AlfalfaGEDB | Msa1229320

M. sativa cultivar zhongmu-4 / Msa1229320

KEGG: K02921
GO: -
PFAM: PF01780.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1229320	XP_034932641.1	100.000	92	0	0	1	92	48	139	2.05e-59	188

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1229320	sp\|Q9ZRS8\|RL37A_PSEMZ	97.802	91	2	0	1	91	1	91	6.61e-60	180

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1229320	M5WNW1	98.913	92	1	0	1	92	37	128	8.10e-60	188

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0027260	Msa1229320	0.830407	2.989154e-55	-8.615850e-47
Msa0049370	Msa1229320	0.806894	6.590865e-50	-8.615850e-47
Msa0122970	Msa1229320	0.808030	3.784370e-50	-8.615850e-47
Msa0128860	Msa1229320	0.804720	1.886331e-49	-8.615850e-47
Msa0140820	Msa1229320	0.825686	4.093422e-54	-8.615850e-47
Msa0140850	Msa1229320	0.820033	8.491047e-53	-8.615850e-47
Msa0174730	Msa1229320	0.802862	4.586142e-49	-8.615850e-47
Msa0189700	Msa1229320	0.814347	1.613476e-51	-8.615850e-47
Msa0229230	Msa1229320	0.826794	2.230389e-54	-8.615850e-47
Msa0229760	Msa1229320	0.807814	4.204885e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	q. start	q. end	s. start	s. end	e-value	bit score
Msa1229320	MtrunA17_Chr8g0336121	100.000	92	1	92	1	92	7.50e-63	185
Msa1229320	MtrunA17_Chr4g0055341	100.000	92	1	92	1	92	7.50e-63	185
Msa1229320	MtrunA17_Chr4g0057431	100.000	92	1	92	1	92	7.50e-63	185
Msa1229320	MtrunA17_Chr8g0336341	100.000	92	1	92	1	92	7.50e-63	185

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1229320	AT3G10950.1	93.478	92	6	0	1	92	1	92	4.50e-59	176
Msa1229320	AT3G60245.1	92.308	91	7	0	1	91	1	91	8.73e-58	172

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Find 49 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTCTTCTGCGAGTTCTG+TGG	0.586791	8_2:+5014502	Msa1229320:CDS
AAGCACCATCCGAAGGTTGA+GGG	0.541427	8_2:+5014821	Msa1229320:CDS
AATGGAAGACGAGGGAATCA+AGG	0.533008	8_2:-5012893	None:intergenic
ACAAAGAGAACCAAGAAGGC+TGG	0.580496	8_2:+5013055	Msa1229320:CDS
ACAGACAAAGAGAACCAAGA+AGG	0.579258	8_2:+5013051	Msa1229320:intron
ACAGTATGCTGTTAAGAGGA+AGG	0.590694	8_2:+5014613	Msa1229320:intron
ACCAAGAAGGCTGGTATTGT+TGG	0.440905	8_2:+5013064	Msa1229320:CDS
ACTGATTCATCATCGTAGGA+AGG	0.609651	8_2:-5015036	None:intergenic
AGACGAGGGAATCAAGGTTG+AGG	0.600033	8_2:-5012887	None:intergenic
AGAGGAAGGCTGTCGGTATT+TGG	0.231684	8_2:+5014627	Msa1229320:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCTCTCTCTCTAATTGTTAT+TGG	+	chr8_2:5012944-5012963	Msa1229320:intron	30.0%
TATTATTCATAAGGTTGCCA+AGG	-	chr8_2:5013355-5013374	None:intergenic	30.0%
AAACTATTAAGGGCTTCATT+TGG	-	chr8_2:5013422-5013441	None:intergenic	30.0%
AACCCTAACGTTAAGATATA+AGG	+	chr8_2:5013491-5013510	Msa1229320:intron	30.0%
ACCCTAACGTTAAGATATAA+GGG	+	chr8_2:5013492-5013511	Msa1229320:intron	30.0%
CAAAACCCTTAAAATACTAG+TGG	+	chr8_2:5013520-5013539	Msa1229320:intron	30.0%
TTCGCTAAGTAAATGAACTA+GGG	+	chr8_2:5013588-5013607	Msa1229320:intron	30.0%
AGAACAATGTTGTCAAATAG+TGG	+	chr8_2:5013785-5013804	Msa1229320:intron	30.0%
TAATACAGTATGCTGTTAAG+AGG	+	chr8_2:5014609-5014628	Msa1229320:intron	30.0%
AGACAAGAAAATAAACCAAG+GGG	-	chr8_2:5014730-5014749	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	5012796	5015210	5012796	ID=Msa1229320;Name=Msa1229320
chr8_2	mRNA	5012796	5015210	5012796	ID=Msa1229320-mRNA-1;Parent=Msa1229320;Name=Msa1229320-mRNA-1;_AED=0.02;_eAED=0.02;_QI=133\|1\|1\|1\|1\|1\|5\|350\|92
chr8_2	exon	5012796	5012931	5012796	ID=Msa1229320-mRNA-1:exon:1702;Parent=Msa1229320-mRNA-1
chr8_2	exon	5013055	5013094	5013055	ID=Msa1229320-mRNA-1:exon:1703;Parent=Msa1229320-mRNA-1
chr8_2	exon	5014440	5014528	5014440	ID=Msa1229320-mRNA-1:exon:1704;Parent=Msa1229320-mRNA-1
chr8_2	exon	5014617	5014699	5014617	ID=Msa1229320-mRNA-1:exon:1705;Parent=Msa1229320-mRNA-1
chr8_2	exon	5014797	5015210	5014797	ID=Msa1229320-mRNA-1:exon:1706;Parent=Msa1229320-mRNA-1
chr8_2	five_prime_UTR	5012796	5012928	5012796	ID=Msa1229320-mRNA-1:five_prime_utr;Parent=Msa1229320-mRNA-1
chr8_2	CDS	5012929	5012931	5012929	ID=Msa1229320-mRNA-1:cds;Parent=Msa1229320-mRNA-1
chr8_2	CDS	5013055	5013094	5013055	ID=Msa1229320-mRNA-1:cds;Parent=Msa1229320-mRNA-1
chr8_2	CDS	5014440	5014528	5014440	ID=Msa1229320-mRNA-1:cds;Parent=Msa1229320-mRNA-1
chr8_2	CDS	5014617	5014699	5014617	ID=Msa1229320-mRNA-1:cds;Parent=Msa1229320-mRNA-1
chr8_2	CDS	5014797	5014860	5014797	ID=Msa1229320-mRNA-1:cds;Parent=Msa1229320-mRNA-1
chr8_2	three_prime_UTR	5014861	5015210	5014861	ID=Msa1229320-mRNA-1:three_prime_utr;Parent=Msa1229320-mRNA-1

Gene Sequence	>Msa1229320 ATGACAAAGAGAACCAAGAAGGCTGGTATTGTTGGCAAATACGGCACCCGATATGGTGCTAGTTTGAGGAAGCAAATTAAGAAGATGGAAGTCAGTCAGCACAGTAAATTCTTCTGCGAGTTCTGTGGAAAGTATGCTGTTAAGAGGAAGGCTGTCGGTATTTGGGGCTGCAAAGATTGTGGAAAAGTGAAAGCTGGCGGTGCTTACACTTTGAATACTGCCAGTGCTGTAACTGTGAGAAGCACCATCCGAAGGTTGAGGGAGCAGACTGAGAGTTAG
Protein sequence	>Msa1229320 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES*