AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0518450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0518450 MtrunA17_Chr3g0130571 95.327 107 5 0 1 107 35 141 1.67e-71 209
Msa0518450 MtrunA17_Chr8g0388461 50.704 71 34 1 37 106 95 165 2.09e-19 78.2
Msa0518450 MtrunA17_Chr7g0275791 49.254 67 34 0 37 103 100 166 3.35e-17 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0518450 AT5G09250.1 53.774 106 47 1 4 107 2 107 1.44e-36 120
Msa0518450 AT5G09250.4 56.322 87 36 1 4 88 2 88 1.19e-29 103
Msa0518450 AT5G09250.3 60.606 66 26 0 42 107 45 110 1.06e-26 95.5
Msa0518450 AT5G09250.2 56.250 80 33 1 4 81 2 81 3.68e-26 93.2
Msa0518450 AT5G09250.5 56.250 80 33 1 4 81 2 81 3.68e-26 93.2
Msa0518450 AT5G09240.1 49.057 106 47 4 7 107 5 108 3.05e-25 91.7
Msa0518450 AT5G09240.2 38.806 134 47 5 7 107 5 136 2.93e-19 77.4
Msa0518450 AT4G10920.2 46.377 69 36 1 37 104 91 159 7.36e-15 66.6
Msa0518450 AT4G10920.1 46.377 69 36 1 37 104 91 159 7.36e-15 66.6
Msa0518450 AT5G09240.3 40.659 91 47 4 7 92 5 93 1.05e-14 65.1

Find 48 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAGGAATTTGTGAACTAAA+TGG 0.225137 3_4:+70283873 Msa0518450:exon
CAACCGTTTGGGCGCCAAAA+AGG 0.237445 3_4:+70282007 Msa0518450:five_prime_UTR
AGGCAACTGCTTGCCATCTT+TGG 0.270224 3_4:-70282483 None:intergenic
CAAATCTTTGAGCCTATGTT+TGG 0.324328 3_4:-70283968 None:intergenic
CTTCCATTGCACAACCGTTT+GGG 0.326727 3_4:+70281996 Msa0518450:five_prime_UTR
TCTTCCATTGCACAACCGTT+TGG 0.336129 3_4:+70281995 Msa0518450:five_prime_UTR
ATCTTCGGTGTCTTTCTTGA+CGG 0.374479 3_4:-70282252 None:intergenic
AGAGCCAGTGAGTGTGAGTC+GGG 0.382496 3_4:-70281975 None:intergenic
TTCGAGAAAATGTCTGGAAC+TGG 0.399428 3_4:+70282155 Msa0518450:exon
TGCAGTCAAGGAGAAATCTT+AGG 0.405151 3_4:+70283855 Msa0518450:CDS
GGACCTGGAATAAACAGCTT+TGG 0.407824 3_4:+70282438 Msa0518450:CDS
AGAAACCCACAGATAGTGTT+TGG 0.409549 3_4:-70283906 None:intergenic
CTCTGGTGACATCGTCTTTG+AGG 0.410093 3_4:+70282277 Msa0518450:CDS
GACCTGGAATAAACAGCTTT+GGG 0.423013 3_4:+70282439 Msa0518450:CDS
GACCCAAAGCTGTTTATTCC+AGG 0.428597 3_4:-70282441 None:intergenic
TCACACAGATTGGGAAGAAC+AGG 0.436451 3_4:+70282402 Msa0518450:intron
AAAATGTCTGGAACTGGAAA+GGG 0.461735 3_4:+70282161 Msa0518450:exon
CATGTAAAGAAAGTGTTGAT+TGG 0.468550 3_4:+70284016 Msa0518450:three_prime_UTR
AAAGATGGCAAGCAGTTGCC+TGG 0.493882 3_4:+70282485 Msa0518450:CDS
CCTATGTTTGGATCCATGTC+AGG 0.515257 3_4:-70283956 None:intergenic
TTCAGGTATCTCACTGAACA+TGG 0.517623 3_4:+70283650 Msa0518450:intron
GGAGGGTTTCCGTCAGGACC+TGG 0.520075 3_4:+70282423 Msa0518450:CDS
AGAACAGGAGGGTTTCCGTC+AGG 0.528840 3_4:+70282417 Msa0518450:CDS
TATCTCACTGAACATGGAAC+AGG 0.529561 3_4:+70283656 Msa0518450:CDS
ATGCCCCGACTCACACTCAC+TGG 0.533619 3_4:+70281971 Msa0518450:five_prime_UTR
GCGCCCAAACGGTTGTGCAA+TGG 0.539045 3_4:-70281999 None:intergenic
CTGTTTATTCCAGGTCCTGA+CGG 0.540066 3_4:-70282432 None:intergenic
GAACTGGAAAGGGGAAGAAG+AGG 0.541717 3_4:+70282171 Msa0518450:CDS
GAAAATGTCTGGAACTGGAA+AGG 0.556354 3_4:+70282160 Msa0518450:exon
ATATTAGCATTAGCAAATAA+CGG 0.562154 3_4:-70284052 None:intergenic
AGAAATTGACAATGCAGTCA+AGG 0.563704 3_4:+70283843 Msa0518450:CDS
ATCATTAGAAGCACCTGACA+TGG 0.564846 3_4:+70283943 Msa0518450:three_prime_UTR
ACTAGTCCAAACACTATCTG+TGG 0.565323 3_4:+70283900 Msa0518450:three_prime_UTR
TTGATTTCACTCGCGGTGTG+AGG 0.571554 3_4:-70282121 None:intergenic
CACAGATTGGGAAGAACAGG+AGG 0.580072 3_4:+70282405 Msa0518450:intron
AACTGGAAAGGGGAAGAAGA+GGG 0.582966 3_4:+70282172 Msa0518450:CDS
GATGTCACCAGAGTCATCTT+CGG 0.584157 3_4:-70282267 None:intergenic
AAAGACACCGAAGATGACTC+TGG 0.589702 3_4:+70282260 Msa0518450:CDS
AGATTTGAGATTTGAGCATG+TGG 0.594346 3_4:+70283984 Msa0518450:three_prime_UTR
CCTGACATGGATCCAAACAT+AGG 0.600348 3_4:+70283956 Msa0518450:three_prime_UTR
AAGAGCCAGTGAGTGTGAGT+CGG 0.605034 3_4:-70281976 None:intergenic
CTAGTCCAAACACTATCTGT+GGG 0.606049 3_4:+70283901 Msa0518450:three_prime_UTR
CAGTGTCGTCGTCGGAAGCG+TGG 0.607696 3_4:-70282205 None:intergenic
GTGAGATTCAGTGTCGTCGT+CGG 0.626224 3_4:-70282213 None:intergenic
GTGAGCGTTGATTTCACTCG+CGG 0.633705 3_4:-70282128 None:intergenic
AAATGTCTGGAACTGGAAAG+GGG 0.652792 3_4:+70282162 Msa0518450:exon
GAGCCAGTGAGTGTGAGTCG+GGG 0.676353 3_4:-70281974 None:intergenic
ACAGATTGGGAAGAACAGGA+GGG 0.709677 3_4:+70282406 Msa0518450:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTTTATGAAATCTTTTAA+TGG + chr3_4:70282571-70282590 Msa0518450:intron 15.0%
!!! TGTTTATGAAATCTTTTAAT+GGG + chr3_4:70282572-70282591 Msa0518450:intron 15.0%
!!! TTTCATAATGAGATTTTATT+AGG + chr3_4:70283132-70283151 Msa0518450:intron 15.0%
!! AAATTTCCATAAAATTGAAT+TGG - chr3_4:70283370-70283389 None:intergenic 15.0%
!!! ATTCAATTTTATGGAAATTT+TGG + chr3_4:70283370-70283389 Msa0518450:intron 15.0%
!!! TTGTTTATGAAATCTTTTAA+TGG + chr3_4:70282571-70282590 Msa0518450:intron 15.0%
!!! TGTTTATGAAATCTTTTAAT+GGG + chr3_4:70282572-70282591 Msa0518450:intron 15.0%
!!! TTTCATAATGAGATTTTATT+AGG + chr3_4:70283132-70283151 Msa0518450:intron 15.0%
!! AAATTTCCATAAAATTGAAT+TGG - chr3_4:70283370-70283389 None:intergenic 15.0%
!!! ATTCAATTTTATGGAAATTT+TGG + chr3_4:70283370-70283389 Msa0518450:intron 15.0%
!!! TTTTTTTGTTCTTGAAATCT+AGG + chr3_4:70282337-70282356 Msa0518450:intron 20.0%
!!! TTTTTTGTTCTTGAAATCTA+GGG + chr3_4:70282338-70282357 Msa0518450:intron 20.0%
!! ATCTATTCAGATAACAAATT+AGG - chr3_4:70282652-70282671 None:intergenic 20.0%
!! TTATTTGCAAACATTTAAGT+TGG + chr3_4:70283238-70283257 Msa0518450:intron 20.0%
!!! TATTTGCAAACATTTAAGTT+GGG + chr3_4:70283239-70283258 Msa0518450:intron 20.0%
!! CAAAATTGATAAACAAAATC+AGG - chr3_4:70283337-70283356 None:intergenic 20.0%
!!! TTTTCTCCAATTCAATTTTA+TGG + chr3_4:70283361-70283380 Msa0518450:intron 20.0%
!! ATATTAGCATTAGCAAATAA+CGG - chr3_4:70284055-70284074 None:intergenic 20.0%
!!! AACTTGAAAGTTTTGAATTT+TGG + chr3_4:70284080-70284099 Msa0518450:three_prime_UTR 20.0%
!!! ACTTGAAAGTTTTGAATTTT+GGG + chr3_4:70284081-70284100 Msa0518450:three_prime_UTR 20.0%
!!! TTTTTTTGTTCTTGAAATCT+AGG + chr3_4:70282337-70282356 Msa0518450:intron 20.0%
!!! TTTTTTGTTCTTGAAATCTA+GGG + chr3_4:70282338-70282357 Msa0518450:intron 20.0%
!! ATCTATTCAGATAACAAATT+AGG - chr3_4:70282652-70282671 None:intergenic 20.0%
!! TTATTTGCAAACATTTAAGT+TGG + chr3_4:70283238-70283257 Msa0518450:intron 20.0%
!!! TATTTGCAAACATTTAAGTT+GGG + chr3_4:70283239-70283258 Msa0518450:intron 20.0%
!! CAAAATTGATAAACAAAATC+AGG - chr3_4:70283337-70283356 None:intergenic 20.0%
!!! TTTTCTCCAATTCAATTTTA+TGG + chr3_4:70283361-70283380 Msa0518450:intron 20.0%
!! ATATTAGCATTAGCAAATAA+CGG - chr3_4:70284055-70284074 None:intergenic 20.0%
!!! AACTTGAAAGTTTTGAATTT+TGG + chr3_4:70284080-70284099 Msa0518450:three_prime_UTR 20.0%
!!! ACTTGAAAGTTTTGAATTTT+GGG + chr3_4:70284081-70284100 Msa0518450:three_prime_UTR 20.0%
! AACAAAAAAAACCCTAGTAA+TGG - chr3_4:70282327-70282346 None:intergenic 25.0%
! AAAGATTTCATAAACAACGA+AGG - chr3_4:70282568-70282587 None:intergenic 25.0%
!!! GATTAGGTTTTGAAATAGAA+TGG + chr3_4:70282608-70282627 Msa0518450:intron 25.0%
! AGATTCTTGAAATGATGAAT+AGG + chr3_4:70282668-70282687 Msa0518450:intron 25.0%
!!! TTGATTCTTTTGATTGAAAG+TGG + chr3_4:70283072-70283091 Msa0518450:intron 25.0%
! AAAACATAAGTTATCTTGCT+TGG + chr3_4:70283574-70283593 Msa0518450:intron 25.0%
!!! ACATTTGTTTACTTGTTTTC+AGG + chr3_4:70283633-70283652 Msa0518450:intron 25.0%
!! ATCTGAAACATGAATAGAAA+AGG - chr3_4:70283727-70283746 None:intergenic 25.0%
! TATTCATGTTTCAGATTTGT+TGG + chr3_4:70283731-70283750 Msa0518450:intron 25.0%
! TTAGGAATTTGTGAACTAAA+TGG + chr3_4:70283873-70283892 Msa0518450:exon 25.0%
! AACAAAAAAAACCCTAGTAA+TGG - chr3_4:70282327-70282346 None:intergenic 25.0%
! AAAGATTTCATAAACAACGA+AGG - chr3_4:70282568-70282587 None:intergenic 25.0%
!!! GATTAGGTTTTGAAATAGAA+TGG + chr3_4:70282608-70282627 Msa0518450:intron 25.0%
! AGATTCTTGAAATGATGAAT+AGG + chr3_4:70282668-70282687 Msa0518450:intron 25.0%
!!! TTGATTCTTTTGATTGAAAG+TGG + chr3_4:70283072-70283091 Msa0518450:intron 25.0%
! AAAACATAAGTTATCTTGCT+TGG + chr3_4:70283574-70283593 Msa0518450:intron 25.0%
!!! ACATTTGTTTACTTGTTTTC+AGG + chr3_4:70283633-70283652 Msa0518450:intron 25.0%
!! ATCTGAAACATGAATAGAAA+AGG - chr3_4:70283727-70283746 None:intergenic 25.0%
! TATTCATGTTTCAGATTTGT+TGG + chr3_4:70283731-70283750 Msa0518450:intron 25.0%
! TTAGGAATTTGTGAACTAAA+TGG + chr3_4:70283873-70283892 Msa0518450:exon 25.0%
! TCAAAACCTAGAAACCTTTT+TGG - chr3_4:70282024-70282043 None:intergenic 30.0%
TGTTAGTGGAATTGAATACA+CGG - chr3_4:70282078-70282097 None:intergenic 30.0%
!!! TCTTTCTTGACGGTTTTTTT+GGG - chr3_4:70282245-70282264 None:intergenic 30.0%
! GGGTTATTTGCTTATTGATT+AGG + chr3_4:70282592-70282611 Msa0518450:intron 30.0%
GAAATGATGAATAGGATCAT+AGG + chr3_4:70282676-70282695 Msa0518450:intron 30.0%
AACATGTTAGAGTATGTTGA+AGG - chr3_4:70282757-70282776 None:intergenic 30.0%
!!! CATCTGCTATACCATTTTTT+GGG + chr3_4:70282856-70282875 Msa0518450:intron 30.0%
!!! ATCTGCTATACCATTTTTTG+GGG + chr3_4:70282857-70282876 Msa0518450:intron 30.0%
ATGTTATCGATCTCAGATAA+TGG - chr3_4:70282896-70282915 None:intergenic 30.0%
! TTATCTGAGATCGATAACAT+AGG + chr3_4:70282896-70282915 Msa0518450:intron 30.0%
AAATCACCAATTGAATTCAC+TGG - chr3_4:70282991-70283010 None:intergenic 30.0%
TTGCTGATAATTAAGTTCAC+AGG - chr3_4:70283046-70283065 None:intergenic 30.0%
!! ATTCTTTTGATTGAAAGTGG+TGG + chr3_4:70283075-70283094 Msa0518450:intron 30.0%
GCAGTTTGTGAGAAAAATAT+AGG + chr3_4:70283175-70283194 Msa0518450:intron 30.0%
!! ACATTTAAGTTGGGAAAGTT+TGG + chr3_4:70283248-70283267 Msa0518450:intron 30.0%
! GAAAGTTTGGAAGTAGTTTT+AGG + chr3_4:70283261-70283280 Msa0518450:intron 30.0%
GTTGAAAATACTGTAGTTGT+TGG + chr3_4:70283286-70283305 Msa0518450:intron 30.0%
!! TGTTGGTTTAATCAAGTGAA+TGG + chr3_4:70283303-70283322 Msa0518450:intron 30.0%
TTAATCAAGTGAATGGACAT+TGG + chr3_4:70283310-70283329 Msa0518450:intron 30.0%
GAAATTCAAAATCCTAGTGA+TGG + chr3_4:70283423-70283442 Msa0518450:intron 30.0%
!! AAAGGTTTTTAAGAGAAGCT+TGG + chr3_4:70283447-70283466 Msa0518450:intron 30.0%
! TTCGTGAACTACATTTGTTT+TGG + chr3_4:70283481-70283500 Msa0518450:intron 30.0%
!! CATGTAAAGAAAGTGTTGAT+TGG + chr3_4:70284016-70284035 Msa0518450:three_prime_UTR 30.0%
!!! AAGTTTTGAATTTTGGGCTT+AGG + chr3_4:70284087-70284106 Msa0518450:three_prime_UTR 30.0%
! TCAAAACCTAGAAACCTTTT+TGG - chr3_4:70282024-70282043 None:intergenic 30.0%
TGTTAGTGGAATTGAATACA+CGG - chr3_4:70282078-70282097 None:intergenic 30.0%
!!! TCTTTCTTGACGGTTTTTTT+GGG - chr3_4:70282245-70282264 None:intergenic 30.0%
! GGGTTATTTGCTTATTGATT+AGG + chr3_4:70282592-70282611 Msa0518450:intron 30.0%
GAAATGATGAATAGGATCAT+AGG + chr3_4:70282676-70282695 Msa0518450:intron 30.0%
AACATGTTAGAGTATGTTGA+AGG - chr3_4:70282757-70282776 None:intergenic 30.0%
!!! CATCTGCTATACCATTTTTT+GGG + chr3_4:70282856-70282875 Msa0518450:intron 30.0%
!!! ATCTGCTATACCATTTTTTG+GGG + chr3_4:70282857-70282876 Msa0518450:intron 30.0%
ATGTTATCGATCTCAGATAA+TGG - chr3_4:70282896-70282915 None:intergenic 30.0%
! TTATCTGAGATCGATAACAT+AGG + chr3_4:70282896-70282915 Msa0518450:intron 30.0%
AAATCACCAATTGAATTCAC+TGG - chr3_4:70282991-70283010 None:intergenic 30.0%
TTGCTGATAATTAAGTTCAC+AGG - chr3_4:70283046-70283065 None:intergenic 30.0%
!! ATTCTTTTGATTGAAAGTGG+TGG + chr3_4:70283075-70283094 Msa0518450:intron 30.0%
GCAGTTTGTGAGAAAAATAT+AGG + chr3_4:70283175-70283194 Msa0518450:intron 30.0%
!! ACATTTAAGTTGGGAAAGTT+TGG + chr3_4:70283248-70283267 Msa0518450:intron 30.0%
! GAAAGTTTGGAAGTAGTTTT+AGG + chr3_4:70283261-70283280 Msa0518450:intron 30.0%
GTTGAAAATACTGTAGTTGT+TGG + chr3_4:70283286-70283305 Msa0518450:intron 30.0%
!! TGTTGGTTTAATCAAGTGAA+TGG + chr3_4:70283303-70283322 Msa0518450:intron 30.0%
TTAATCAAGTGAATGGACAT+TGG + chr3_4:70283310-70283329 Msa0518450:intron 30.0%
GAAATTCAAAATCCTAGTGA+TGG + chr3_4:70283423-70283442 Msa0518450:intron 30.0%
!! AAAGGTTTTTAAGAGAAGCT+TGG + chr3_4:70283447-70283466 Msa0518450:intron 30.0%
! TTCGTGAACTACATTTGTTT+TGG + chr3_4:70283481-70283500 Msa0518450:intron 30.0%
!! CATGTAAAGAAAGTGTTGAT+TGG + chr3_4:70284016-70284035 Msa0518450:three_prime_UTR 30.0%
!!! AAGTTTTGAATTTTGGGCTT+AGG + chr3_4:70284087-70284106 Msa0518450:three_prime_UTR 30.0%
!! ACAGTTTTCGAGAAAATGTC+TGG + chr3_4:70282149-70282168 Msa0518450:exon 35.0%
! AAAATGTCTGGAACTGGAAA+GGG + chr3_4:70282161-70282180 Msa0518450:exon 35.0%
!!! GTCTTTCTTGACGGTTTTTT+TGG - chr3_4:70282246-70282265 None:intergenic 35.0%
! AAAACCCTAGTAATGGAGTT+GGG - chr3_4:70282320-70282339 None:intergenic 35.0%
! AAAAACCCTAGTAATGGAGT+TGG - chr3_4:70282321-70282340 None:intergenic 35.0%
TGATTTCGTTTCACACAGAT+TGG + chr3_4:70282392-70282411 Msa0518450:intron 35.0%
GATTTCGTTTCACACAGATT+GGG + chr3_4:70282393-70282412 Msa0518450:intron 35.0%
! CGCGAATTTTATACCAAAGA+TGG + chr3_4:70282470-70282489 Msa0518450:CDS 35.0%
CACAGATTCATGACAAAATG+AGG - chr3_4:70282534-70282553 None:intergenic 35.0%
TTGTCATGAATCTGTGAAGA+TGG + chr3_4:70282538-70282557 Msa0518450:intron 35.0%
CCAAAAAATGGTATAGCAGA+TGG - chr3_4:70282858-70282877 None:intergenic 35.0%
!!! CCATCTGCTATACCATTTTT+TGG + chr3_4:70282855-70282874 Msa0518450:intron 35.0%
ATCGATAACATAGGTAGTAG+TGG + chr3_4:70282905-70282924 Msa0518450:intron 35.0%
! GCAATCGTGTTAAGTTGTAT+TGG + chr3_4:70283012-70283031 Msa0518450:intron 35.0%
TAAAAACCTTTGCCATCACT+AGG - chr3_4:70283438-70283457 None:intergenic 35.0%
! AATCAAGGTTTGGTAGGAAA+GGG - chr3_4:70283539-70283558 None:intergenic 35.0%
ATAAGACAGCAATCAAGGTT+TGG - chr3_4:70283549-70283568 None:intergenic 35.0%
CAACAATAAGACAGCAATCA+AGG - chr3_4:70283554-70283573 None:intergenic 35.0%
ACATAAGTTATCTTGCTTGG+TGG + chr3_4:70283577-70283596 Msa0518450:intron 35.0%
!! CATGTTTCAGATTTGTTGGT+CGG + chr3_4:70283735-70283754 Msa0518450:intron 35.0%
AGAAATTGACAATGCAGTCA+AGG + chr3_4:70283843-70283862 Msa0518450:CDS 35.0%
CAAATCTTTGAGCCTATGTT+TGG - chr3_4:70283971-70283990 None:intergenic 35.0%
! AGATTTGAGATTTGAGCATG+TGG + chr3_4:70283984-70284003 Msa0518450:three_prime_UTR 35.0%
!! ACAGTTTTCGAGAAAATGTC+TGG + chr3_4:70282149-70282168 Msa0518450:exon 35.0%
! AAAATGTCTGGAACTGGAAA+GGG + chr3_4:70282161-70282180 Msa0518450:exon 35.0%
!!! GTCTTTCTTGACGGTTTTTT+TGG - chr3_4:70282246-70282265 None:intergenic 35.0%
! AAAACCCTAGTAATGGAGTT+GGG - chr3_4:70282320-70282339 None:intergenic 35.0%
! AAAAACCCTAGTAATGGAGT+TGG - chr3_4:70282321-70282340 None:intergenic 35.0%
TGATTTCGTTTCACACAGAT+TGG + chr3_4:70282392-70282411 Msa0518450:intron 35.0%
GATTTCGTTTCACACAGATT+GGG + chr3_4:70282393-70282412 Msa0518450:intron 35.0%
! CGCGAATTTTATACCAAAGA+TGG + chr3_4:70282470-70282489 Msa0518450:CDS 35.0%
CACAGATTCATGACAAAATG+AGG - chr3_4:70282534-70282553 None:intergenic 35.0%
TTGTCATGAATCTGTGAAGA+TGG + chr3_4:70282538-70282557 Msa0518450:intron 35.0%
CCAAAAAATGGTATAGCAGA+TGG - chr3_4:70282858-70282877 None:intergenic 35.0%
!!! CCATCTGCTATACCATTTTT+TGG + chr3_4:70282855-70282874 Msa0518450:intron 35.0%
ATCGATAACATAGGTAGTAG+TGG + chr3_4:70282905-70282924 Msa0518450:intron 35.0%
! GCAATCGTGTTAAGTTGTAT+TGG + chr3_4:70283012-70283031 Msa0518450:intron 35.0%
TAAAAACCTTTGCCATCACT+AGG - chr3_4:70283438-70283457 None:intergenic 35.0%
! AATCAAGGTTTGGTAGGAAA+GGG - chr3_4:70283539-70283558 None:intergenic 35.0%
ATAAGACAGCAATCAAGGTT+TGG - chr3_4:70283549-70283568 None:intergenic 35.0%
CAACAATAAGACAGCAATCA+AGG - chr3_4:70283554-70283573 None:intergenic 35.0%
ACATAAGTTATCTTGCTTGG+TGG + chr3_4:70283577-70283596 Msa0518450:intron 35.0%
!! CATGTTTCAGATTTGTTGGT+CGG + chr3_4:70283735-70283754 Msa0518450:intron 35.0%
AGAAATTGACAATGCAGTCA+AGG + chr3_4:70283843-70283862 Msa0518450:CDS 35.0%
CAAATCTTTGAGCCTATGTT+TGG - chr3_4:70283971-70283990 None:intergenic 35.0%
! AGATTTGAGATTTGAGCATG+TGG + chr3_4:70283984-70284003 Msa0518450:three_prime_UTR 35.0%
GAATACACGGAAGCAGAAAT+TGG - chr3_4:70282065-70282084 None:intergenic 40.0%
CGTGATTTGAGAGATGTTAG+TGG - chr3_4:70282092-70282111 None:intergenic 40.0%
! TTCGAGAAAATGTCTGGAAC+TGG + chr3_4:70282155-70282174 Msa0518450:exon 40.0%
! GAAAATGTCTGGAACTGGAA+AGG + chr3_4:70282160-70282179 Msa0518450:exon 40.0%
! AAATGTCTGGAACTGGAAAG+GGG + chr3_4:70282162-70282181 Msa0518450:exon 40.0%
!!! TTCTTGACGGTTTTTTTGGG+AGG - chr3_4:70282242-70282261 None:intergenic 40.0%
!! ATCTTCGGTGTCTTTCTTGA+CGG - chr3_4:70282255-70282274 None:intergenic 40.0%
! AATGGAGTTGGGGGTTTTTA+AGG - chr3_4:70282309-70282328 None:intergenic 40.0%
! AAACCCTAGTAATGGAGTTG+GGG - chr3_4:70282319-70282338 None:intergenic 40.0%
GACCTGGAATAAACAGCTTT+GGG + chr3_4:70282439-70282458 Msa0518450:CDS 40.0%
! TTGCCTGGCAAAAAAGGTAT+CGG + chr3_4:70282500-70282519 Msa0518450:intron 40.0%
!!! AATCCGATACCTTTTTTGCC+AGG - chr3_4:70282506-70282525 None:intergenic 40.0%
!!! GCTATACCATTTTTTGGGGT+TGG + chr3_4:70282861-70282880 Msa0518450:intron 40.0%
! TAGTGGTGCATGATTTTCTC+AGG + chr3_4:70282922-70282941 Msa0518450:intron 40.0%
! AGTGGTGCATGATTTTCTCA+GGG + chr3_4:70282923-70282942 Msa0518450:intron 40.0%
ATCAGCACACACAGTACAAA+TGG - chr3_4:70282955-70282974 None:intergenic 40.0%
GTGTTGCCAGTGAATTCAAT+TGG + chr3_4:70282982-70283001 Msa0518450:intron 40.0%
TAACGAGTTCCGACATAAGT+TGG - chr3_4:70283101-70283120 None:intergenic 40.0%
CAAAATCCTAGTGATGGCAA+AGG + chr3_4:70283429-70283448 Msa0518450:intron 40.0%
AAGAGAAGCTTGGAGTATGT+TGG + chr3_4:70283457-70283476 Msa0518450:intron 40.0%
! CAATCAAGGTTTGGTAGGAA+AGG - chr3_4:70283540-70283559 None:intergenic 40.0%
! TAAGTTATCTTGCTTGGTGG+TGG + chr3_4:70283580-70283599 Msa0518450:intron 40.0%
TTCAGGTATCTCACTGAACA+TGG + chr3_4:70283650-70283669 Msa0518450:intron 40.0%
TATCTCACTGAACATGGAAC+AGG + chr3_4:70283656-70283675 Msa0518450:CDS 40.0%
TGCAGTCAAGGAGAAATCTT+AGG + chr3_4:70283855-70283874 Msa0518450:CDS 40.0%
ACTAGTCCAAACACTATCTG+TGG + chr3_4:70283900-70283919 Msa0518450:three_prime_UTR 40.0%
CTAGTCCAAACACTATCTGT+GGG + chr3_4:70283901-70283920 Msa0518450:three_prime_UTR 40.0%
AGAAACCCACAGATAGTGTT+TGG - chr3_4:70283909-70283928 None:intergenic 40.0%
!! ATCATTAGAAGCACCTGACA+TGG + chr3_4:70283943-70283962 Msa0518450:three_prime_UTR 40.0%
GAATACACGGAAGCAGAAAT+TGG - chr3_4:70282065-70282084 None:intergenic 40.0%
CGTGATTTGAGAGATGTTAG+TGG - chr3_4:70282092-70282111 None:intergenic 40.0%
! TTCGAGAAAATGTCTGGAAC+TGG + chr3_4:70282155-70282174 Msa0518450:exon 40.0%
! GAAAATGTCTGGAACTGGAA+AGG + chr3_4:70282160-70282179 Msa0518450:exon 40.0%
! AAATGTCTGGAACTGGAAAG+GGG + chr3_4:70282162-70282181 Msa0518450:exon 40.0%
!!! TTCTTGACGGTTTTTTTGGG+AGG - chr3_4:70282242-70282261 None:intergenic 40.0%
!! ATCTTCGGTGTCTTTCTTGA+CGG - chr3_4:70282255-70282274 None:intergenic 40.0%
! AATGGAGTTGGGGGTTTTTA+AGG - chr3_4:70282309-70282328 None:intergenic 40.0%
! AAACCCTAGTAATGGAGTTG+GGG - chr3_4:70282319-70282338 None:intergenic 40.0%
GACCTGGAATAAACAGCTTT+GGG + chr3_4:70282439-70282458 Msa0518450:CDS 40.0%
! TTGCCTGGCAAAAAAGGTAT+CGG + chr3_4:70282500-70282519 Msa0518450:intron 40.0%
!!! AATCCGATACCTTTTTTGCC+AGG - chr3_4:70282506-70282525 None:intergenic 40.0%
!!! GCTATACCATTTTTTGGGGT+TGG + chr3_4:70282861-70282880 Msa0518450:intron 40.0%
! TAGTGGTGCATGATTTTCTC+AGG + chr3_4:70282922-70282941 Msa0518450:intron 40.0%
! AGTGGTGCATGATTTTCTCA+GGG + chr3_4:70282923-70282942 Msa0518450:intron 40.0%
ATCAGCACACACAGTACAAA+TGG - chr3_4:70282955-70282974 None:intergenic 40.0%
GTGTTGCCAGTGAATTCAAT+TGG + chr3_4:70282982-70283001 Msa0518450:intron 40.0%
TAACGAGTTCCGACATAAGT+TGG - chr3_4:70283101-70283120 None:intergenic 40.0%
CAAAATCCTAGTGATGGCAA+AGG + chr3_4:70283429-70283448 Msa0518450:intron 40.0%
AAGAGAAGCTTGGAGTATGT+TGG + chr3_4:70283457-70283476 Msa0518450:intron 40.0%
! CAATCAAGGTTTGGTAGGAA+AGG - chr3_4:70283540-70283559 None:intergenic 40.0%
! TAAGTTATCTTGCTTGGTGG+TGG + chr3_4:70283580-70283599 Msa0518450:intron 40.0%
TTCAGGTATCTCACTGAACA+TGG + chr3_4:70283650-70283669 Msa0518450:intron 40.0%
TATCTCACTGAACATGGAAC+AGG + chr3_4:70283656-70283675 Msa0518450:CDS 40.0%
TGCAGTCAAGGAGAAATCTT+AGG + chr3_4:70283855-70283874 Msa0518450:CDS 40.0%
ACTAGTCCAAACACTATCTG+TGG + chr3_4:70283900-70283919 Msa0518450:three_prime_UTR 40.0%
CTAGTCCAAACACTATCTGT+GGG + chr3_4:70283901-70283920 Msa0518450:three_prime_UTR 40.0%
AGAAACCCACAGATAGTGTT+TGG - chr3_4:70283909-70283928 None:intergenic 40.0%
!! ATCATTAGAAGCACCTGACA+TGG + chr3_4:70283943-70283962 Msa0518450:three_prime_UTR 40.0%
TCTTCCATTGCACAACCGTT+TGG + chr3_4:70281995-70282014 Msa0518450:five_prime_UTR 45.0%
CTTCCATTGCACAACCGTTT+GGG + chr3_4:70281996-70282015 Msa0518450:five_prime_UTR 45.0%
!! AAACCTTTTTGGCGCCCAAA+CGG - chr3_4:70282013-70282032 None:intergenic 45.0%
AACTGGAAAGGGGAAGAAGA+GGG + chr3_4:70282172-70282191 Msa0518450:CDS 45.0%
AAAGACACCGAAGATGACTC+TGG + chr3_4:70282260-70282279 Msa0518450:CDS 45.0%
GATGTCACCAGAGTCATCTT+CGG - chr3_4:70282270-70282289 None:intergenic 45.0%
AAACCCCCAACTCCATTACT+AGG + chr3_4:70282312-70282331 Msa0518450:intron 45.0%
AACCCCCAACTCCATTACTA+GGG + chr3_4:70282313-70282332 Msa0518450:intron 45.0%
! AACCCTAGTAATGGAGTTGG+GGG - chr3_4:70282318-70282337 None:intergenic 45.0%
TCACACAGATTGGGAAGAAC+AGG + chr3_4:70282402-70282421 Msa0518450:intron 45.0%
ACAGATTGGGAAGAACAGGA+GGG + chr3_4:70282406-70282425 Msa0518450:intron 45.0%
CTGTTTATTCCAGGTCCTGA+CGG - chr3_4:70282435-70282454 None:intergenic 45.0%
GGACCTGGAATAAACAGCTT+TGG + chr3_4:70282438-70282457 Msa0518450:CDS 45.0%
GACCCAAAGCTGTTTATTCC+AGG - chr3_4:70282444-70282463 None:intergenic 45.0%
AAGCAGTTGCCTGGCAAAAA+AGG + chr3_4:70282494-70282513 Msa0518450:CDS 45.0%
CTGTCAATCACGTGCTATAG+CGG + chr3_4:70282798-70282817 Msa0518450:intron 45.0%
AGAAATGCCACTACTCTCGA+AGG - chr3_4:70282834-70282853 None:intergenic 45.0%
GTAGCACCAACCCCAAAAAA+TGG - chr3_4:70282870-70282889 None:intergenic 45.0%
AAGTGGTGGCCAACTTATGT+CGG + chr3_4:70283089-70283108 Msa0518450:intron 45.0%
GTAGGAAAGGGAAAGGGAAA+GGG - chr3_4:70283527-70283546 None:intergenic 45.0%
! GGTTTGGTAGGAAAGGGAAA+GGG - chr3_4:70283533-70283552 None:intergenic 45.0%
! AGGTTTGGTAGGAAAGGGAA+AGG - chr3_4:70283534-70283553 None:intergenic 45.0%
! GACAGCAATCAAGGTTTGGT+AGG - chr3_4:70283545-70283564 None:intergenic 45.0%
!! AGATTTGTTGGTCGGTCAAC+AGG + chr3_4:70283743-70283762 Msa0518450:intron 45.0%
TCTTTCTCTTGTGTGTGCAG+TGG + chr3_4:70283797-70283816 Msa0518450:intron 45.0%
CCTATGTTTGGATCCATGTC+AGG - chr3_4:70283959-70283978 None:intergenic 45.0%
CCTGACATGGATCCAAACAT+AGG + chr3_4:70283956-70283975 Msa0518450:three_prime_UTR 45.0%
TCTTCCATTGCACAACCGTT+TGG + chr3_4:70281995-70282014 Msa0518450:five_prime_UTR 45.0%
CTTCCATTGCACAACCGTTT+GGG + chr3_4:70281996-70282015 Msa0518450:five_prime_UTR 45.0%
!! AAACCTTTTTGGCGCCCAAA+CGG - chr3_4:70282013-70282032 None:intergenic 45.0%
AACTGGAAAGGGGAAGAAGA+GGG + chr3_4:70282172-70282191 Msa0518450:CDS 45.0%
AAAGACACCGAAGATGACTC+TGG + chr3_4:70282260-70282279 Msa0518450:CDS 45.0%
GATGTCACCAGAGTCATCTT+CGG - chr3_4:70282270-70282289 None:intergenic 45.0%
AAACCCCCAACTCCATTACT+AGG + chr3_4:70282312-70282331 Msa0518450:intron 45.0%
AACCCCCAACTCCATTACTA+GGG + chr3_4:70282313-70282332 Msa0518450:intron 45.0%
! AACCCTAGTAATGGAGTTGG+GGG - chr3_4:70282318-70282337 None:intergenic 45.0%
TCACACAGATTGGGAAGAAC+AGG + chr3_4:70282402-70282421 Msa0518450:intron 45.0%
ACAGATTGGGAAGAACAGGA+GGG + chr3_4:70282406-70282425 Msa0518450:intron 45.0%
CTGTTTATTCCAGGTCCTGA+CGG - chr3_4:70282435-70282454 None:intergenic 45.0%
GGACCTGGAATAAACAGCTT+TGG + chr3_4:70282438-70282457 Msa0518450:CDS 45.0%
GACCCAAAGCTGTTTATTCC+AGG - chr3_4:70282444-70282463 None:intergenic 45.0%
AAGCAGTTGCCTGGCAAAAA+AGG + chr3_4:70282494-70282513 Msa0518450:CDS 45.0%
CTGTCAATCACGTGCTATAG+CGG + chr3_4:70282798-70282817 Msa0518450:intron 45.0%
AGAAATGCCACTACTCTCGA+AGG - chr3_4:70282834-70282853 None:intergenic 45.0%
GTAGCACCAACCCCAAAAAA+TGG - chr3_4:70282870-70282889 None:intergenic 45.0%
AAGTGGTGGCCAACTTATGT+CGG + chr3_4:70283089-70283108 Msa0518450:intron 45.0%
GTAGGAAAGGGAAAGGGAAA+GGG - chr3_4:70283527-70283546 None:intergenic 45.0%
! GGTTTGGTAGGAAAGGGAAA+GGG - chr3_4:70283533-70283552 None:intergenic 45.0%
! AGGTTTGGTAGGAAAGGGAA+AGG - chr3_4:70283534-70283553 None:intergenic 45.0%
! GACAGCAATCAAGGTTTGGT+AGG - chr3_4:70283545-70283564 None:intergenic 45.0%
!! AGATTTGTTGGTCGGTCAAC+AGG + chr3_4:70283743-70283762 Msa0518450:intron 45.0%
TCTTTCTCTTGTGTGTGCAG+TGG + chr3_4:70283797-70283816 Msa0518450:intron 45.0%
CCTATGTTTGGATCCATGTC+AGG - chr3_4:70283959-70283978 None:intergenic 45.0%
CCTGACATGGATCCAAACAT+AGG + chr3_4:70283956-70283975 Msa0518450:three_prime_UTR 45.0%
AAGAGCCAGTGAGTGTGAGT+CGG - chr3_4:70281979-70281998 None:intergenic 50.0%
TGGGCGCCAAAAAGGTTTCT+AGG + chr3_4:70282015-70282034 Msa0518450:intron 50.0%
TTGATTTCACTCGCGGTGTG+AGG - chr3_4:70282124-70282143 None:intergenic 50.0%
!! GTGAGCGTTGATTTCACTCG+CGG - chr3_4:70282131-70282150 None:intergenic 50.0%
GAACTGGAAAGGGGAAGAAG+AGG + chr3_4:70282171-70282190 Msa0518450:CDS 50.0%
GTGAGATTCAGTGTCGTCGT+CGG - chr3_4:70282216-70282235 None:intergenic 50.0%
CTCTGGTGACATCGTCTTTG+AGG + chr3_4:70282277-70282296 Msa0518450:CDS 50.0%
!! GGTGACATCGTCTTTGAGGT+AGG + chr3_4:70282281-70282300 Msa0518450:intron 50.0%
CACAGATTGGGAAGAACAGG+AGG + chr3_4:70282405-70282424 Msa0518450:intron 50.0%
AGGCAACTGCTTGCCATCTT+TGG - chr3_4:70282486-70282505 None:intergenic 50.0%
AAAGATGGCAAGCAGTTGCC+TGG + chr3_4:70282485-70282504 Msa0518450:CDS 50.0%
GGTAGGAAAGGGAAAGGGAA+AGG - chr3_4:70283528-70283547 None:intergenic 50.0%
AAGAGCCAGTGAGTGTGAGT+CGG - chr3_4:70281979-70281998 None:intergenic 50.0%
TGGGCGCCAAAAAGGTTTCT+AGG + chr3_4:70282015-70282034 Msa0518450:intron 50.0%
TTGATTTCACTCGCGGTGTG+AGG - chr3_4:70282124-70282143 None:intergenic 50.0%
!! GTGAGCGTTGATTTCACTCG+CGG - chr3_4:70282131-70282150 None:intergenic 50.0%
GAACTGGAAAGGGGAAGAAG+AGG + chr3_4:70282171-70282190 Msa0518450:CDS 50.0%
GTGAGATTCAGTGTCGTCGT+CGG - chr3_4:70282216-70282235 None:intergenic 50.0%
CTCTGGTGACATCGTCTTTG+AGG + chr3_4:70282277-70282296 Msa0518450:CDS 50.0%
!! GGTGACATCGTCTTTGAGGT+AGG + chr3_4:70282281-70282300 Msa0518450:intron 50.0%
CACAGATTGGGAAGAACAGG+AGG + chr3_4:70282405-70282424 Msa0518450:intron 50.0%
AGGCAACTGCTTGCCATCTT+TGG - chr3_4:70282486-70282505 None:intergenic 50.0%
AAAGATGGCAAGCAGTTGCC+TGG + chr3_4:70282485-70282504 Msa0518450:CDS 50.0%
GGTAGGAAAGGGAAAGGGAA+AGG - chr3_4:70283528-70283547 None:intergenic 50.0%
AGAGCCAGTGAGTGTGAGTC+GGG - chr3_4:70281978-70281997 None:intergenic 55.0%
CAACCGTTTGGGCGCCAAAA+AGG + chr3_4:70282007-70282026 Msa0518450:five_prime_UTR 55.0%
AGAACAGGAGGGTTTCCGTC+AGG + chr3_4:70282417-70282436 Msa0518450:CDS 55.0%
AGCGTGACCTTCGAGAGTAG+TGG + chr3_4:70282824-70282843 Msa0518450:intron 55.0%
AGAGCCAGTGAGTGTGAGTC+GGG - chr3_4:70281978-70281997 None:intergenic 55.0%
CAACCGTTTGGGCGCCAAAA+AGG + chr3_4:70282007-70282026 Msa0518450:five_prime_UTR 55.0%
AGAACAGGAGGGTTTCCGTC+AGG + chr3_4:70282417-70282436 Msa0518450:CDS 55.0%
AGCGTGACCTTCGAGAGTAG+TGG + chr3_4:70282824-70282843 Msa0518450:intron 55.0%
ATGCCCCGACTCACACTCAC+TGG + chr3_4:70281971-70281990 Msa0518450:five_prime_UTR 60.0%
GAGCCAGTGAGTGTGAGTCG+GGG - chr3_4:70281977-70281996 None:intergenic 60.0%
GCGCCCAAACGGTTGTGCAA+TGG - chr3_4:70282002-70282021 None:intergenic 60.0%
ATGCCCCGACTCACACTCAC+TGG + chr3_4:70281971-70281990 Msa0518450:five_prime_UTR 60.0%
GAGCCAGTGAGTGTGAGTCG+GGG - chr3_4:70281977-70281996 None:intergenic 60.0%
GCGCCCAAACGGTTGTGCAA+TGG - chr3_4:70282002-70282021 None:intergenic 60.0%
CAGTGTCGTCGTCGGAAGCG+TGG - chr3_4:70282208-70282227 None:intergenic 65.0%
GGAGGGTTTCCGTCAGGACC+TGG + chr3_4:70282423-70282442 Msa0518450:CDS 65.0%
CAGTGTCGTCGTCGGAAGCG+TGG - chr3_4:70282208-70282227 None:intergenic 65.0%
GGAGGGTTTCCGTCAGGACC+TGG + chr3_4:70282423-70282442 Msa0518450:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 70281966 70284121 70281966 ID=Msa0518450;Name=Msa0518450
chr3_4 mRNA 70281966 70284121 70281966 ID=Msa0518450-mRNA-1;Parent=Msa0518450;Name=Msa0518450-mRNA-1;_AED=0.31;_eAED=0.31;_QI=109|1|1|1|0.75|0.6|5|245|107
chr3_4 exon 70281966 70282028 70281966 ID=Msa0518450-mRNA-1:exon:18919;Parent=Msa0518450-mRNA-1
chr3_4 exon 70282118 70282298 70282118 ID=Msa0518450-mRNA-1:exon:18920;Parent=Msa0518450-mRNA-1
chr3_4 exon 70282410 70282515 70282410 ID=Msa0518450-mRNA-1:exon:18921;Parent=Msa0518450-mRNA-1
chr3_4 exon 70283655 70283677 70283655 ID=Msa0518450-mRNA-1:exon:18922;Parent=Msa0518450-mRNA-1
chr3_4 exon 70283817 70284121 70283817 ID=Msa0518450-mRNA-1:exon:18923;Parent=Msa0518450-mRNA-1
chr3_4 five_prime_UTR 70281966 70282028 70281966 ID=Msa0518450-mRNA-1:five_prime_utr;Parent=Msa0518450-mRNA-1
chr3_4 five_prime_UTR 70282118 70282163 70282118 ID=Msa0518450-mRNA-1:five_prime_utr;Parent=Msa0518450-mRNA-1
chr3_4 CDS 70282164 70282298 70282164 ID=Msa0518450-mRNA-1:cds;Parent=Msa0518450-mRNA-1
chr3_4 CDS 70282410 70282515 70282410 ID=Msa0518450-mRNA-1:cds;Parent=Msa0518450-mRNA-1
chr3_4 CDS 70283655 70283677 70283655 ID=Msa0518450-mRNA-1:cds;Parent=Msa0518450-mRNA-1
chr3_4 CDS 70283817 70283876 70283817 ID=Msa0518450-mRNA-1:cds;Parent=Msa0518450-mRNA-1
chr3_4 three_prime_UTR 70283877 70284121 70283877 ID=Msa0518450-mRNA-1:three_prime_utr;Parent=Msa0518450-mRNA-1
Gene Sequence

>Msa0518450

ATGTCTGGAACTGGAAAGGGGAAGAAGAGGGAAGAACTCGACCACGCTTCCGACGACGACACTGAATCTCACGCGCCTCCCAAAAAAACCGTCAAGAAAGACACCGAAGATGACTCTGGTGACATCGTCTTTGAGATTGGGAAGAACAGGAGGGTTTCCGTCAGGACCTGGAATAAACAGCTTTGGGTCGACATTCGCGAATTTTATACCAAAGATGGCAAGCAGTTGCCTGGCAAAAAAGGTATCTCACTGAACATGGAACAGTGGACTGTGCTTCGTGATCACGTTGAAGAAATTGACAATGCAGTCAAGGAGAAATCTTAG

Protein sequence

>Msa0518450

MSGTGKGKKREELDHASDDDTESHAPPKKTVKKDTEDDSGDIVFEIGKNRRVSVRTWNKQLWVDIREFYTKDGKQLPGKKGISLNMEQWTVLRDHVEEIDNAVKEKS*