AlfalfaGEDB | Msa0198940

M. sativa cultivar zhongmu-4 / Msa0198940

KEGG: K09422
GO: GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0000785 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003691 GO:0003697 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008134 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0033613 GO:0033993 GO:0034641 GO:0042162 GO:0042221 GO:0042493 GO:0042592 GO:0042802 GO:0042803 GO:0043047 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046677 GO:0046686 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0070491 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097305 GO:0098687 GO:0098847 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1903506 GO:1990841 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0198940	XP_013463066.1	97.980	297	6	0	1	297	1	297	0.0	588

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0198940	sp\|Q8VWK4\|TRB1_ARATH	57.895	247	91	6	1	241	1	240	4.65e-87	265

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0198940	A0A072VG04	97.980	297	6	0	1	297	1	297	0.0	588

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TFs/TRs:

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Gene ID	Type	Classification
Msa0198940	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0198940	-0.823322	1.474217e-53	-8.615850e-47
Msa0000590	Msa0198940	0.824468	7.940439e-54	-8.615850e-47
Msa0026660	Msa0198940	0.823273	1.513681e-53	-8.615850e-47
Msa0027580	Msa0198940	0.807825	4.184197e-50	-8.615850e-47
Msa0036370	Msa0198940	0.851067	1.129879e-60	-8.615850e-47
Msa0043730	Msa0198940	0.803932	2.753609e-49	-8.615850e-47
Msa0055100	Msa0198940	0.802702	4.948469e-49	-8.615850e-47
Msa0065650	Msa0198940	0.804736	1.872289e-49	-8.615850e-47
Msa0072170	Msa0198940	0.822527	2.258152e-53	-8.615850e-47
Msa0075340	Msa0198940	0.809549	1.791401e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0198940	MtrunA17_Chr2g0293381	97.980	297	6	0	1	297	1	297	0.0	588
Msa0198940	MtrunA17_Chr8g0384671	74.689	241	55	2	1	239	1	237	1.14e-126	363
Msa0198940	MtrunA17_Chr4g0054131	44.664	253	124	5	1	239	1	251	5.83e-64	203
Msa0198940	MtrunA17_Chr5g0401061	48.548	241	111	6	1	236	1	233	9.67e-64	202
Msa0198940	MtrunA17_Chr8g0383821	64.000	125	45	0	1	125	1	125	4.92e-52	167
Msa0198940	MtrunA17_Chr1g0195251	63.636	121	41	2	125	245	295	412	1.88e-39	143
Msa0198940	MtrunA17_Chr8g0342871	33.108	296	155	7	1	282	1	267	2.63e-32	120
Msa0198940	MtrunA17_Chr2g0329921	35.349	215	108	4	1	190	1	209	1.48e-28	111
Msa0198940	MtrunA17_Chr1g0166681	67.123	73	23	1	1	73	1	72	5.30e-27	104
Msa0198940	MtrunA17_Chr1g0195261	72.000	50	14	0	1	50	1	50	3.22e-20	82.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0198940	AT1G49950.3	57.895	247	91	6	1	241	1	240	4.73e-88	265
Msa0198940	AT1G49950.1	57.895	247	91	6	1	241	1	240	4.73e-88	265
Msa0198940	AT1G49950.2	57.895	247	91	6	1	241	1	240	4.73e-88	265
Msa0198940	AT3G49850.1	42.735	234	128	3	1	232	1	230	3.77e-53	176
Msa0198940	AT3G49850.2	42.735	234	128	3	1	232	1	230	3.77e-53	176
Msa0198940	AT5G67580.2	43.210	243	131	5	1	239	1	240	1.77e-52	174
Msa0198940	AT5G67580.1	43.210	243	131	5	1	239	1	240	1.77e-52	174
Msa0198940	AT1G72740.2	37.056	197	121	2	1	197	1	194	5.43e-32	120
Msa0198940	AT1G72740.1	36.453	203	120	3	1	197	1	200	1.13e-29	114
Msa0198940	AT1G17520.4	38.342	193	112	2	1	187	1	192	2.25e-28	110

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Find 94 sgRNAs with CRISPR-Local

Find 337 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTGGAGTTATCAAGCA+TGG	0.542386	2_1:-17694209	Msa0198940:CDS
AACCATTGCTTCTTTCATTG+AGG	0.488576	2_1:-17693034	Msa0198940:intron
AACCCATTTAATGTGAATTT+AGG	0.205428	2_1:-17694875	Msa0198940:five_prime_UTR
AACTGCTCGAGCAGCACATG+CGG	0.528875	2_1:+17690727	None:intergenic
AAGCCAAGATTTACCGTCTT+TGG	0.203558	2_1:+17690576	None:intergenic
AAGCTGGAGTTATCAAGCAT+GGG	0.537538	2_1:-17694208	Msa0198940:CDS
AAGGTCCATGTCTGCACAAG+AGG	0.566181	2_1:-17690753	Msa0198940:CDS
AATACACGAGGACAACTCTA+TGG	0.413485	2_1:-17693907	Msa0198940:CDS
AATCGATCTCGGACTTGGTA+TGG	0.471610	2_1:+17690792	None:intergenic
AATGAAAAGGGTGCATTATC+AGG	0.328121	2_1:-17693934	Msa0198940:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAAATCGGAAAAAGGAAAT+CGG	+	chr2_1:17690489-17690508	None:intergenic	30.0%
TGGGTAACCAAAAAATACAT+TGG	+	chr2_1:17690808-17690827	None:intergenic	30.0%
ATCTAAAGGTTTCGTTATGT+GGG	-	chr2_1:17691223-17691242	Msa0198940:intron	30.0%
TCATCATCACTTAGAGAAAA+AGG	+	chr2_1:17691383-17691402	None:intergenic	30.0%
ATATCTCTTGAAACTTGAAG+AGG	+	chr2_1:17691422-17691441	None:intergenic	30.0%
AGATTCTCTGATTGAAATAC+GGG	-	chr2_1:17691647-17691666	Msa0198940:intron	30.0%
GAATCCTATTCAATTCTTGA+TGG	-	chr2_1:17691671-17691690	Msa0198940:intron	30.0%
TAACTGTGTTTACGTTATAC+AGG	-	chr2_1:17692137-17692156	Msa0198940:intron	30.0%
AAGCAGAACAAATAAAAGTG+TGG	+	chr2_1:17692267-17692286	None:intergenic	30.0%
CTACCTTGTGAATTGTTATA+TGG	-	chr2_1:17692586-17692605	Msa0198940:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	17690337	17694941	17690337	ID=Msa0198940;Name=Msa0198940
chr2_1	mRNA	17690337	17694941	17690337	ID=Msa0198940-mRNA-1;Parent=Msa0198940;Name=Msa0198940-mRNA-1;_AED=0.35;_eAED=0.35;_QI=167\|1\|1\|1\|0.6\|0.66\|6\|249\|297
chr2_1	exon	17690337	17690939	17690337	ID=Msa0198940-mRNA-1:exon:7526;Parent=Msa0198940-mRNA-1
chr2_1	exon	17691887	17691970	17691887	ID=Msa0198940-mRNA-1:exon:7525;Parent=Msa0198940-mRNA-1
chr2_1	exon	17693035	17693119	17693035	ID=Msa0198940-mRNA-1:exon:7524;Parent=Msa0198940-mRNA-1
chr2_1	exon	17693801	17694021	17693801	ID=Msa0198940-mRNA-1:exon:7523;Parent=Msa0198940-mRNA-1
chr2_1	exon	17694130	17694307	17694130	ID=Msa0198940-mRNA-1:exon:7522;Parent=Msa0198940-mRNA-1
chr2_1	exon	17694803	17694941	17694803	ID=Msa0198940-mRNA-1:exon:7521;Parent=Msa0198940-mRNA-1
chr2_1	five_prime_UTR	17694803	17694941	17694803	ID=Msa0198940-mRNA-1:five_prime_utr;Parent=Msa0198940-mRNA-1
chr2_1	five_prime_UTR	17694280	17694307	17694280	ID=Msa0198940-mRNA-1:five_prime_utr;Parent=Msa0198940-mRNA-1
chr2_1	CDS	17694130	17694279	17694130	ID=Msa0198940-mRNA-1:cds;Parent=Msa0198940-mRNA-1
chr2_1	CDS	17693801	17694021	17693801	ID=Msa0198940-mRNA-1:cds;Parent=Msa0198940-mRNA-1
chr2_1	CDS	17693035	17693119	17693035	ID=Msa0198940-mRNA-1:cds;Parent=Msa0198940-mRNA-1
chr2_1	CDS	17691887	17691970	17691887	ID=Msa0198940-mRNA-1:cds;Parent=Msa0198940-mRNA-1
chr2_1	CDS	17690586	17690939	17690586	ID=Msa0198940-mRNA-1:cds;Parent=Msa0198940-mRNA-1
chr2_1	three_prime_UTR	17690337	17690585	17690337	ID=Msa0198940-mRNA-1:three_prime_utr;Parent=Msa0198940-mRNA-1

Gene Sequence

>Msa0198940

ATGGGTGTTCCTAAGCAAAAATGGTCAGAAGAAGAGGAATCCGCACTTAAAGCTGGAGTTATCAAGCATGGGGTGGGTAAATGGCGCACGATCCTCAAGGATCCTGAATTTAACCATGTTTTATACCTTCGGTCAAATGTTGATCTAAAGGATAAATGGCGAAATTTGAGCGTGATGGCAAGTGGATGGGCTTCGAGGGAGAAGCCAAAGGGAGCAATGAAAAGGGTGCATTATCAGGCACCAATACACGAGGACAACTCTATGGCTGTCACTCCTTTTTCTCTAAGTGATGATGAATTTGTTGATGTTCAGCCTCTTCAAGTTTCAAGAGATATGCCGCAAATTTCTGGCCCAAAAAGCTCTAGTATAAGGTTGGATAACCTTATAATGGAAGCTATATCTAGCTTGAATGAACTTGGTGGTTCTAATAAAACAACCATTGCTTCTTTCATTGAGGACCATTACTGGGCACCTGCTGACTTCAAAAAGCTGCTGTCAGCAAAACTGAAGTATCTTACATCTCGTGGAAAACTGATCAAGGTGAAGCGCAGGTATAGGATTGCACCTACTCCAGCATATTCAGACAGAGGAAGACACCCATCAACATTATTATTGGAAGGGAGGCAAAAAGGCTCTATGAAATTTTACAGGGATGAGAGCAATATCCATACCAAGTCCGAGATCGATTTAGAATTAGAAAAAATAAGGTCCATGTCTGCACAAGAGGCAGCCGCATGTGCTGCTCGAGCAGTTGCTGAAGCGGAAGCCCTCATGGCGGAGGCTGAAGAGGCAACAAAGGAGGCAGAGGCTGCAGAAGCGGAGGCAGATGCAATGGAAGCTTTTGTAGAAGCTGAAAGGAAAAGGCTGAAGGAGAAAAACACCCAAAGACGGTAA

Protein sequence

>Msa0198940

MGVPKQKWSEEEESALKAGVIKHGVGKWRTILKDPEFNHVLYLRSNVDLKDKWRNLSVMASGWASREKPKGAMKRVHYQAPIHEDNSMAVTPFSLSDDEFVDVQPLQVSRDMPQISGPKSSSIRLDNLIMEAISSLNELGGSNKTTIASFIEDHYWAPADFKKLLSAKLKYLTSRGKLIKVKRRYRIAPTPAYSDRGRHPSTLLLEGRQKGSMKFYRDESNIHTKSEIDLELEKIRSMSAQEAAACAARAVAEAEALMAEAEEATKEAEAAEAEADAMEAFVEAERKRLKEKNTQRR*