AlfalfaGEDB | Msa0099510

M. sativa cultivar zhongmu-4 / Msa0099510

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0099510	-0.852173	5.491927e-61	-8.615850e-47
Msa0006880	Msa0099510	0.820296	7.394833e-53	-8.615850e-47
Msa0027580	Msa0099510	0.805948	1.042959e-49	-8.615850e-47
Msa0032610	Msa0099510	0.801890	7.271880e-49	-8.615850e-47
Msa0036370	Msa0099510	0.819424	1.170128e-52	-8.615850e-47
Msa0043730	Msa0099510	0.808840	2.541133e-50	-8.615850e-47
Msa0048000	Msa0099510	0.815607	8.475403e-52	-8.615850e-47
Msa0050730	Msa0099510	0.801979	6.973346e-49	-8.615850e-47
Msa0050760	Msa0099510	0.800252	1.572224e-48	-8.615850e-47
Msa0055150	Msa0099510	0.829461	5.081079e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Find 52 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAAGGAAGCAATATGTG+TGG	0.684740	1_3:+5706055	Msa0099510:CDS
AAATAAGTGATGTGTCATGT+GGG	0.637170	1_3:-5706454	None:intergenic
AAATAAGTGGGAACAAGAAT+GGG	0.494120	1_3:+5706340	Msa0099510:CDS
AACAGTGAAGAACCTGAAAA+TGG	0.369679	1_3:-5703364	None:intergenic
AAGTGGGAACAAGAATGGGA+TGG	0.602710	1_3:+5706344	Msa0099510:CDS
AATAAGTGATGTGTCATGTG+GGG	0.739169	1_3:-5706453	None:intergenic
ACAATGGTAGTTCCCTAACA+AGG	0.650300	1_3:+5706416	Msa0099510:three_prime_UTR
ACATTAATCAGAATTTGCTA+AGG	0.598746	1_3:+5705582	Msa0099510:intron
AGTGGGAACAAGAATGGGAT+GGG	0.603182	1_3:+5706345	Msa0099510:CDS
AGTTATTAGAGCATCCACAA+TGG	0.718789	1_3:+5706400	Msa0099510:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCGAGATATATATACACTCT+TGG	+	chr1_3:5703222-5703241	Msa0099510:CDS	30.0%
AGAAAAACCTGAGTGAATAT+CGG	-	chr1_3:5703251-5703270	None:intergenic	30.0%
ATCACAACTAAGATTGAGAA+AGG	-	chr1_3:5703495-5703514	None:intergenic	30.0%
TAATTAAAAAAGGCAGTGTC+GGG	-	chr1_3:5703622-5703641	None:intergenic	30.0%
CTAATTAAAAAAGGCAGTGT+CGG	-	chr1_3:5703623-5703642	None:intergenic	30.0%
CAATTTGGTACACTGAAAAA+AGG	-	chr1_3:5704405-5704424	None:intergenic	30.0%
GTATATGAGACCTTAAAATC+TGG	+	chr1_3:5704618-5704637	Msa0099510:intron	30.0%
AGAAAGTTAGAAGAGTTACA+AGG	+	chr1_3:5704767-5704786	Msa0099510:intron	30.0%
AGGCCCATTTAACAAAATAA+AGG	+	chr1_3:5704833-5704852	Msa0099510:intron	30.0%
GAAGTTGCTAAGAAGAAAAA+AGG	+	chr1_3:5705132-5705151	Msa0099510:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	5703197	5706707	5703197	ID=Msa0099510;Name=Msa0099510
chr1_3	mRNA	5703197	5706707	5703197	ID=Msa0099510-mRNA-1;Parent=Msa0099510;Name=Msa0099510-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|0.8\|0.66\|1\|0.4\|0.66\|6\|312\|233
chr1_3	exon	5703197	5703416	5703197	ID=Msa0099510-mRNA-1:exon:2171;Parent=Msa0099510-mRNA-1
chr1_3	exon	5704018	5704119	5704018	ID=Msa0099510-mRNA-1:exon:2172;Parent=Msa0099510-mRNA-1
chr1_3	exon	5705097	5705159	5705097	ID=Msa0099510-mRNA-1:exon:2173;Parent=Msa0099510-mRNA-1
chr1_3	exon	5705593	5705700	5705593	ID=Msa0099510-mRNA-1:exon:2174;Parent=Msa0099510-mRNA-1
chr1_3	exon	5706055	5706098	5706055	ID=Msa0099510-mRNA-1:exon:2175;Parent=Msa0099510-mRNA-1
chr1_3	exon	5706231	5706707	5706231	ID=Msa0099510-mRNA-1:exon:2176;Parent=Msa0099510-mRNA-1
chr1_3	CDS	5703197	5703416	5703197	ID=Msa0099510-mRNA-1:cds;Parent=Msa0099510-mRNA-1
chr1_3	CDS	5704018	5704119	5704018	ID=Msa0099510-mRNA-1:cds;Parent=Msa0099510-mRNA-1
chr1_3	CDS	5705097	5705159	5705097	ID=Msa0099510-mRNA-1:cds;Parent=Msa0099510-mRNA-1
chr1_3	CDS	5705593	5705700	5705593	ID=Msa0099510-mRNA-1:cds;Parent=Msa0099510-mRNA-1
chr1_3	CDS	5706055	5706098	5706055	ID=Msa0099510-mRNA-1:cds;Parent=Msa0099510-mRNA-1
chr1_3	CDS	5706231	5706395	5706231	ID=Msa0099510-mRNA-1:cds;Parent=Msa0099510-mRNA-1
chr1_3	three_prime_UTR	5706396	5706707	5706396	ID=Msa0099510-mRNA-1:three_prime_utr;Parent=Msa0099510-mRNA-1

Gene Sequence

>Msa0099510

TTGGGCCGCGTAACCCACCAATTTATCGAGATATATATACACTCTTGGTTGCCGATATTCACTCAGGTTTTTCTCTCGTATTGCGTTTCTGGTTGGTGTTGCTCTTCTTTTTCTCACCACTCGTTCTTCATGTTAGGCATGCTGTTGAATCTGAGTTTGTCTTTGTTCCATTTTCAGGTTCTTCACTGTTACACGCACATCGTTCTTCACTTTGTTCAAGAATTTGCTATGAAGCGTCGCTCAAAAAACAACAAAAACGAAGTTGCTAAGGAGCCTCATTTGACGTTAAAATCATCAATTGCTAAGATGAAAAAAGGAGAAAAATTGGCCGAGCGTCGCTCAAAAAACAGCAAAAATGAAGTTGCTAAGAAGAAAAAAGGAGAAAAATTTGCTAAGGAGCATCACTCAAAAAACATAAAAAATGATGTTCCTAAGAAGCAAAAAGTAGGGAGCACAAAGAGAAAGCCTCTTACTGAGAAGCAAAAGGAAAAAAAAATAAGGAAGCAATATGTGTGGTGGAAGATCAACCCTTGTTGTGAAAGCATTGCCGATTTTCATGGGTTGAGTATACATAGCAAGATCTCGCGTAAGAAGGTTTTACTGGTTGATAATGACGTGGCTACTGATATGGACCCAAGAGCTGATGAAATAAGTGGGAACAAGAATGGGATGGGCCTAGAAGAAGAAAAGGAAGAGCAATAA

Protein sequence

>Msa0099510

LGRVTHQFIEIYIHSWLPIFTQVFLSYCVSGWCCSSFSHHSFFMLGMLLNLSLSLFHFQVLHCYTHIVLHFVQEFAMKRRSKNNKNEVAKEPHLTLKSSIAKMKKGEKLAERRSKNSKNEVAKKKKGEKFAKEHHSKNIKNDVPKKQKVGSTKRKPLTEKQKEKKIRKQYVWWKINPCCESIADFHGLSIHSKISRKKVLLVDNDVATDMDPRADEISGNKNGMGLEEEKEEQ*