Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1213520 | sp|Q2V0Z5|MIS12_ARATH | 41.803 | 244 | 124 | 7 | 1 | 239 | 1 | 231 | 2.65e-53 | 175 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1213520 | G7JT53 | 93.496 | 246 | 16 | 0 | 1 | 246 | 4 | 249 | 8.31e-171 | 480 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003890 | Msa1213520 | 0.803097 | 4.100397e-49 | -8.615850e-47 |
| Msa0011660 | Msa1213520 | -0.802088 | 6.621836e-49 | -8.615850e-47 |
| Msa0084380 | Msa1213520 | 0.800437 | 1.441934e-48 | -8.615850e-47 |
| Msa0618470 | Msa1213520 | 0.805017 | 1.635157e-49 | -8.615850e-47 |
| Msa0632740 | Msa1213520 | 0.802856 | 4.600841e-49 | -8.615850e-47 |
| Msa0677410 | Msa1213520 | 0.808382 | 3.184128e-50 | -8.615850e-47 |
| Msa0707250 | Msa1213520 | 0.806345 | 8.606040e-50 | -8.615850e-47 |
| Msa0731940 | Msa1213520 | 0.814965 | 1.177405e-51 | -8.615850e-47 |
| Msa0810220 | Msa1213520 | 0.802334 | 5.892949e-49 | -8.615850e-47 |
| Msa0832340 | Msa1213520 | 0.805643 | 1.208844e-49 | -8.615850e-47 |
| Msa0150840 | Msa1213520 | 0.808355 | 3.225862e-50 | -8.615850e-47 |
| Msa0166560 | Msa1213520 | 0.806607 | 7.578196e-50 | -8.615850e-47 |
| Msa0180500 | Msa1213520 | 0.818688 | 1.720074e-52 | -8.615850e-47 |
| Msa0211150 | Msa1213520 | 0.804625 | 1.974326e-49 | -8.615850e-47 |
| Msa0367870 | Msa1213520 | 0.815232 | 1.027201e-51 | -8.615850e-47 |
| Msa0403640 | Msa1213520 | 0.805581 | 1.245993e-49 | -8.615850e-47 |
| Msa0405130 | Msa1213520 | 0.818241 | 2.172039e-52 | -8.615850e-47 |
| Msa0997370 | Msa1213520 | 0.810047 | 1.399426e-50 | -8.615850e-47 |
| Msa1002000 | Msa1213520 | 0.800106 | 1.683447e-48 | -8.615850e-47 |
| Msa1075540 | Msa1213520 | 0.826198 | 3.094240e-54 | -8.615850e-47 |
| Msa1079230 | Msa1213520 | 0.803024 | 4.245790e-49 | -8.615850e-47 |
| Msa0267370 | Msa1213520 | 0.812067 | 5.107743e-51 | -8.615850e-47 |
| Msa0296820 | Msa1213520 | 0.806083 | 9.770601e-50 | -8.615850e-47 |
| Msa0317970 | Msa1213520 | 0.806762 | 7.026064e-50 | -8.615850e-47 |
| Msa0326480 | Msa1213520 | 0.817697 | 2.882459e-52 | -8.615850e-47 |
| Msa1121490 | Msa1213520 | 0.813136 | 2.981345e-51 | -8.615850e-47 |
| Msa1127750 | Msa1213520 | 0.803878 | 2.824927e-49 | -8.615850e-47 |
| Msa1137570 | Msa1213520 | 0.812496 | 4.117582e-51 | -8.615850e-47 |
| Msa1162780 | Msa1213520 | 0.815539 | 8.779377e-52 | -8.615850e-47 |
| Msa1174910 | Msa1213520 | 0.820684 | 6.023734e-53 | -8.615850e-47 |
| Msa1213520 | Msa1226270 | 0.801464 | 8.896116e-49 | -8.615850e-47 |
| Msa1213520 | Msa1232740 | 0.815546 | 8.747177e-52 | -8.615850e-47 |
| Msa1213520 | Msa1260620 | 0.998773 | 4.328688e-276 | -8.615850e-47 |
| Msa1213520 | Msa1275590 | 0.821696 | 3.519573e-53 | -8.615850e-47 |
| Msa1213520 | Msa1276600 | 0.828298 | 9.714533e-55 | -8.615850e-47 |
| Msa1213520 | Msa1276890 | 0.828788 | 7.399588e-55 | -8.615850e-47 |
| Msa1213520 | Msa1286800 | 0.810248 | 1.266836e-50 | -8.615850e-47 |
| Msa1213520 | Msa1313320 | 0.804728 | 1.879336e-49 | -8.615850e-47 |
| Msa1213520 | Msa1412530 | 0.826567 | 2.527102e-54 | -8.615850e-47 |
| Msa1213520 | Msa1412540 | 0.819217 | 1.304200e-52 | -8.615850e-47 |
| Msa1213520 | Msa1440310 | 0.814115 | 1.815856e-51 | -8.615850e-47 |
| Msa1213520 | Msa1466540 | 0.813618 | 2.336133e-51 | -8.615850e-47 |
| Msa0529890 | Msa1213520 | 0.800588 | 1.343222e-48 | -8.615850e-47 |
| Msa0532990 | Msa1213520 | 0.809172 | 2.158165e-50 | -8.615850e-47 |
| Msa0545700 | Msa1213520 | 0.800752 | 1.243814e-48 | -8.615850e-47 |
| Msa0844450 | Msa1213520 | 0.821355 | 4.219922e-53 | -8.615850e-47 |
| Msa0844490 | Msa1213520 | 0.815500 | 8.956246e-52 | -8.615850e-47 |
| Msa0888130 | Msa1213520 | 0.805287 | 1.435886e-49 | -8.615850e-47 |
| Msa0892080 | Msa1213520 | 0.800041 | 1.735465e-48 | -8.615850e-47 |
| Msa0899980 | Msa1213520 | 0.807043 | 6.129267e-50 | -8.615850e-47 |
| Msa0902510 | Msa1213520 | 0.816598 | 5.092499e-52 | -8.615850e-47 |
| Msa0934890 | Msa1213520 | 0.805649 | 1.205496e-49 | -8.615850e-47 |
| Msa0936300 | Msa1213520 | 0.804995 | 1.652657e-49 | -8.615850e-47 |
| Msa0966750 | Msa1213520 | 0.811729 | 6.053110e-51 | -8.615850e-47 |
| Msa0969810 | Msa1213520 | 0.810496 | 1.119768e-50 | -8.615850e-47 |
| Msa0974070 | Msa1213520 | 0.809320 | 2.005694e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1213520 | MtrunA17_Chr4g0061861 | 93.496 | 246 | 16 | 0 | 1 | 246 | 4 | 249 | 1.60e-174 | 480 |
| Msa1213520 | MtrunA17_Chr4g0062071 | 92.276 | 246 | 16 | 1 | 1 | 246 | 1 | 243 | 8.04e-157 | 435 |
| Msa1213520 | MtrunA17_Chr4g0062041 | 88.889 | 36 | 4 | 0 | 201 | 236 | 2 | 37 | 2.07e-15 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1213520 | AT5G35520.1 | 41.803 | 244 | 124 | 7 | 1 | 239 | 1 | 231 | 2.69e-54 | 175 |
Find 75 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGTCTTCTCAATTTAAT+TGG | 0.103016 | 8_1:-73669750 | Msa1213520:three_prime_UTR |
| CTCTTACGCTGAGTTGTTTC+AGG | 0.143353 | 8_1:-73670776 | Msa1213520:CDS |
| CCCTTTACATATTCCCCTTT+TGG | 0.156078 | 8_1:+73669557 | None:intergenic |
| GAAATTTCGGGAATCGAATT+TGG | 0.161069 | 8_1:-73672035 | Msa1213520:five_prime_UTR |
| ATAGTTGTTTACAGCTTTAT+TGG | 0.213232 | 8_1:-73669500 | Msa1213520:three_prime_UTR |
| TCAAAAGGTTCAATCTGTTT+TGG | 0.255176 | 8_1:-73671598 | Msa1213520:CDS |
| GTACGGTTGGACTGAAATTT+CGG | 0.259504 | 8_1:-73672048 | Msa1213520:five_prime_UTR |
| TATTGGTCTATTTGTTGAAT+TGG | 0.272032 | 8_1:-73669483 | Msa1213520:three_prime_UTR |
| AAGGATTGACAACAATAAAA+TGG | 0.285180 | 8_1:-73670063 | Msa1213520:CDS |
| TACGGTTGGACTGAAATTTC+GGG | 0.288547 | 8_1:-73672047 | Msa1213520:five_prime_UTR |
| CATTGTTAGCTGAGTTTACT+AGG | 0.310089 | 8_1:-73669625 | Msa1213520:three_prime_UTR |
| GGATCAAAAGCTCGCTGTTT+GGG | 0.327066 | 8_1:-73671577 | Msa1213520:CDS |
| TCCGGTCTCTTCAATCTTGT+TGG | 0.331304 | 8_1:+73670100 | None:intergenic |
| TTGTGTTCCTGCAGAGATTA+TGG | 0.353919 | 8_1:-73670165 | Msa1213520:intron |
| ATAGAATTAGAAATAGTCTT+TGG | 0.355229 | 8_1:+73672075 | None:intergenic |
| TCCTGGTTCTACTTCCAATC+TGG | 0.359101 | 8_1:-73671060 | Msa1213520:CDS |
| GAACATACATTGAGAGTGTT+TGG | 0.361941 | 8_1:+73671504 | None:intergenic |
| TCCAAAGTAAAATACATTAC+AGG | 0.366210 | 8_1:-73669691 | Msa1213520:three_prime_UTR |
| GGAATCGAATTTGGCGGGAA+TGG | 0.369873 | 8_1:-73672026 | Msa1213520:exon |
| CATTTCAAATGTATGGTACT+TGG | 0.380857 | 8_1:-73669393 | Msa1213520:three_prime_UTR |
| TTGAATTGGTTCTTAATTGA+TGG | 0.382931 | 8_1:-73669469 | Msa1213520:three_prime_UTR |
| TCTGTCTTCTCAATTTAATT+GGG | 0.386873 | 8_1:-73669749 | Msa1213520:three_prime_UTR |
| GTTTGGCAATTGAAAACCTT+CGG | 0.391014 | 8_1:+73671521 | None:intergenic |
| CATCAAAGATTTAGCAATCC+AGG | 0.391347 | 8_1:+73669590 | None:intergenic |
| TGGATCAAAAGCTCGCTGTT+TGG | 0.391728 | 8_1:-73671578 | Msa1213520:CDS |
| TTTATTCGTAGTCTATTAGT+TGG | 0.395060 | 8_1:-73669811 | Msa1213520:three_prime_UTR |
| GTATATATTTCTCATCATAC+TGG | 0.412424 | 8_1:-73669860 | Msa1213520:three_prime_UTR |
| TTTGGCAATTGAAAACCTTC+GGG | 0.426623 | 8_1:+73671522 | None:intergenic |
| TCAGAACTTCGACTCAAGAT+AGG | 0.430690 | 8_1:-73670134 | Msa1213520:CDS |
| AACCACTCATTTCAAATGTA+TGG | 0.432061 | 8_1:-73669400 | Msa1213520:three_prime_UTR |
| TGATGAGATTTCTGCCCAAA+AGG | 0.434675 | 8_1:-73669572 | Msa1213520:three_prime_UTR |
| TGTTGATTGCATTCGTCAAA+AGG | 0.440105 | 8_1:-73671613 | Msa1213520:CDS |
| TAATTCTATCATTGTACGGT+TGG | 0.453142 | 8_1:-73672061 | Msa1213520:five_prime_UTR |
| AGTAGCTTCCGCATTGAGCT+TGG | 0.467482 | 8_1:+73671777 | None:intergenic |
| TCTGCTATATATGCTTCTAA+AGG | 0.478873 | 8_1:-73670035 | Msa1213520:intron |
| AGCGAATCTCTACTTTCTAA+AGG | 0.484540 | 8_1:+73669362 | None:intergenic |
| CTGAGCATCTAATTCCAGAT+TGG | 0.485974 | 8_1:+73671046 | None:intergenic |
| TCGAATTTGGCGGGAATGGA+AGG | 0.492575 | 8_1:-73672022 | Msa1213520:exon |
| TTTCTAATTCTATCATTGTA+CGG | 0.497693 | 8_1:-73672065 | Msa1213520:five_prime_UTR |
| CCTTCTCATGCTGAAATGAG+TGG | 0.498005 | 8_1:-73669783 | Msa1213520:three_prime_UTR |
| CCCAAAAGGGGAATATGTAA+AGG | 0.498189 | 8_1:-73669558 | Msa1213520:three_prime_UTR |
| TAAAATACATTACAGGTCAC+AGG | 0.498412 | 8_1:-73669684 | Msa1213520:three_prime_UTR |
| ATGAAACCTGTGTGAGATGT+TGG | 0.501041 | 8_1:+73671746 | None:intergenic |
| TCTTACGCTGAGTTGTTTCA+GGG | 0.501163 | 8_1:-73670775 | Msa1213520:intron |
| CCAAAAGGGGAATATGTAAA+GGG | 0.502598 | 8_1:-73669557 | Msa1213520:three_prime_UTR |
| GATGAGATTTCTGCCCAAAA+GGG | 0.504314 | 8_1:-73669571 | Msa1213520:three_prime_UTR |
| AGTGGGAATGTCATTGATCC+TGG | 0.506246 | 8_1:-73671077 | Msa1213520:CDS |
| AGCTTCCGCATTGAGCTTGG+TGG | 0.510752 | 8_1:+73671780 | None:intergenic |
| TGAAACCTGTGTGAGATGTT+GGG | 0.524390 | 8_1:+73671747 | None:intergenic |
| TTTCGGGAATCGAATTTGGC+GGG | 0.533214 | 8_1:-73672031 | Msa1213520:five_prime_UTR |
| ACTTCGTTGAAGAAGAGTTG+TGG | 0.543092 | 8_1:+73671947 | None:intergenic |
| CTTCAAATTTCGTATTAGAG+AGG | 0.553512 | 8_1:+73669925 | None:intergenic |
| TATCTTGAGTCGAAGTTCTG+AGG | 0.553557 | 8_1:+73670136 | None:intergenic |
| TCCAGATTGGAAGTAGAACC+AGG | 0.560356 | 8_1:+73671059 | None:intergenic |
| ATTTCGGGAATCGAATTTGG+CGG | 0.561030 | 8_1:-73672032 | Msa1213520:five_prime_UTR |
| ATCAAAGATTTAGCAATCCA+GGG | 0.563272 | 8_1:+73669591 | None:intergenic |
| TACCATACATTTGAAATGAG+TGG | 0.565072 | 8_1:+73669398 | None:intergenic |
| ATGCTCAGTTAGAATCATTG+AGG | 0.569791 | 8_1:-73671031 | Msa1213520:CDS |
| TTCTTTCAGGGTGAAACAAG+TGG | 0.571772 | 8_1:-73671095 | Msa1213520:intron |
| ACTAGGTTGTGATAAAGCCC+TGG | 0.575518 | 8_1:-73669608 | Msa1213520:three_prime_UTR |
| ACCAACAAGATTGAAGAGAC+CGG | 0.579940 | 8_1:-73670101 | Msa1213520:CDS |
| GTCAGTCTTCTCACAATGCT+CGG | 0.580367 | 8_1:-73670834 | Msa1213520:CDS |
| CCACTCATTTCAGCATGAGA+AGG | 0.582573 | 8_1:+73669783 | None:intergenic |
| GACTACGAATAAACAATCAC+AGG | 0.584700 | 8_1:+73669821 | None:intergenic |
| TTCTCAATTTAATTGGGCGA+AGG | 0.594361 | 8_1:-73669743 | Msa1213520:three_prime_UTR |
| ATGAGATTTCTGCCCAAAAG+GGG | 0.597012 | 8_1:-73669570 | Msa1213520:three_prime_UTR |
| TCTTTCAGGGTGAAACAAGT+GGG | 0.606547 | 8_1:-73671094 | Msa1213520:intron |
| TAAACAACTATTCCTTAACA+TGG | 0.625217 | 8_1:+73669512 | None:intergenic |
| TGGGCGAAGGCAGAAGCTAG+AGG | 0.634144 | 8_1:-73669730 | Msa1213520:three_prime_UTR |
| CTTGAGTCGAAGTTCTGAGG+CGG | 0.647508 | 8_1:+73670139 | None:intergenic |
| AAAATACATTACAGGTCACA+GGG | 0.652192 | 8_1:-73669683 | Msa1213520:three_prime_UTR |
| AGTAGAAATCGAAAGTATCG+AGG | 0.666017 | 8_1:+73671900 | None:intergenic |
| AAGATCCCAACATCTCACAC+AGG | 0.719465 | 8_1:-73671752 | Msa1213520:intron |
| AGCATCCACCAAGCTCAATG+CGG | 0.721723 | 8_1:-73671785 | Msa1213520:CDS |
| CAATGCTCGGTATATCAACG+AGG | 0.745621 | 8_1:-73670821 | Msa1213520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATTTAATTAACTTTAATT+AGG | - | chr8_1:73669747-73669766 | Msa1213520:three_prime_UTR | 10.0% |
| !! | TAAAAATGTATTATATGATG+TGG | - | chr8_1:73670194-73670213 | Msa1213520:intron | 15.0% |
| !! | CTTAAGAAAAAATTATACAA+CGG | + | chr8_1:73670309-73670328 | None:intergenic | 15.0% |
| !!! | AATATTTTACTAGCAAATAA+TGG | - | chr8_1:73670928-73670947 | Msa1213520:intron | 15.0% |
| !!! | TAGAACAATAAATGATATTT+TGG | + | chr8_1:73671428-73671447 | None:intergenic | 15.0% |
| !!! | ATGTTTAGAAATAATTTTAC+TGG | - | chr8_1:73671994-73672013 | Msa1213520:CDS | 15.0% |
| !! | ATAGAATTAGAAATAGTCTT+TGG | + | chr8_1:73669362-73669381 | None:intergenic | 20.0% |
| !! | TTTCTAATTCTATCATTGTA+CGG | - | chr8_1:73669369-73669388 | Msa1213520:three_prime_UTR | 20.0% |
| !!! | AAATTAAATCTTGTTGTTTC+AGG | - | chr8_1:73669624-73669643 | Msa1213520:three_prime_UTR | 20.0% |
| !!! | AATTAAATCTTGTTGTTTCA+GGG | - | chr8_1:73669625-73669644 | Msa1213520:three_prime_UTR | 20.0% |
| !! | TAAGCAATTTCTTTGAATAA+TGG | + | chr8_1:73669724-73669743 | None:intergenic | 20.0% |
| !! | TAATCTCTTTAAATAAAGGT+AGG | + | chr8_1:73670066-73670085 | None:intergenic | 20.0% |
| !! | CCTTTAATCTCTTTAAATAA+AGG | + | chr8_1:73670070-73670089 | None:intergenic | 20.0% |
| !!! | CCTTTATTTAAAGAGATTAA+AGG | - | chr8_1:73670067-73670086 | Msa1213520:CDS | 20.0% |
| !! | CAAAAGAACATTGAATTATT+TGG | - | chr8_1:73670843-73670862 | Msa1213520:CDS | 20.0% |
| !! | AACATTGAATTATTTGGATA+TGG | - | chr8_1:73670849-73670868 | Msa1213520:CDS | 20.0% |
| !! | TATAAAACACAATCAAAAGA+CGG | + | chr8_1:73670968-73670987 | None:intergenic | 20.0% |
| !!! | TCAGTACATTTTTACATTTA+TGG | - | chr8_1:73671246-73671265 | Msa1213520:intron | 20.0% |
| !! | AAAAAACATTATCCATGTTA+AGG | - | chr8_1:73671910-73671929 | Msa1213520:CDS | 20.0% |
| !! | CAATTTCTTTGAATAATGGA+AGG | + | chr8_1:73669720-73669739 | None:intergenic | 25.0% |
| !!! | TGATTATTTGTTTCTGTGAA+AGG | - | chr8_1:73669797-73669816 | Msa1213520:three_prime_UTR | 25.0% |
| !!! | GATTATTTGTTTCTGTGAAA+GGG | - | chr8_1:73669798-73669817 | Msa1213520:three_prime_UTR | 25.0% |
| ! | GAAGAGAAAAACAATGATAA+AGG | + | chr8_1:73669893-73669912 | None:intergenic | 25.0% |
| !! | TTGTTGTTATTCGCTAATTA+TGG | - | chr8_1:73669962-73669981 | Msa1213520:intron | 25.0% |
| ! | AATTGTATTGTTTGATGTCT+TGG | + | chr8_1:73670145-73670164 | None:intergenic | 25.0% |
| !!! | AGGTTTTAGAAAAGAGATTA+AGG | + | chr8_1:73670282-73670301 | None:intergenic | 25.0% |
| ! | AAAAATTATACAACGGAACA+AGG | + | chr8_1:73670302-73670321 | None:intergenic | 25.0% |
| !! | TAAAGTCTTCATTTTGTAGA+TGG | - | chr8_1:73670468-73670487 | Msa1213520:intron | 25.0% |
| !!! | GTTTCTCATTTGATTTTTCT+TGG | - | chr8_1:73670510-73670529 | Msa1213520:intron | 25.0% |
| ! | CTTAATACATACAAACAAAC+AGG | + | chr8_1:73670780-73670799 | None:intergenic | 25.0% |
| !! | TATATTACTGACTGTGTAAT+TGG | + | chr8_1:73670891-73670910 | None:intergenic | 25.0% |
| ! | TAATGTCTTTCGTTTCTATA+TGG | - | chr8_1:73670992-73671011 | Msa1213520:intron | 25.0% |
| !! | CAAGATAAGATTTGTTTGAT+AGG | - | chr8_1:73671021-73671040 | Msa1213520:CDS | 25.0% |
| !! | GTTTCATTTCTCTTTTACTA+AGG | + | chr8_1:73671107-73671126 | None:intergenic | 25.0% |
| ! | AAATAATGTCAACAATTTCC+CGG | - | chr8_1:73671127-73671146 | Msa1213520:intron | 25.0% |
| ! | AAGGATTGACAACAATAAAA+TGG | - | chr8_1:73671371-73671390 | Msa1213520:intron | 25.0% |
| !! | CTACATGAATTAATTTTCAC+AGG | - | chr8_1:73671445-73671464 | Msa1213520:intron | 25.0% |
| ! | AAATGTTCAATTCAGAACTA+TGG | + | chr8_1:73671478-73671497 | None:intergenic | 25.0% |
| ! | GTATATATTTCTCATCATAC+TGG | - | chr8_1:73671574-73671593 | Msa1213520:CDS | 25.0% |
| ! | TTTATTCGTAGTCTATTAGT+TGG | - | chr8_1:73671623-73671642 | Msa1213520:intron | 25.0% |
| ! | TTCTGTCTTCTCAATTTAAT+TGG | - | chr8_1:73671684-73671703 | Msa1213520:intron | 25.0% |
| ! | TCTGTCTTCTCAATTTAATT+GGG | - | chr8_1:73671685-73671704 | Msa1213520:intron | 25.0% |
| ! | TCCAAAGTAAAATACATTAC+AGG | - | chr8_1:73671743-73671762 | Msa1213520:intron | 25.0% |
| !! | ACCTGTAATGTATTTTACTT+TGG | + | chr8_1:73671747-73671766 | None:intergenic | 25.0% |
| ! | TAAACAACTATTCCTTAACA+TGG | + | chr8_1:73671925-73671944 | None:intergenic | 25.0% |
| !! | ATAGTTGTTTACAGCTTTAT+TGG | - | chr8_1:73671934-73671953 | Msa1213520:CDS | 25.0% |
| !! | TATTGGTCTATTTGTTGAAT+TGG | - | chr8_1:73671951-73671970 | Msa1213520:CDS | 25.0% |
| !! | TTGAATTGGTTCTTAATTGA+TGG | - | chr8_1:73671965-73671984 | Msa1213520:CDS | 25.0% |
| TAATTCTATCATTGTACGGT+TGG | - | chr8_1:73669373-73669392 | Msa1213520:three_prime_UTR | 30.0% | |
| ! | TCAAAAGGTTCAATCTGTTT+TGG | - | chr8_1:73669836-73669855 | Msa1213520:three_prime_UTR | 30.0% |
| ATTAGCGAATAACAACAAGT+TGG | + | chr8_1:73669960-73669979 | None:intergenic | 30.0% | |
| CATCAAAATCTATGCTATTG+CGG | - | chr8_1:73670025-73670044 | Msa1213520:intron | 30.0% | |
| AAGAGATTAAAGGAAATGCA+CGG | - | chr8_1:73670077-73670096 | Msa1213520:CDS | 30.0% | |
| ! | AAGAAAGTGTACTTTCTTTC+AGG | - | chr8_1:73670326-73670345 | Msa1213520:intron | 30.0% |
| ! | AGAAAGTGTACTTTCTTTCA+GGG | - | chr8_1:73670327-73670346 | Msa1213520:intron | 30.0% |
| ATTGAGGAAAAAACTAGTTG+AGG | - | chr8_1:73670419-73670438 | Msa1213520:intron | 30.0% | |
| CAAACAAACAGGTATCAAAA+TGG | + | chr8_1:73670769-73670788 | None:intergenic | 30.0% | |
| !! | CTAGCAAATAATGGACATTT+AGG | - | chr8_1:73670937-73670956 | Msa1213520:intron | 30.0% |
| ! | GATAAGATTTGTTTGATAGG+AGG | - | chr8_1:73671024-73671043 | Msa1213520:CDS | 30.0% |
| TTGATAGGAGGACTATATTT+AGG | - | chr8_1:73671036-73671055 | Msa1213520:CDS | 30.0% | |
| TGATAGGAGGACTATATTTA+GGG | - | chr8_1:73671037-73671056 | Msa1213520:CDS | 30.0% | |
| !! | CCTTTTTGCTTTCATTTTTC+CGG | + | chr8_1:73671355-73671374 | None:intergenic | 30.0% |
| TCTGCTATATATGCTTCTAA+AGG | - | chr8_1:73671399-73671418 | Msa1213520:intron | 30.0% | |
| !! | AGTTCTGAATTGAACATTTC+TGG | - | chr8_1:73671479-73671498 | Msa1213520:intron | 30.0% |
| CTTCAAATTTCGTATTAGAG+AGG | + | chr8_1:73671512-73671531 | None:intergenic | 30.0% | |
| TAAAATACATTACAGGTCAC+AGG | - | chr8_1:73671750-73671769 | Msa1213520:intron | 30.0% | |
| AAAATACATTACAGGTCACA+GGG | - | chr8_1:73671751-73671770 | Msa1213520:intron | 30.0% | |
| ATCAAAGATTTAGCAATCCA+GGG | + | chr8_1:73671846-73671865 | None:intergenic | 30.0% | |
| AACCACTCATTTCAAATGTA+TGG | - | chr8_1:73672034-73672053 | Msa1213520:five_prime_UTR | 30.0% | |
| ! | TACCATACATTTGAAATGAG+TGG | + | chr8_1:73672039-73672058 | None:intergenic | 30.0% |
| CATTTCAAATGTATGGTACT+TGG | - | chr8_1:73672041-73672060 | Msa1213520:five_prime_UTR | 30.0% | |
| GAAATTTCGGGAATCGAATT+TGG | - | chr8_1:73669399-73669418 | Msa1213520:three_prime_UTR | 35.0% | |
| !! | AGTAGAAATCGAAAGTATCG+AGG | + | chr8_1:73669537-73669556 | None:intergenic | 35.0% |
| AAGAAGAAGAAGAAGCGAAA+GGG | + | chr8_1:73669573-73669592 | None:intergenic | 35.0% | |
| AAAGAAGAAGAAGAAGCGAA+AGG | + | chr8_1:73669574-73669593 | None:intergenic | 35.0% | |
| ! | TGTTGATTGCATTCGTCAAA+AGG | - | chr8_1:73669821-73669840 | Msa1213520:three_prime_UTR | 35.0% |
| TTTGGCAATTGAAAACCTTC+GGG | + | chr8_1:73669915-73669934 | None:intergenic | 35.0% | |
| GTTTGGCAATTGAAAACCTT+CGG | + | chr8_1:73669916-73669935 | None:intergenic | 35.0% | |
| !! | GAACATACATTGAGAGTGTT+TGG | + | chr8_1:73669933-73669952 | None:intergenic | 35.0% |
| TTCGCTAATTATGGTCAATG+TGG | - | chr8_1:73669971-73669990 | Msa1213520:intron | 35.0% | |
| ATGCTCAGTTAGAATCATTG+AGG | - | chr8_1:73670403-73670422 | Msa1213520:intron | 35.0% | |
| TAGTTGAGGTAATAAGAGTG+TGG | - | chr8_1:73670433-73670452 | Msa1213520:intron | 35.0% | |
| ! | TTGGTAATAAATGTGCTGTC+AGG | - | chr8_1:73670529-73670548 | Msa1213520:intron | 35.0% |
| TAATAAATGTGCTGTCAGGT+GGG | - | chr8_1:73670533-73670552 | Msa1213520:intron | 35.0% | |
| GATAGGAGGACTATATTTAG+GGG | - | chr8_1:73671038-73671057 | Msa1213520:CDS | 35.0% | |
| ATAGGAGGACTATATTTAGG+GGG | - | chr8_1:73671039-73671058 | Msa1213520:CDS | 35.0% | |
| CTGACCTATGATACCTATAT+TGG | + | chr8_1:73671067-73671086 | None:intergenic | 35.0% | |
| CAATATAGGTATCATAGGTC+AGG | - | chr8_1:73671065-73671084 | Msa1213520:CDS | 35.0% | |
| CAAGTAGGCAAGAATGTATT+TGG | - | chr8_1:73671165-73671184 | Msa1213520:intron | 35.0% | |
| CCGGAAAAATGAAAGCAAAA+AGG | - | chr8_1:73671352-73671371 | Msa1213520:intron | 35.0% | |
| !! | AATTGAACATTTCTGGTTGC+AGG | - | chr8_1:73671486-73671505 | Msa1213520:intron | 35.0% |
| GACTACGAATAAACAATCAC+AGG | + | chr8_1:73671616-73671635 | None:intergenic | 35.0% | |
| TTCTCAATTTAATTGGGCGA+AGG | - | chr8_1:73671691-73671710 | Msa1213520:intron | 35.0% | |
| CATTGTTAGCTGAGTTTACT+AGG | - | chr8_1:73671809-73671828 | Msa1213520:intron | 35.0% | |
| CATCAAAGATTTAGCAATCC+AGG | + | chr8_1:73671847-73671866 | None:intergenic | 35.0% | |
| ! | CCTTTACATATTCCCCTTTT+GGG | + | chr8_1:73671879-73671898 | None:intergenic | 35.0% |
| CCAAAAGGGGAATATGTAAA+GGG | - | chr8_1:73671877-73671896 | Msa1213520:intron | 35.0% | |
| AGCGAATCTCTACTTTCTAA+AGG | + | chr8_1:73672075-73672094 | None:intergenic | 35.0% | |
| GTACGGTTGGACTGAAATTT+CGG | - | chr8_1:73669386-73669405 | Msa1213520:three_prime_UTR | 40.0% | |
| TACGGTTGGACTGAAATTTC+GGG | - | chr8_1:73669387-73669406 | Msa1213520:three_prime_UTR | 40.0% | |
| ATTTCGGGAATCGAATTTGG+CGG | - | chr8_1:73669402-73669421 | Msa1213520:three_prime_UTR | 40.0% | |
| ACTTCGTTGAAGAAGAGTTG+TGG | + | chr8_1:73669490-73669509 | None:intergenic | 40.0% | |
| AGAAGAAGAAGAAGCGAAAG+GGG | + | chr8_1:73669572-73669591 | None:intergenic | 40.0% | |
| TGAAACCTGTGTGAGATGTT+GGG | + | chr8_1:73669690-73669709 | None:intergenic | 40.0% | |
| ATGAAACCTGTGTGAGATGT+TGG | + | chr8_1:73669691-73669710 | None:intergenic | 40.0% | |
| !! | CATTGTTTTTCTCTTCCCGA+AGG | - | chr8_1:73669897-73669916 | Msa1213520:CDS | 40.0% |
| ATGTCTTGGCAAGTTGTGAT+TGG | + | chr8_1:73670131-73670150 | None:intergenic | 40.0% | |
| TTCTTTCAGGGTGAAACAAG+TGG | - | chr8_1:73670339-73670358 | Msa1213520:intron | 40.0% | |
| TCTTTCAGGGTGAAACAAGT+GGG | - | chr8_1:73670340-73670359 | Msa1213520:intron | 40.0% | |
| CTGAGCATCTAATTCCAGAT+TGG | + | chr8_1:73670391-73670410 | None:intergenic | 40.0% | |
| GTAATAAATGTGCTGTCAGG+TGG | - | chr8_1:73670532-73670551 | Msa1213520:intron | 40.0% | |
| AATAAATGTGCTGTCAGGTG+GGG | - | chr8_1:73670534-73670553 | Msa1213520:intron | 40.0% | |
| ! | TCTTACGCTGAGTTGTTTCA+GGG | - | chr8_1:73670659-73670678 | Msa1213520:intron | 40.0% |
| !! | AATACCAGTTCTGAGTAGCA+CGG | + | chr8_1:73670741-73670760 | None:intergenic | 40.0% |
| !! | TATTTAGGGGGCACCAATAT+AGG | - | chr8_1:73671051-73671070 | Msa1213520:CDS | 40.0% |
| GGCACCAATATAGGTATCAT+AGG | - | chr8_1:73671060-73671079 | Msa1213520:CDS | 40.0% | |
| AGCTCTGCATTATTGCAAGT+AGG | - | chr8_1:73671150-73671169 | Msa1213520:intron | 40.0% | |
| TTGTGTTCCTGCAGAGATTA+TGG | - | chr8_1:73671269-73671288 | Msa1213520:intron | 40.0% | |
| TATCTTGAGTCGAAGTTCTG+AGG | + | chr8_1:73671301-73671320 | None:intergenic | 40.0% | |
| TCAGAACTTCGACTCAAGAT+AGG | - | chr8_1:73671300-73671319 | Msa1213520:intron | 40.0% | |
| ACCAACAAGATTGAAGAGAC+CGG | - | chr8_1:73671333-73671352 | Msa1213520:intron | 40.0% | |
| TGATGAGATTTCTGCCCAAA+AGG | - | chr8_1:73671862-73671881 | Msa1213520:intron | 40.0% | |
| GATGAGATTTCTGCCCAAAA+GGG | - | chr8_1:73671863-73671882 | Msa1213520:intron | 40.0% | |
| ATGAGATTTCTGCCCAAAAG+GGG | - | chr8_1:73671864-73671883 | Msa1213520:intron | 40.0% | |
| CCCAAAAGGGGAATATGTAA+AGG | - | chr8_1:73671876-73671895 | Msa1213520:intron | 40.0% | |
| ! | CCCTTTACATATTCCCCTTT+TGG | + | chr8_1:73671880-73671899 | None:intergenic | 40.0% |
| TTTCGGGAATCGAATTTGGC+GGG | - | chr8_1:73669403-73669422 | Msa1213520:three_prime_UTR | 45.0% | |
| !! | AAGCGAAAGGGGTTAGTTAC+TGG | + | chr8_1:73669561-73669580 | None:intergenic | 45.0% |
| AAGATCCCAACATCTCACAC+AGG | - | chr8_1:73669682-73669701 | Msa1213520:three_prime_UTR | 45.0% | |
| TGGATCAAAAGCTCGCTGTT+TGG | - | chr8_1:73669856-73669875 | Msa1213520:three_prime_UTR | 45.0% | |
| GGATCAAAAGCTCGCTGTTT+GGG | - | chr8_1:73669857-73669876 | Msa1213520:three_prime_UTR | 45.0% | |
| !! | ACTGCAATGGACTGTGATTG+AGG | + | chr8_1:73669997-73670016 | None:intergenic | 45.0% |
| TGATGTCTCTGTGACTGCAA+TGG | + | chr8_1:73670010-73670029 | None:intergenic | 45.0% | |
| AAGGTAGGCGACCACAATAT+GGG | + | chr8_1:73670051-73670070 | None:intergenic | 45.0% | |
| AAAGGTAGGCGACCACAATA+TGG | + | chr8_1:73670052-73670071 | None:intergenic | 45.0% | |
| AGTGGGAATGTCATTGATCC+TGG | - | chr8_1:73670357-73670376 | Msa1213520:intron | 45.0% | |
| !! | TCCTGGTTCTACTTCCAATC+TGG | - | chr8_1:73670374-73670393 | Msa1213520:intron | 45.0% |
| TCCAGATTGGAAGTAGAACC+AGG | + | chr8_1:73670378-73670397 | None:intergenic | 45.0% | |
| GTCAGTCTTCTCACAATGCT+CGG | - | chr8_1:73670600-73670619 | Msa1213520:intron | 45.0% | |
| CAATGCTCGGTATATCAACG+AGG | - | chr8_1:73670613-73670632 | Msa1213520:intron | 45.0% | |
| ! | CTCTTACGCTGAGTTGTTTC+AGG | - | chr8_1:73670658-73670677 | Msa1213520:intron | 45.0% |
| !! | ATACCAGTTCTGAGTAGCAC+GGG | + | chr8_1:73670740-73670759 | None:intergenic | 45.0% |
| TTGCAATAATGCAGAGCTCC+GGG | + | chr8_1:73671148-73671167 | None:intergenic | 45.0% | |
| CTTGCAATAATGCAGAGCTC+CGG | + | chr8_1:73671149-73671168 | None:intergenic | 45.0% | |
| TCCGGTCTCTTCAATCTTGT+TGG | + | chr8_1:73671337-73671356 | None:intergenic | 45.0% | |
| CCACTCATTTCAGCATGAGA+AGG | + | chr8_1:73671654-73671673 | None:intergenic | 45.0% | |
| CCTTCTCATGCTGAAATGAG+TGG | - | chr8_1:73671651-73671670 | Msa1213520:intron | 45.0% | |
| ACTAGGTTGTGATAAAGCCC+TGG | - | chr8_1:73671826-73671845 | Msa1213520:intron | 45.0% | |
| !! | AATTTAATTAACTTTAATTA+GGG | - | chr8_1:73669748-73669767 | Msa1213520:three_prime_UTR | 5.0% |
| GGAATCGAATTTGGCGGGAA+TGG | - | chr8_1:73669408-73669427 | Msa1213520:three_prime_UTR | 50.0% | |
| TCGAATTTGGCGGGAATGGA+AGG | - | chr8_1:73669412-73669431 | Msa1213520:three_prime_UTR | 50.0% | |
| !! | GAGCGACGCTGTTTTCGAAT+CGG | - | chr8_1:73669450-73669469 | Msa1213520:three_prime_UTR | 50.0% |
| AGCATCCACCAAGCTCAATG+CGG | - | chr8_1:73669649-73669668 | Msa1213520:three_prime_UTR | 50.0% | |
| AGTAGCTTCCGCATTGAGCT+TGG | + | chr8_1:73669660-73669679 | None:intergenic | 50.0% | |
| TGCTATTGCGGCCCATATTG+TGG | - | chr8_1:73670037-73670056 | Msa1213520:CDS | 50.0% | |
| !! | CTTGAGTCGAAGTTCTGAGG+CGG | + | chr8_1:73671298-73671317 | None:intergenic | 50.0% |
| AGCTTCCGCATTGAGCTTGG+TGG | + | chr8_1:73669657-73669676 | None:intergenic | 55.0% | |
| ! | GATCCCGTGCTACTCAGAAC+TGG | - | chr8_1:73670734-73670753 | Msa1213520:intron | 55.0% |
| GCGGTTGCCATAATCTCTGC+AGG | + | chr8_1:73671279-73671298 | None:intergenic | 55.0% | |
| TGGGCGAAGGCAGAAGCTAG+AGG | - | chr8_1:73671704-73671723 | Msa1213520:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 73669357 | 73672099 | 73669357 | ID=Msa1213520;Name=Msa1213520 |
| chr8_1 | mRNA | 73669357 | 73672099 | 73669357 | ID=Msa1213520-mRNA-1;Parent=Msa1213520;Name=Msa1213520-mRNA-1;_AED=0.08;_eAED=0.08;_QI=70|1|1|1|1|1|7|530|246 |
| chr8_1 | exon | 73669357 | 73669948 | 73669357 | ID=Msa1213520-mRNA-1:exon:25128;Parent=Msa1213520-mRNA-1 |
| chr8_1 | exon | 73670036 | 73670173 | 73670036 | ID=Msa1213520-mRNA-1:exon:25127;Parent=Msa1213520-mRNA-1 |
| chr8_1 | exon | 73670776 | 73670905 | 73670776 | ID=Msa1213520-mRNA-1:exon:25126;Parent=Msa1213520-mRNA-1 |
| chr8_1 | exon | 73671016 | 73671108 | 73671016 | ID=Msa1213520-mRNA-1:exon:25125;Parent=Msa1213520-mRNA-1 |
| chr8_1 | exon | 73671512 | 73671637 | 73671512 | ID=Msa1213520-mRNA-1:exon:25124;Parent=Msa1213520-mRNA-1 |
| chr8_1 | exon | 73671753 | 73671810 | 73671753 | ID=Msa1213520-mRNA-1:exon:25123;Parent=Msa1213520-mRNA-1 |
| chr8_1 | exon | 73671896 | 73672099 | 73671896 | ID=Msa1213520-mRNA-1:exon:25122;Parent=Msa1213520-mRNA-1 |
| chr8_1 | five_prime_UTR | 73672030 | 73672099 | 73672030 | ID=Msa1213520-mRNA-1:five_prime_utr;Parent=Msa1213520-mRNA-1 |
| chr8_1 | CDS | 73671896 | 73672029 | 73671896 | ID=Msa1213520-mRNA-1:cds;Parent=Msa1213520-mRNA-1 |
| chr8_1 | CDS | 73671753 | 73671810 | 73671753 | ID=Msa1213520-mRNA-1:cds;Parent=Msa1213520-mRNA-1 |
| chr8_1 | CDS | 73671512 | 73671637 | 73671512 | ID=Msa1213520-mRNA-1:cds;Parent=Msa1213520-mRNA-1 |
| chr8_1 | CDS | 73671016 | 73671108 | 73671016 | ID=Msa1213520-mRNA-1:cds;Parent=Msa1213520-mRNA-1 |
| chr8_1 | CDS | 73670776 | 73670905 | 73670776 | ID=Msa1213520-mRNA-1:cds;Parent=Msa1213520-mRNA-1 |
| chr8_1 | CDS | 73670036 | 73670173 | 73670036 | ID=Msa1213520-mRNA-1:cds;Parent=Msa1213520-mRNA-1 |
| chr8_1 | CDS | 73669887 | 73669948 | 73669887 | ID=Msa1213520-mRNA-1:cds;Parent=Msa1213520-mRNA-1 |
| chr8_1 | three_prime_UTR | 73669357 | 73669886 | 73669357 | ID=Msa1213520-mRNA-1:three_prime_utr;Parent=Msa1213520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
