AlfalfaGEDB | Msa1201240

M. sativa cultivar zhongmu-4 / Msa1201240

KEGG: -
GO: GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006109 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009378 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010565 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0030656 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043255 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045912 GO:0046137 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051193 GO:0051195 GO:0051196 GO:0051198 GO:0051276 GO:0051716 GO:0062012 GO:0062014 GO:0065007 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:2000082 GO:2000083
PFAM: PF03478.21

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1201240	XP_003629214.1	91.270	378	32	1	106	483	1	377	0.0	704

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1201240	sp\|Q3EBZ2\|SKI23_ARATH	31.135	379	224	13	110	466	2	365	3.86e-38	147

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0012040	Msa1201240	0.816087	6.626211e-52	-8.615850e-47
Msa0020300	Msa1201240	0.833633	4.766469e-56	-8.615850e-47
Msa0052640	Msa1201240	0.807823	4.187233e-50	-8.615850e-47
Msa0052770	Msa1201240	0.817401	3.362008e-52	-8.615850e-47
Msa0113750	Msa1201240	0.826418	2.742448e-54	-8.615850e-47
Msa0150820	Msa1201240	0.822585	2.189566e-53	-8.615850e-47
Msa0159180	Msa1201240	0.844700	6.425711e-59	-8.615850e-47
Msa0159220	Msa1201240	0.819394	1.188243e-52	-8.615850e-47
Msa0255080	Msa1201240	0.802870	4.569835e-49	-8.615850e-47
Msa0298700	Msa1201240	0.810381	1.186043e-50	-8.615850e-47

Showing 1 to 10 of 49 entries

Previous1 2 3 4 5Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1201240	MtrunA17_Chr8g0371101	91.270	378	32	1	106	483	1	377	0.0	704
Msa1201240	MtrunA17_Chr8g0371031	76.842	380	84	4	106	483	20	397	0.0	595
Msa1201240	MtrunA17_Chr2g0300541	73.067	401	96	5	86	483	1	392	0.0	560
Msa1201240	MtrunA17_Chr5g0435201	35.027	374	194	12	106	465	1	339	1.55e-50	176
Msa1201240	MtrunA17_Chr6g0488491	34.474	380	192	11	107	469	4	343	1.25e-49	174
Msa1201240	MtrunA17_Chr8g0378641	33.588	393	198	14	101	459	1	364	1.43e-47	169
Msa1201240	MtrunA17_Chr7g0261121	32.682	358	192	11	113	445	15	348	1.01e-43	158
Msa1201240	MtrunA17_Chr1g0157711	30.227	397	222	13	106	481	1	363	1.27e-35	135
Msa1201240	MtrunA17_Chr3g0088831	30.282	426	235	15	104	481	9	420	3.83e-35	135
Msa1201240	MtrunA17_Chr3g0088931	29.156	391	211	14	108	470	2	354	3.65e-30	120

Showing 1 to 10 of 45 entries

Previous1 2 3 4 5Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1201240	AT2G17030.1	31.135	379	224	13	110	466	2	365	3.92e-39	147
Msa1201240	AT1G65770.1	30.084	359	217	10	110	459	2	335	3.35e-35	135
Msa1201240	AT4G35733.1	29.365	378	211	12	106	464	1	341	3.67e-34	132
Msa1201240	AT1G44080.1	27.419	372	203	9	109	463	3	324	4.72e-29	117
Msa1201240	AT3G25750.2	28.760	379	205	14	108	461	2	340	1.16e-28	117
Msa1201240	AT2G17036.2	27.614	373	239	11	110	466	1	358	1.49e-28	117
Msa1201240	AT2G17036.1	27.614	373	239	11	110	466	2	359	1.73e-28	117
Msa1201240	AT1G65740.1	29.041	365	225	12	110	459	2	347	2.30e-26	110
Msa1201240	AT3G25750.1	28.117	377	196	13	108	461	2	326	1.41e-25	107
Msa1201240	AT2G26160.1	27.841	352	209	12	108	447	2	320	1.82e-24	104

Showing 1 to 10 of 16 entries

Previous1 2Next

Find 125 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATTTGGTGGAATCTTG+TGG	0.483180	8_1:-54429221	Msa1201240:CDS
AAAGAATTAATTGGATATCA+AGG	0.389911	8_1:-54428996	Msa1201240:CDS
AAAGAGCTATGGTCCAAGAT+AGG	0.372622	8_1:-54429944	Msa1201240:CDS
AAAGGAAAAGAAGGAGAATT+TGG	0.229744	8_1:+54429839	None:intergenic
AAAGGTTGATCGGATACGGC+GGG	0.581865	8_1:+54431458	None:intergenic
AAATCATGACAGAAGCAAGC+TGG	0.516173	8_1:+54428105	None:intergenic
AAATTAGGATTCATGAAATA+TGG	0.332072	8_1:-54429413	Msa1201240:CDS
AACATGAGAGGGAACAATGT+TGG	0.526890	8_1:-54429161	Msa1201240:CDS
AACATTTGGTGGAATCTTGT+GGG	0.442266	8_1:-54429220	Msa1201240:CDS
AACCAACCTTTGGTATAAGA+AGG	0.522904	8_1:+54429704	None:intergenic

Showing 1 to 10 of 125 entries

Previous1 2 3 4 5…13Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GTTACTAGATCATCCAATTA+AGG	-	chr8_1:54428348-54428367	Msa1201240:intron	30.0%
AAAAAAAATGACCAAAGGCT+AGG	+	chr8_1:54428382-54428401	None:intergenic	30.0%
ACACATGAATAGAAAACAAG+TGG	+	chr8_1:54428553-54428572	None:intergenic	30.0%
AAATTCATGCTTACAAAACC+TGG	-	chr8_1:54428755-54428774	Msa1201240:intron	30.0%
TCACTCTTTATAAACTTCAG+TGG	-	chr8_1:54428795-54428814	Msa1201240:intron	30.0%
TGTCACATAGATTAAAGACA+AGG	+	chr8_1:54428821-54428840	None:intergenic	30.0%
TCTCAATTTCACGTTCAAAT+TGG	-	chr8_1:54428913-54428932	Msa1201240:CDS	30.0%
TGGATTTCTATTAGCATGTT+TGG	+	chr8_1:54428974-54428993	None:intergenic	30.0%
GACTTTAAATGTCTTCTAAG+TGG	+	chr8_1:54429421-54429440	None:intergenic	30.0%
ATACCTGTGAATTTACAAGA+AGG	+	chr8_1:54429561-54429580	None:intergenic	30.0%

Showing 1 to 10 of 249 entries

Previous1 2 3 4 5…25Next

Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	54427982	54431645	54427982	ID=Msa1201240;Name=Msa1201240
chr8_1	mRNA	54427982	54431645	54427982	ID=Msa1201240-mRNA-1;Parent=Msa1201240;Name=Msa1201240-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0\|0.66\|0.5\|1\|0.33\|0.25\|4\|366\|483
chr8_1	exon	54427982	54428312	54427982	ID=Msa1201240-mRNA-1:exon:17469;Parent=Msa1201240-mRNA-1
chr8_1	exon	54428828	54430050	54428828	ID=Msa1201240-mRNA-1:exon:17468;Parent=Msa1201240-mRNA-1
chr8_1	exon	54431280	54431329	54431280	ID=Msa1201240-mRNA-1:exon:17467;Parent=Msa1201240-mRNA-1
chr8_1	exon	54431432	54431645	54431432	ID=Msa1201240-mRNA-1:exon:17466;Parent=Msa1201240-mRNA-1
chr8_1	CDS	54431432	54431645	54431432	ID=Msa1201240-mRNA-1:cds;Parent=Msa1201240-mRNA-1
chr8_1	CDS	54431280	54431329	54431280	ID=Msa1201240-mRNA-1:cds;Parent=Msa1201240-mRNA-1
chr8_1	CDS	54428863	54430050	54428863	ID=Msa1201240-mRNA-1:cds;Parent=Msa1201240-mRNA-1
chr8_1	three_prime_UTR	54428828	54428862	54428828	ID=Msa1201240-mRNA-1:three_prime_utr;Parent=Msa1201240-mRNA-1
chr8_1	three_prime_UTR	54427982	54428312	54427982	ID=Msa1201240-mRNA-1:three_prime_utr;Parent=Msa1201240-mRNA-1

Gene Sequence

>Msa1201240

TTTCTCTCACCTTTCTCTCTTTCACTTCATCATCTATATTTTCATAACACTTTCTTTTTTCTTTTCTTTTCTCTTCATCATCTATATTCCTCTTCTTCAATTCTATTCCCTTTGTCCTTCCGCCATCATCAGTCATCACCCTACGTCTGCCCCGACTGGGGGCATCCCGCCGTATCCGATCAACCTTTCTTGCTTGTGCCACCACTGATTACAGGTCCTGTCTGTATATCTACCGTCTCACATGGTGAAATTCTAATGTTCATTGTATTTTTGACATACAAAAAAAAAAAAACACAAATCTTTGAACTGTCAGCCATGGATGAAAAAGTAGATTGGTCTCATCTCCCCAAAGAGCTATGGTCCAAGATAGGGAAGTATCTTGATAATCACATAGATATTCTCAGATTTCGCAGTGTTTGTGAACTATTTCATTCTTCCATTCCTCCCTCTCTTCCAAATTCTCCTTCTTTTCCTTTACAAATACCTCGCACCATCCCTGTCTCCCTATACAATTACCTCTATCAATCAACTATTTATCTTATTGAACCAACTAATGCAAGTTCCATCTTCAATTTACCACCTTTAGCACCTTCTTATACCAAAGGTTGGTTGATCAAAGTGGAAGAATCAAAGAATAATCCTTTGAAGAGTTTGTTGAGTCCTATCTCCGACTGCAAATTATCATATCCTCTTGACAGTAACAACAGTTCTCCAATTATATGGAACTTGTTGAATTATAGGGTCATTGAGCTATGCAAGTCATATTCATTTCAAAAGACACCATACTCATCAAGTTTTGTGAGCAAAGTTGTGTCCTATCCTAACTCTCCTTGGATTAATGTTGGGGATTGTGTAGCTTGTTGTATCTTTCAGGAAGGTAAATTAGGATTCATGAAATATGGAGACACAAAATGGAAACTTGTGGATGAAAACAATTTCTACTATGATGATGTCATTGTATTCAAGGGTCAGTTTTATGTTACTGATAAATGGGGAACTATTTCATGGATTAATATTTCTTCTTTGAAGTTGATACAATTTTCACCTCCTTTGTGTGGGTTTGGAAACAAGAAACATTTGGTGGAATCTTGTGGGAATCTTTATGTTGTTGATAGATACTATGAAGGTGAAAACATGAGAGGGAACAATGTTGGAAGACGCCATGATCGGGACGCGGTTGTGGAGTGTTTCAAAGTTTATATGTTGGATGAAGAATGGGGGAAATGGGTTGATGTGAAAAACTTGAGAGATAGAGCCTTCATTTTAAGCAGCAGTTGTAATTTCTCAGTTTCTGCTAAAGAATTAATTGGATATCAAGGGAATTGCATCTACTTTAAGGATACTTTTAATGCTCGTATGTACAGCTTGGATGATAATATAATCATTACCGTTGATTTTGATCCTTGCATTGACAAGACTTTGTGGTCTCATTCACGTTGGATGAGATGTTAG

Protein sequence

>Msa1201240

FLSPFSLSLHHLYFHNTFFFLFFSLHHLYSSSSILFPLSFRHHQSSPYVCPDWGHPAVSDQPFLLVPPLITGPVCISTVSHGEILMFIVFLTYKKKKTQIFELSAMDEKVDWSHLPKELWSKIGKYLDNHIDILRFRSVCELFHSSIPPSLPNSPSFPLQIPRTIPVSLYNYLYQSTIYLIEPTNASSIFNLPPLAPSYTKGWLIKVEESKNNPLKSLLSPISDCKLSYPLDSNNSSPIIWNLLNYRVIELCKSYSFQKTPYSSSFVSKVVSYPNSPWINVGDCVACCIFQEGKLGFMKYGDTKWKLVDENNFYYDDVIVFKGQFYVTDKWGTISWINISSLKLIQFSPPLCGFGNKKHLVESCGNLYVVDRYYEGENMRGNNVGRRHDRDAVVECFKVYMLDEEWGKWVDVKNLRDRAFILSSSCNFSVSAKELIGYQGNCIYFKDTFNARMYSLDDNIIITVDFDPCIDKTLWSHSRWMRC*