Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1255080 | PNX55890.1 | 90.323 | 124 | 12 | 0 | 9 | 132 | 2 | 125 | 2.00e-77 | 240 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1255080 | sp|Q76CU2|PDR1_TOBAC | 75.397 | 126 | 31 | 0 | 7 | 132 | 216 | 341 | 5.38e-60 | 207 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1255080 | A0A2K3JPE2 | 90.323 | 124 | 12 | 0 | 9 | 132 | 2 | 125 | 9.57e-78 | 240 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015390 | Msa1255080 | 0.807018 | 6.205390e-50 | -8.615850e-47 |
| Msa0079180 | Msa1255080 | 0.809231 | 2.096139e-50 | -8.615850e-47 |
| Msa0100000 | Msa1255080 | 0.822658 | 2.105283e-53 | -8.615850e-47 |
| Msa0115270 | Msa1255080 | 0.815524 | 8.844874e-52 | -8.615850e-47 |
| Msa0663920 | Msa1255080 | 0.805930 | 1.052261e-49 | -8.615850e-47 |
| Msa0701010 | Msa1255080 | 0.823011 | 1.742237e-53 | -8.615850e-47 |
| Msa0755180 | Msa1255080 | 0.810846 | 9.408361e-51 | -8.615850e-47 |
| Msa0773180 | Msa1255080 | 0.810348 | 1.205644e-50 | -8.615850e-47 |
| Msa0777230 | Msa1255080 | 0.809385 | 1.942798e-50 | -8.615850e-47 |
| Msa0171540 | Msa1255080 | 0.808315 | 3.290444e-50 | -8.615850e-47 |
| Msa0179430 | Msa1255080 | 0.800109 | 1.681362e-48 | -8.615850e-47 |
| Msa0208090 | Msa1255080 | 0.818442 | 1.956537e-52 | -8.615850e-47 |
| Msa1255080 | Msa1277660 | 0.801861 | 7.373332e-49 | -8.615850e-47 |
| Msa1255080 | Msa1284680 | 0.817868 | 2.637034e-52 | -8.615850e-47 |
| Msa1255080 | Msa1286800 | 0.804191 | 2.432197e-49 | -8.615850e-47 |
| Msa1255080 | Msa1287190 | 0.811837 | 5.734140e-51 | -8.615850e-47 |
| Msa1255080 | Msa1313140 | 0.817613 | 3.011087e-52 | -8.615850e-47 |
| Msa1255080 | Msa1353470 | 0.812474 | 4.163251e-51 | -8.615850e-47 |
| Msa1255080 | Msa1379500 | 0.807488 | 4.932673e-50 | -8.615850e-47 |
| Msa1255080 | Msa1394730 | 0.807574 | 4.730092e-50 | -8.615850e-47 |
| Msa1255080 | Msa1423870 | 0.811920 | 5.500706e-51 | -8.615850e-47 |
| Msa0388950 | Msa1255080 | 0.815970 | 7.037660e-52 | -8.615850e-47 |
| Msa0402790 | Msa1255080 | 0.808892 | 2.477596e-50 | -8.615850e-47 |
| Msa0424320 | Msa1255080 | 0.801716 | 7.896563e-49 | -8.615850e-47 |
| Msa0438200 | Msa1255080 | 0.811919 | 5.503039e-51 | -8.615850e-47 |
| Msa1000890 | Msa1255080 | 0.802719 | 4.909977e-49 | -8.615850e-47 |
| Msa1000900 | Msa1255080 | 0.813490 | 2.492567e-51 | -8.615850e-47 |
| Msa1014540 | Msa1255080 | 0.813287 | 2.762449e-51 | -8.615850e-47 |
| Msa0257460 | Msa1255080 | 0.819074 | 1.405656e-52 | -8.615850e-47 |
| Msa0275000 | Msa1255080 | 0.939069 | 2.359321e-99 | -8.615850e-47 |
| Msa0321310 | Msa1255080 | 0.968570 | 7.262569e-129 | -8.615850e-47 |
| Msa1113170 | Msa1255080 | 0.807247 | 5.549257e-50 | -8.615850e-47 |
| Msa1121490 | Msa1255080 | 0.806860 | 6.698629e-50 | -8.615850e-47 |
| Msa1137570 | Msa1255080 | 0.817243 | 3.648855e-52 | -8.615850e-47 |
| Msa1186950 | Msa1255080 | -0.808227 | 3.435531e-50 | -8.615850e-47 |
| Msa1193290 | Msa1255080 | 0.800453 | 1.430776e-48 | -8.615850e-47 |
| Msa0523940 | Msa1255080 | 0.804166 | 2.461226e-49 | -8.615850e-47 |
| Msa0529040 | Msa1255080 | 0.842335 | 2.754086e-58 | -8.615850e-47 |
| Msa0562440 | Msa1255080 | 0.818745 | 1.669909e-52 | -8.615850e-47 |
| Msa0592440 | Msa1255080 | 0.811523 | 6.710826e-51 | -8.615850e-47 |
| Msa0849030 | Msa1255080 | 0.815091 | 1.103910e-51 | -8.615850e-47 |
| Msa0868700 | Msa1255080 | 0.805549 | 1.265316e-49 | -8.615850e-47 |
| Msa0897330 | Msa1255080 | 0.804760 | 1.850135e-49 | -8.615850e-47 |
| Msa0936300 | Msa1255080 | 0.822435 | 2.372393e-53 | -8.615850e-47 |
| Msa0962840 | Msa1255080 | 0.804601 | 1.997563e-49 | -8.615850e-47 |
| Msa0966750 | Msa1255080 | 0.826429 | 2.726644e-54 | -8.615850e-47 |
| Msa0973100 | Msa1255080 | 0.821368 | 4.190073e-53 | -8.615850e-47 |
| Msa0974070 | Msa1255080 | 0.801586 | 8.396311e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1255080 | MtrunA17_Chr7g0262231 | 69.189 | 185 | 47 | 1 | 7 | 181 | 202 | 386 | 3.47e-76 | 250 |
| Msa1255080 | MtrunA17_Chr7g0262241 | 89.683 | 126 | 13 | 0 | 7 | 132 | 202 | 327 | 3.21e-72 | 239 |
| Msa1255080 | MtrunA17_Chr7g0261951 | 57.333 | 225 | 75 | 2 | 7 | 221 | 202 | 415 | 4.42e-72 | 238 |
| Msa1255080 | MtrunA17_Chr7g0261981 | 66.486 | 185 | 52 | 1 | 7 | 181 | 202 | 386 | 9.24e-72 | 237 |
| Msa1255080 | MtrunA17_Chr7g0261971 | 63.784 | 185 | 57 | 1 | 7 | 181 | 198 | 382 | 1.34e-69 | 231 |
| Msa1255080 | MtrunA17_Chr7g0262261 | 76.984 | 126 | 29 | 0 | 7 | 132 | 173 | 298 | 1.55e-63 | 214 |
| Msa1255080 | MtrunA17_Chr2g0332211 | 76.190 | 126 | 30 | 0 | 7 | 132 | 288 | 413 | 1.09e-61 | 208 |
| Msa1255080 | MtrunA17_Chr7g0262221 | 60.541 | 185 | 45 | 2 | 7 | 181 | 203 | 369 | 2.20e-61 | 207 |
| Msa1255080 | MtrunA17_Chr4g0004021 | 76.190 | 126 | 30 | 0 | 7 | 132 | 211 | 336 | 3.02e-61 | 207 |
| Msa1255080 | MtrunA17_Chr4g0003981 | 76.190 | 126 | 30 | 0 | 7 | 132 | 213 | 338 | 3.26e-61 | 207 |
| Msa1255080 | MtrunA17_Chr2g0332221 | 75.397 | 126 | 31 | 0 | 7 | 132 | 207 | 332 | 4.89e-61 | 206 |
| Msa1255080 | MtrunA17_Chr2g0332241 | 75.397 | 126 | 31 | 0 | 7 | 132 | 207 | 332 | 5.29e-61 | 206 |
| Msa1255080 | MtrunA17_Chr4g0003971 | 74.194 | 124 | 32 | 0 | 9 | 132 | 203 | 326 | 2.05e-58 | 199 |
| Msa1255080 | MtrunA17_Chr3g0138261 | 69.841 | 126 | 38 | 0 | 7 | 132 | 206 | 331 | 5.01e-58 | 198 |
| Msa1255080 | MtrunA17_Chr1g0148841 | 70.161 | 124 | 37 | 0 | 9 | 132 | 208 | 331 | 2.76e-55 | 190 |
| Msa1255080 | MtrunA17_Chr1g0171351 | 68.254 | 126 | 40 | 0 | 7 | 132 | 216 | 341 | 1.92e-54 | 187 |
| Msa1255080 | MtrunA17_Chr0c20g0493841 | 65.079 | 126 | 44 | 0 | 7 | 132 | 208 | 333 | 8.89e-54 | 186 |
| Msa1255080 | MtrunA17_Chr1g0198291 | 68.254 | 126 | 40 | 0 | 7 | 132 | 229 | 354 | 1.06e-52 | 182 |
| Msa1255080 | MtrunA17_Chr7g0262251 | 52.973 | 185 | 59 | 2 | 7 | 181 | 215 | 381 | 1.80e-52 | 182 |
| Msa1255080 | MtrunA17_Chr8g0340651 | 61.905 | 126 | 48 | 0 | 7 | 132 | 218 | 343 | 1.19e-51 | 179 |
| Msa1255080 | MtrunA17_Chr2g0331081 | 61.111 | 126 | 49 | 0 | 7 | 132 | 219 | 344 | 3.74e-51 | 178 |
| Msa1255080 | MtrunA17_Chr4g0062871 | 60.317 | 126 | 50 | 0 | 7 | 132 | 190 | 315 | 2.05e-50 | 176 |
| Msa1255080 | MtrunA17_Chr1g0148811 | 63.710 | 124 | 45 | 0 | 9 | 132 | 196 | 319 | 9.79e-50 | 174 |
| Msa1255080 | MtrunA17_Chr7g0265971 | 61.240 | 129 | 49 | 1 | 5 | 132 | 215 | 343 | 1.15e-48 | 171 |
| Msa1255080 | MtrunA17_Chr7g0265961 | 63.492 | 126 | 46 | 0 | 7 | 132 | 222 | 347 | 2.28e-48 | 170 |
| Msa1255080 | MtrunA17_Chr7g0265981 | 61.111 | 126 | 49 | 0 | 7 | 132 | 224 | 349 | 3.25e-48 | 170 |
| Msa1255080 | MtrunA17_Chr4g0069211 | 62.393 | 117 | 44 | 0 | 7 | 123 | 207 | 323 | 2.61e-47 | 167 |
| Msa1255080 | MtrunA17_Chr7g0266001 | 61.111 | 126 | 49 | 0 | 7 | 132 | 103 | 228 | 2.78e-47 | 166 |
| Msa1255080 | MtrunA17_Chr3g0104621 | 54.032 | 124 | 56 | 1 | 9 | 132 | 98 | 220 | 1.34e-39 | 145 |
| Msa1255080 | MtrunA17_Chr5g0429871 | 51.181 | 127 | 61 | 1 | 7 | 132 | 18 | 144 | 1.38e-38 | 142 |
| Msa1255080 | MtrunA17_Chr8g0390451 | 53.125 | 64 | 30 | 0 | 42 | 105 | 23 | 86 | 3.13e-19 | 79.7 |
| Msa1255080 | MtrunA17_Chr7g0262321 | 53.846 | 65 | 12 | 1 | 68 | 132 | 4 | 50 | 9.46e-14 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1255080 | AT1G15520.2 | 72.581 | 124 | 34 | 0 | 9 | 132 | 211 | 334 | 3.72e-60 | 204 |
| Msa1255080 | AT1G15520.1 | 72.581 | 124 | 34 | 0 | 9 | 132 | 211 | 334 | 4.57e-60 | 204 |
| Msa1255080 | AT3G16340.2 | 65.079 | 126 | 44 | 0 | 7 | 132 | 202 | 327 | 4.87e-53 | 184 |
| Msa1255080 | AT3G16340.1 | 65.079 | 126 | 44 | 0 | 7 | 132 | 202 | 327 | 5.01e-53 | 184 |
| Msa1255080 | AT1G59870.1 | 64.286 | 126 | 45 | 0 | 7 | 132 | 226 | 351 | 3.97e-52 | 181 |
| Msa1255080 | AT1G15210.1 | 65.079 | 126 | 44 | 0 | 7 | 132 | 224 | 349 | 1.09e-51 | 180 |
| Msa1255080 | AT3G30842.1 | 66.129 | 124 | 42 | 0 | 9 | 132 | 203 | 326 | 3.23e-51 | 179 |
| Msa1255080 | AT2G36380.1 | 62.698 | 126 | 47 | 0 | 7 | 132 | 228 | 353 | 1.53e-50 | 177 |
| Msa1255080 | AT2G37280.3 | 61.905 | 126 | 48 | 0 | 7 | 132 | 223 | 348 | 2.70e-50 | 176 |
| Msa1255080 | AT2G37280.4 | 62.602 | 123 | 46 | 0 | 10 | 132 | 39 | 161 | 3.90e-50 | 176 |
| Msa1255080 | AT2G37280.2 | 62.602 | 123 | 46 | 0 | 10 | 132 | 197 | 319 | 4.38e-50 | 176 |
| Msa1255080 | AT2G37280.1 | 62.602 | 123 | 46 | 0 | 10 | 132 | 197 | 319 | 4.72e-50 | 176 |
| Msa1255080 | AT1G66950.1 | 61.905 | 126 | 48 | 0 | 7 | 132 | 230 | 355 | 5.03e-49 | 172 |
| Msa1255080 | AT2G26910.1 | 58.730 | 126 | 52 | 0 | 7 | 132 | 190 | 315 | 1.30e-48 | 171 |
| Msa1255080 | AT3G53480.1 | 59.677 | 124 | 50 | 0 | 9 | 132 | 231 | 354 | 5.99e-48 | 169 |
| Msa1255080 | AT4G15236.1 | 60.317 | 126 | 50 | 0 | 7 | 132 | 193 | 318 | 7.23e-47 | 166 |
| Msa1255080 | AT4G15233.3 | 59.524 | 126 | 51 | 0 | 7 | 132 | 133 | 258 | 2.74e-46 | 164 |
| Msa1255080 | AT4G15233.6 | 59.524 | 126 | 51 | 0 | 7 | 132 | 133 | 258 | 2.74e-46 | 164 |
| Msa1255080 | AT4G15233.8 | 59.524 | 126 | 51 | 0 | 7 | 132 | 186 | 311 | 3.28e-46 | 164 |
| Msa1255080 | AT4G15233.1 | 59.524 | 126 | 51 | 0 | 7 | 132 | 195 | 320 | 3.28e-46 | 164 |
| Msa1255080 | AT4G15233.2 | 59.524 | 126 | 51 | 0 | 7 | 132 | 195 | 320 | 3.37e-46 | 164 |
| Msa1255080 | AT4G15215.8 | 57.937 | 126 | 53 | 0 | 7 | 132 | 190 | 315 | 5.21e-46 | 164 |
| Msa1255080 | AT4G15215.10 | 57.937 | 126 | 53 | 0 | 7 | 132 | 190 | 315 | 5.21e-46 | 164 |
| Msa1255080 | AT4G15215.6 | 57.937 | 126 | 53 | 0 | 7 | 132 | 190 | 315 | 5.21e-46 | 164 |
| Msa1255080 | AT4G15215.7 | 57.937 | 126 | 53 | 0 | 7 | 132 | 190 | 315 | 5.21e-46 | 164 |
| Msa1255080 | AT4G15215.9 | 57.937 | 126 | 53 | 0 | 7 | 132 | 190 | 315 | 5.58e-46 | 164 |
| Msa1255080 | AT4G15215.4 | 57.937 | 126 | 53 | 0 | 7 | 132 | 190 | 315 | 5.58e-46 | 164 |
| Msa1255080 | AT4G15215.5 | 57.937 | 126 | 53 | 0 | 7 | 132 | 190 | 315 | 5.58e-46 | 164 |
| Msa1255080 | AT4G15215.3 | 57.937 | 126 | 53 | 0 | 7 | 132 | 190 | 315 | 5.58e-46 | 164 |
| Msa1255080 | AT4G15215.2 | 57.937 | 126 | 53 | 0 | 7 | 132 | 190 | 315 | 5.58e-46 | 164 |
| Msa1255080 | AT4G15215.11 | 57.937 | 126 | 53 | 0 | 7 | 132 | 193 | 318 | 5.58e-46 | 164 |
| Msa1255080 | AT4G15215.1 | 57.937 | 126 | 53 | 0 | 7 | 132 | 193 | 318 | 6.08e-46 | 164 |
| Msa1255080 | AT4G15230.4 | 56.349 | 126 | 55 | 0 | 7 | 132 | 117 | 242 | 5.48e-44 | 158 |
| Msa1255080 | AT4G15230.2 | 56.349 | 126 | 55 | 0 | 7 | 132 | 196 | 321 | 6.10e-44 | 158 |
| Msa1255080 | AT4G15230.3 | 56.349 | 126 | 55 | 0 | 7 | 132 | 196 | 321 | 6.39e-44 | 158 |
| Msa1255080 | AT4G15230.1 | 56.349 | 126 | 55 | 0 | 7 | 132 | 196 | 321 | 6.39e-44 | 158 |
| Msa1255080 | AT2G29940.1 | 48.855 | 131 | 66 | 1 | 9 | 138 | 217 | 347 | 3.50e-37 | 138 |
| Msa1255080 | AT4G15233.7 | 52.381 | 126 | 42 | 1 | 7 | 132 | 195 | 302 | 4.50e-36 | 135 |
| Msa1255080 | AT4G15233.5 | 52.381 | 126 | 42 | 1 | 7 | 132 | 133 | 240 | 5.02e-36 | 135 |
| Msa1255080 | AT4G15233.4 | 52.381 | 126 | 42 | 1 | 7 | 132 | 133 | 240 | 5.02e-36 | 135 |
| Msa1255080 | AT1G17840.1 | 37.302 | 126 | 46 | 4 | 8 | 133 | 110 | 202 | 1.79e-11 | 63.9 |
| Msa1255080 | AT3G13220.1 | 32.331 | 133 | 58 | 3 | 4 | 136 | 141 | 241 | 3.97e-11 | 62.8 |
Find 77 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTTATCAAATTTGCTTTC+TGG | 0.139989 | 8_2:-53479595 | None:intergenic |
| TGGCTTCATGATCAGGTTTC+TGG | 0.177431 | 8_2:+53478892 | Msa1255080:CDS |
| CGTGTCTTCAATAATGTTTA+TGG | 0.223689 | 8_2:+53478859 | Msa1255080:five_prime_UTR |
| TCGAACAGCAAACAAGATTA+AGG | 0.247505 | 8_2:-53478032 | None:intergenic |
| TACATAAGCGGCAGTTCTTT+GGG | 0.271249 | 8_2:-53478956 | None:intergenic |
| CTACATAAGCGGCAGTTCTT+TGG | 0.311636 | 8_2:-53478957 | None:intergenic |
| TCTGGAAAGGTGACTTATAA+TGG | 0.312868 | 8_2:+53478910 | Msa1255080:CDS |
| AAGAATGAAGGTTTGGAACT+TGG | 0.346590 | 8_2:+53478172 | Msa1255080:five_prime_UTR |
| GCTGCAGAAGCTTGCTGTTT+CGG | 0.347608 | 8_2:+53480092 | Msa1255080:CDS |
| AGTGAGCTTGATTGGTGTTT+GGG | 0.355157 | 8_2:+53480277 | Msa1255080:CDS |
| TTCCTTAACTCCTTCTTCCT+CGG | 0.362266 | 8_2:-53478147 | None:intergenic |
| GACAAAAGAAACGTGTTAAA+AGG | 0.365362 | 8_2:+53479794 | Msa1255080:CDS |
| TAGTGAGCTTGATTGGTGTT+TGG | 0.365654 | 8_2:+53480276 | Msa1255080:CDS |
| GATGGTGTGGCTTCATGATC+AGG | 0.375039 | 8_2:+53478885 | Msa1255080:exon |
| CAAGGAGTTGGGCTGCGTTA+TGG | 0.390090 | 8_2:+53479045 | Msa1255080:CDS |
| GAGGGAAAAGAGTACAAGAT+AGG | 0.397888 | 8_2:-53480315 | None:intergenic |
| AGGAAAGAAGAATGAAGGTT+TGG | 0.412866 | 8_2:+53478165 | Msa1255080:five_prime_UTR |
| TCCCTTCATTTGATTTCAGA+AGG | 0.428139 | 8_2:+53477982 | Msa1255080:five_prime_UTR |
| TGATAACATATTATGTCCTA+AGG | 0.441326 | 8_2:+53479609 | Msa1255080:CDS |
| TCCTTAACTCCTTCTTCCTC+GGG | 0.442594 | 8_2:-53478146 | None:intergenic |
| CAATAATGTTTATGGTAAGA+TGG | 0.448204 | 8_2:+53478867 | Msa1255080:exon |
| AGTTAAGGAAAGAAGAATGA+AGG | 0.448467 | 8_2:+53478160 | Msa1255080:five_prime_UTR |
| CGAACAGCAAACAAGATTAA+GGG | 0.464594 | 8_2:-53478031 | None:intergenic |
| CAGCTAGAGTCCAAGGAGTT+GGG | 0.466289 | 8_2:+53479034 | Msa1255080:CDS |
| CCCTTCATTTGATTTCAGAA+GGG | 0.468827 | 8_2:+53477983 | Msa1255080:five_prime_UTR |
| CCTTCATTTGATTTCAGAAG+GGG | 0.468985 | 8_2:+53477984 | Msa1255080:five_prime_UTR |
| TGAGGGATTTCTACTAATTG+AGG | 0.470545 | 8_2:+53478221 | Msa1255080:five_prime_UTR |
| CCCCTTCTGAAATCAAATGA+AGG | 0.475811 | 8_2:-53477984 | None:intergenic |
| TTCATGTACACATCAATGTC+TGG | 0.484699 | 8_2:-53479449 | None:intergenic |
| ACATGTGCTGATACTGTTGT+AGG | 0.486923 | 8_2:+53479742 | Msa1255080:CDS |
| CATAACGCAGCCCAACTCCT+TGG | 0.494891 | 8_2:-53479044 | None:intergenic |
| TCAGCTAGAGTCCAAGGAGT+TGG | 0.497485 | 8_2:+53479033 | Msa1255080:CDS |
| ACCAGCTGAAAACAACAAAC+AGG | 0.504495 | 8_2:-53480051 | None:intergenic |
| GCAATGTTAAGAGGTATCTC+TGG | 0.504733 | 8_2:+53479769 | Msa1255080:CDS |
| GCACTTCATCAAAATCTTGA+GGG | 0.505875 | 8_2:+53478204 | Msa1255080:five_prime_UTR |
| TTGTCCTCTATGAGTGGTGC+TGG | 0.506462 | 8_2:-53477916 | None:intergenic |
| ACCCGAGGAAGAAGGAGTTA+AGG | 0.507227 | 8_2:+53478145 | Msa1255080:five_prime_UTR |
| AAATGACCAAACCTAGATGA+AGG | 0.508478 | 8_2:-53478092 | None:intergenic |
| GTAGGGAATGCAATGTTAAG+AGG | 0.517676 | 8_2:+53479760 | Msa1255080:CDS |
| TACACATCAATGTCTGGATC+GGG | 0.518429 | 8_2:-53479443 | None:intergenic |
| AGGGAAAAGAGTACAAGATA+GGG | 0.527254 | 8_2:-53480314 | None:intergenic |
| TGCACTAAACCTGCCGAGGA+GGG | 0.543502 | 8_2:-53480333 | None:intergenic |
| GTACACATCAATGTCTGGAT+CGG | 0.545119 | 8_2:-53479444 | None:intergenic |
| GACTCTAGCTGAGAAGGCCA+AGG | 0.545687 | 8_2:-53479022 | None:intergenic |
| TCATGATCAGGTTTCTGGAA+AGG | 0.552511 | 8_2:+53478897 | Msa1255080:CDS |
| TTGTTCATCTCACTAATAGT+CGG | 0.553980 | 8_2:+53478113 | Msa1255080:five_prime_UTR |
| GCCTTCTCAGCTAGAGTCCA+AGG | 0.554156 | 8_2:+53479027 | Msa1255080:CDS |
| CGCACTTCATCAAAATCTTG+AGG | 0.556124 | 8_2:+53478203 | Msa1255080:five_prime_UTR |
| ACATAAGCGGCAGTTCTTTG+GGG | 0.559842 | 8_2:-53478955 | None:intergenic |
| CATAAACATTATTGAAGACA+CGG | 0.561216 | 8_2:-53478858 | None:intergenic |
| TGTCTATTACCCGAGGAAGA+AGG | 0.561241 | 8_2:+53478137 | Msa1255080:five_prime_UTR |
| CCCTTCTGAAATCAAATGAA+GGG | 0.568938 | 8_2:-53477983 | None:intergenic |
| TCCTTGGACTCTAGCTGAGA+AGG | 0.569485 | 8_2:-53479028 | None:intergenic |
| TAGAGGACAACACACAGACT+TGG | 0.570039 | 8_2:+53477929 | Msa1255080:five_prime_UTR |
| GCTGTCTTATATCAGGAAGT+AGG | 0.571081 | 8_2:+53480245 | Msa1255080:intron |
| AATGACTGTTAGAGAAACCT+TGG | 0.574134 | 8_2:+53479005 | Msa1255080:CDS |
| TCCTCTATGAGTGGTGCTGG+CGG | 0.576349 | 8_2:-53477913 | None:intergenic |
| CATAAGCGGCAGTTCTTTGG+GGG | 0.582408 | 8_2:-53478954 | None:intergenic |
| TCCGCCAGCACCACTCATAG+AGG | 0.584142 | 8_2:+53477912 | Msa1255080:five_prime_UTR |
| GTTGCTGGTGCAACACAGAA+AGG | 0.591078 | 8_2:-53480115 | None:intergenic |
| GTCTTATATCAGGAAGTAGG+AGG | 0.591413 | 8_2:+53480248 | Msa1255080:intron |
| GATAACATATTATGTCCTAA+GGG | 0.591649 | 8_2:+53479610 | Msa1255080:CDS |
| GCCTGTGGTGCTATCAGAGG+TGG | 0.593297 | 8_2:+53480011 | Msa1255080:CDS |
| TTGGCCTGTGGTGCTATCAG+AGG | 0.594131 | 8_2:+53480008 | Msa1255080:CDS |
| ACCACCTCTGATAGCACCAC+AGG | 0.601251 | 8_2:-53480012 | None:intergenic |
| ATGTTAAGAGGTATCTCTGG+TGG | 0.602587 | 8_2:+53479772 | Msa1255080:CDS |
| CATGTGCTGATACTGTTGTA+GGG | 0.607154 | 8_2:+53479743 | Msa1255080:CDS |
| AATGACCAAACCTAGATGAA+GGG | 0.610648 | 8_2:-53478091 | None:intergenic |
| ATGTTTATGGTAAGATGGTG+TGG | 0.615210 | 8_2:+53478872 | Msa1255080:exon |
| AGACATTGATGTGTACATGA+AGG | 0.618692 | 8_2:+53479451 | Msa1255080:CDS |
| GTTCAGGCTGTAGCAACTGA+AGG | 0.619180 | 8_2:+53479572 | Msa1255080:intron |
| ATGCACTAAACCTGCCGAGG+AGG | 0.622458 | 8_2:-53480334 | None:intergenic |
| AAAAGAAACGTGTTAAAAGG+TGG | 0.635022 | 8_2:+53479797 | Msa1255080:CDS |
| AATGACTGAGCAAACGAGAG+AGG | 0.649150 | 8_2:-53478060 | None:intergenic |
| TGTGTGTTGTCCTCTATGAG+TGG | 0.653652 | 8_2:-53477922 | None:intergenic |
| AACATGCACTAAACCTGCCG+AGG | 0.667373 | 8_2:-53480337 | None:intergenic |
| AGTCGGTTGTCTATTACCCG+AGG | 0.676694 | 8_2:+53478130 | Msa1255080:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAGGTTCTAATTATAATAAA+AGG | + | chr8_2:53478258-53478277 | Msa1255080:intron | 15.0% |
| !!! | AGGTTCTAATTATAATAAAA+GGG | + | chr8_2:53478259-53478278 | Msa1255080:intron | 15.0% |
| !! | TTAAAATAAAGGATATCTTT+GGG | - | chr8_2:53479342-53479361 | None:intergenic | 15.0% |
| !!! | TTTAAAATAAAGGATATCTT+TGG | - | chr8_2:53479343-53479362 | None:intergenic | 15.0% |
| !! | TAATTATAATAAAAGGGAAC+TGG | + | chr8_2:53478265-53478284 | Msa1255080:intron | 20.0% |
| !! | TAAGAACATAACAACAAAAA+GGG | - | chr8_2:53478386-53478405 | None:intergenic | 20.0% |
| !! | ATGTGTGAATTTGATAAATT+AGG | + | chr8_2:53478407-53478426 | Msa1255080:intron | 20.0% |
| !! | AAATCTTTATGTGAGATTAA+TGG | + | chr8_2:53478434-53478453 | Msa1255080:intron | 20.0% |
| !! | AATCTTTATGTGAGATTAAT+GGG | + | chr8_2:53478435-53478454 | Msa1255080:intron | 20.0% |
| !!! | TGTATTTATTAGTTTGAACA+AGG | + | chr8_2:53478594-53478613 | Msa1255080:intron | 20.0% |
| !!! | AACACAACATATAATTTTCT+TGG | + | chr8_2:53478656-53478675 | Msa1255080:intron | 20.0% |
| !!! | AATAAGTTTGTTAAAACTGA+TGG | + | chr8_2:53479235-53479254 | Msa1255080:intron | 20.0% |
| !!! | TAGAGTTATTTTATACTTAG+TGG | + | chr8_2:53479479-53479498 | Msa1255080:intron | 20.0% |
| !!! | AGAGTTATTTTATACTTAGT+GGG | + | chr8_2:53479480-53479499 | Msa1255080:intron | 20.0% |
| !! | AATGTATAACAAAGAAACAA+AGG | - | chr8_2:53479702-53479721 | None:intergenic | 20.0% |
| !!! | TGTTATACATTTTCAGATTT+TGG | + | chr8_2:53479711-53479730 | Msa1255080:intron | 20.0% |
| !!! | GTTATACATTTTCAGATTTT+GGG | + | chr8_2:53479712-53479731 | Msa1255080:intron | 20.0% |
| ! | CTAAAAGGGAAAATCAATTA+GGG | - | chr8_2:53478335-53478354 | None:intergenic | 25.0% |
| ! | ACTAAAAGGGAAAATCAATT+AGG | - | chr8_2:53478336-53478355 | None:intergenic | 25.0% |
| ! | GTAAGAACATAACAACAAAA+AGG | - | chr8_2:53478387-53478406 | None:intergenic | 25.0% |
| !!! | AGTGACATTTGTATTGATTT+TGG | + | chr8_2:53478703-53478722 | Msa1255080:intron | 25.0% |
| ! | CATAAACATTATTGAAGACA+CGG | - | chr8_2:53478861-53478880 | None:intergenic | 25.0% |
| ! | CAATAATGTTTATGGTAAGA+TGG | + | chr8_2:53478867-53478886 | Msa1255080:exon | 25.0% |
| !!! | ATCATTTTGATCTACATAAG+CGG | - | chr8_2:53478971-53478990 | None:intergenic | 25.0% |
| !!! | CATGAGCAACTTTAAAATAA+AGG | - | chr8_2:53479353-53479372 | None:intergenic | 25.0% |
| !! | ATGTTATCAAATTTGCTTTC+TGG | - | chr8_2:53479598-53479617 | None:intergenic | 25.0% |
| ! | TGATAACATATTATGTCCTA+AGG | + | chr8_2:53479609-53479628 | Msa1255080:CDS | 25.0% |
| ! | GATAACATATTATGTCCTAA+GGG | + | chr8_2:53479610-53479629 | Msa1255080:CDS | 25.0% |
| ! | GTATATATTACTTTACCCTT+AGG | - | chr8_2:53479628-53479647 | None:intergenic | 25.0% |
| TTGTTCATCTCACTAATAGT+CGG | + | chr8_2:53478113-53478132 | Msa1255080:five_prime_UTR | 30.0% | |
| AGTTAAGGAAAGAAGAATGA+AGG | + | chr8_2:53478160-53478179 | Msa1255080:five_prime_UTR | 30.0% | |
| !! | TGAGGTGAGTTTCTAAAATT+AGG | + | chr8_2:53478239-53478258 | Msa1255080:intron | 30.0% |
| TAGCAACACAACAACTAAAA+GGG | - | chr8_2:53478349-53478368 | None:intergenic | 30.0% | |
| ! | AGATTAATGGGTATTGTAAG+TGG | + | chr8_2:53478447-53478466 | Msa1255080:intron | 30.0% |
| GTAAGTGGTATGAGAAAATT+AGG | + | chr8_2:53478462-53478481 | Msa1255080:intron | 30.0% | |
| !!! | ATTTGTATTGATTTTGGCAC+TGG | + | chr8_2:53478709-53478728 | Msa1255080:intron | 30.0% |
| TCAATTTGAACAATATGCTC+AGG | - | chr8_2:53478784-53478803 | None:intergenic | 30.0% | |
| ! | GGTTACCTTTTTAGACAAAA+CGG | - | chr8_2:53478840-53478859 | None:intergenic | 30.0% |
| CGTGTCTTCAATAATGTTTA+TGG | + | chr8_2:53478859-53478878 | Msa1255080:five_prime_UTR | 30.0% | |
| ! | TTATTTTCATAAGCTCTCCT+GGG | - | chr8_2:53479220-53479239 | None:intergenic | 30.0% |
| CTGAACATCATGAATCAAAA+GGG | - | chr8_2:53479558-53479577 | None:intergenic | 30.0% | |
| GACAAAAGAAACGTGTTAAA+AGG | + | chr8_2:53479794-53479813 | Msa1255080:CDS | 30.0% | |
| AAAAGAAACGTGTTAAAAGG+TGG | + | chr8_2:53479797-53479816 | Msa1255080:CDS | 30.0% | |
| !!! | ATGCTTGTCTTTTTTACGAA+TGG | + | chr8_2:53479872-53479891 | Msa1255080:intron | 30.0% |
| !!! | TCTTTTTTACGAATGGTGTT+GGG | + | chr8_2:53479879-53479898 | Msa1255080:intron | 30.0% |
| ! | AAAACAAGGTACCAAAAACA+AGG | - | chr8_2:53480143-53480162 | None:intergenic | 30.0% |
| !!! | GTTTTTGGTACCTTGTTTTT+TGG | + | chr8_2:53480144-53480163 | Msa1255080:intron | 30.0% |
| ! | AGATTTGTTTCCATGTTGTT+AGG | + | chr8_2:53480185-53480204 | Msa1255080:intron | 30.0% |
| ! | TCCCTTCATTTGATTTCAGA+AGG | + | chr8_2:53477982-53478001 | Msa1255080:five_prime_UTR | 35.0% |
| !! | CCCTTCTGAAATCAAATGAA+GGG | - | chr8_2:53477986-53478005 | None:intergenic | 35.0% |
| ! | CCCTTCATTTGATTTCAGAA+GGG | + | chr8_2:53477983-53478002 | Msa1255080:five_prime_UTR | 35.0% |
| ! | CCTTCATTTGATTTCAGAAG+GGG | + | chr8_2:53477984-53478003 | Msa1255080:five_prime_UTR | 35.0% |
| CGAACAGCAAACAAGATTAA+GGG | - | chr8_2:53478034-53478053 | None:intergenic | 35.0% | |
| TCGAACAGCAAACAAGATTA+AGG | - | chr8_2:53478035-53478054 | None:intergenic | 35.0% | |
| AATGACCAAACCTAGATGAA+GGG | - | chr8_2:53478094-53478113 | None:intergenic | 35.0% | |
| AAATGACCAAACCTAGATGA+AGG | - | chr8_2:53478095-53478114 | None:intergenic | 35.0% | |
| AGGAAAGAAGAATGAAGGTT+TGG | + | chr8_2:53478165-53478184 | Msa1255080:five_prime_UTR | 35.0% | |
| ! | AAGAATGAAGGTTTGGAACT+TGG | + | chr8_2:53478172-53478191 | Msa1255080:five_prime_UTR | 35.0% |
| !! | AAGATTTTGATGAAGTGCGT+GGG | - | chr8_2:53478202-53478221 | None:intergenic | 35.0% |
| GCACTTCATCAAAATCTTGA+GGG | + | chr8_2:53478204-53478223 | Msa1255080:five_prime_UTR | 35.0% | |
| TGAGGGATTTCTACTAATTG+AGG | + | chr8_2:53478221-53478240 | Msa1255080:five_prime_UTR | 35.0% | |
| GTAGCAACACAACAACTAAA+AGG | - | chr8_2:53478350-53478369 | None:intergenic | 35.0% | |
| TTATATAGACCCACTTGAGT+TGG | + | chr8_2:53478622-53478641 | Msa1255080:intron | 35.0% | |
| ! | ACCTTTTTAGACAAAACGGT+GGG | - | chr8_2:53478836-53478855 | None:intergenic | 35.0% |
| ! | TACCTTTTTAGACAAAACGG+TGG | - | chr8_2:53478837-53478856 | None:intergenic | 35.0% |
| ATGTTTATGGTAAGATGGTG+TGG | + | chr8_2:53478872-53478891 | Msa1255080:exon | 35.0% | |
| TCTGGAAAGGTGACTTATAA+TGG | + | chr8_2:53478910-53478929 | Msa1255080:CDS | 35.0% | |
| AATGACTGTTAGAGAAACCT+TGG | + | chr8_2:53479005-53479024 | Msa1255080:CDS | 35.0% | |
| !! | CTTATTTTCATAAGCTCTCC+TGG | - | chr8_2:53479221-53479240 | None:intergenic | 35.0% |
| !!! | AGACAGTTTTAGAGAGCATA+TGG | - | chr8_2:53479279-53479298 | None:intergenic | 35.0% |
| ! | ATTTGCATGTTTTTCTCGTC+TGG | - | chr8_2:53479417-53479436 | None:intergenic | 35.0% |
| TTCATGTACACATCAATGTC+TGG | - | chr8_2:53479452-53479471 | None:intergenic | 35.0% | |
| AGACATTGATGTGTACATGA+AGG | + | chr8_2:53479451-53479470 | Msa1255080:CDS | 35.0% | |
| CCTGAACATCATGAATCAAA+AGG | - | chr8_2:53479559-53479578 | None:intergenic | 35.0% | |
| !! | CCTTTTGATTCATGATGTTC+AGG | + | chr8_2:53479556-53479575 | Msa1255080:intron | 35.0% |
| !!! | GTCTTTTTTACGAATGGTGT+TGG | + | chr8_2:53479878-53479897 | Msa1255080:intron | 35.0% |
| !!! | GGTTTTTTAGTGAGCTTGAT+TGG | + | chr8_2:53480269-53480288 | Msa1255080:CDS | 35.0% |
| ! | AGGGAAAAGAGTACAAGATA+GGG | - | chr8_2:53480317-53480336 | None:intergenic | 35.0% |
| !! | CCCCTTCTGAAATCAAATGA+AGG | - | chr8_2:53477987-53478006 | None:intergenic | 40.0% |
| ! | TTCTCGTTTTCCCTTCATCT+AGG | + | chr8_2:53478081-53478100 | Msa1255080:five_prime_UTR | 40.0% |
| ! | GTTTTCCCTTCATCTAGGTT+TGG | + | chr8_2:53478086-53478105 | Msa1255080:five_prime_UTR | 40.0% |
| TTCCTTAACTCCTTCTTCCT+CGG | - | chr8_2:53478150-53478169 | None:intergenic | 40.0% | |
| !! | CAAGATTTTGATGAAGTGCG+TGG | - | chr8_2:53478203-53478222 | None:intergenic | 40.0% |
| CGCACTTCATCAAAATCTTG+AGG | + | chr8_2:53478203-53478222 | Msa1255080:five_prime_UTR | 40.0% | |
| ! | TTGTTGTGTTGCTACATGTG+TGG | + | chr8_2:53478355-53478374 | Msa1255080:intron | 40.0% |
| GTTCTATCTCCAACTCAAGT+GGG | - | chr8_2:53478634-53478653 | None:intergenic | 40.0% | |
| AGTTCTATCTCCAACTCAAG+TGG | - | chr8_2:53478635-53478654 | None:intergenic | 40.0% | |
| !! | GGCACTGGTATATTTCAGAA+AGG | + | chr8_2:53478724-53478743 | Msa1255080:intron | 40.0% |
| ! | TCCCACCGTTTTGTCTAAAA+AGG | + | chr8_2:53478832-53478851 | Msa1255080:intron | 40.0% |
| ! | TCATGATCAGGTTTCTGGAA+AGG | + | chr8_2:53478897-53478916 | Msa1255080:CDS | 40.0% |
| TACATAAGCGGCAGTTCTTT+GGG | - | chr8_2:53478959-53478978 | None:intergenic | 40.0% | |
| ! | GTTGTTTCCATAAGTTACCC+AGG | + | chr8_2:53479200-53479219 | Msa1255080:intron | 40.0% |
| TACACATCAATGTCTGGATC+GGG | - | chr8_2:53479446-53479465 | None:intergenic | 40.0% | |
| GTACACATCAATGTCTGGAT+CGG | - | chr8_2:53479447-53479466 | None:intergenic | 40.0% | |
| ! | ACATGTGCTGATACTGTTGT+AGG | + | chr8_2:53479742-53479761 | Msa1255080:CDS | 40.0% |
| ! | CATGTGCTGATACTGTTGTA+GGG | + | chr8_2:53479743-53479762 | Msa1255080:CDS | 40.0% |
| GTAGGGAATGCAATGTTAAG+AGG | + | chr8_2:53479760-53479779 | Msa1255080:CDS | 40.0% | |
| !! | GCAATGTTAAGAGGTATCTC+TGG | + | chr8_2:53479769-53479788 | Msa1255080:CDS | 40.0% |
| !! | ATGTTAAGAGGTATCTCTGG+TGG | + | chr8_2:53479772-53479791 | Msa1255080:CDS | 40.0% |
| ! | ATCTAACACGTGTTTTGTCG+TGG | + | chr8_2:53479821-53479840 | Msa1255080:CDS | 40.0% |
| !! | TGCGCTAGTTTATGGTGTTT+TGG | + | chr8_2:53479920-53479939 | Msa1255080:intron | 40.0% |
| !! | GCGCTAGTTTATGGTGTTTT+GGG | + | chr8_2:53479921-53479940 | Msa1255080:intron | 40.0% |
| ! | TCATCTGTTGTGCTGATAGT+GGG | + | chr8_2:53479964-53479983 | Msa1255080:intron | 40.0% |
| ACCAGCTGAAAACAACAAAC+AGG | - | chr8_2:53480054-53480073 | None:intergenic | 40.0% | |
| !!! | ACCAGCAACATCCTTGTTTT+TGG | + | chr8_2:53480129-53480148 | Msa1255080:CDS | 40.0% |
| ACCAAAAACAAGGATGTTGC+TGG | - | chr8_2:53480133-53480152 | None:intergenic | 40.0% | |
| !!! | GTACCTTGTTTTTTGGCTTC+TGG | + | chr8_2:53480151-53480170 | Msa1255080:intron | 40.0% |
| TGTTTCCATGTTGTTAGGTG+TGG | + | chr8_2:53480190-53480209 | Msa1255080:intron | 40.0% | |
| AAAAGCCACACCTAACAACA+TGG | - | chr8_2:53480198-53480217 | None:intergenic | 40.0% | |
| GCTGTCTTATATCAGGAAGT+AGG | + | chr8_2:53480245-53480264 | Msa1255080:intron | 40.0% | |
| GTCTTATATCAGGAAGTAGG+AGG | + | chr8_2:53480248-53480267 | Msa1255080:intron | 40.0% | |
| ! | TAGTGAGCTTGATTGGTGTT+TGG | + | chr8_2:53480276-53480295 | Msa1255080:CDS | 40.0% |
| ! | AGTGAGCTTGATTGGTGTTT+GGG | + | chr8_2:53480277-53480296 | Msa1255080:CDS | 40.0% |
| ! | GAGGGAAAAGAGTACAAGAT+AGG | - | chr8_2:53480318-53480337 | None:intergenic | 40.0% |
| TGTGTGTTGTCCTCTATGAG+TGG | - | chr8_2:53477925-53477944 | None:intergenic | 45.0% | |
| TAGAGGACAACACACAGACT+TGG | + | chr8_2:53477929-53477948 | Msa1255080:five_prime_UTR | 45.0% | |
| AATGACTGAGCAAACGAGAG+AGG | - | chr8_2:53478063-53478082 | None:intergenic | 45.0% | |
| TGTCTATTACCCGAGGAAGA+AGG | + | chr8_2:53478137-53478156 | Msa1255080:five_prime_UTR | 45.0% | |
| TCCTTAACTCCTTCTTCCTC+GGG | - | chr8_2:53478149-53478168 | None:intergenic | 45.0% | |
| TGGCTTCATGATCAGGTTTC+TGG | + | chr8_2:53478892-53478911 | Msa1255080:CDS | 45.0% | |
| ACATAAGCGGCAGTTCTTTG+GGG | - | chr8_2:53478958-53478977 | None:intergenic | 45.0% | |
| CTACATAAGCGGCAGTTCTT+TGG | - | chr8_2:53478960-53478979 | None:intergenic | 45.0% | |
| AAGCTCTCCTGGGTAACTTA+TGG | - | chr8_2:53479210-53479229 | None:intergenic | 45.0% | |
| ! | TAACACGTGTTTTGTCGTGG+AGG | + | chr8_2:53479824-53479843 | Msa1255080:CDS | 45.0% |
| ! | ATGCCTTGTGCGCTAGTTTA+TGG | + | chr8_2:53479912-53479931 | Msa1255080:intron | 45.0% |
| ACACCATAAACTAGCGCACA+AGG | - | chr8_2:53479918-53479937 | None:intergenic | 45.0% | |
| ! | GTCATCTGTTGTGCTGATAG+TGG | + | chr8_2:53479963-53479982 | Msa1255080:intron | 45.0% |
| ! | CATCTGTTGTGCTGATAGTG+GGG | + | chr8_2:53479965-53479984 | Msa1255080:intron | 45.0% |
| !! | ATCTGTTGTGCTGATAGTGG+GGG | + | chr8_2:53479966-53479985 | Msa1255080:intron | 45.0% |
| !! | CTGCTATGGTGCAGTTTTGT+TGG | + | chr8_2:53479989-53480008 | Msa1255080:CDS | 45.0% |
| !!! | GCCTGTTTGTTGTTTTCAGC+TGG | + | chr8_2:53480050-53480069 | Msa1255080:CDS | 45.0% |
| CGACCAGAAGCCAAAAAACA+AGG | - | chr8_2:53480157-53480176 | None:intergenic | 45.0% | |
| TCCTGCTGCTGTCTTATATC+AGG | + | chr8_2:53480238-53480257 | Msa1255080:intron | 45.0% | |
| TCCTGATATAAGACAGCAGC+AGG | - | chr8_2:53480242-53480261 | None:intergenic | 45.0% | |
| ! | CTTGTACTCTTTTCCCTCCT+CGG | + | chr8_2:53480320-53480339 | Msa1255080:CDS | 45.0% |
| TTGTCCTCTATGAGTGGTGC+TGG | - | chr8_2:53477919-53477938 | None:intergenic | 50.0% | |
| AGTCGGTTGTCTATTACCCG+AGG | + | chr8_2:53478130-53478149 | Msa1255080:five_prime_UTR | 50.0% | |
| ACCCGAGGAAGAAGGAGTTA+AGG | + | chr8_2:53478145-53478164 | Msa1255080:five_prime_UTR | 50.0% | |
| GATGGTGTGGCTTCATGATC+AGG | + | chr8_2:53478885-53478904 | Msa1255080:exon | 50.0% | |
| CATAAGCGGCAGTTCTTTGG+GGG | - | chr8_2:53478957-53478976 | None:intergenic | 50.0% | |
| TCCTTGGACTCTAGCTGAGA+AGG | - | chr8_2:53479031-53479050 | None:intergenic | 50.0% | |
| TCAGCTAGAGTCCAAGGAGT+TGG | + | chr8_2:53479033-53479052 | Msa1255080:CDS | 50.0% | |
| CAGCTAGAGTCCAAGGAGTT+GGG | + | chr8_2:53479034-53479053 | Msa1255080:CDS | 50.0% | |
| GTTCAGGCTGTAGCAACTGA+AGG | + | chr8_2:53479572-53479591 | Msa1255080:intron | 50.0% | |
| !!! | AGAGGTGGTTGCTGTTTTGC+AGG | + | chr8_2:53480026-53480045 | Msa1255080:CDS | 50.0% |
| !! | GCTGCAGAAGCTTGCTGTTT+CGG | + | chr8_2:53480092-53480111 | Msa1255080:CDS | 50.0% |
| GTTGCTGGTGCAACACAGAA+AGG | - | chr8_2:53480118-53480137 | None:intergenic | 50.0% | |
| ! | TCCTCTATGAGTGGTGCTGG+CGG | - | chr8_2:53477916-53477935 | None:intergenic | 55.0% |
| GACTCTAGCTGAGAAGGCCA+AGG | - | chr8_2:53479025-53479044 | None:intergenic | 55.0% | |
| GCCTTCTCAGCTAGAGTCCA+AGG | + | chr8_2:53479027-53479046 | Msa1255080:CDS | 55.0% | |
| CATAACGCAGCCCAACTCCT+TGG | - | chr8_2:53479047-53479066 | None:intergenic | 55.0% | |
| CAAGGAGTTGGGCTGCGTTA+TGG | + | chr8_2:53479045-53479064 | Msa1255080:CDS | 55.0% | |
| ! | CACGTGTTTTGTCGTGGAGG+TGG | + | chr8_2:53479827-53479846 | Msa1255080:CDS | 55.0% |
| ! | CGAATGGTGTTGGGATCCCA+TGG | + | chr8_2:53479888-53479907 | Msa1255080:intron | 55.0% |
| TAGCGCACAAGGCATGCCAT+GGG | - | chr8_2:53479907-53479926 | None:intergenic | 55.0% | |
| ATGACCACAGCAGCGCACAA+AGG | - | chr8_2:53479948-53479967 | None:intergenic | 55.0% | |
| !!! | GGTGCAGTTTTGTTGGCCTG+TGG | + | chr8_2:53479996-53480015 | Msa1255080:CDS | 55.0% |
| !! | TTGGCCTGTGGTGCTATCAG+AGG | + | chr8_2:53480008-53480027 | Msa1255080:CDS | 55.0% |
| ACCACCTCTGATAGCACCAC+AGG | - | chr8_2:53480015-53480034 | None:intergenic | 55.0% | |
| ! | TACTCTTTTCCCTCCTCGGC+AGG | + | chr8_2:53480324-53480343 | Msa1255080:CDS | 55.0% |
| TCCGCCAGCACCACTCATAG+AGG | + | chr8_2:53477912-53477931 | Msa1255080:five_prime_UTR | 60.0% | |
| CTAGCGCACAAGGCATGCCA+TGG | - | chr8_2:53479908-53479927 | None:intergenic | 60.0% | |
| !! | GCTGATAGTGGGGGCTGCTA+TGG | + | chr8_2:53479975-53479994 | Msa1255080:intron | 60.0% |
| !! | GCCTGTGGTGCTATCAGAGG+TGG | + | chr8_2:53480011-53480030 | Msa1255080:CDS | 60.0% |
| GGGTCCTTTGTGCGCTGCTG+TGG | + | chr8_2:53479941-53479960 | Msa1255080:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 53477893 | 53480351 | 53477893 | ID=Msa1255080;Name=Msa1255080 |
| chr8_2 | mRNA | 53477893 | 53480351 | 53477893 | ID=Msa1255080-mRNA-1;Parent=Msa1255080;Name=Msa1255080-mRNA-1;_AED=0.23;_eAED=0.23;_QI=382|0.66|0.57|1|0.83|0.71|7|0|237 |
| chr8_2 | exon | 53477893 | 53478242 | 53477893 | ID=Msa1255080-mRNA-1:exon:16518;Parent=Msa1255080-mRNA-1 |
| chr8_2 | exon | 53478854 | 53479066 | 53478854 | ID=Msa1255080-mRNA-1:exon:16519;Parent=Msa1255080-mRNA-1 |
| chr8_2 | exon | 53479396 | 53479472 | 53479396 | ID=Msa1255080-mRNA-1:exon:16520;Parent=Msa1255080-mRNA-1 |
| chr8_2 | exon | 53479578 | 53479631 | 53479578 | ID=Msa1255080-mRNA-1:exon:16521;Parent=Msa1255080-mRNA-1 |
| chr8_2 | exon | 53479727 | 53479868 | 53479727 | ID=Msa1255080-mRNA-1:exon:16522;Parent=Msa1255080-mRNA-1 |
| chr8_2 | exon | 53479983 | 53480150 | 53479983 | ID=Msa1255080-mRNA-1:exon:16523;Parent=Msa1255080-mRNA-1 |
| chr8_2 | exon | 53480260 | 53480351 | 53480260 | ID=Msa1255080-mRNA-1:exon:16524;Parent=Msa1255080-mRNA-1 |
| chr8_2 | five_prime_UTR | 53477893 | 53478242 | 53477893 | ID=Msa1255080-mRNA-1:five_prime_utr;Parent=Msa1255080-mRNA-1 |
| chr8_2 | five_prime_UTR | 53478854 | 53478885 | 53478854 | ID=Msa1255080-mRNA-1:five_prime_utr;Parent=Msa1255080-mRNA-1 |
| chr8_2 | CDS | 53478886 | 53479066 | 53478886 | ID=Msa1255080-mRNA-1:cds;Parent=Msa1255080-mRNA-1 |
| chr8_2 | CDS | 53479396 | 53479472 | 53479396 | ID=Msa1255080-mRNA-1:cds;Parent=Msa1255080-mRNA-1 |
| chr8_2 | CDS | 53479578 | 53479631 | 53479578 | ID=Msa1255080-mRNA-1:cds;Parent=Msa1255080-mRNA-1 |
| chr8_2 | CDS | 53479727 | 53479868 | 53479727 | ID=Msa1255080-mRNA-1:cds;Parent=Msa1255080-mRNA-1 |
| chr8_2 | CDS | 53479983 | 53480150 | 53479983 | ID=Msa1255080-mRNA-1:cds;Parent=Msa1255080-mRNA-1 |
| chr8_2 | CDS | 53480260 | 53480351 | 53480260 | ID=Msa1255080-mRNA-1:cds;Parent=Msa1255080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
