AlfalfaGEDB | Msa1272610

M. sativa cultivar zhongmu-4 / Msa1272610

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1272610	XP_013444029.1	87.358	530	17	2	1	480	1	530	0.0	944

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1272610	A0A072TLF7	87.358	530	17	2	1	480	1	530	0.0	944

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0008220	Msa1272610	0.802918	4.466828e-49	-8.615850e-47
Msa0043500	Msa1272610	0.801119	1.046400e-48	-8.615850e-47
Msa0092410	Msa1272610	0.818677	1.729947e-52	-8.615850e-47
Msa0187830	Msa1272610	0.808972	2.381578e-50	-8.615850e-47
Msa0189610	Msa1272610	0.818070	2.374330e-52	-8.615850e-47
Msa0215590	Msa1272610	0.836805	7.546691e-57	-8.615850e-47
Msa0225220	Msa1272610	0.805619	1.223023e-49	-8.615850e-47
Msa0255850	Msa1272610	0.815447	9.203268e-52	-8.615850e-47
Msa0261360	Msa1272610	0.808891	2.478716e-50	-8.615850e-47
Msa0269560	Msa1272610	0.807561	4.759148e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1272610	MtrunA17_Chr8g0337841	87.358	530	17	2	1	480	1	530	0.0	944
Msa1272610	MtrunA17_Chr1g0188571	45.249	221	111	2	265	475	90	310	1.54e-61	204

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1272610	AT3G03560.1	49.423	520	194	6	19	480	5	513	1.56e-166	481
Msa1272610	AT5G23490.2	30.112	538	276	11	44	489	195	724	6.27e-66	226
Msa1272610	AT5G23490.4	29.868	529	271	11	44	480	26	546	1.27e-65	222
Msa1272610	AT5G23490.1	29.868	529	271	11	44	480	195	715	2.59e-64	222
Msa1272610	AT5G08440.2	30.677	502	265	11	54	480	218	711	2.99e-64	222
Msa1272610	AT5G08440.1	30.616	503	265	11	54	480	218	712	4.08e-64	221
Msa1272610	AT5G08440.3	28.571	546	263	13	54	480	218	755	6.71e-57	202
Msa1272610	AT5G23510.1	43.318	217	117	2	276	488	45	259	2.53e-55	186
Msa1272610	AT5G23510.2	45.098	204	106	2	276	475	84	285	3.22e-54	185
Msa1272610	AT5G23510.3	45.098	204	106	2	276	475	45	246	3.49e-54	183

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Find 120 sgRNAs with CRISPR-Local

Find 487 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGCAATCTGTTCACGA+AGG	0.678830	8_3:-6374765	None:intergenic
AAATAAAGAAGAAGAGTCAA+AGG	0.450126	8_3:-6373209	None:intergenic
AACAACCTGTAATTGAATCA+TGG	0.502055	8_3:-6374226	None:intergenic
AACAGCAATCTGTTCACGAA+GGG	0.608091	8_3:-6374764	None:intergenic
AACCATGCTGTTGAAAGTCC+GGG	0.539042	8_3:+6376830	Msa1272610:CDS
AACCATGTTGGAAGGAAGAT+AGG	0.523000	8_3:-6377758	None:intergenic
AACCCGGACTTTCAACAGCA+TGG	0.591961	8_3:-6376832	None:intergenic
AACGATGAGATTCAGGGTCA+AGG	0.586447	8_3:+6374313	Msa1272610:CDS
AACTACATACTCTGGATTCG+TGG	0.536633	8_3:-6378338	None:intergenic
AACTTCTCTTTGTATGTTTC+AGG	0.122947	8_3:+6378050	Msa1272610:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCAGAATTGTGTATTTAGTG+TGG	+	chr8_3:6373583-6373602	Msa1272610:intron	30.0%
CACAACATGTTAAAACTCTT+AGG	-	chr8_3:6373740-6373759	None:intergenic	30.0%
ACAATACACTCAAAATCTCA+GGG	+	chr8_3:6373992-6374011	Msa1272610:intron	30.0%
ATCAACCATGATTCAATTAC+AGG	+	chr8_3:6374221-6374240	Msa1272610:five_prime_UTR	30.0%
AACAACCTGTAATTGAATCA+TGG	-	chr8_3:6374229-6374248	None:intergenic	30.0%
TAGACTCACTTTCAAATCAT+GGG	-	chr8_3:6375123-6375142	None:intergenic	30.0%
TGACGAGTAACTAAAGAAAT+TGG	-	chr8_3:6375199-6375218	None:intergenic	30.0%
TAAACTGATCTATTTCGACA+AGG	+	chr8_3:6375361-6375380	Msa1272610:intron	30.0%
TAAAATAGAAAATAGAGCCG+CGG	+	chr8_3:6375579-6375598	Msa1272610:intron	30.0%
ATCATTAATCTAGATTGCAG+AGG	+	chr8_3:6375758-6375777	Msa1272610:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	6373182	6381649	6373182	ID=Msa1272610;Name=Msa1272610
chr8_3	mRNA	6373182	6381649	6373182	ID=Msa1272610-mRNA-1;Parent=Msa1272610;Name=Msa1272610-mRNA-1;_AED=0.21;_eAED=0.21;_QI=341\|0.88\|0.88\|1\|0.88\|0.88\|18\|57\|502
chr8_3	exon	6373182	6373368	6373182	ID=Msa1272610-mRNA-1:exon:2291;Parent=Msa1272610-mRNA-1
chr8_3	exon	6374123	6374353	6374123	ID=Msa1272610-mRNA-1:exon:2292;Parent=Msa1272610-mRNA-1
chr8_3	exon	6374488	6374569	6374488	ID=Msa1272610-mRNA-1:exon:2293;Parent=Msa1272610-mRNA-1
chr8_3	exon	6374721	6374798	6374721	ID=Msa1272610-mRNA-1:exon:2294;Parent=Msa1272610-mRNA-1
chr8_3	exon	6374877	6374936	6374877	ID=Msa1272610-mRNA-1:exon:2295;Parent=Msa1272610-mRNA-1
chr8_3	exon	6375771	6375881	6375771	ID=Msa1272610-mRNA-1:exon:2296;Parent=Msa1272610-mRNA-1
chr8_3	exon	6376342	6376383	6376342	ID=Msa1272610-mRNA-1:exon:2297;Parent=Msa1272610-mRNA-1
chr8_3	exon	6376779	6376892	6376779	ID=Msa1272610-mRNA-1:exon:2298;Parent=Msa1272610-mRNA-1
chr8_3	exon	6377006	6377107	6377006	ID=Msa1272610-mRNA-1:exon:2299;Parent=Msa1272610-mRNA-1
chr8_3	exon	6377744	6377897	6377744	ID=Msa1272610-mRNA-1:exon:2300;Parent=Msa1272610-mRNA-1
chr8_3	exon	6377965	6378071	6377965	ID=Msa1272610-mRNA-1:exon:2301;Parent=Msa1272610-mRNA-1
chr8_3	exon	6378166	6378208	6378166	ID=Msa1272610-mRNA-1:exon:2302;Parent=Msa1272610-mRNA-1
chr8_3	exon	6378335	6378426	6378335	ID=Msa1272610-mRNA-1:exon:2303;Parent=Msa1272610-mRNA-1
chr8_3	exon	6379154	6379202	6379154	ID=Msa1272610-mRNA-1:exon:2304;Parent=Msa1272610-mRNA-1
chr8_3	exon	6379584	6379654	6379584	ID=Msa1272610-mRNA-1:exon:2305;Parent=Msa1272610-mRNA-1
chr8_3	exon	6380526	6380645	6380526	ID=Msa1272610-mRNA-1:exon:2306;Parent=Msa1272610-mRNA-1
chr8_3	exon	6380885	6380970	6380885	ID=Msa1272610-mRNA-1:exon:2307;Parent=Msa1272610-mRNA-1
chr8_3	exon	6381472	6381649	6381472	ID=Msa1272610-mRNA-1:exon:2308;Parent=Msa1272610-mRNA-1
chr8_3	five_prime_UTR	6373182	6373368	6373182	ID=Msa1272610-mRNA-1:five_prime_utr;Parent=Msa1272610-mRNA-1
chr8_3	five_prime_UTR	6374123	6374276	6374123	ID=Msa1272610-mRNA-1:five_prime_utr;Parent=Msa1272610-mRNA-1
chr8_3	CDS	6374277	6374353	6374277	ID=Msa1272610-mRNA-1:cds;Parent=Msa1272610-mRNA-1
chr8_3	CDS	6374488	6374569	6374488	ID=Msa1272610-mRNA-1:cds;Parent=Msa1272610-mRNA-1
chr8_3	CDS	6374721	6374798	6374721	ID=Msa1272610-mRNA-1:cds;Parent=Msa1272610-mRNA-1
chr8_3	CDS	6374877	6374936	6374877	ID=Msa1272610-mRNA-1:cds;Parent=Msa1272610-mRNA-1
chr8_3	CDS	6375771	6375881	6375771	ID=Msa1272610-mRNA-1:cds;Parent=Msa1272610-mRNA-1
chr8_3	CDS	6376342	6376383	6376342	ID=Msa1272610-mRNA-1:cds;Parent=Msa1272610-mRNA-1
chr8_3	CDS	6376779	6376892	6376779	ID=Msa1272610-mRNA-1:cds;Parent=Msa1272610-mRNA-1
chr8_3	CDS	6377006	6377107	6377006	ID=Msa1272610-mRNA-1:cds;Parent=Msa1272610-mRNA-1
chr8_3	CDS	6377744	6377897	6377744	ID=Msa1272610-mRNA-1:cds;Parent=Msa1272610-mRNA-1
chr8_3	CDS	6377965	6378071	6377965	ID=Msa1272610-mRNA-1:cds;Parent=Msa1272610-mRNA-1
chr8_3	CDS	6378166	6378208	6378166	ID=Msa1272610-mRNA-1:cds;Parent=Msa1272610-mRNA-1
chr8_3	CDS	6378335	6378426	6378335	ID=Msa1272610-mRNA-1:cds;Parent=Msa1272610-mRNA-1
chr8_3	CDS	6379154	6379202	6379154	ID=Msa1272610-mRNA-1:cds;Parent=Msa1272610-mRNA-1
chr8_3	CDS	6379584	6379654	6379584	ID=Msa1272610-mRNA-1:cds;Parent=Msa1272610-mRNA-1
chr8_3	CDS	6380526	6380645	6380526	ID=Msa1272610-mRNA-1:cds;Parent=Msa1272610-mRNA-1
chr8_3	CDS	6380885	6380970	6380885	ID=Msa1272610-mRNA-1:cds;Parent=Msa1272610-mRNA-1
chr8_3	CDS	6381472	6381592	6381472	ID=Msa1272610-mRNA-1:cds;Parent=Msa1272610-mRNA-1
chr8_3	three_prime_UTR	6381593	6381649	6381593	ID=Msa1272610-mRNA-1:three_prime_utr;Parent=Msa1272610-mRNA-1

Gene Sequence

>Msa1272610

ATGTCTTCTGTTAAAAGCCCTTCGCGCGGGCTTAACAACGATGAGATTCAGGGTCAAGGCTCAGAATTTCTAGGCAGGCACAATCTTGAAAAACAACTGGCTCAAAGCAATTTCAAAAGCAATGATGCACTTAATCACGCTCAGGACCTAGACACTATGGAACTTTTTTCACGAGCAAGGGGGCAAGAAGAGGAGATCCTCTCCCTTCGTGAACAGATTGCTGTTTCTTGTATGAAGGAGTTGCAGCTAGTGAATGAGAAATGCAAACTAGAGAGGGAATTTTCGGAATTAAGAATGATTGCAGAGGACGAGCGATATATCTTCATGTCATCTATGCTAGGATTGCTGGCAGAATATGGTTTGTGGCCTCGCGTTATGAATGCCTCTTCAGTATCCAACTATGTAAAGCATTTACATGATCAAATACAATGGAGGATTCGAAATTCACATGATAGAATTGGAGAGTTAACTTCTGGGCAAGAAATTCATGCAGATAATGGTAACCATGCTGTTGAAAGTCCGGGTTCCGCAAATCCGACAAATCACATTCATAATGATTTCATGTTTCAGCATAACATTCCCCAGCAAAATCTTATTGGCAATGAACAAAATCACCAACCAATGAGCAATATGACAGGATATATGAACCCAGGTGTTAGTGGTGATAACTTGCGCAGAGACCTATCTTCCTTCCAACATGGTTTAATTGATCAAATTGGCATGCAAGAGAGAACTGGTGAAAGACAATTTTTAAATGGCAATATCAACTTGTATCAACCTTCACATGAGCATGACGAGACTGCTTCCTCTGTTTCTGAGGATGGCCCTGGCATTGAGAATTTTCAAATCTGCGGTGATGCTATTCCTGGAGAAAAACTTCTTGGATGTGGATATCCAGTCCGTCGAACTTCTCTTTGTATGTTTCAGTGGGTTCGGCATCTTCAGGATGGCACTAGGCAGTACATTGAAGGAGCCACGAATCCAGAGTATGTAGTTACAGCCGATGATGTCGATAAACTGATAGCAGTTGAGTGTATTCCAATGGACGATAAAGGCCGTCAGGGGGAGCTAGTGAGGCTTTTTGCTAATGACCAGCACAAAATAAAATGTGACCCAGAAATGCAGCATGAGATTGACACATATTTGTCTAAAGGAGAAGCAATCTTCAGTGTTCAACTTCTGATGGATTCTTCTGAAAATTGGGAACAAGCAACTCTATTCTTAAGACGATCAGGATACCAAATTAAGATAAGTGGTACTGAAGCTGCGGTAGTTTCTGAGAAATTCTCAAAGGACTTATCGATTAAAGTTCCATGTGGTCTCTCGTCACAATTTGTGCTAACATGCTCGGATGGATCTTCTCATCCTCTAAGCACAGTGAACGCCCGAACGCGAGACACACTTGTGTTAACCATGCGACTCTTCCAGAGTAAGGTAATTCTATCTTTTGCCAACAATTACTTGTATATCAGTGACAATGGCAAAATAATTGTAATCCTAATATTGTAG

Protein sequence

>Msa1272610

MSSVKSPSRGLNNDEIQGQGSEFLGRHNLEKQLAQSNFKSNDALNHAQDLDTMELFSRARGQEEEILSLREQIAVSCMKELQLVNEKCKLEREFSELRMIAEDERYIFMSSMLGLLAEYGLWPRVMNASSVSNYVKHLHDQIQWRIRNSHDRIGELTSGQEIHADNGNHAVESPGSANPTNHIHNDFMFQHNIPQQNLIGNEQNHQPMSNMTGYMNPGVSGDNLRRDLSSFQHGLIDQIGMQERTGERQFLNGNINLYQPSHEHDETASSVSEDGPGIENFQICGDAIPGEKLLGCGYPVRRTSLCMFQWVRHLQDGTRQYIEGATNPEYVVTADDVDKLIAVECIPMDDKGRQGELVRLFANDQHKIKCDPEMQHEIDTYLSKGEAIFSVQLLMDSSENWEQATLFLRRSGYQIKISGTEAAVVSEKFSKDLSIKVPCGLSSQFVLTCSDGSSHPLSTVNARTRDTLVLTMRLFQSKVILSFANNYLYISDNGKIIVILIL*