Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1260620 | XP_024637200.1 | 93.496 | 246 | 16 | 0 | 1 | 246 | 4 | 249 | 1.74e-170 | 480 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1260620 | sp|Q2V0Z5|MIS12_ARATH | 41.803 | 244 | 124 | 7 | 1 | 239 | 1 | 231 | 2.65e-53 | 175 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003890 | Msa1260620 | 0.800943 | 1.136984e-48 | -8.615850e-47 |
| Msa0618470 | Msa1260620 | 0.802089 | 6.619951e-49 | -8.615850e-47 |
| Msa0632740 | Msa1260620 | 0.800871 | 1.176235e-48 | -8.615850e-47 |
| Msa0677410 | Msa1260620 | 0.808592 | 2.871307e-50 | -8.615850e-47 |
| Msa0707250 | Msa1260620 | 0.806644 | 7.444022e-50 | -8.615850e-47 |
| Msa0731940 | Msa1260620 | 0.813553 | 2.415307e-51 | -8.615850e-47 |
| Msa0832340 | Msa1260620 | 0.804697 | 1.907493e-49 | -8.615850e-47 |
| Msa0150840 | Msa1260620 | 0.807460 | 5.001537e-50 | -8.615850e-47 |
| Msa0166560 | Msa1260620 | 0.807080 | 6.017898e-50 | -8.615850e-47 |
| Msa0180500 | Msa1260620 | 0.817245 | 3.643801e-52 | -8.615850e-47 |
| Msa0211150 | Msa1260620 | 0.802925 | 4.450226e-49 | -8.615850e-47 |
| Msa1226270 | Msa1260620 | 0.801132 | 1.040020e-48 | -8.615850e-47 |
| Msa1232740 | Msa1260620 | 0.815103 | 1.097065e-51 | -8.615850e-47 |
| Msa1260620 | Msa1275590 | 0.824336 | 8.530124e-54 | -8.615850e-47 |
| Msa1260620 | Msa1276600 | 0.825766 | 3.919124e-54 | -8.615850e-47 |
| Msa1260620 | Msa1276890 | 0.827945 | 1.181581e-54 | -8.615850e-47 |
| Msa1260620 | Msa1286800 | 0.808444 | 3.088492e-50 | -8.615850e-47 |
| Msa1260620 | Msa1313320 | 0.804417 | 2.181946e-49 | -8.615850e-47 |
| Msa1260620 | Msa1412530 | 0.824141 | 9.479416e-54 | -8.615850e-47 |
| Msa1260620 | Msa1412540 | 0.816884 | 4.392977e-52 | -8.615850e-47 |
| Msa1260620 | Msa1440310 | 0.811891 | 5.580425e-51 | -8.615850e-47 |
| Msa1260620 | Msa1466540 | 0.812780 | 3.568483e-51 | -8.615850e-47 |
| Msa0367870 | Msa1260620 | 0.813915 | 2.009694e-51 | -8.615850e-47 |
| Msa0403640 | Msa1260620 | 0.805256 | 1.457689e-49 | -8.615850e-47 |
| Msa0405130 | Msa1260620 | 0.818358 | 2.043154e-52 | -8.615850e-47 |
| Msa0997370 | Msa1260620 | 0.807382 | 5.195543e-50 | -8.615850e-47 |
| Msa1075540 | Msa1260620 | 0.823544 | 1.308582e-53 | -8.615850e-47 |
| Msa1079230 | Msa1260620 | 0.805153 | 1.531730e-49 | -8.615850e-47 |
| Msa0267370 | Msa1260620 | 0.809495 | 1.839179e-50 | -8.615850e-47 |
| Msa0296820 | Msa1260620 | 0.805660 | 1.199245e-49 | -8.615850e-47 |
| Msa0317970 | Msa1260620 | 0.806344 | 8.609733e-50 | -8.615850e-47 |
| Msa0326480 | Msa1260620 | 0.817353 | 3.445709e-52 | -8.615850e-47 |
| Msa1121490 | Msa1260620 | 0.812193 | 4.794964e-51 | -8.615850e-47 |
| Msa1127750 | Msa1260620 | 0.804091 | 2.551149e-49 | -8.615850e-47 |
| Msa1137570 | Msa1260620 | 0.811095 | 8.310149e-51 | -8.615850e-47 |
| Msa1162780 | Msa1260620 | 0.813195 | 2.894253e-51 | -8.615850e-47 |
| Msa1174910 | Msa1260620 | 0.820543 | 6.488230e-53 | -8.615850e-47 |
| Msa1213520 | Msa1260620 | 0.998773 | 4.328688e-276 | -8.615850e-47 |
| Msa0532990 | Msa1260620 | 0.807479 | 4.953523e-50 | -8.615850e-47 |
| Msa0545700 | Msa1260620 | 0.801317 | 9.533230e-49 | -8.615850e-47 |
| Msa0844450 | Msa1260620 | 0.820157 | 7.956513e-53 | -8.615850e-47 |
| Msa0844490 | Msa1260620 | 0.814057 | 1.869922e-51 | -8.615850e-47 |
| Msa0888130 | Msa1260620 | 0.802905 | 4.493151e-49 | -8.615850e-47 |
| Msa0899980 | Msa1260620 | 0.807686 | 4.478387e-50 | -8.615850e-47 |
| Msa0902510 | Msa1260620 | 0.814907 | 1.212947e-51 | -8.615850e-47 |
| Msa0934890 | Msa1260620 | 0.803756 | 2.995216e-49 | -8.615850e-47 |
| Msa0936300 | Msa1260620 | 0.803532 | 3.333384e-49 | -8.615850e-47 |
| Msa0966750 | Msa1260620 | 0.809332 | 1.993800e-50 | -8.615850e-47 |
| Msa0969810 | Msa1260620 | 0.810996 | 8.728236e-51 | -8.615850e-47 |
| Msa0974070 | Msa1260620 | 0.807267 | 5.495325e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1260620 | MtrunA17_Chr4g0061861 | 93.496 | 246 | 16 | 0 | 1 | 246 | 4 | 249 | 1.60e-174 | 480 |
| Msa1260620 | MtrunA17_Chr4g0062071 | 92.276 | 246 | 16 | 1 | 1 | 246 | 1 | 243 | 8.04e-157 | 435 |
| Msa1260620 | MtrunA17_Chr4g0062041 | 88.889 | 36 | 4 | 0 | 201 | 236 | 2 | 37 | 2.07e-15 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1260620 | AT5G35520.1 | 41.803 | 244 | 124 | 7 | 1 | 239 | 1 | 231 | 2.69e-54 | 175 |
Find 75 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGTCTTCTCAATTTAAT+TGG | 0.103016 | 8_2:-62665724 | Msa1260620:three_prime_UTR |
| CTCTTACGCTGAGTTGTTTC+AGG | 0.143353 | 8_2:-62666750 | Msa1260620:CDS |
| CCCTTTACATATTCCCCTTT+TGG | 0.156078 | 8_2:+62665531 | None:intergenic |
| GAAATTTCGGGAATCGAATT+TGG | 0.161069 | 8_2:-62668017 | Msa1260620:five_prime_UTR |
| ATAGTTGTTTACAGCTTTAT+TGG | 0.213232 | 8_2:-62665474 | Msa1260620:three_prime_UTR |
| TCAAAAGGTTCAATCTGTTT+TGG | 0.255176 | 8_2:-62667572 | Msa1260620:CDS |
| GTACGGTTGGACTGAAATTT+CGG | 0.259504 | 8_2:-62668030 | Msa1260620:five_prime_UTR |
| TATTGGTCTATTTGTTGAAT+TGG | 0.272032 | 8_2:-62665457 | Msa1260620:three_prime_UTR |
| AAGGATTGACAACAATAAAA+TGG | 0.285180 | 8_2:-62666037 | Msa1260620:CDS |
| TACGGTTGGACTGAAATTTC+GGG | 0.288547 | 8_2:-62668029 | Msa1260620:five_prime_UTR |
| CATTGTTAGCTGAGTTTACT+AGG | 0.310089 | 8_2:-62665599 | Msa1260620:three_prime_UTR |
| GGATCAAAAGCTCGCTGTTT+GGG | 0.327066 | 8_2:-62667551 | Msa1260620:CDS |
| TCCGGTCTCTTCAATCTTGT+TGG | 0.331304 | 8_2:+62666074 | None:intergenic |
| TTGTGTTCCTGCAGAGATTA+TGG | 0.353919 | 8_2:-62666139 | Msa1260620:intron |
| ATAGAATTAGAAATAGTCTT+TGG | 0.355229 | 8_2:+62668057 | None:intergenic |
| TCCTGGTTCTACTTCCAATC+TGG | 0.359101 | 8_2:-62667034 | Msa1260620:CDS |
| GAACATACATTGAGAGTGTT+TGG | 0.361941 | 8_2:+62667478 | None:intergenic |
| TCCAAAGTAAAATACATTAC+AGG | 0.366210 | 8_2:-62665665 | Msa1260620:three_prime_UTR |
| GGAATCGAATTTGGCGGGAA+TGG | 0.369873 | 8_2:-62668008 | Msa1260620:exon |
| CATTTCAAATGTATGGTACT+TGG | 0.380857 | 8_2:-62665367 | Msa1260620:three_prime_UTR |
| TTGAATTGGTTCTTAATTGA+TGG | 0.382931 | 8_2:-62665443 | Msa1260620:three_prime_UTR |
| TCTGTCTTCTCAATTTAATT+GGG | 0.386873 | 8_2:-62665723 | Msa1260620:three_prime_UTR |
| GTTTGGCAATTGAAAACCTT+CGG | 0.391014 | 8_2:+62667495 | None:intergenic |
| CATCAAAGATTTAGCAATCC+AGG | 0.391347 | 8_2:+62665564 | None:intergenic |
| TGGATCAAAAGCTCGCTGTT+TGG | 0.391728 | 8_2:-62667552 | Msa1260620:CDS |
| TTTATTCGTAGTCTATTAGT+TGG | 0.395060 | 8_2:-62665785 | Msa1260620:three_prime_UTR |
| GTATATATTTCTCATCATAC+TGG | 0.412424 | 8_2:-62665834 | Msa1260620:three_prime_UTR |
| TTTGGCAATTGAAAACCTTC+GGG | 0.426623 | 8_2:+62667496 | None:intergenic |
| TCAGAACTTCGACTCAAGAT+AGG | 0.430690 | 8_2:-62666108 | Msa1260620:CDS |
| AACCACTCATTTCAAATGTA+TGG | 0.432061 | 8_2:-62665374 | Msa1260620:three_prime_UTR |
| TGATGAGATTTCTGCCCAAA+AGG | 0.434675 | 8_2:-62665546 | Msa1260620:three_prime_UTR |
| TGTTGATTGCATTCGTCAAA+AGG | 0.440105 | 8_2:-62667587 | Msa1260620:CDS |
| TAATTCTATCATTGTACGGT+TGG | 0.453142 | 8_2:-62668043 | Msa1260620:five_prime_UTR |
| AGTAGCTTCCGCATTGAGCT+TGG | 0.467482 | 8_2:+62667759 | None:intergenic |
| TCTGCTATATATGCTTCTAA+AGG | 0.478873 | 8_2:-62666009 | Msa1260620:intron |
| AGCGAATCTCTACTTTCTAA+AGG | 0.484540 | 8_2:+62665336 | None:intergenic |
| CTGAGCATCTAATTCCAGAT+TGG | 0.485974 | 8_2:+62667020 | None:intergenic |
| TCGAATTTGGCGGGAATGGA+AGG | 0.492575 | 8_2:-62668004 | Msa1260620:exon |
| TTTCTAATTCTATCATTGTA+CGG | 0.497693 | 8_2:-62668047 | Msa1260620:five_prime_UTR |
| CCTTCTCATGCTGAAATGAG+TGG | 0.498005 | 8_2:-62665757 | Msa1260620:three_prime_UTR |
| CCCAAAAGGGGAATATGTAA+AGG | 0.498189 | 8_2:-62665532 | Msa1260620:three_prime_UTR |
| TAAAATACATTACAGGTCAC+AGG | 0.498412 | 8_2:-62665658 | Msa1260620:three_prime_UTR |
| ATGAAACCTGTGTGAGATGT+TGG | 0.501041 | 8_2:+62667728 | None:intergenic |
| TCTTACGCTGAGTTGTTTCA+GGG | 0.501163 | 8_2:-62666749 | Msa1260620:intron |
| CCAAAAGGGGAATATGTAAA+GGG | 0.502598 | 8_2:-62665531 | Msa1260620:three_prime_UTR |
| GATGAGATTTCTGCCCAAAA+GGG | 0.504314 | 8_2:-62665545 | Msa1260620:three_prime_UTR |
| AGTGGGAATGTCATTGATCC+TGG | 0.506246 | 8_2:-62667051 | Msa1260620:CDS |
| AGCTTCCGCATTGAGCTTGG+TGG | 0.510752 | 8_2:+62667762 | None:intergenic |
| TGAAACCTGTGTGAGATGTT+GGG | 0.524390 | 8_2:+62667729 | None:intergenic |
| TTTCGGGAATCGAATTTGGC+GGG | 0.533214 | 8_2:-62668013 | Msa1260620:five_prime_UTR |
| ACTTCGTTGAAGAAGAGTTG+TGG | 0.543092 | 8_2:+62667929 | None:intergenic |
| CTTCAAATTTCGTATTAGAG+AGG | 0.553512 | 8_2:+62665899 | None:intergenic |
| TATCTTGAGTCGAAGTTCTG+AGG | 0.553557 | 8_2:+62666110 | None:intergenic |
| TCCAGATTGGAAGTAGAACC+AGG | 0.560356 | 8_2:+62667033 | None:intergenic |
| ATTTCGGGAATCGAATTTGG+CGG | 0.561030 | 8_2:-62668014 | Msa1260620:five_prime_UTR |
| ATCAAAGATTTAGCAATCCA+GGG | 0.563272 | 8_2:+62665565 | None:intergenic |
| TACCATACATTTGAAATGAG+TGG | 0.565072 | 8_2:+62665372 | None:intergenic |
| ATGCTCAGTTAGAATCATTG+AGG | 0.569791 | 8_2:-62667005 | Msa1260620:CDS |
| TTCTTTCAGGGTGAAACAAG+TGG | 0.571772 | 8_2:-62667069 | Msa1260620:intron |
| ACTAGGTTGTGATAAAGCCC+TGG | 0.575518 | 8_2:-62665582 | Msa1260620:three_prime_UTR |
| ACCAACAAGATTGAAGAGAC+CGG | 0.579940 | 8_2:-62666075 | Msa1260620:CDS |
| GTCAGTCTTCTCACAATGCT+CGG | 0.580367 | 8_2:-62666808 | Msa1260620:CDS |
| CCACTCATTTCAGCATGAGA+AGG | 0.582573 | 8_2:+62665757 | None:intergenic |
| GACTACGAATAAACAATCAC+AGG | 0.584700 | 8_2:+62665795 | None:intergenic |
| TTCTCAATTTAATTGGGCGA+AGG | 0.594361 | 8_2:-62665717 | Msa1260620:three_prime_UTR |
| ATGAGATTTCTGCCCAAAAG+GGG | 0.597012 | 8_2:-62665544 | Msa1260620:three_prime_UTR |
| TCTTTCAGGGTGAAACAAGT+GGG | 0.606547 | 8_2:-62667068 | Msa1260620:intron |
| TAAACAACTATTCCTTAACA+TGG | 0.625217 | 8_2:+62665486 | None:intergenic |
| TGGGCGAAGGCAGAAGCTAG+AGG | 0.634144 | 8_2:-62665704 | Msa1260620:three_prime_UTR |
| CTTGAGTCGAAGTTCTGAGG+CGG | 0.647508 | 8_2:+62666113 | None:intergenic |
| AAAATACATTACAGGTCACA+GGG | 0.652192 | 8_2:-62665657 | Msa1260620:three_prime_UTR |
| AGTAGAAATCGAAAGTATCG+AGG | 0.666017 | 8_2:+62667882 | None:intergenic |
| AAGATCCCAACATCTCACAC+AGG | 0.719465 | 8_2:-62667734 | Msa1260620:intron |
| AGCATCCACCAAGCTCAATG+CGG | 0.721723 | 8_2:-62667767 | Msa1260620:CDS |
| CAATGCTCGGTATATCAACG+AGG | 0.745621 | 8_2:-62666795 | Msa1260620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATTTAATTAACTTTAATT+AGG | - | chr8_2:62665721-62665740 | Msa1260620:three_prime_UTR | 10.0% |
| !! | TAAAAATGTATTATATGATG+TGG | - | chr8_2:62666176-62666195 | Msa1260620:intron | 15.0% |
| !! | CTTAAGAAAAAATTATACAA+AGG | + | chr8_2:62666291-62666310 | None:intergenic | 15.0% |
| !!! | AATATTTTACTTGCAAATAA+TGG | - | chr8_2:62666910-62666929 | Msa1260620:intron | 15.0% |
| !!! | TAGAACAATAAATGATATTT+TGG | + | chr8_2:62667410-62667429 | None:intergenic | 15.0% |
| !!! | ATGTTTAGAAATAATTTTAC+TGG | - | chr8_2:62667976-62667995 | Msa1260620:CDS | 15.0% |
| !! | ATAGAATTAGAAATAGTCTT+TGG | + | chr8_2:62665336-62665355 | None:intergenic | 20.0% |
| !! | TTTCTAATTCTATCATTGTA+CGG | - | chr8_2:62665343-62665362 | Msa1260620:three_prime_UTR | 20.0% |
| !!! | AAATTAAATCTTGTTGTTTC+AGG | - | chr8_2:62665598-62665617 | Msa1260620:three_prime_UTR | 20.0% |
| !!! | AATTAAATCTTGTTGTTTCA+GGG | - | chr8_2:62665599-62665618 | Msa1260620:three_prime_UTR | 20.0% |
| !! | TAAGCAATTTCTTTGAATAA+TGG | + | chr8_2:62665698-62665717 | None:intergenic | 20.0% |
| !! | TAATCTCTTTAAATAAAGGT+AGG | + | chr8_2:62666048-62666067 | None:intergenic | 20.0% |
| !! | CCTTTAATCTCTTTAAATAA+AGG | + | chr8_2:62666052-62666071 | None:intergenic | 20.0% |
| !!! | CCTTTATTTAAAGAGATTAA+AGG | - | chr8_2:62666049-62666068 | Msa1260620:CDS | 20.0% |
| !! | AAAAATTATACAAAGGAACA+AGG | + | chr8_2:62666284-62666303 | None:intergenic | 20.0% |
| !! | CAAAAGAACATTGAATTATT+TGG | - | chr8_2:62666825-62666844 | Msa1260620:CDS | 20.0% |
| !! | AACATTGAATTATTTGGATA+TGG | - | chr8_2:62666831-62666850 | Msa1260620:CDS | 20.0% |
| !! | TATAAAACACAATCAAAAGA+CGG | + | chr8_2:62666950-62666969 | None:intergenic | 20.0% |
| !!! | TCAGTACATTTTTACATTTA+TGG | - | chr8_2:62667228-62667247 | Msa1260620:intron | 20.0% |
| !! | AAAAAACATTATCCATGTTA+AGG | - | chr8_2:62667892-62667911 | Msa1260620:CDS | 20.0% |
| !! | CAATTTCTTTGAATAATGGA+AGG | + | chr8_2:62665694-62665713 | None:intergenic | 25.0% |
| !!! | TGTTTATTTGTTTCTGTGAA+AGG | - | chr8_2:62665779-62665798 | Msa1260620:three_prime_UTR | 25.0% |
| !!! | GTTTATTTGTTTCTGTGAAA+GGG | - | chr8_2:62665780-62665799 | Msa1260620:three_prime_UTR | 25.0% |
| ! | GAAGAGAAAAACAATGATAA+AGG | + | chr8_2:62665875-62665894 | None:intergenic | 25.0% |
| !! | TTGTTGTTATTCGCTAATTA+TGG | - | chr8_2:62665944-62665963 | Msa1260620:intron | 25.0% |
| ! | AATTGTATTGTTTGATGTCT+TGG | + | chr8_2:62666127-62666146 | None:intergenic | 25.0% |
| !!! | AGGTTTTAGAAAAGAGATTA+AGG | + | chr8_2:62666264-62666283 | None:intergenic | 25.0% |
| !! | TAAAGTCTTCATTTTGTAGA+TGG | - | chr8_2:62666450-62666469 | Msa1260620:intron | 25.0% |
| !!! | GTTTCTCATTTGATTTTTCT+TGG | - | chr8_2:62666492-62666511 | Msa1260620:intron | 25.0% |
| ! | CTTAATACATACAAACAAAC+AGG | + | chr8_2:62666762-62666781 | None:intergenic | 25.0% |
| !! | TATATTACTGACTGTGTAAT+TGG | + | chr8_2:62666873-62666892 | None:intergenic | 25.0% |
| ! | TAATGTCTTTCGTTTCTATA+TGG | - | chr8_2:62666974-62666993 | Msa1260620:intron | 25.0% |
| !! | CAAGATAAGATTTGTTTGAT+AGG | - | chr8_2:62667003-62667022 | Msa1260620:CDS | 25.0% |
| !! | GTTTCATTTCTCTTTTACTA+AGG | + | chr8_2:62667089-62667108 | None:intergenic | 25.0% |
| ! | AAATAATGTCAACAATTTCC+CGG | - | chr8_2:62667109-62667128 | Msa1260620:intron | 25.0% |
| ! | AAGGATTGACAACAATAAAA+TGG | - | chr8_2:62667353-62667372 | Msa1260620:intron | 25.0% |
| !! | CTACATGAATTAATTTTCAC+AGG | - | chr8_2:62667427-62667446 | Msa1260620:intron | 25.0% |
| ! | AAATGTTCAATTCAGAACTA+TGG | + | chr8_2:62667460-62667479 | None:intergenic | 25.0% |
| ! | GTATATATTTCTCATCATAC+TGG | - | chr8_2:62667556-62667575 | Msa1260620:CDS | 25.0% |
| ! | TTTATTCGTAGTCTATTAGT+TGG | - | chr8_2:62667605-62667624 | Msa1260620:intron | 25.0% |
| ! | TTCTGTCTTCTCAATTTAAT+TGG | - | chr8_2:62667666-62667685 | Msa1260620:intron | 25.0% |
| ! | TCTGTCTTCTCAATTTAATT+GGG | - | chr8_2:62667667-62667686 | Msa1260620:intron | 25.0% |
| ! | TCCAAAGTAAAATACATTAC+AGG | - | chr8_2:62667725-62667744 | Msa1260620:intron | 25.0% |
| !! | ACCTGTAATGTATTTTACTT+TGG | + | chr8_2:62667729-62667748 | None:intergenic | 25.0% |
| ! | TAAACAACTATTCCTTAACA+TGG | + | chr8_2:62667907-62667926 | None:intergenic | 25.0% |
| !! | ATAGTTGTTTACAGCTTTAT+TGG | - | chr8_2:62667916-62667935 | Msa1260620:CDS | 25.0% |
| !! | TATTGGTCTATTTGTTGAAT+TGG | - | chr8_2:62667933-62667952 | Msa1260620:CDS | 25.0% |
| !! | TTGAATTGGTTCTTAATTGA+TGG | - | chr8_2:62667947-62667966 | Msa1260620:CDS | 25.0% |
| TAATTCTATCATTGTACGGT+TGG | - | chr8_2:62665347-62665366 | Msa1260620:three_prime_UTR | 30.0% | |
| ! | TCAAAAGGTTCAATCTGTTT+TGG | - | chr8_2:62665818-62665837 | Msa1260620:three_prime_UTR | 30.0% |
| ATTAGCGAATAACAACAAGT+TGG | + | chr8_2:62665942-62665961 | None:intergenic | 30.0% | |
| CATCAAAATCTATGCTATTG+CGG | - | chr8_2:62666007-62666026 | Msa1260620:intron | 30.0% | |
| AAGAGATTAAAGGAAATGCA+CGG | - | chr8_2:62666059-62666078 | Msa1260620:CDS | 30.0% | |
| ! | AAGAAAGTGTACTTTCTTTC+AGG | - | chr8_2:62666308-62666327 | Msa1260620:intron | 30.0% |
| ! | AGAAAGTGTACTTTCTTTCA+GGG | - | chr8_2:62666309-62666328 | Msa1260620:intron | 30.0% |
| ATTGAGGAAAAAACTAGTTG+AGG | - | chr8_2:62666401-62666420 | Msa1260620:intron | 30.0% | |
| CAAACAAACAGGTATCAAAA+TGG | + | chr8_2:62666751-62666770 | None:intergenic | 30.0% | |
| !! | CTTGCAAATAATGGACATTT+AGG | - | chr8_2:62666919-62666938 | Msa1260620:intron | 30.0% |
| ! | GATAAGATTTGTTTGATAGG+AGG | - | chr8_2:62667006-62667025 | Msa1260620:CDS | 30.0% |
| TTGATAGGAGGACTATATTT+AGG | - | chr8_2:62667018-62667037 | Msa1260620:CDS | 30.0% | |
| TGATAGGAGGACTATATTTA+GGG | - | chr8_2:62667019-62667038 | Msa1260620:CDS | 30.0% | |
| !! | CCTTTTTGCTTTCATTTTTC+CGG | + | chr8_2:62667337-62667356 | None:intergenic | 30.0% |
| TCTGCTATATATGCTTCTAA+AGG | - | chr8_2:62667381-62667400 | Msa1260620:intron | 30.0% | |
| !! | AGTTCTGAATTGAACATTTC+TGG | - | chr8_2:62667461-62667480 | Msa1260620:intron | 30.0% |
| CTTCAAATTTCGTATTAGAG+AGG | + | chr8_2:62667494-62667513 | None:intergenic | 30.0% | |
| TAAAATACATTACAGGTCAC+AGG | - | chr8_2:62667732-62667751 | Msa1260620:intron | 30.0% | |
| AAAATACATTACAGGTCACA+GGG | - | chr8_2:62667733-62667752 | Msa1260620:intron | 30.0% | |
| ATCAAAGATTTAGCAATCCA+GGG | + | chr8_2:62667828-62667847 | None:intergenic | 30.0% | |
| AACCACTCATTTCAAATGTA+TGG | - | chr8_2:62668016-62668035 | Msa1260620:five_prime_UTR | 30.0% | |
| ! | TACCATACATTTGAAATGAG+TGG | + | chr8_2:62668021-62668040 | None:intergenic | 30.0% |
| CATTTCAAATGTATGGTACT+TGG | - | chr8_2:62668023-62668042 | Msa1260620:five_prime_UTR | 30.0% | |
| GAAATTTCGGGAATCGAATT+TGG | - | chr8_2:62665373-62665392 | Msa1260620:three_prime_UTR | 35.0% | |
| !! | AGTAGAAATCGAAAGTATCG+AGG | + | chr8_2:62665511-62665530 | None:intergenic | 35.0% |
| AAGAAGAAGAAGAAGCGAAA+GGG | + | chr8_2:62665547-62665566 | None:intergenic | 35.0% | |
| AAAGAAGAAGAAGAAGCGAA+AGG | + | chr8_2:62665548-62665567 | None:intergenic | 35.0% | |
| ! | TGTTGATTGCATTCGTCAAA+AGG | - | chr8_2:62665803-62665822 | Msa1260620:three_prime_UTR | 35.0% |
| TTTGGCAATTGAAAACCTTC+GGG | + | chr8_2:62665897-62665916 | None:intergenic | 35.0% | |
| GTTTGGCAATTGAAAACCTT+CGG | + | chr8_2:62665898-62665917 | None:intergenic | 35.0% | |
| !! | GAACATACATTGAGAGTGTT+TGG | + | chr8_2:62665915-62665934 | None:intergenic | 35.0% |
| TTCGCTAATTATGGTCAATG+TGG | - | chr8_2:62665953-62665972 | Msa1260620:intron | 35.0% | |
| ATGCTCAGTTAGAATCATTG+AGG | - | chr8_2:62666385-62666404 | Msa1260620:intron | 35.0% | |
| TAGTTGAGGTAATAAGAGTG+TGG | - | chr8_2:62666415-62666434 | Msa1260620:intron | 35.0% | |
| ! | TTGGTAATAAATGTGCTGTC+AGG | - | chr8_2:62666511-62666530 | Msa1260620:intron | 35.0% |
| TAATAAATGTGCTGTCAGGT+GGG | - | chr8_2:62666515-62666534 | Msa1260620:intron | 35.0% | |
| GATAGGAGGACTATATTTAG+GGG | - | chr8_2:62667020-62667039 | Msa1260620:CDS | 35.0% | |
| ATAGGAGGACTATATTTAGG+GGG | - | chr8_2:62667021-62667040 | Msa1260620:CDS | 35.0% | |
| CTGACCTATGATACCTATAT+TGG | + | chr8_2:62667049-62667068 | None:intergenic | 35.0% | |
| CAATATAGGTATCATAGGTC+AGG | - | chr8_2:62667047-62667066 | Msa1260620:CDS | 35.0% | |
| CAAGTAGGCAAGAATGTATT+TGG | - | chr8_2:62667147-62667166 | Msa1260620:intron | 35.0% | |
| CCGGAAAAATGAAAGCAAAA+AGG | - | chr8_2:62667334-62667353 | Msa1260620:intron | 35.0% | |
| !! | AATTGAACATTTCTGGTTGC+AGG | - | chr8_2:62667468-62667487 | Msa1260620:intron | 35.0% |
| GACTACGAATAAACAATCAC+AGG | + | chr8_2:62667598-62667617 | None:intergenic | 35.0% | |
| TTCTCAATTTAATTGGGCGA+AGG | - | chr8_2:62667673-62667692 | Msa1260620:intron | 35.0% | |
| CATTGTTAGCTGAGTTTACT+AGG | - | chr8_2:62667791-62667810 | Msa1260620:intron | 35.0% | |
| CATCAAAGATTTAGCAATCC+AGG | + | chr8_2:62667829-62667848 | None:intergenic | 35.0% | |
| ! | CCTTTACATATTCCCCTTTT+GGG | + | chr8_2:62667861-62667880 | None:intergenic | 35.0% |
| CCAAAAGGGGAATATGTAAA+GGG | - | chr8_2:62667859-62667878 | Msa1260620:intron | 35.0% | |
| AGCGAATCTCTACTTTCTAA+AGG | + | chr8_2:62668057-62668076 | None:intergenic | 35.0% | |
| GTACGGTTGGACTGAAATTT+CGG | - | chr8_2:62665360-62665379 | Msa1260620:three_prime_UTR | 40.0% | |
| TACGGTTGGACTGAAATTTC+GGG | - | chr8_2:62665361-62665380 | Msa1260620:three_prime_UTR | 40.0% | |
| ATTTCGGGAATCGAATTTGG+CGG | - | chr8_2:62665376-62665395 | Msa1260620:three_prime_UTR | 40.0% | |
| ACTTCGTTGAAGAAGAGTTG+TGG | + | chr8_2:62665464-62665483 | None:intergenic | 40.0% | |
| AGAAGAAGAAGAAGCGAAAG+GGG | + | chr8_2:62665546-62665565 | None:intergenic | 40.0% | |
| TGAAACCTGTGTGAGATGTT+GGG | + | chr8_2:62665664-62665683 | None:intergenic | 40.0% | |
| ATGAAACCTGTGTGAGATGT+TGG | + | chr8_2:62665665-62665684 | None:intergenic | 40.0% | |
| !! | CATTGTTTTTCTCTTCCCGA+AGG | - | chr8_2:62665879-62665898 | Msa1260620:CDS | 40.0% |
| ATGTCTTGGCAAGTTGTGAT+TGG | + | chr8_2:62666113-62666132 | None:intergenic | 40.0% | |
| TTCTTTCAGGGTGAAACAAG+TGG | - | chr8_2:62666321-62666340 | Msa1260620:intron | 40.0% | |
| TCTTTCAGGGTGAAACAAGT+GGG | - | chr8_2:62666322-62666341 | Msa1260620:intron | 40.0% | |
| CTGAGCATCTAATTCCAGAT+TGG | + | chr8_2:62666373-62666392 | None:intergenic | 40.0% | |
| GTAATAAATGTGCTGTCAGG+TGG | - | chr8_2:62666514-62666533 | Msa1260620:intron | 40.0% | |
| AATAAATGTGCTGTCAGGTG+GGG | - | chr8_2:62666516-62666535 | Msa1260620:intron | 40.0% | |
| ! | TCTTACGCTGAGTTGTTTCA+GGG | - | chr8_2:62666641-62666660 | Msa1260620:intron | 40.0% |
| !! | AATACCAGTTCTGAGTAGCA+CGG | + | chr8_2:62666723-62666742 | None:intergenic | 40.0% |
| !! | TATTTAGGGGGCACCAATAT+AGG | - | chr8_2:62667033-62667052 | Msa1260620:CDS | 40.0% |
| GGCACCAATATAGGTATCAT+AGG | - | chr8_2:62667042-62667061 | Msa1260620:CDS | 40.0% | |
| AGCTCTGCATTATTGCAAGT+AGG | - | chr8_2:62667132-62667151 | Msa1260620:intron | 40.0% | |
| TTGTGTTCCTGCAGAGATTA+TGG | - | chr8_2:62667251-62667270 | Msa1260620:intron | 40.0% | |
| TATCTTGAGTCGAAGTTCTG+AGG | + | chr8_2:62667283-62667302 | None:intergenic | 40.0% | |
| TCAGAACTTCGACTCAAGAT+AGG | - | chr8_2:62667282-62667301 | Msa1260620:intron | 40.0% | |
| ACCAACAAGATTGAAGAGAC+CGG | - | chr8_2:62667315-62667334 | Msa1260620:intron | 40.0% | |
| TGATGAGATTTCTGCCCAAA+AGG | - | chr8_2:62667844-62667863 | Msa1260620:intron | 40.0% | |
| GATGAGATTTCTGCCCAAAA+GGG | - | chr8_2:62667845-62667864 | Msa1260620:intron | 40.0% | |
| ATGAGATTTCTGCCCAAAAG+GGG | - | chr8_2:62667846-62667865 | Msa1260620:intron | 40.0% | |
| CCCAAAAGGGGAATATGTAA+AGG | - | chr8_2:62667858-62667877 | Msa1260620:intron | 40.0% | |
| ! | CCCTTTACATATTCCCCTTT+TGG | + | chr8_2:62667862-62667881 | None:intergenic | 40.0% |
| TTTCGGGAATCGAATTTGGC+GGG | - | chr8_2:62665377-62665396 | Msa1260620:three_prime_UTR | 45.0% | |
| !! | AAGCGAAAGGGGTTAGTTAC+TGG | + | chr8_2:62665535-62665554 | None:intergenic | 45.0% |
| AAGATCCCAACATCTCACAC+AGG | - | chr8_2:62665656-62665675 | Msa1260620:three_prime_UTR | 45.0% | |
| TGGATCAAAAGCTCGCTGTT+TGG | - | chr8_2:62665838-62665857 | Msa1260620:three_prime_UTR | 45.0% | |
| GGATCAAAAGCTCGCTGTTT+GGG | - | chr8_2:62665839-62665858 | Msa1260620:three_prime_UTR | 45.0% | |
| !! | ACTGCAATGGACTGTGATTG+AGG | + | chr8_2:62665979-62665998 | None:intergenic | 45.0% |
| TGATGTCTCTGTGACTGCAA+TGG | + | chr8_2:62665992-62666011 | None:intergenic | 45.0% | |
| AAGGTAGGCGACCACAATAT+GGG | + | chr8_2:62666033-62666052 | None:intergenic | 45.0% | |
| AAAGGTAGGCGACCACAATA+TGG | + | chr8_2:62666034-62666053 | None:intergenic | 45.0% | |
| AGTGGGAATGTCATTGATCC+TGG | - | chr8_2:62666339-62666358 | Msa1260620:intron | 45.0% | |
| !! | TCCTGGTTCTACTTCCAATC+TGG | - | chr8_2:62666356-62666375 | Msa1260620:intron | 45.0% |
| TCCAGATTGGAAGTAGAACC+AGG | + | chr8_2:62666360-62666379 | None:intergenic | 45.0% | |
| GTCAGTCTTCTCACAATGCT+CGG | - | chr8_2:62666582-62666601 | Msa1260620:intron | 45.0% | |
| CAATGCTCGGTATATCAACG+AGG | - | chr8_2:62666595-62666614 | Msa1260620:intron | 45.0% | |
| ! | CTCTTACGCTGAGTTGTTTC+AGG | - | chr8_2:62666640-62666659 | Msa1260620:intron | 45.0% |
| !! | ATACCAGTTCTGAGTAGCAC+GGG | + | chr8_2:62666722-62666741 | None:intergenic | 45.0% |
| TTGCAATAATGCAGAGCTCC+GGG | + | chr8_2:62667130-62667149 | None:intergenic | 45.0% | |
| CTTGCAATAATGCAGAGCTC+CGG | + | chr8_2:62667131-62667150 | None:intergenic | 45.0% | |
| TCCGGTCTCTTCAATCTTGT+TGG | + | chr8_2:62667319-62667338 | None:intergenic | 45.0% | |
| CCACTCATTTCAGCATGAGA+AGG | + | chr8_2:62667636-62667655 | None:intergenic | 45.0% | |
| CCTTCTCATGCTGAAATGAG+TGG | - | chr8_2:62667633-62667652 | Msa1260620:intron | 45.0% | |
| ACTAGGTTGTGATAAAGCCC+TGG | - | chr8_2:62667808-62667827 | Msa1260620:intron | 45.0% | |
| !! | AATTTAATTAACTTTAATTA+GGG | - | chr8_2:62665722-62665741 | Msa1260620:three_prime_UTR | 5.0% |
| GGAATCGAATTTGGCGGGAA+TGG | - | chr8_2:62665382-62665401 | Msa1260620:three_prime_UTR | 50.0% | |
| TCGAATTTGGCGGGAATGGA+AGG | - | chr8_2:62665386-62665405 | Msa1260620:three_prime_UTR | 50.0% | |
| !! | GAGCGACGCTGTTTTCGAAT+CGG | - | chr8_2:62665424-62665443 | Msa1260620:three_prime_UTR | 50.0% |
| AGCATCCACCAAGCTCAATG+CGG | - | chr8_2:62665623-62665642 | Msa1260620:three_prime_UTR | 50.0% | |
| AGTAGCTTCCGCATTGAGCT+TGG | + | chr8_2:62665634-62665653 | None:intergenic | 50.0% | |
| TGCTATTGCGGCCCATATTG+TGG | - | chr8_2:62666019-62666038 | Msa1260620:CDS | 50.0% | |
| !! | CTTGAGTCGAAGTTCTGAGG+CGG | + | chr8_2:62667280-62667299 | None:intergenic | 50.0% |
| AGCTTCCGCATTGAGCTTGG+TGG | + | chr8_2:62665631-62665650 | None:intergenic | 55.0% | |
| ! | GATCCCGTGCTACTCAGAAC+TGG | - | chr8_2:62666716-62666735 | Msa1260620:intron | 55.0% |
| GCGGTTGCCATAATCTCTGC+AGG | + | chr8_2:62667261-62667280 | None:intergenic | 55.0% | |
| TGGGCGAAGGCAGAAGCTAG+AGG | - | chr8_2:62667686-62667705 | Msa1260620:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 62665331 | 62668081 | 62665331 | ID=Msa1260620;Name=Msa1260620 |
| chr8_2 | mRNA | 62665331 | 62668081 | 62665331 | ID=Msa1260620-mRNA-1;Parent=Msa1260620;Name=Msa1260620-mRNA-1;_AED=0.11;_eAED=0.11;_QI=70|1|1|1|1|1|7|530|246 |
| chr8_2 | exon | 62665331 | 62665922 | 62665331 | ID=Msa1260620-mRNA-1:exon:19944;Parent=Msa1260620-mRNA-1 |
| chr8_2 | exon | 62666010 | 62666147 | 62666010 | ID=Msa1260620-mRNA-1:exon:19943;Parent=Msa1260620-mRNA-1 |
| chr8_2 | exon | 62666750 | 62666879 | 62666750 | ID=Msa1260620-mRNA-1:exon:19942;Parent=Msa1260620-mRNA-1 |
| chr8_2 | exon | 62666990 | 62667082 | 62666990 | ID=Msa1260620-mRNA-1:exon:19941;Parent=Msa1260620-mRNA-1 |
| chr8_2 | exon | 62667486 | 62667611 | 62667486 | ID=Msa1260620-mRNA-1:exon:19940;Parent=Msa1260620-mRNA-1 |
| chr8_2 | exon | 62667735 | 62667792 | 62667735 | ID=Msa1260620-mRNA-1:exon:19939;Parent=Msa1260620-mRNA-1 |
| chr8_2 | exon | 62667878 | 62668081 | 62667878 | ID=Msa1260620-mRNA-1:exon:19938;Parent=Msa1260620-mRNA-1 |
| chr8_2 | five_prime_UTR | 62668012 | 62668081 | 62668012 | ID=Msa1260620-mRNA-1:five_prime_utr;Parent=Msa1260620-mRNA-1 |
| chr8_2 | CDS | 62667878 | 62668011 | 62667878 | ID=Msa1260620-mRNA-1:cds;Parent=Msa1260620-mRNA-1 |
| chr8_2 | CDS | 62667735 | 62667792 | 62667735 | ID=Msa1260620-mRNA-1:cds;Parent=Msa1260620-mRNA-1 |
| chr8_2 | CDS | 62667486 | 62667611 | 62667486 | ID=Msa1260620-mRNA-1:cds;Parent=Msa1260620-mRNA-1 |
| chr8_2 | CDS | 62666990 | 62667082 | 62666990 | ID=Msa1260620-mRNA-1:cds;Parent=Msa1260620-mRNA-1 |
| chr8_2 | CDS | 62666750 | 62666879 | 62666750 | ID=Msa1260620-mRNA-1:cds;Parent=Msa1260620-mRNA-1 |
| chr8_2 | CDS | 62666010 | 62666147 | 62666010 | ID=Msa1260620-mRNA-1:cds;Parent=Msa1260620-mRNA-1 |
| chr8_2 | CDS | 62665861 | 62665922 | 62665861 | ID=Msa1260620-mRNA-1:cds;Parent=Msa1260620-mRNA-1 |
| chr8_2 | three_prime_UTR | 62665331 | 62665860 | 62665331 | ID=Msa1260620-mRNA-1:three_prime_utr;Parent=Msa1260620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
