG + chr5_4:9668469-9668488 None:intergenic 30.0%
TAAACGTTTCTATTTACAGG+TGG - chr5_4:9668476-9668495 Msa0836190:intron 30.0%
! TCAGTTACTACGATTTTGAA+CGG + chr5_4:9668675-9668694 None:intergenic 30.0%
! ACAGAATATTTTGTGAGTGT+AGG - chr5_4:9668777-9668796 Msa0836190:CDS 30.0%
TTCTCCAAAAAATATGCCAA+CGG - chr5_4:9668862-9668881 Msa0836190:five_prime_UTR 30.0%
!!! AATTCCGTTGGCATATTTTT+TGG + chr5_4:9668869-9668888 None:intergenic 30.0%
! TTCTTGAAGAATGATTTTGC+AGG - chr5_4:9669009-9669028 Msa0836190:five_prime_UTR 30.0%
AAGAAAAAATGTCAGCAAAG+TGG + chr5_4:9669158-9669177 None:intergenic 30.0%
! ATTTAATATTTGGGATGTGG+TGG - chr5_4:9669264-9669283 Msa0836190:five_prime_UTR 30.0%
! TTTAATATTTGGGATGTGGT+GGG - chr5_4:9669265-9669284 Msa0836190:five_prime_UTR 30.0%
AAAGATTAAGGTAGTTTCGT+TGG - chr5_4:9669304-9669323 Msa0836190:five_prime_UTR 30.0%
GGAAAATTATGAAGGGATCA+TGG + chr5_4:9667502-9667521 None:intergenic 35.0%
!! TTTTGAGTGAAAAGTGCGTT+TGG + chr5_4:9667564-9667583 None:intergenic 35.0%
!! GTGTTTTGTTGGAATAGGAA+TGG + chr5_4:9667649-9667668 None:intergenic 35.0%
!! AAACGGTGTTTTGTTGGAAT+AGG + chr5_4:9667654-9667673 None:intergenic 35.0%
GCCGTTATCTGATTAAACAA+GGG + chr5_4:9667717-9667736 None:intergenic 35.0%
AGAAATTGAACGGTTAGGAT+TGG + chr5_4:9667823-9667842 None:intergenic 35.0%
!!! TGCTTTTTCTGCGATTTTTC+TGG + chr5_4:9667939-9667958 None:intergenic 35.0%
TGATGAAATTCAGCGAAGTA+CGG + chr5_4:9668024-9668043 None:intergenic 35.0%
TCGCTGAATTTCATCATCAA+TGG - chr5_4:9668028-9668047 Msa0836190:three_prime_UTR 35.0%
ATCAATGGAGATTTCTTCTC+AGG - chr5_4:9668043-9668062 Msa0836190:three_prime_UTR 35.0%
GATCAAATCGTTAGATCTAG+AGG - chr5_4:9668295-9668314 Msa0836190:CDS 35.0%
ACAGTGAAGAAGAATTTCAG+AGG - chr5_4:9668532-9668551 Msa0836190:intron 35.0%
TTCAAACGAGTTTGAGTCAA+TGG - chr5_4:9668814-9668833 Msa0836190:exon 35.0%
!! TTTTTGGAGAAGAAATCGGA+CGG + chr5_4:9668853-9668872 None:intergenic 35.0%
TATTGTGAAGGATGTTCCAT+TGG - chr5_4:9669043-9669062 Msa0836190:five_prime_UTR 35.0%
GGAAAATTATGAAGGGATCA+TGG + chr5_4:9667502-9667521 None:intergenic 35.0%
!! TTTTGAGTGAAAAGTGCGTT+TGG + chr5_4:9667564-9667583 None:intergenic 35.0%
!! GTGTTTTGTTGGAATAGGAA+TGG + chr5_4:9667649-9667668 None:intergenic 35.0%
!! AAACGGTGTTTTGTTGGAAT+AGG + chr5_4:9667654-9667673 None:intergenic 35.0%
GCCGTTATCTGATTAAACAA+GGG + chr5_4:9667717-9667736 None:intergenic 35.0%
AGAAATTGAACGGTTAGGAT+TGG + chr5_4:9667823-9667842 None:intergenic 35.0%
!!! TGCTTTTTCTGCGATTTTTC+TGG + chr5_4:9667939-9667958 None:intergenic 35.0%
TGATGAAATTCAGCGAAGTA+CGG + chr5_4:9668024-9668043 None:intergenic 35.0%
TCGCTGAATTTCATCATCAA+TGG - chr5_4:9668028-9668047 Msa0836190:three_prime_UTR 35.0%
ATCAATGGAGATTTCTTCTC+AGG - chr5_4:9668043-9668062 Msa0836190:three_prime_UTR 35.0%
GATCAAATCGTTAGATCTAG+AGG - chr5_4:9668295-9668314 Msa0836190:CDS 35.0%
ACAGTGAAGAAGAATTTCAG+AGG - chr5_4:9668532-9668551 Msa0836190:intron 35.0%
TTCAAACGAGTTTGAGTCAA+TGG - chr5_4:9668814-9668833 Msa0836190:exon 35.0%
!! TTTTTGGAGAAGAAATCGGA+CGG + chr5_4:9668853-9668872 None:intergenic 35.0%
TATTGTGAAGGATGTTCCAT+TGG - chr5_4:9669043-9669062 Msa0836190:five_prime_UTR 35.0%
GAAACGCGATTATTTGCAAG+TGG + chr5_4:9667523-9667542 None:intergenic 40.0%
TAACTAACGGGGGATGAAAA+CGG + chr5_4:9667679-9667698 None:intergenic 40.0%
TGACACGTCGTTGTAACTAA+CGG + chr5_4:9667692-9667711 None:intergenic 40.0%
CGCCGTTATCTGATTAAACA+AGG + chr5_4:9667718-9667737 None:intergenic 40.0%
TCTCAAAACGGGGAATTTGA+CGG + chr5_4:9667741-9667760 None:intergenic 40.0%
!!! GGATGATTGCTTTTTCGTAG+TGG + chr5_4:9667802-9667821 None:intergenic 40.0%
TTTCTATTCACACCTCACTC+TGG + chr5_4:9667979-9667998 None:intergenic 40.0%
GATGAAATTCAGCGAAGTAC+GGG + chr5_4:9668023-9668042 None:intergenic 40.0%
! GAGATTTCTTCTCAGGTTGT+AGG - chr5_4:9668050-9668069 Msa0836190:three_prime_UTR 40.0%
TGAAGTTGTAGCTTCATCCA+TGG + chr5_4:9668105-9668124 None:intergenic 40.0%
GATTCTTCCTCAACTGGAAA+AGG - chr5_4:9668184-9668203 Msa0836190:three_prime_UTR 40.0%
! TTTTCCTCCTTTTCCAGTTG+AGG + chr5_4:9668194-9668213 None:intergenic 40.0%
GAAAAGGAGGAAAAATCCTC+CGG - chr5_4:9668200-9668219 Msa0836190:three_prime_UTR 40.0%
TTCTTCATCGGAGATATCAC+CGG + chr5_4:9668222-9668241 None:intergenic 40.0%
!! CCTTTCTTCATCGAGTTGAA+CGG + chr5_4:9668276-9668295 None:intergenic 40.0%
TCTTCAAGCTCAAATTCCGT+TGG + chr5_4:9668881-9668900 None:intergenic 40.0%
!! TCGTTGGTTCGTTCTTTGAA+TGG - chr5_4:9669320-9669339 Msa0836190:five_prime_UTR 40.0%
!! CGTTGGTTCGTTCTTTGAAT+GGG - chr5_4:9669321-9669340 Msa0836190:five_prime_UTR 40.0%
GAAACGCGATTATTTGCAAG+TGG + chr5_4:9667523-9667542 None:intergenic 40.0%
TAACTAACGGGGGATGAAAA+CGG + chr5_4:9667679-9667698 None:intergenic 40.0%
TGACACGTCGTTGTAACTAA+CGG + chr5_4:9667692-9667711 None:intergenic 40.0%
CGCCGTTATCTGATTAAACA+AGG + chr5_4:9667718-9667737 None:intergenic 40.0%
TCTCAAAACGGGGAATTTGA+CGG + chr5_4:9667741-9667760 None:intergenic 40.0%
!!! GGATGATTGCTTTTTCGTAG+TGG + chr5_4:9667802-9667821 None:intergenic 40.0%
TTTCTATTCACACCTCACTC+TGG + chr5_4:9667979-9667998 None:intergenic 40.0%
GATGAAATTCAGCGAAGTAC+GGG + chr5_4:9668023-9668042 None:intergenic 40.0%
! GAGATTTCTTCTCAGGTTGT+AGG - chr5_4:9668050-9668069 Msa0836190:three_prime_UTR 40.0%
TGAAGTTGTAGCTTCATCCA+TGG + chr5_4:9668105-9668124 None:intergenic 40.0%
GATTCTTCCTCAACTGGAAA+AGG - chr5_4:9668184-9668203 Msa0836190:three_prime_UTR 40.0%
! TTTTCCTCCTTTTCCAGTTG+AGG + chr5_4:9668194-9668213 None:intergenic 40.0%
GAAAAGGAGGAAAAATCCTC+CGG - chr5_4:9668200-9668219 Msa0836190:three_prime_UTR 40.0%
TTCTTCATCGGAGATATCAC+CGG + chr5_4:9668222-9668241 None:intergenic 40.0%
!! CCTTTCTTCATCGAGTTGAA+CGG + chr5_4:9668276-9668295 None:intergenic 40.0%
TCTTCAAGCTCAAATTCCGT+TGG + chr5_4:9668881-9668900 None:intergenic 40.0%
!! TCGTTGGTTCGTTCTTTGAA+TGG - chr5_4:9669320-9669339 Msa0836190:five_prime_UTR 40.0%
!! CGTTGGTTCGTTCTTTGAAT+GGG - chr5_4:9669321-9669340 Msa0836190:five_prime_UTR 40.0%
ATAGGAATGGGAAGAGGATG+AGG + chr5_4:9667636-9667655 None:intergenic 45.0%
GTTGGAATAGGAATGGGAAG+AGG + chr5_4:9667642-9667661 None:intergenic 45.0%
! ACGGAGAAACGGTGTTTTGT+TGG + chr5_4:9667660-9667679 None:intergenic 45.0%
ACACGTCGTTGTAACTAACG+GGG + chr5_4:9667690-9667709 None:intergenic 45.0%
GACACGTCGTTGTAACTAAC+GGG + chr5_4:9667691-9667710 None:intergenic 45.0%
GATTCCCCCGTCACTATTAA+CGG - chr5_4:9667759-9667778 Msa0836190:three_prime_UTR 45.0%
AGTCTCCGTTAATAGTGACG+GGG + chr5_4:9667767-9667786 None:intergenic 45.0%
CAGTCTCCGTTAATAGTGAC+GGG + chr5_4:9667768-9667787 None:intergenic 45.0%
CCAGTCTCCGTTAATAGTGA+CGG + chr5_4:9667769-9667788 None:intergenic 45.0%
!! CTTTTTCGTAGTGGTGTGTG+TGG + chr5_4:9667793-9667812 None:intergenic 45.0%
!! TCGTCGGCGTTGAGAATTTT+CGG + chr5_4:9668166-9668185 None:intergenic 45.0%
TCCAGTTGAGGAAGAATCGT+CGG + chr5_4:9668182-9668201 None:intergenic 45.0%
TCTTCCTCAACTGGAAAAGG+AGG - chr5_4:9668187-9668206 Msa0836190:three_prime_UTR 45.0%
ATTGCTTGAACAACAGGACG+CGG + chr5_4:9668249-9668268 None:intergenic 45.0%
GGATCCATTGCTTGAACAAC+AGG + chr5_4:9668255-9668274 None:intergenic 45.0%
CCGTTCAACTCGATGAAGAA+AGG - chr5_4:9668273-9668292 Msa0836190:CDS 45.0%
GTGAAGGATGTTCCATTGGA+AGG - chr5_4:9669047-9669066 Msa0836190:five_prime_UTR 45.0%
!! GGGATGTGGTGGGTTATTTA+TGG - chr5_4:9669275-9669294 Msa0836190:five_prime_UTR 45.0%
ATAGGAATGGGAAGAGGATG+AGG + chr5_4:9667636-9667655 None:intergenic 45.0%
GTTGGAATAGGAATGGGAAG+AGG + chr5_4:9667642-9667661 None:intergenic 45.0%
! ACGGAGAAACGGTGTTTTGT+TGG + chr5_4:9667660-9667679 None:intergenic 45.0%
ACACGTCGTTGTAACTAACG+GGG + chr5_4:9667690-9667709 None:intergenic 45.0%
GACACGTCGTTGTAACTAAC+GGG + chr5_4:9667691-9667710 None:intergenic 45.0%
GATTCCCCCGTCACTATTAA+CGG - chr5_4:9667759-9667778 Msa0836190:three_prime_UTR 45.0%
AGTCTCCGTTAATAGTGACG+GGG + chr5_4:9667767-9667786 None:intergenic 45.0%
CAGTCTCCGTTAATAGTGAC+GGG + chr5_4:9667768-9667787 None:intergenic 45.0%
CCAGTCTCCGTTAATAGTGA+CGG + chr5_4:9667769-9667788 None:intergenic 45.0%
!! CTTTTTCGTAGTGGTGTGTG+TGG + chr5_4:9667793-9667812 None:intergenic 45.0%
!! TCGTCGGCGTTGAGAATTTT+CGG + chr5_4:9668166-9668185 None:intergenic 45.0%
TCCAGTTGAGGAAGAATCGT+CGG + chr5_4:9668182-9668201 None:intergenic 45.0%
TCTTCCTCAACTGGAAAAGG+AGG - chr5_4:9668187-9668206 Msa0836190:three_prime_UTR 45.0%
ATTGCTTGAACAACAGGACG+CGG + chr5_4:9668249-9668268 None:intergenic 45.0%
GGATCCATTGCTTGAACAAC+AGG + chr5_4:9668255-9668274 None:intergenic 45.0%
CCGTTCAACTCGATGAAGAA+AGG - chr5_4:9668273-9668292 Msa0836190:CDS 45.0%
GTGAAGGATGTTCCATTGGA+AGG - chr5_4:9669047-9669066 Msa0836190:five_prime_UTR 45.0%
!! GGGATGTGGTGGGTTATTTA+TGG - chr5_4:9669275-9669294 Msa0836190:five_prime_UTR 45.0%
GGGGGATGAAAACGGAGAAA+CGG + chr5_4:9667671-9667690 None:intergenic 50.0%
CACGTCGTTGTAACTAACGG+GGG + chr5_4:9667689-9667708 None:intergenic 50.0%
TGACGGGGGAATCTCAAAAC+GGG + chr5_4:9667752-9667771 None:intergenic 50.0%
! GTGACGGGGGAATCTCAAAA+CGG + chr5_4:9667753-9667772 None:intergenic 50.0%
GTCTCCGTTAATAGTGACGG+GGG + chr5_4:9667766-9667785 None:intergenic 50.0%
CCGTCACTATTAACGGAGAC+TGG - chr5_4:9667766-9667785 Msa0836190:three_prime_UTR 50.0%
!! TTGATAACGCGCGTGGAGTA+CGG + chr5_4:9667870-9667889 None:intergenic 50.0%
ACACCTGAAAAGCCAGAGTG+AGG - chr5_4:9667964-9667983 Msa0836190:three_prime_UTR 50.0%
!!! ACACCTCACTCTGGCTTTTC+AGG + chr5_4:9667970-9667989 None:intergenic 50.0%
! CTTCTCAGGTTGTAGGTGTC+AGG - chr5_4:9668057-9668076 Msa0836190:three_prime_UTR 50.0%
TTCATCGGAGATATCACCGG+AGG + chr5_4:9668219-9668238 None:intergenic 50.0%
GGACGCGGGAAATTCTTCAT+CGG + chr5_4:9668234-9668253 None:intergenic 50.0%
TTGCTTGAACAACAGGACGC+GGG + chr5_4:9668248-9668267 None:intergenic 50.0%
GCGTCCTGTTGTTCAAGCAA+TGG - chr5_4:9668248-9668267 Msa0836190:three_prime_UTR 50.0%
ATTGGAAGGACGCTACGAGT+GGG - chr5_4:9669061-9669080 Msa0836190:five_prime_UTR 50.0%
GGGGGATGAAAACGGAGAAA+CGG + chr5_4:9667671-9667690 None:intergenic 50.0%
CACGTCGTTGTAACTAACGG+GGG + chr5_4:9667689-9667708 None:intergenic 50.0%
TGACGGGGGAATCTCAAAAC+GGG + chr5_4:9667752-9667771 None:intergenic 50.0%
! GTGACGGGGGAATCTCAAAA+CGG + chr5_4:9667753-9667772 None:intergenic 50.0%
GTCTCCGTTAATAGTGACGG+GGG + chr5_4:9667766-9667785 None:intergenic 50.0%
CCGTCACTATTAACGGAGAC+TGG - chr5_4:9667766-9667785 Msa0836190:three_prime_UTR 50.0%
!! TTGATAACGCGCGTGGAGTA+CGG + chr5_4:9667870-9667889 None:intergenic 50.0%
ACACCTGAAAAGCCAGAGTG+AGG - chr5_4:9667964-9667983 Msa0836190:three_prime_UTR 50.0%
!!! ACACCTCACTCTGGCTTTTC+AGG + chr5_4:9667970-9667989 None:intergenic 50.0%
! CTTCTCAGGTTGTAGGTGTC+AGG - chr5_4:9668057-9668076 Msa0836190:three_prime_UTR 50.0%
TTCATCGGAGATATCACCGG+AGG + chr5_4:9668219-9668238 None:intergenic 50.0%
GGACGCGGGAAATTCTTCAT+CGG + chr5_4:9668234-9668253 None:intergenic 50.0%
TTGCTTGAACAACAGGACGC+GGG + chr5_4:9668248-9668267 None:intergenic 50.0%
GCGTCCTGTTGTTCAAGCAA+TGG - chr5_4:9668248-9668267 Msa0836190:three_prime_UTR 50.0%
ATTGGAAGGACGCTACGAGT+GGG - chr5_4:9669061-9669080 Msa0836190:five_prime_UTR 50.0%
CTGCAGACTGCGTTTGCGTT+TGG + chr5_4:9667594-9667613 None:intergenic 55.0%
GACGGGGGAATCTCAAAACG+GGG + chr5_4:9667751-9667770 None:intergenic 55.0%
!! GAGAGTGTTGATAACGCGCG+TGG + chr5_4:9667877-9667896 None:intergenic 55.0%
CGCTCAAGCTGCATTAGCCA+TGG - chr5_4:9668085-9668104 Msa0836190:three_prime_UTR 55.0%
GCCGACGATTCTTCCTCAAC+TGG - chr5_4:9668178-9668197 Msa0836190:three_prime_UTR 55.0%
CACTCGTAGCGTCCTTCCAA+TGG + chr5_4:9669062-9669081 None:intergenic 55.0%
CATTGGAAGGACGCTACGAG+TGG - chr5_4:9669060-9669079 Msa0836190:five_prime_UTR 55.0%
CTGCAGACTGCGTTTGCGTT+TGG + chr5_4:9667594-9667613 None:intergenic 55.0%
GACGGGGGAATCTCAAAACG+GGG + chr5_4:9667751-9667770 None:intergenic 55.0%
!! GAGAGTGTTGATAACGCGCG+TGG + chr5_4:9667877-9667896 None:intergenic 55.0%
CGCTCAAGCTGCATTAGCCA+TGG - chr5_4:9668085-9668104 Msa0836190:three_prime_UTR 55.0%
GCCGACGATTCTTCCTCAAC+TGG - chr5_4:9668178-9668197 Msa0836190:three_prime_UTR 55.0%
CACTCGTAGCGTCCTTCCAA+TGG + chr5_4:9669062-9669081 None:intergenic 55.0%
CATTGGAAGGACGCTACGAG+TGG - chr5_4:9669060-9669079 Msa0836190:five_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 9667462 9669410 9667462 ID=Msa0836190;Name=Msa0836190
chr5_4 mRNA 9667462 9669410 9667462 ID=Msa0836190-mRNA-1;Parent=Msa0836190;Name=Msa0836190-mRNA-1;_AED=0.04;_eAED=0.04;_QI=585|1|1|1|1|0.66|3|729|124
chr5_4 exon 9667462 9667841 9667462 ID=Msa0836190-mRNA-1:exon:4274;Parent=Msa0836190-mRNA-1
chr5_4 exon 9667924 9668377 9667924 ID=Msa0836190-mRNA-1:exon:4273;Parent=Msa0836190-mRNA-1
chr5_4 exon 9668556 9669410 9668556 ID=Msa0836190-mRNA-1:exon:4272;Parent=Msa0836190-mRNA-1
chr5_4 five_prime_UTR 9668826 9669410 9668826 ID=Msa0836190-mRNA-1:five_prime_utr;Parent=Msa0836190-mRNA-1
chr5_4 CDS 9668556 9668825 9668556 ID=Msa0836190-mRNA-1:cds;Parent=Msa0836190-mRNA-1
chr5_4 CDS 9668273 9668377 9668273 ID=Msa0836190-mRNA-1:cds;Parent=Msa0836190-mRNA-1
chr5_4 three_prime_UTR 9667924 9668272 9667924 ID=Msa0836190-mRNA-1:three_prime_utr;Parent=Msa0836190-mRNA-1
chr5_4 three_prime_UTR 9667462 9667841 9667462 ID=Msa0836190-mRNA-1:three_prime_utr;Parent=Msa0836190-mRNA-1
Gene Sequence

>Msa0836190

ATGGAGATTTCTTCTCAGGTTGTAGGTGTCAGGACTCGCGCTCAAGCTGCATTAGCCATGGATGAAGCTACAACTTCATCTCCAAAAACTTCAAAGAGAAGAAAAATCAACAACAACCGAAAATTCTCAACGCCGACGATTCTTCCTCAACTGGAAAAGGAGGAAAAATCCTCCGGTGATATCTCCGATGAAGAATTTCCCGCGTCCTGTTGTTCAAGCAATGGATCCGTTCAACTCGATGAAGAAAGGATCAAATCGTTAGATCTAGAGGTGGAGAGCGCGCAAGTTGAAACGTCGACGTGCAATTACAGTGAAGAAGAATTTCAGAGGTTTTTGAAATTTGAATTTGCTTTGGATTCTTTAAGTCAGTTATAG

Protein sequence

>Msa0836190

MEISSQVVGVRTRAQAALAMDEATTSSPKTSKRRKINNNRKFSTPTILPQLEKEEKSSGDISDEEFPASCCSSNGSVQLDEERIKSLDLEVESAQVETSTCNYSEEEFQRFLKFEFALDSLSQL*