AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0737600

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0737600 MtrunA17_Chr5g0435351 95.617 616 20 1 1 609 1 616 0.0 1203
Msa0737600 MtrunA17_Chr3g0111941 53.858 635 247 13 1 599 1 625 0.0 592
Msa0737600 MtrunA17_Chr7g0238741 37.048 664 296 19 1 597 1 609 4.27e-107 335
Msa0737600 MtrunA17_Chr2g0328331 43.710 469 213 9 157 588 253 707 2.59e-106 337
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0737600 AT5G13820.2 44.704 642 297 14 1 599 1 627 2.13e-153 456
Msa0737600 AT5G13820.1 44.704 642 297 14 1 599 1 627 2.13e-153 456
Msa0737600 AT3G12560.1 42.969 640 281 15 1 597 1 599 1.58e-142 427
Msa0737600 AT3G12560.2 42.969 640 281 15 1 597 1 599 1.58e-142 427
Msa0737600 AT3G46590.1 38.863 633 271 23 1 605 1 545 5.18e-100 315
Msa0737600 AT3G46590.2 38.644 634 272 24 1 605 1 546 5.25e-99 313
Msa0737600 AT3G46590.3 38.801 634 265 24 1 605 1 540 7.09e-98 310
Msa0737600 AT3G46590.5 39.020 592 245 23 42 605 2 505 1.24e-92 295
Msa0737600 AT5G59430.3 36.033 605 310 18 10 596 11 556 5.68e-83 271
Msa0737600 AT5G59430.4 41.809 409 182 10 189 588 187 548 6.91e-78 258
Msa0737600 AT5G59430.2 41.809 409 182 10 189 588 188 549 6.93e-78 258
Msa0737600 AT5G59430.1 41.809 409 182 10 189 588 188 549 6.93e-78 258
Msa0737600 AT5G59430.5 41.809 409 182 10 189 588 188 549 6.93e-78 258
Msa0737600 AT3G53790.1 42.857 336 128 7 259 588 119 396 9.81e-67 223
Msa0737600 AT3G46590.4 34.198 424 196 19 1 399 1 366 7.12e-40 150

Find 160 sgRNAs with CRISPR-Local

Find 304 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCCAACCTGTTTAAATTTA+AGG 0.068365 5_1:-54883392 None:intergenic
TTTCCTCCAATTACTTTCTT+AGG 0.109494 5_1:-54880915 None:intergenic
TGCAACTGTTGCTTCATTAA+AGG 0.170101 5_1:+54881129 Msa0737600:CDS
ATGATGACGAAAACTTTATT+AGG 0.242004 5_1:+54880342 Msa0737600:CDS
GGAGCTATTGGATAGGGTTT+TGG 0.246722 5_1:+54883186 Msa0737600:CDS
AATTACTTTCTTAGGGGAAT+TGG 0.254177 5_1:-54880907 None:intergenic
GGAAACAATTCCCCACAAAA+TGG 0.254603 5_1:-54880266 None:intergenic
TGACAGCATAATGAAGAAAA+AGG 0.275761 5_1:+54883530 Msa0737600:three_prime_UTR
AATTCCCCTAAGAAAGTAAT+TGG 0.278506 5_1:+54880909 Msa0737600:CDS
TTCCTTAACAAATTCTTTGC+TGG 0.278531 5_1:+54883369 Msa0737600:three_prime_UTR
AGAGACTTGGTAATGGATTC+AGG 0.281628 5_1:+54879707 Msa0737600:CDS
GAAGCAACAGTTGCAGTTTC+GGG 0.282983 5_1:-54881121 None:intergenic
TGGCAACTTGTAACTAAATA+AGG 0.296560 5_1:+54883410 Msa0737600:three_prime_UTR
TGCAAAAGTTCGCGTTTCTA+AGG 0.302423 5_1:+54880953 Msa0737600:CDS
TTACTTACTCTTACAGATCT+TGG 0.307105 5_1:-54879760 None:intergenic
TGGTTTGTGTGCAGGATAAA+TGG 0.309116 5_1:+54883101 Msa0737600:intron
TGAAGCAACAGTTGCAGTTT+CGG 0.311212 5_1:-54881122 None:intergenic
AGTTTCGCATCGAGTCATTC+AGG 0.318139 5_1:+54881074 Msa0737600:CDS
TTCAAATTGGAGAATAGGTT+TGG 0.318263 5_1:+54880116 Msa0737600:CDS
CTAACCTATCTCTCTTTGTT+TGG 0.325015 5_1:-54878873 None:intergenic
TCCTCCTTGCTTACAAATAC+TGG 0.330363 5_1:+54882084 Msa0737600:CDS
ACATTGCACGCAAAATAATT+AGG 0.331937 5_1:+54880411 Msa0737600:CDS
CGAAATCGCTCTTCTGTTAA+CGG 0.335512 5_1:-54879987 None:intergenic
GAGGCGGTGATGACTATAAT+AGG 0.341788 5_1:+54881315 Msa0737600:CDS
GGGAGGAATGCTAGTAAGTT+AGG 0.342627 5_1:+54880311 Msa0737600:CDS
AGGGATTTCTGTTGCCAAAC+AGG 0.342636 5_1:+54882059 Msa0737600:CDS
GGAACTCCCTCCATAGATTC+AGG 0.342756 5_1:+54882039 Msa0737600:CDS
TGGAGCAACCTTCCAGTGTT+TGG 0.343786 5_1:-54880453 None:intergenic
TTCCTCCAATTACTTTCTTA+GGG 0.346950 5_1:-54880914 None:intergenic
GCCAGTTCCTCAGGAGCTAT+TGG 0.348630 5_1:+54883174 Msa0737600:CDS
CTTGGACATCTAGGTACCTT+AGG 0.349158 5_1:-54879742 None:intergenic
CTAGATTGCTGTAATGTAAC+TGG 0.349404 5_1:+54883436 Msa0737600:three_prime_UTR
ACGTTGTTGACTTGTAACTA+TGG 0.354132 5_1:+54883305 Msa0737600:three_prime_UTR
TCAACTTCAGACACAGAAAA+TGG 0.357936 5_1:-54882291 None:intergenic
TGCTGGCCTTAAATTTAAAC+AGG 0.360046 5_1:+54883386 Msa0737600:three_prime_UTR
GCATGTTGGTGTTCTTGTTA+AGG 0.368440 5_1:+54881347 Msa0737600:CDS
AACCTTCCAGTGTTTGGAAT+TGG 0.390971 5_1:-54880447 None:intergenic
CGCGTTTCTAAGGATTCTAA+TGG 0.394563 5_1:+54880963 Msa0737600:CDS
TCCAATAGCTCCTGAGGAAC+TGG 0.395946 5_1:-54883175 None:intergenic
TTCAGACTTCACATTATTGT+TGG 0.402330 5_1:-54880090 None:intergenic
GCTTCTCCAGTTGTTTGTGC+TGG 0.408670 5_1:+54881474 Msa0737600:CDS
AAGCAAGGAGGAACCCTGTT+TGG 0.410467 5_1:-54882073 None:intergenic
TGTTCACAATCTTTCAACTT+TGG 0.411776 5_1:-54880473 None:intergenic
AACAGAAATCCCTGAATCTA+TGG 0.411949 5_1:-54882049 None:intergenic
GGATCACCAGCACAAACAAC+TGG 0.414617 5_1:-54881480 None:intergenic
CATGTTGGTGTTCTTGTTAA+GGG 0.416802 5_1:+54881348 Msa0737600:CDS
GGAACGTCGACGTAAAGTTC+TGG 0.420090 5_1:-54881100 None:intergenic
GCTTGACATGCTGCTTGGAT+TGG 0.423506 5_1:-54883234 None:intergenic
TGACATGCTGCTTGGATTGG+TGG 0.426360 5_1:-54883231 None:intergenic
GAAACAATTCCCCACAAAAT+GGG 0.429990 5_1:-54880265 None:intergenic
CATCACGAGGCTGACAGTTC+AGG 0.432205 5_1:+54880179 Msa0737600:CDS
TAATGGATTCAGGGACTATC+AGG 0.432252 5_1:+54879717 Msa0737600:CDS
GAGAGGACAGCCAGTTCCTC+AGG 0.432830 5_1:+54883165 Msa0737600:CDS
TCAACCAAACAAAGAGAGAT+AGG 0.434280 5_1:+54878869 Msa0737600:five_prime_UTR
TTGATGCTTGACATGCTGCT+TGG 0.441541 5_1:-54883239 None:intergenic
GGCCTTAAATTTAAACAGGT+TGG 0.445616 5_1:+54883390 Msa0737600:three_prime_UTR
GATAAACTAACACAAGATTC+CGG 0.452961 5_1:+54882165 Msa0737600:CDS
CTTACAGATCTTGGACATCT+AGG 0.453561 5_1:-54879751 None:intergenic
GTTCATGCAGTTGAGGAAGT+TGG 0.454012 5_1:+54882321 Msa0737600:CDS
CAAGGGAAGAAGCTGATTCA+TGG 0.454467 5_1:-54882128 None:intergenic
TTCCTTGAAAAGGAAGCATT+GGG 0.461169 5_1:-54880287 None:intergenic
TCCTCAGGAGCTATTGGATA+GGG 0.470302 5_1:+54883180 Msa0737600:CDS
ATTCCTCCCATTCCTTGAAA+AGG 0.474110 5_1:-54880297 None:intergenic
TAGGACTTATGTAGACTTGA+AGG 0.479281 5_1:+54882469 Msa0737600:CDS
GGCTGTCCTCTCCTTTGTTG+AGG 0.480024 5_1:-54883154 None:intergenic
ATTCCTTGAAAAGGAAGCAT+TGG 0.481452 5_1:-54880288 None:intergenic
TTGGATTTGTCTAGGTCTCT+AGG 0.484229 5_1:+54882018 Msa0737600:intron
GCAGTTGAGGAAGTTGGAAC+TGG 0.488859 5_1:+54882327 Msa0737600:CDS
AGAGGAAGAAATTATCAGAC+AGG 0.491022 5_1:+54880838 Msa0737600:CDS
GAACTACTTGCATCTTTAGC+CGG 0.491484 5_1:+54879909 Msa0737600:CDS
GAGAAACATCTTGAGAGTGC+TGG 0.500393 5_1:+54880038 Msa0737600:CDS
GGCCAGCAAAGAATTTGTTA+AGG 0.501742 5_1:-54883371 None:intergenic
CGTGAAGGTCTAAAAGCCTT+CGG 0.501813 5_1:-54880386 None:intergenic
TGGTCCAGTGTTCTGATTCA+CGG 0.506571 5_1:-54882238 None:intergenic
AGCAAAGAATTTGTTAAGGA+AGG 0.506841 5_1:-54883367 None:intergenic
ACAGAAGAGCGATTTCGTAA+TGG 0.507986 5_1:+54879993 Msa0737600:CDS
AGACACAGAAAATGGTCTCC+TGG 0.509618 5_1:-54882283 None:intergenic
AGCTTGTACAGCGTCGAACC+AGG 0.512219 5_1:+54882265 Msa0737600:CDS
AACAGAACTCTTCGTCAGAC+TGG 0.514395 5_1:+54881390 Msa0737600:CDS
CCGCTCAAGTTGGCTAAAGA+AGG 0.515374 5_1:-54880230 None:intergenic
CAAGAGTGGCCATCCTCGAC+TGG 0.517246 5_1:-54879879 None:intergenic
TGCGACCCTCGAGTCATAAG+AGG 0.517455 5_1:+54880769 Msa0737600:CDS
TTGAAGAAGAGACTTGGTAA+TGG 0.519239 5_1:+54879700 Msa0737600:CDS
AGAAACATCTTGAGAGTGCT+GGG 0.523924 5_1:+54880039 Msa0737600:CDS
GAACTCCCTCCATAGATTCA+GGG 0.526972 5_1:+54882040 Msa0737600:CDS
GAGACTTGGTAATGGATTCA+GGG 0.529036 5_1:+54879708 Msa0737600:CDS
GATTGTGAACATTCTCGCTA+TGG 0.532088 5_1:+54880485 Msa0737600:CDS
CACAAGTGGTTGGACAACAT+TGG 0.539637 5_1:-54883263 None:intergenic
TCAAGTCTACATAAGTCCTA+TGG 0.543438 5_1:-54882466 None:intergenic
GGTCCAGTGTTCTGATTCAC+GGG 0.543575 5_1:-54882237 None:intergenic
AATGCCTCAGTACTATGAGC+TGG 0.546437 5_1:-54882204 None:intergenic
AGGTCTAAAAGCCTTCGGTT+TGG 0.548415 5_1:-54880381 None:intergenic
GGGATTTCTGTTGCCAAACA+GGG 0.550679 5_1:+54882060 Msa0737600:CDS
TTGGACATCTAGGTACCTTA+GGG 0.553309 5_1:-54879741 None:intergenic
AGATAAACTCGGTTTCGTGT+TGG 0.553459 5_1:+54881434 Msa0737600:CDS
ATGTAGCATCTCAGCCTACC+AGG 0.553875 5_1:+54881511 Msa0737600:CDS
AGTGTCACACTCTGTTGAAG+AGG 0.554973 5_1:+54880820 Msa0737600:CDS
TCTACATAATCACAAGTGGT+TGG 0.557057 5_1:-54883273 None:intergenic
TTTAATGTTACCGCTCAAGT+TGG 0.557954 5_1:-54880240 None:intergenic
AGCACTTGTTCATGCAGTTG+AGG 0.558933 5_1:+54882314 Msa0737600:CDS
TTCCAATTCCAAACACTGGA+AGG 0.567244 5_1:+54880445 Msa0737600:CDS
ACTCTCCTTCAGCAACTCAC+CGG 0.568548 5_1:-54879928 None:intergenic
TGGAACAGAAACTAGCGCTC+CGG 0.569116 5_1:-54882184 None:intergenic
GGTTCGACGCTGTACAAGCT+CGG 0.569476 5_1:-54882262 None:intergenic
TTTAGCCGGTGAGTTGCTGA+AGG 0.574743 5_1:+54879923 Msa0737600:CDS
CAGGGACTATCAGGTCCCTA+AGG 0.575068 5_1:+54879726 Msa0737600:CDS
TCAACTTTCGCTCACCTGGT+AGG 0.576936 5_1:-54881525 None:intergenic
ACCGCCAGTATTTGTAAGCA+AGG 0.577016 5_1:-54882088 None:intergenic
TCCCCTAAGAAAGTAATTGG+AGG 0.577061 5_1:+54880912 Msa0737600:CDS
GCAAAATAATTAGGAAGCGG+TGG 0.577586 5_1:+54880420 Msa0737600:CDS
AGTGATAAATGTTCATGCTA+TGG 0.579354 5_1:+54879675 Msa0737600:exon
CACGCAAAATAATTAGGAAG+CGG 0.581824 5_1:+54880417 Msa0737600:CDS
GTGATGACTATAATAGGAGG+TGG 0.582455 5_1:+54881321 Msa0737600:CDS
GGAGAAGCTTGAGAAGAGCT+AGG 0.582931 5_1:-54881459 None:intergenic
CGACGCTGTACAAGCTCGGA+TGG 0.583494 5_1:-54882258 None:intergenic
GTCTTCCTCTTATGACTCGA+GGG 0.584456 5_1:-54880774 None:intergenic
TCCTCCAATTACTTTCTTAG+GGG 0.586162 5_1:-54880913 None:intergenic
TGAGATGCTACATGGTGAGA+AGG 0.589368 5_1:-54881501 None:intergenic
TTCAAGAAACCAGTCGAGGA+TGG 0.590011 5_1:+54879870 Msa0737600:CDS
ATCAGATGCATTGCTAGAGG+TGG 0.590241 5_1:-54879958 None:intergenic
ATCTCTCCTCAACAAAGGAG+AGG 0.592039 5_1:+54883148 Msa0737600:CDS
CAAAGTTTGCACCAAACCGA+AGG 0.594191 5_1:+54880370 Msa0737600:CDS
TTCCTCAGGAGCTATTGGAT+AGG 0.595354 5_1:+54883179 Msa0737600:CDS
TATCAGATATAGTGTCAGCA+AGG 0.595686 5_1:-54882146 None:intergenic
TTTATAGAGGACAGTTATGG+AGG 0.597438 5_1:+54881296 Msa0737600:intron
AGAAATCCCTGAATCTATGG+AGG 0.598839 5_1:-54882046 None:intergenic
AACATCAGATGCATTGCTAG+AGG 0.601082 5_1:-54879961 None:intergenic
CTGAACTGTCAGCCTCGTGA+TGG 0.601669 5_1:-54880178 None:intergenic
GAGGAAGAAATTATCAGACA+GGG 0.603590 5_1:+54880839 Msa0737600:CDS
TTGAGGAAGTTGGAACTGGA+AGG 0.604280 5_1:+54882331 Msa0737600:CDS
AAACAATTCCCCACAAAATG+GGG 0.608737 5_1:-54880264 None:intergenic
AGTCTTCCTCTTATGACTCG+AGG 0.609874 5_1:-54880775 None:intergenic
GGACTTCCAATTCCAAACAC+TGG 0.611770 5_1:+54880441 Msa0737600:CDS
ATAGAGGACAGTTATGGAGG+CGG 0.617071 5_1:+54881299 Msa0737600:intron
ACCCTATCCAATAGCTCCTG+AGG 0.621261 5_1:-54883181 None:intergenic
TCGATGCTAACTCATGGTGG+AGG 0.623580 5_1:+54880864 Msa0737600:CDS
TCTTTCTACATAATCACAAG+TGG 0.623634 5_1:-54883277 None:intergenic
TTGCGTGCAATGTATCGTGA+AGG 0.623664 5_1:-54880401 None:intergenic
TGGTAGGCTGAGATGCTACA+TGG 0.626444 5_1:-54881509 None:intergenic
CCTTCTTTAGCCAACTTGAG+CGG 0.626589 5_1:+54880230 Msa0737600:CDS
ATGTTGGTGTTCTTGTTAAG+GGG 0.626831 5_1:+54881349 Msa0737600:CDS
AGGGGTTCGATGCTAACTCA+TGG 0.630655 5_1:+54880858 Msa0737600:CDS
GTAGTTCAAAAGCACAAGAG+TGG 0.631884 5_1:-54879893 None:intergenic
ATCAGATATAGTGTCAGCAA+GGG 0.636117 5_1:-54882145 None:intergenic
TATCCAACTGAAGAAAAGCA+AGG 0.636708 5_1:-54883563 None:intergenic
AAAGAAAATATAGATAAACT+CGG 0.652207 5_1:+54881423 Msa0737600:CDS
TCCTTGCTTACAAATACTGG+CGG 0.652781 5_1:+54882087 Msa0737600:CDS
GTTCCCGTGAATCAGAACAC+TGG 0.655650 5_1:+54882234 Msa0737600:CDS
GAAATCCCTGAATCTATGGA+GGG 0.665973 5_1:-54882045 None:intergenic
ATAGGAGGTGGAGTGCATGT+TGG 0.667170 5_1:+54881333 Msa0737600:CDS
GCGGTGATGACTATAATAGG+AGG 0.667399 5_1:+54881318 Msa0737600:CDS
TGTTCCAGCTCATAGTACTG+AGG 0.671950 5_1:+54882200 Msa0737600:CDS
TGCGTTCAAGAAACCAGTCG+AGG 0.672753 5_1:+54879866 Msa0737600:CDS
ATTCATGGTTCATGTCAACA+AGG 0.686818 5_1:-54882113 None:intergenic
ATGGTGTTGAAGAAGAGACT+TGG 0.697633 5_1:+54879694 Msa0737600:CDS
AGGAAGAAATTATCAGACAG+GGG 0.702812 5_1:+54880840 Msa0737600:CDS
GGTTCGATGCTAACTCATGG+TGG 0.706099 5_1:+54880861 Msa0737600:CDS
GTAATTGGAGGAAATAACCG+TGG 0.709826 5_1:+54880924 Msa0737600:CDS
GCCAGTATTTGTAAGCAAGG+AGG 0.726150 5_1:-54882085 None:intergenic
AGAAGTTTCAAACCATCACG+AGG 0.743753 5_1:+54880166 Msa0737600:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAAACAATACAAAAT+GGG - chr5_1:54878947-54878966 None:intergenic 10.0%
!!! TTTTGATTTTTATTTTTTTC+TGG + chr5_1:54879063-54879082 Msa0737600:intron 10.0%
!!! TTTGATTTTTATTTTTTTCT+GGG + chr5_1:54879064-54879083 Msa0737600:intron 10.0%
!! CATAAAAAAACAATACAAAA+TGG - chr5_1:54878948-54878967 None:intergenic 15.0%
!!! TTGATTTTTATTTTTTTCTG+GGG + chr5_1:54879065-54879084 Msa0737600:intron 15.0%
!! TATTATCGAAAAAAATTATG+TGG + chr5_1:54879546-54879565 Msa0737600:intron 15.0%
!!! ATATGAATCTTCAATTTTTA+TGG + chr5_1:54879605-54879624 Msa0737600:intron 15.0%
!! AAAAAAAAAGGAAAAAACTT+GGG - chr5_1:54880712-54880731 None:intergenic 15.0%
!! AAAAAAAAAAGGAAAAAACT+TGG - chr5_1:54880713-54880732 None:intergenic 15.0%
!!! CTTTTCAGTTAAAAAAAAAA+AGG - chr5_1:54880724-54880743 None:intergenic 15.0%
!!! ATTGTTTAACTTTTTTATAG+AGG + chr5_1:54881283-54881302 Msa0737600:intron 15.0%
!! AAAGAAAATATAGATAAACT+CGG + chr5_1:54881423-54881442 Msa0737600:CDS 15.0%
!! ATAAGAATTATTCAATTGAA+TGG - chr5_1:54881977-54881996 None:intergenic 15.0%
!!! AAAGAGAAAAAAAGGATTTT+TGG + chr5_1:54878736-54878755 Msa0737600:five_prime_UTR 20.0%
!!! AAGAGAAAAAAAGGATTTTT+GGG + chr5_1:54878737-54878756 Msa0737600:five_prime_UTR 20.0%
!! AAAAATGCAAAAGAAATCTA+TGG - chr5_1:54878771-54878790 None:intergenic 20.0%
!!! GTTAGTTTCATGTTATTTTA+AGG + chr5_1:54878891-54878910 Msa0737600:intron 20.0%
!!! GTTGACTTTTTTTTATCATA+TGG + chr5_1:54879305-54879324 Msa0737600:intron 20.0%
!! AAAAAAATTATGTGGATGAT+TGG + chr5_1:54879554-54879573 Msa0737600:intron 20.0%
!!! AAATTTTCAAATTGGAGAAT+AGG + chr5_1:54880111-54880130 Msa0737600:CDS 20.0%
!!! AATGTGTAATTTGTAGATAA+TGG + chr5_1:54880744-54880763 Msa0737600:intron 20.0%
!!! ATTTAGTTTCATCAATAGTT+TGG + chr5_1:54881218-54881237 Msa0737600:intron 20.0%
!! ATCTTATAAGTGTTTATGTT+TGG + chr5_1:54881616-54881635 Msa0737600:intron 20.0%
!! ATAGCTTATATTAAAACAGT+TGG - chr5_1:54881734-54881753 None:intergenic 20.0%
!!! CTTTATCTAATTTTTGCAAT+TGG + chr5_1:54881999-54882018 Msa0737600:intron 20.0%
!! AGAATTAAGATATGATAGAA+GGG - chr5_1:54882499-54882518 None:intergenic 20.0%
!! AAGAATTAAGATATGATAGA+AGG - chr5_1:54882500-54882519 None:intergenic 20.0%
!! TAAATTTAAAGAGAAAGATG+AGG + chr5_1:54882550-54882569 Msa0737600:intron 20.0%
!!! TCTTAGTTTTAAGTTAGATT+TGG - chr5_1:54882746-54882765 None:intergenic 20.0%
!! GTGAAAGAACAATAAATTTA+AGG - chr5_1:54882802-54882821 None:intergenic 20.0%
!! TCAAAATAAGGAAAATGTTA+TGG - chr5_1:54882843-54882862 None:intergenic 20.0%
!! TTAATCATAAATATCAGACT+CGG + chr5_1:54882983-54883002 Msa0737600:intron 20.0%
! CTTGAAACAAAGAGAAAAAA+AGG + chr5_1:54878728-54878747 Msa0737600:five_prime_UTR 25.0%
! ATTTGCAAGAAAAAACGTTT+GGG - chr5_1:54878829-54878848 None:intergenic 25.0%
! AATTTGCAAGAAAAAACGTT+TGG - chr5_1:54878830-54878849 None:intergenic 25.0%
!!! TCATGTTATTTTAAGGATTC+TGG + chr5_1:54878898-54878917 Msa0737600:intron 25.0%
!!! TTAATTTGCCTTGAAATTCA+AGG + chr5_1:54879119-54879138 Msa0737600:intron 25.0%
!! TAATTTGCCTTGAAATTCAA+GGG + chr5_1:54879120-54879139 Msa0737600:intron 25.0%
! ATCTTAGCAAATAGAGAAAT+CGG - chr5_1:54879480-54879499 None:intergenic 25.0%
!!! TTCTCTATTTGCTAAGATTT+TGG + chr5_1:54879482-54879501 Msa0737600:intron 25.0%
! AAAATCAATTGCAAGAATTG+CGG - chr5_1:54879789-54879808 None:intergenic 25.0%
!!! GATTTTTACCTGTTTTTGTT+TGG + chr5_1:54879803-54879822 Msa0737600:intron 25.0%
!!! GAAGTCTGAAATTTTCAAAT+TGG + chr5_1:54880103-54880122 Msa0737600:CDS 25.0%
!! ATGATGACGAAAACTTTATT+AGG + chr5_1:54880342-54880361 Msa0737600:CDS 25.0%
! AAAATTGTCACCAACTAAAA+GGG - chr5_1:54880665-54880684 None:intergenic 25.0%
! TAAAATTGTCACCAACTAAA+AGG - chr5_1:54880666-54880685 None:intergenic 25.0%
! TCTAATGGTAATTTATTGCA+TGG + chr5_1:54880978-54880997 Msa0737600:intron 25.0%
!!! TTTTTTATAGAGGACAGTTA+TGG + chr5_1:54881293-54881312 Msa0737600:intron 25.0%
!!! GTTGTTTTTATAAGCTATCA+TGG + chr5_1:54881756-54881775 Msa0737600:intron 25.0%
! ACTTAGTTTATTGCCATTAA+AGG - chr5_1:54881900-54881919 None:intergenic 25.0%
! TTTAATGGCAATAAACTAAG+TGG + chr5_1:54881899-54881918 Msa0737600:intron 25.0%
! ATCCTGAAGAAATTTGATTA+CGG + chr5_1:54881944-54881963 Msa0737600:intron 25.0%
!!! GACATTTTTTTAAACTATGC+AGG + chr5_1:54882405-54882424 Msa0737600:intron 25.0%
!!! ATTTTTTTAAACTATGCAGG+TGG + chr5_1:54882408-54882427 Msa0737600:intron 25.0%
!!! TAGAATTATGCAGTTGTTTT+TGG + chr5_1:54882927-54882946 Msa0737600:intron 25.0%
ATTCCAAATCTTTCCATCAT+GGG - chr5_1:54878981-54879000 None:intergenic 30.0%
AATTCCAAATCTTTCCATCA+TGG - chr5_1:54878982-54879001 None:intergenic 30.0%
ATTTGCAAGACAAAAAGTAG+AGG - chr5_1:54879230-54879249 None:intergenic 30.0%
!!! CATTATGTACTGATTTTGGA+TGG + chr5_1:54879386-54879405 Msa0737600:intron 30.0%
TTCGATAATACGAGTAATAC+AGG - chr5_1:54879536-54879555 None:intergenic 30.0%
TCAAGTCGATTATCACAAAT+TGG - chr5_1:54879584-54879603 None:intergenic 30.0%
! TTTTTATGGCAGAGATAGAT+AGG + chr5_1:54879619-54879638 Msa0737600:intron 30.0%
AGTGATAAATGTTCATGCTA+TGG + chr5_1:54879675-54879694 Msa0737600:exon 30.0%
TTACTTACTCTTACAGATCT+TGG - chr5_1:54879763-54879782 None:intergenic 30.0%
!!! TTTACCTGTTTTTGTTTGGA+TGG + chr5_1:54879807-54879826 Msa0737600:intron 30.0%
! TTGAGTTTGAAATTCTTCAG+AGG + chr5_1:54879838-54879857 Msa0737600:intron 30.0%
TTCAGACTTCACATTATTGT+TGG - chr5_1:54880093-54880112 None:intergenic 30.0%
TTCAAATTGGAGAATAGGTT+TGG + chr5_1:54880116-54880135 Msa0737600:CDS 30.0%
! AACATTAAATCCCCATTTTG+TGG + chr5_1:54880254-54880273 Msa0737600:CDS 30.0%
! ACATTAAATCCCCATTTTGT+GGG + chr5_1:54880255-54880274 Msa0737600:CDS 30.0%
ACATTGCACGCAAAATAATT+AGG + chr5_1:54880411-54880430 Msa0737600:CDS 30.0%
TGTTCACAATCTTTCAACTT+TGG - chr5_1:54880476-54880495 None:intergenic 30.0%
CACATATATGTCTATGAGTT+AGG + chr5_1:54880554-54880573 Msa0737600:intron 30.0%
AATTACTTTCTTAGGGGAAT+TGG - chr5_1:54880910-54880929 None:intergenic 30.0%
AATTCCCCTAAGAAAGTAAT+TGG + chr5_1:54880909-54880928 Msa0737600:CDS 30.0%
TTCCTCCAATTACTTTCTTA+GGG - chr5_1:54880917-54880936 None:intergenic 30.0%
TTTCCTCCAATTACTTTCTT+AGG - chr5_1:54880918-54880937 None:intergenic 30.0%
! TTAAAGGTATGATGATCGAA+TGG + chr5_1:54881145-54881164 Msa0737600:intron 30.0%
TAGTTTCATCAATAGTTTGG+AGG + chr5_1:54881221-54881240 Msa0737600:intron 30.0%
AGTTTCATCAATAGTTTGGA+GGG + chr5_1:54881222-54881241 Msa0737600:intron 30.0%
CTAGTACATGAACTCAAATA+AGG + chr5_1:54881861-54881880 Msa0737600:intron 30.0%
AACCGTAATCAAATTTCTTC+AGG - chr5_1:54881949-54881968 None:intergenic 30.0%
! TTTTGCAATTGGATTTGTCT+AGG + chr5_1:54882010-54882029 Msa0737600:intron 30.0%
GATAAACTAACACAAGATTC+CGG + chr5_1:54882165-54882184 Msa0737600:CDS 30.0%
! TAACACCTATAATGGAAAAG+TGG + chr5_1:54882573-54882592 Msa0737600:intron 30.0%
!! TTGTACCACTTTTCCATTAT+AGG - chr5_1:54882581-54882600 None:intergenic 30.0%
GATCATTATTTGACATGCTT+AGG + chr5_1:54882693-54882712 Msa0737600:intron 30.0%
ATGCAACTACGATCAAAATA+AGG - chr5_1:54882855-54882874 None:intergenic 30.0%
! TTCCTAATGACTTGAACTTT+TGG + chr5_1:54883081-54883100 Msa0737600:intron 30.0%
AACCAAAAGTTCAAGTCATT+AGG - chr5_1:54883086-54883105 None:intergenic 30.0%
TCTTTCTACATAATCACAAG+TGG - chr5_1:54883280-54883299 None:intergenic 30.0%
!! AGCAAAGAATTTGTTAAGGA+AGG - chr5_1:54883370-54883389 None:intergenic 30.0%
TTCCTTAACAAATTCTTTGC+TGG + chr5_1:54883369-54883388 Msa0737600:three_prime_UTR 30.0%
TGCCAACCTGTTTAAATTTA+AGG - chr5_1:54883395-54883414 None:intergenic 30.0%
TGGCAACTTGTAACTAAATA+AGG + chr5_1:54883410-54883429 Msa0737600:three_prime_UTR 30.0%
TGACAGCATAATGAAGAAAA+AGG + chr5_1:54883530-54883549 Msa0737600:three_prime_UTR 30.0%
TCAACCAAACAAAGAGAGAT+AGG + chr5_1:54878869-54878888 Msa0737600:five_prime_UTR 35.0%
CTAACCTATCTCTCTTTGTT+TGG - chr5_1:54878876-54878895 None:intergenic 35.0%
! GGATTCTGGATTCTCAATTT+TGG + chr5_1:54878912-54878931 Msa0737600:intron 35.0%
!!! GGCTATGTTTGTTTTGAAAC+TGG + chr5_1:54879024-54879043 Msa0737600:intron 35.0%
CACTAAACCCTTGAATTTCA+AGG - chr5_1:54879130-54879149 None:intergenic 35.0%
!!! GGCTCATTATGTACTGATTT+TGG + chr5_1:54879382-54879401 Msa0737600:intron 35.0%
! ACAGGTTGAGATGAATTACA+AGG - chr5_1:54879426-54879445 None:intergenic 35.0%
AATTCATCTCAACCTGTGTT+AGG + chr5_1:54879429-54879448 Msa0737600:intron 35.0%
! TTGAAGAAGAGACTTGGTAA+TGG + chr5_1:54879700-54879719 Msa0737600:CDS 35.0%
AACACCATCCAAACAAAAAC+AGG - chr5_1:54879814-54879833 None:intergenic 35.0%
! GTTTGAAATTCTTCAGAGGA+CGG + chr5_1:54879842-54879861 Msa0737600:intron 35.0%
TTTAATGTTACCGCTCAAGT+TGG - chr5_1:54880243-54880262 None:intergenic 35.0%
! CATTAAATCCCCATTTTGTG+GGG + chr5_1:54880256-54880275 Msa0737600:CDS 35.0%
AAACAATTCCCCACAAAATG+GGG - chr5_1:54880267-54880286 None:intergenic 35.0%
GAAACAATTCCCCACAAAAT+GGG - chr5_1:54880268-54880287 None:intergenic 35.0%
!! TTCCTTGAAAAGGAAGCATT+GGG - chr5_1:54880290-54880309 None:intergenic 35.0%
! ATTCCTTGAAAAGGAAGCAT+TGG - chr5_1:54880291-54880310 None:intergenic 35.0%
!! AATGCTTCCTTTTCAAGGAA+TGG + chr5_1:54880290-54880309 Msa0737600:CDS 35.0%
!! ATGCTTCCTTTTCAAGGAAT+GGG + chr5_1:54880291-54880310 Msa0737600:CDS 35.0%
CACGCAAAATAATTAGGAAG+CGG + chr5_1:54880417-54880436 Msa0737600:CDS 35.0%
!!! GAGTTAGGCTGTTCTTTTTT+TGG + chr5_1:54880569-54880588 Msa0737600:intron 35.0%
! TTTCTTTGCACCCTTTTAGT+TGG + chr5_1:54880652-54880671 Msa0737600:intron 35.0%
AGAGGAAGAAATTATCAGAC+AGG + chr5_1:54880838-54880857 Msa0737600:CDS 35.0%
GAGGAAGAAATTATCAGACA+GGG + chr5_1:54880839-54880858 Msa0737600:CDS 35.0%
AGGAAGAAATTATCAGACAG+GGG + chr5_1:54880840-54880859 Msa0737600:CDS 35.0%
TCCTCCAATTACTTTCTTAG+GGG - chr5_1:54880916-54880935 None:intergenic 35.0%
!! TGCATGGAGTTCATTAGTTT+TGG + chr5_1:54880994-54881013 Msa0737600:intron 35.0%
ATATGTTCTTTGCATCCTAC+TGG + chr5_1:54881022-54881041 Msa0737600:intron 35.0%
! TGCAACTGTTGCTTCATTAA+AGG + chr5_1:54881129-54881148 Msa0737600:CDS 35.0%
GTTTCATCAATAGTTTGGAG+GGG + chr5_1:54881223-54881242 Msa0737600:intron 35.0%
TTTATAGAGGACAGTTATGG+AGG + chr5_1:54881296-54881315 Msa0737600:intron 35.0%
! CATGTTGGTGTTCTTGTTAA+GGG + chr5_1:54881348-54881367 Msa0737600:CDS 35.0%
! ATGTTGGTGTTCTTGTTAAG+GGG + chr5_1:54881349-54881368 Msa0737600:CDS 35.0%
CTTGTTAAGGGGAAAAAAGT+TGG + chr5_1:54881360-54881379 Msa0737600:CDS 35.0%
TCAAATAAGGCAATTCGAAC+AGG + chr5_1:54881874-54881893 Msa0737600:intron 35.0%
AACAGAAATCCCTGAATCTA+TGG - chr5_1:54882052-54882071 None:intergenic 35.0%
ATTCATGGTTCATGTCAACA+AGG - chr5_1:54882116-54882135 None:intergenic 35.0%
ATCAGATATAGTGTCAGCAA+GGG - chr5_1:54882148-54882167 None:intergenic 35.0%
TATCAGATATAGTGTCAGCA+AGG - chr5_1:54882149-54882168 None:intergenic 35.0%
TCAACTTCAGACACAGAAAA+TGG - chr5_1:54882294-54882313 None:intergenic 35.0%
TCAAGTCTACATAAGTCCTA+TGG - chr5_1:54882469-54882488 None:intergenic 35.0%
TAGGACTTATGTAGACTTGA+AGG + chr5_1:54882469-54882488 Msa0737600:CDS 35.0%
AGATGAGGTAACACCTATAA+TGG + chr5_1:54882565-54882584 Msa0737600:intron 35.0%
TGGTACAATATTGCCTTTAG+AGG + chr5_1:54882593-54882612 Msa0737600:intron 35.0%
!! ATTGCCTTTAGAGGTTTTGA+CGG + chr5_1:54882602-54882621 Msa0737600:intron 35.0%
!!! TGACGGGACATTTTAGTTTA+AGG + chr5_1:54882619-54882638 Msa0737600:intron 35.0%
!!! GGGACATTTTAGTTTAAGGT+TGG + chr5_1:54882623-54882642 Msa0737600:intron 35.0%
!! GTTGGATTCACTTTTGTTAC+AGG + chr5_1:54882641-54882660 Msa0737600:intron 35.0%
CCATTACAACGTATAGCTAA+TGG - chr5_1:54883048-54883067 None:intergenic 35.0%
CCATTAGCTATACGTTGTAA+TGG + chr5_1:54883045-54883064 Msa0737600:intron 35.0%
CAAAAATCTCTCCTCAACAA+AGG + chr5_1:54883143-54883162 Msa0737600:CDS 35.0%
TCTACATAATCACAAGTGGT+TGG - chr5_1:54883276-54883295 None:intergenic 35.0%
!! ACGTTGTTGACTTGTAACTA+TGG + chr5_1:54883305-54883324 Msa0737600:three_prime_UTR 35.0%
!! TGCTGGCCTTAAATTTAAAC+AGG + chr5_1:54883386-54883405 Msa0737600:three_prime_UTR 35.0%
GGCCTTAAATTTAAACAGGT+TGG + chr5_1:54883390-54883409 Msa0737600:three_prime_UTR 35.0%
CTAGATTGCTGTAATGTAAC+TGG + chr5_1:54883436-54883455 Msa0737600:three_prime_UTR 35.0%
TATCCAACTGAAGAAAAGCA+AGG - chr5_1:54883566-54883585 None:intergenic 35.0%
GCAAGAAAAAACGTTTGGGT+TGG - chr5_1:54878825-54878844 None:intergenic 40.0%
ATGTAATTGCGTACCCATGA+TGG + chr5_1:54878965-54878984 Msa0737600:intron 40.0%
! GTACCCATGATGGAAAGATT+TGG + chr5_1:54878975-54878994 Msa0737600:intron 40.0%
!!! TTCTGGGGTGTTGAATTTTG+AGG + chr5_1:54879080-54879099 Msa0737600:intron 40.0%
!! AAGAAGCACTATCCTAACAC+AGG - chr5_1:54879444-54879463 None:intergenic 40.0%
! ATGGTGTTGAAGAAGAGACT+TGG + chr5_1:54879694-54879713 Msa0737600:CDS 40.0%
!! AGAGACTTGGTAATGGATTC+AGG + chr5_1:54879707-54879726 Msa0737600:CDS 40.0%
!! GAGACTTGGTAATGGATTCA+GGG + chr5_1:54879708-54879727 Msa0737600:CDS 40.0%
!! TAATGGATTCAGGGACTATC+AGG + chr5_1:54879717-54879736 Msa0737600:CDS 40.0%
TTGGACATCTAGGTACCTTA+GGG - chr5_1:54879744-54879763 None:intergenic 40.0%
CTTACAGATCTTGGACATCT+AGG - chr5_1:54879754-54879773 None:intergenic 40.0%
! GTAGTTCAAAAGCACAAGAG+TGG - chr5_1:54879896-54879915 None:intergenic 40.0%
GAACTACTTGCATCTTTAGC+CGG + chr5_1:54879909-54879928 Msa0737600:CDS 40.0%
AACATCAGATGCATTGCTAG+AGG - chr5_1:54879964-54879983 None:intergenic 40.0%
CGAAATCGCTCTTCTGTTAA+CGG - chr5_1:54879990-54880009 None:intergenic 40.0%
ACAGAAGAGCGATTTCGTAA+TGG + chr5_1:54879993-54880012 Msa0737600:CDS 40.0%
!! AGAAACATCTTGAGAGTGCT+GGG + chr5_1:54880039-54880058 Msa0737600:CDS 40.0%
AGAAGTTTCAAACCATCACG+AGG + chr5_1:54880166-54880185 Msa0737600:CDS 40.0%
GGAAACAATTCCCCACAAAA+TGG - chr5_1:54880269-54880288 None:intergenic 40.0%
! TTCCCAATGCTTCCTTTTCA+AGG + chr5_1:54880285-54880304 Msa0737600:CDS 40.0%
ATTCCTCCCATTCCTTGAAA+AGG - chr5_1:54880300-54880319 None:intergenic 40.0%
GCAAAATAATTAGGAAGCGG+TGG + chr5_1:54880420-54880439 Msa0737600:CDS 40.0%
TTCCAATTCCAAACACTGGA+AGG + chr5_1:54880445-54880464 Msa0737600:CDS 40.0%
! AACCTTCCAGTGTTTGGAAT+TGG - chr5_1:54880450-54880469 None:intergenic 40.0%
GATTGTGAACATTCTCGCTA+TGG + chr5_1:54880485-54880504 Msa0737600:CDS 40.0%
TGAACATTCTCGCTATGGTA+AGG + chr5_1:54880490-54880509 Msa0737600:intron 40.0%
TCCCCTAAGAAAGTAATTGG+AGG + chr5_1:54880912-54880931 Msa0737600:CDS 40.0%
GTAATTGGAGGAAATAACCG+TGG + chr5_1:54880924-54880943 Msa0737600:CDS 40.0%
TGCAAAAGTTCGCGTTTCTA+AGG + chr5_1:54880953-54880972 Msa0737600:CDS 40.0%
! CGCGTTTCTAAGGATTCTAA+TGG + chr5_1:54880963-54880982 Msa0737600:CDS 40.0%
GACAAATCATCAATGCCAGT+AGG - chr5_1:54881040-54881059 None:intergenic 40.0%
TGAAGCAACAGTTGCAGTTT+CGG - chr5_1:54881125-54881144 None:intergenic 40.0%
GTGATGACTATAATAGGAGG+TGG + chr5_1:54881321-54881340 Msa0737600:CDS 40.0%
! GCATGTTGGTGTTCTTGTTA+AGG + chr5_1:54881347-54881366 Msa0737600:CDS 40.0%
AGATAAACTCGGTTTCGTGT+TGG + chr5_1:54881434-54881453 Msa0737600:CDS 40.0%
CTCTTAGCTTAGACTCTGTT+TGG + chr5_1:54881555-54881574 Msa0737600:intron 40.0%
CAATTCGAACAGGCCTTTAA+TGG + chr5_1:54881884-54881903 Msa0737600:intron 40.0%
GCAATAAACTAAGTGGCTTG+TGG + chr5_1:54881906-54881925 Msa0737600:intron 40.0%
!! AACTAAGTGGCTTGTGGTTT+TGG + chr5_1:54881912-54881931 Msa0737600:intron 40.0%
TTGGATTTGTCTAGGTCTCT+AGG + chr5_1:54882018-54882037 Msa0737600:intron 40.0%
GAAATCCCTGAATCTATGGA+GGG - chr5_1:54882048-54882067 None:intergenic 40.0%
AGAAATCCCTGAATCTATGG+AGG - chr5_1:54882049-54882068 None:intergenic 40.0%
TCCTCCTTGCTTACAAATAC+TGG + chr5_1:54882084-54882103 Msa0737600:CDS 40.0%
TCCTTGCTTACAAATACTGG+CGG + chr5_1:54882087-54882106 Msa0737600:CDS 40.0%
GTTGGAACTGGAAGGTAATA+TGG + chr5_1:54882339-54882358 Msa0737600:intron 40.0%
! ATCAGCTTCACCGTCTTTTT+AGG + chr5_1:54882364-54882383 Msa0737600:intron 40.0%
ACTTTCGCTGCCTAAAAAGA+CGG - chr5_1:54882377-54882396 None:intergenic 40.0%
!! TCTTTTTAGGCAGCGAAAGT+GGG + chr5_1:54882377-54882396 Msa0737600:intron 40.0%
!!! GTTTTGAGAATGCAGACCAT+AGG + chr5_1:54882450-54882469 Msa0737600:CDS 40.0%
!! TTGCCTTTAGAGGTTTTGAC+GGG + chr5_1:54882603-54882622 Msa0737600:intron 40.0%
! AATATCAGACTCGGTACTTG+CGG + chr5_1:54882992-54883011 Msa0737600:intron 40.0%
TACAACGTATAGCTAATGGC+CGG - chr5_1:54883044-54883063 None:intergenic 40.0%
!!! TGAACTTTTGGTTTGTGTGC+AGG + chr5_1:54883093-54883112 Msa0737600:intron 40.0%
! TGGTTTGTGTGCAGGATAAA+TGG + chr5_1:54883101-54883120 Msa0737600:intron 40.0%
!! TTTTGGCTGCACATGCTTAT+TGG + chr5_1:54883203-54883222 Msa0737600:CDS 40.0%
!! GGCCAGCAAAGAATTTGTTA+AGG - chr5_1:54883374-54883393 None:intergenic 40.0%
!! TCTCCTTGCTTTTCTTCAGT+TGG + chr5_1:54883560-54883579 Msa0737600:three_prime_UTR 40.0%
! TGGAATTTGAGATCCGATCG+TGG + chr5_1:54878995-54879014 Msa0737600:intron 45.0%
CATAGCCTAACTTCCACGAT+CGG - chr5_1:54879011-54879030 None:intergenic 45.0%
CTTGGACATCTAGGTACCTT+AGG - chr5_1:54879745-54879764 None:intergenic 45.0%
TTCAAGAAACCAGTCGAGGA+TGG + chr5_1:54879870-54879889 Msa0737600:CDS 45.0%
ATCAGATGCATTGCTAGAGG+TGG - chr5_1:54879961-54879980 None:intergenic 45.0%
! GAGAAACATCTTGAGAGTGC+TGG + chr5_1:54880038-54880057 Msa0737600:CDS 45.0%
CCTTCTTTAGCCAACTTGAG+CGG + chr5_1:54880230-54880249 Msa0737600:CDS 45.0%
!! CTTCCTTTTCAAGGAATGGG+AGG + chr5_1:54880294-54880313 Msa0737600:CDS 45.0%
GGGAGGAATGCTAGTAAGTT+AGG + chr5_1:54880311-54880330 Msa0737600:CDS 45.0%
CAAAGTTTGCACCAAACCGA+AGG + chr5_1:54880370-54880389 Msa0737600:CDS 45.0%
AGGTCTAAAAGCCTTCGGTT+TGG - chr5_1:54880384-54880403 None:intergenic 45.0%
CGTGAAGGTCTAAAAGCCTT+CGG - chr5_1:54880389-54880408 None:intergenic 45.0%
TTGCGTGCAATGTATCGTGA+AGG - chr5_1:54880404-54880423 None:intergenic 45.0%
GGACTTCCAATTCCAAACAC+TGG + chr5_1:54880441-54880460 Msa0737600:CDS 45.0%
AACGGTAAGAACAGGACTTG+CGG - chr5_1:54880614-54880633 None:intergenic 45.0%
GTGAGAAGAACGGTAAGAAC+AGG - chr5_1:54880622-54880641 None:intergenic 45.0%
AGCTGTCTTGGTGAGAAGAA+CGG - chr5_1:54880632-54880651 None:intergenic 45.0%
GGTGCAAAGAAAAGCTGTCT+TGG - chr5_1:54880644-54880663 None:intergenic 45.0%
GTCTTCCTCTTATGACTCGA+GGG - chr5_1:54880777-54880796 None:intergenic 45.0%
AGTCTTCCTCTTATGACTCG+AGG - chr5_1:54880778-54880797 None:intergenic 45.0%
AGTGTCACACTCTGTTGAAG+AGG + chr5_1:54880820-54880839 Msa0737600:CDS 45.0%
! GAACTTTTGCAGATGAGCCA+CGG - chr5_1:54880944-54880963 None:intergenic 45.0%
GCGAAACTTTACTGTACGCA+AGG - chr5_1:54881062-54881081 None:intergenic 45.0%
AGTTTCGCATCGAGTCATTC+AGG + chr5_1:54881074-54881093 Msa0737600:CDS 45.0%
GAAGCAACAGTTGCAGTTTC+GGG - chr5_1:54881124-54881143 None:intergenic 45.0%
ATAGAGGACAGTTATGGAGG+CGG + chr5_1:54881299-54881318 Msa0737600:intron 45.0%
GAGGCGGTGATGACTATAAT+AGG + chr5_1:54881315-54881334 Msa0737600:CDS 45.0%
GCGGTGATGACTATAATAGG+AGG + chr5_1:54881318-54881337 Msa0737600:CDS 45.0%
AACAGAACTCTTCGTCAGAC+TGG + chr5_1:54881390-54881409 Msa0737600:CDS 45.0%
TGAGATGCTACATGGTGAGA+AGG - chr5_1:54881504-54881523 None:intergenic 45.0%
GAACTCCCTCCATAGATTCA+GGG + chr5_1:54882040-54882059 Msa0737600:CDS 45.0%
AGGGATTTCTGTTGCCAAAC+AGG + chr5_1:54882059-54882078 Msa0737600:CDS 45.0%
GGGATTTCTGTTGCCAAACA+GGG + chr5_1:54882060-54882079 Msa0737600:CDS 45.0%
GCCAGTATTTGTAAGCAAGG+AGG - chr5_1:54882088-54882107 None:intergenic 45.0%
ACCGCCAGTATTTGTAAGCA+AGG - chr5_1:54882091-54882110 None:intergenic 45.0%
! CAAGGGAAGAAGCTGATTCA+TGG - chr5_1:54882131-54882150 None:intergenic 45.0%
TGTTCCAGCTCATAGTACTG+AGG + chr5_1:54882200-54882219 Msa0737600:CDS 45.0%
AATGCCTCAGTACTATGAGC+TGG - chr5_1:54882207-54882226 None:intergenic 45.0%
TGGTCCAGTGTTCTGATTCA+CGG - chr5_1:54882241-54882260 None:intergenic 45.0%
AGACACAGAAAATGGTCTCC+TGG - chr5_1:54882286-54882305 None:intergenic 45.0%
AGCACTTGTTCATGCAGTTG+AGG + chr5_1:54882314-54882333 Msa0737600:CDS 45.0%
GTTCATGCAGTTGAGGAAGT+TGG + chr5_1:54882321-54882340 Msa0737600:CDS 45.0%
TTGAGGAAGTTGGAACTGGA+AGG + chr5_1:54882331-54882350 Msa0737600:CDS 45.0%
!! GTCTTTTTAGGCAGCGAAAG+TGG + chr5_1:54882376-54882395 Msa0737600:intron 45.0%
TGTCCCGTCAAAACCTCTAA+AGG - chr5_1:54882609-54882628 None:intergenic 45.0%
ATCTCTCCTCAACAAAGGAG+AGG + chr5_1:54883148-54883167 Msa0737600:CDS 45.0%
TTCCTCAGGAGCTATTGGAT+AGG + chr5_1:54883179-54883198 Msa0737600:CDS 45.0%
TCCTCAGGAGCTATTGGATA+GGG + chr5_1:54883180-54883199 Msa0737600:CDS 45.0%
! GGAGCTATTGGATAGGGTTT+TGG + chr5_1:54883186-54883205 Msa0737600:CDS 45.0%
TTGATGCTTGACATGCTGCT+TGG - chr5_1:54883242-54883261 None:intergenic 45.0%
CACAAGTGGTTGGACAACAT+TGG - chr5_1:54883266-54883285 None:intergenic 45.0%
!!! TTAATTAATTAGTTTAAAAT+TGG + chr5_1:54879361-54879380 Msa0737600:intron 5.0%
GAGATCCGATCGTGGAAGTT+AGG + chr5_1:54879003-54879022 Msa0737600:intron 50.0%
TGCGTTCAAGAAACCAGTCG+AGG + chr5_1:54879866-54879885 Msa0737600:CDS 50.0%
TTTAGCCGGTGAGTTGCTGA+AGG + chr5_1:54879923-54879942 Msa0737600:CDS 50.0%
ACTCTCCTTCAGCAACTCAC+CGG - chr5_1:54879931-54879950 None:intergenic 50.0%
!! CCGCTCAAGTTGGCTAAAGA+AGG - chr5_1:54880233-54880252 None:intergenic 50.0%
TGGAGCAACCTTCCAGTGTT+TGG - chr5_1:54880456-54880475 None:intergenic 50.0%
AGGGGTTCGATGCTAACTCA+TGG + chr5_1:54880858-54880877 Msa0737600:CDS 50.0%
GGTTCGATGCTAACTCATGG+TGG + chr5_1:54880861-54880880 Msa0737600:CDS 50.0%
TCGATGCTAACTCATGGTGG+AGG + chr5_1:54880864-54880883 Msa0737600:CDS 50.0%
GGAACGTCGACGTAAAGTTC+TGG - chr5_1:54881103-54881122 None:intergenic 50.0%
ATAGGAGGTGGAGTGCATGT+TGG + chr5_1:54881333-54881352 Msa0737600:CDS 50.0%
GGAGAAGCTTGAGAAGAGCT+AGG - chr5_1:54881462-54881481 None:intergenic 50.0%
GCTTCTCCAGTTGTTTGTGC+TGG + chr5_1:54881474-54881493 Msa0737600:CDS 50.0%
GGATCACCAGCACAAACAAC+TGG - chr5_1:54881483-54881502 None:intergenic 50.0%
TGGTAGGCTGAGATGCTACA+TGG - chr5_1:54881512-54881531 None:intergenic 50.0%
ATGTAGCATCTCAGCCTACC+AGG + chr5_1:54881511-54881530 Msa0737600:CDS 50.0%
TCAACTTTCGCTCACCTGGT+AGG - chr5_1:54881528-54881547 None:intergenic 50.0%
CTGTTCAACTTTCGCTCACC+TGG - chr5_1:54881532-54881551 None:intergenic 50.0%
GGAACTCCCTCCATAGATTC+AGG + chr5_1:54882039-54882058 Msa0737600:CDS 50.0%
AAGCAAGGAGGAACCCTGTT+TGG - chr5_1:54882076-54882095 None:intergenic 50.0%
TGGAACAGAAACTAGCGCTC+CGG - chr5_1:54882187-54882206 None:intergenic 50.0%
GTTCCCGTGAATCAGAACAC+TGG + chr5_1:54882234-54882253 Msa0737600:CDS 50.0%
GGTCCAGTGTTCTGATTCAC+GGG - chr5_1:54882240-54882259 None:intergenic 50.0%
GCAGTTGAGGAAGTTGGAAC+TGG + chr5_1:54882327-54882346 Msa0737600:CDS 50.0%
TCCAATAGCTCCTGAGGAAC+TGG - chr5_1:54883178-54883197 None:intergenic 50.0%
ACCCTATCCAATAGCTCCTG+AGG - chr5_1:54883184-54883203 None:intergenic 50.0%
! TGACATGCTGCTTGGATTGG+TGG - chr5_1:54883234-54883253 None:intergenic 50.0%
! GCTTGACATGCTGCTTGGAT+TGG - chr5_1:54883237-54883256 None:intergenic 50.0%
CAGGGACTATCAGGTCCCTA+AGG + chr5_1:54879726-54879745 Msa0737600:CDS 55.0%
CTGAACTGTCAGCCTCGTGA+TGG - chr5_1:54880181-54880200 None:intergenic 55.0%
CATCACGAGGCTGACAGTTC+AGG + chr5_1:54880179-54880198 Msa0737600:CDS 55.0%
TGCGACCCTCGAGTCATAAG+AGG + chr5_1:54880769-54880788 Msa0737600:CDS 55.0%
GGTTCGACGCTGTACAAGCT+CGG - chr5_1:54882265-54882284 None:intergenic 55.0%
! AGCTTGTACAGCGTCGAACC+AGG + chr5_1:54882265-54882284 Msa0737600:CDS 55.0%
CATTCACACACCCTGCACAC+CGG + chr5_1:54883022-54883041 Msa0737600:intron 55.0%
TAGCTAATGGCCGGTGTGCA+GGG - chr5_1:54883035-54883054 None:intergenic 55.0%
ATAGCTAATGGCCGGTGTGC+AGG - chr5_1:54883036-54883055 None:intergenic 55.0%
GGCTGTCCTCTCCTTTGTTG+AGG - chr5_1:54883157-54883176 None:intergenic 55.0%
GCCAGTTCCTCAGGAGCTAT+TGG + chr5_1:54883174-54883193 Msa0737600:CDS 55.0%
CAAGAGTGGCCATCCTCGAC+TGG - chr5_1:54879882-54879901 None:intergenic 60.0%
CGACGCTGTACAAGCTCGGA+TGG - chr5_1:54882261-54882280 None:intergenic 60.0%
GAGAGGACAGCCAGTTCCTC+AGG + chr5_1:54883165-54883184 Msa0737600:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 54878692 54883586 54878692 ID=Msa0737600;Name=Msa0737600
chr5_1 mRNA 54878692 54883586 54878692 ID=Msa0737600-mRNA-1;Parent=Msa0737600;Name=Msa0737600-mRNA-1;_AED=0.10;_eAED=0.10;_QI=262|1|1|1|0.87|0.77|9|292|609
chr5_1 exon 54878692 54878890 54878692 ID=Msa0737600-mRNA-1:exon:15468;Parent=Msa0737600-mRNA-1
chr5_1 exon 54879631 54879774 54879631 ID=Msa0737600-mRNA-1:exon:15469;Parent=Msa0737600-mRNA-1
chr5_1 exon 54879858 54880506 54879858 ID=Msa0737600-mRNA-1:exon:15470;Parent=Msa0737600-mRNA-1
chr5_1 exon 54880760 54880984 54880760 ID=Msa0737600-mRNA-1:exon:15471;Parent=Msa0737600-mRNA-1
chr5_1 exon 54881071 54881150 54881071 ID=Msa0737600-mRNA-1:exon:15472;Parent=Msa0737600-mRNA-1
chr5_1 exon 54881303 54881532 54881303 ID=Msa0737600-mRNA-1:exon:15473;Parent=Msa0737600-mRNA-1
chr5_1 exon 54882032 54882352 54882032 ID=Msa0737600-mRNA-1:exon:15474;Parent=Msa0737600-mRNA-1
chr5_1 exon 54882427 54882490 54882427 ID=Msa0737600-mRNA-1:exon:15475;Parent=Msa0737600-mRNA-1
chr5_1 exon 54883115 54883586 54883115 ID=Msa0737600-mRNA-1:exon:15476;Parent=Msa0737600-mRNA-1
chr5_1 five_prime_UTR 54878692 54878890 54878692 ID=Msa0737600-mRNA-1:five_prime_utr;Parent=Msa0737600-mRNA-1
chr5_1 five_prime_UTR 54879631 54879693 54879631 ID=Msa0737600-mRNA-1:five_prime_utr;Parent=Msa0737600-mRNA-1
chr5_1 CDS 54879694 54879774 54879694 ID=Msa0737600-mRNA-1:cds;Parent=Msa0737600-mRNA-1
chr5_1 CDS 54879858 54880506 54879858 ID=Msa0737600-mRNA-1:cds;Parent=Msa0737600-mRNA-1
chr5_1 CDS 54880760 54880984 54880760 ID=Msa0737600-mRNA-1:cds;Parent=Msa0737600-mRNA-1
chr5_1 CDS 54881071 54881150 54881071 ID=Msa0737600-mRNA-1:cds;Parent=Msa0737600-mRNA-1
chr5_1 CDS 54881303 54881532 54881303 ID=Msa0737600-mRNA-1:cds;Parent=Msa0737600-mRNA-1
chr5_1 CDS 54882032 54882352 54882032 ID=Msa0737600-mRNA-1:cds;Parent=Msa0737600-mRNA-1
chr5_1 CDS 54882427 54882490 54882427 ID=Msa0737600-mRNA-1:cds;Parent=Msa0737600-mRNA-1
chr5_1 CDS 54883115 54883294 54883115 ID=Msa0737600-mRNA-1:cds;Parent=Msa0737600-mRNA-1
chr5_1 three_prime_UTR 54883295 54883586 54883295 ID=Msa0737600-mRNA-1:three_prime_utr;Parent=Msa0737600-mRNA-1
Gene Sequence

>Msa0737600

ATGGTGTTGAAGAAGAGACTTGGTAATGGATTCAGGGACTATCAGGTCCCTAAGGTACCTAGATGTCCAAGATCTGTAAGAAGGACGGTTGCGTTCAAGAAACCAGTCGAGGATGGCCACTCTTGTGCTTTTGAACTACTTGCATCTTTAGCCGGTGAGTTGCTGAAGGAGAGTGAAAGTTCCACCTCTAGCAATGCATCTGATGTTAAACCGTTAACAGAAGAGCGATTTCGTAATGGAAGTTGTGAAGAAAAGAACAGTGAGAAACATCTTGAGAGTGCTGGGACTGATTGTATACTAAAATGTATTTCTGCCAACAATAATGTGAAGTCTGAAATTTTCAAATTGGAGAATAGGTTTGGAAATCATTCTAATACTAATAGAATAGTAGAAGTTTCAAACCATCACGAGGCTGACAGTTCAGGCTTCAAGCGATTATCTGCTGTTCATTCTCCTTCTTTAGCCAACTTGAGCGGTAACATTAAATCCCCATTTTGTGGGGAATTGTTTCCCAATGCTTCCTTTTCAAGGAATGGGAGGAATGCTAGTAAGTTAGGTTTTATTGATGATGACGAAAACTTTATTAGGTGCAACAAAGTTTGCACCAAACCGAAGGCTTTTAGACCTTCACGATACATTGCACGCAAAATAATTAGGAAGCGGTGGACTTCCAATTCCAAACACTGGAAGGTTGCTCCAAAGTTGAAAGATTGTGAACATTCTCGCTATGATAATGGAATGCGACCCTCGAGTCATAAGAGGAAGACTTGTTACAATTTCGAAAGATCTCAGTGTCACACTCTGTTGAAGAGGAAGAAATTATCAGACAGGGGTTCGATGCTAACTCATGGTGGAGGATTCAGCAGTGAGAGTGTATCCAATTCCCCTAAGAAAGTAATTGGAGGAAATAACCGTGGCTCATCTGCAAAAGTTCGCGTTTCTAAGGATTCTAATGTAAAGTTTCGCATCGAGTCATTCAGGATTCCAGAACTTTACGTCGACGTTCCCGAAACTGCAACTGTTGCTTCATTAAAGAGGACAGTTATGGAGGCGGTGATGACTATAATAGGAGGTGGAGTGCATGTTGGTGTTCTTGTTAAGGGGAAAAAAGTTGGAGACGATAACAGAACTCTTCGTCAGACTGGTATATCTTGTAAAGAAAATATAGATAAACTCGGTTTCGTGTTGGAGCCTAGCTCTTCTCAAGCTTCTCCAGTTGTTTGTGCTGGTGATCCTTCTCACCATGTAGCATCTCAGCCTACCAGGTCTCTAGGAACTCCCTCCATAGATTCAGGGATTTCTGTTGCCAAACAGGGTTCCTCCTTGCTTACAAATACTGGCGGTGACCTTGTTGACATGAACCATGAATCAGCTTCTTCCCTTGCTGACACTATATCTGATAAACTAACACAAGATTCCGGAGCGCTAGTTTCTGTTCCAGCTCATAGTACTGAGGCATTAACTGTTGTTCCCGTGAATCAGAACACTGGACCATCCGAGCTTGTACAGCGTCGAACCAGGAGACCATTTTCTGTGTCTGAAGTTGAAGCACTTGTTCATGCAGTTGAGGAAGTTGGAACTGGAAGGTGGCGTGATGTAAAGTTGCGATGTTTTGAGAATGCAGACCATAGGACTTATGTAGACTTGAAGGATAAATGGAAAACTTTAGTGCACACTGCAAAAATCTCTCCTCAACAAAGGAGAGGACAGCCAGTTCCTCAGGAGCTATTGGATAGGGTTTTGGCTGCACATGCTTATTGGTCTATCCACCAATCCAAGCAGCATGTCAAGCATCAAACCAATGTTGTCCAACCACTTGTGATTATGTAG
Protein sequence

>Msa0737600

MVLKKRLGNGFRDYQVPKVPRCPRSVRRTVAFKKPVEDGHSCAFELLASLAGELLKESESSTSSNASDVKPLTEERFRNGSCEEKNSEKHLESAGTDCILKCISANNNVKSEIFKLENRFGNHSNTNRIVEVSNHHEADSSGFKRLSAVHSPSLANLSGNIKSPFCGELFPNASFSRNGRNASKLGFIDDDENFIRCNKVCTKPKAFRPSRYIARKIIRKRWTSNSKHWKVAPKLKDCEHSRYDNGMRPSSHKRKTCYNFERSQCHTLLKRKKLSDRGSMLTHGGGFSSESVSNSPKKVIGGNNRGSSAKVRVSKDSNVKFRIESFRIPELYVDVPETATVASLKRTVMEAVMTIIGGGVHVGVLVKGKKVGDDNRTLRQTGISCKENIDKLGFVLEPSSSQASPVVCAGDPSHHVASQPTRSLGTPSIDSGISVAKQGSSLLTNTGGDLVDMNHESASSLADTISDKLTQDSGALVSVPAHSTEALTVVPVNQNTGPSELVQRRTRRPFSVSEVEALVHAVEEVGTGRWRDVKLRCFENADHRTYVDLKDKWKTLVHTAKISPQQRRGQPVPQELLDRVLAAHAYWSIHQSKQHVKHQTNVVQPLVIM*