Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353590 | XP_003591796.2 | 93.923 | 181 | 11 | 0 | 1 | 181 | 1 | 181 | 3.11e-89 | 269 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353590 | sp|P93829|PRA1D_ARATH | 40.462 | 173 | 100 | 2 | 4 | 176 | 2 | 171 | 2.96e-39 | 135 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353590 | G7I466 | 93.923 | 181 | 11 | 0 | 1 | 181 | 1 | 181 | 1.49e-89 | 269 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1353590 | Msa1387100 | -0.801618 | 8.270984e-49 | -8.615850e-47 |
| Msa1353590 | Msa1420630 | -0.805512 | 1.287939e-49 | -8.615850e-47 |
| Msa1353590 | Msa1425570 | -0.805847 | 1.095368e-49 | -8.615850e-47 |
| Msa1353590 | Msa1439000 | -0.800565 | 1.358148e-48 | -8.615850e-47 |
| Msa0619390 | Msa1353590 | -0.809935 | 1.479261e-50 | -8.615850e-47 |
| Msa0619450 | Msa1353590 | -0.825001 | 5.946607e-54 | -8.615850e-47 |
| Msa0619530 | Msa1353590 | -0.824578 | 7.482585e-54 | -8.615850e-47 |
| Msa0659580 | Msa1353590 | -0.827019 | 1.971514e-54 | -8.615850e-47 |
| Msa0662230 | Msa1353590 | -0.808228 | 3.434234e-50 | -8.615850e-47 |
| Msa0667710 | Msa1353590 | -0.810914 | 9.094842e-51 | -8.615850e-47 |
| Msa0667840 | Msa1353590 | -0.804526 | 2.071266e-49 | -8.615850e-47 |
| Msa0681100 | Msa1353590 | -0.835761 | 1.389939e-56 | -8.615850e-47 |
| Msa0714230 | Msa1353590 | -0.824526 | 7.696078e-54 | -8.615850e-47 |
| Msa0748470 | Msa1353590 | -0.811745 | 6.002325e-51 | -8.615850e-47 |
| Msa0128840 | Msa1353590 | -0.803274 | 3.769457e-49 | -8.615850e-47 |
| Msa0164580 | Msa1353590 | -0.813905 | 2.019691e-51 | -8.615850e-47 |
| Msa0170550 | Msa1353590 | -0.807637 | 4.585076e-50 | -8.615850e-47 |
| Msa0186380 | Msa1353590 | -0.802206 | 6.262228e-49 | -8.615850e-47 |
| Msa1296270 | Msa1353590 | -0.823710 | 1.196269e-53 | -8.615850e-47 |
| Msa1330910 | Msa1353590 | -0.818367 | 2.033657e-52 | -8.615850e-47 |
| Msa0385870 | Msa1353590 | -0.814532 | 1.468319e-51 | -8.615850e-47 |
| Msa0404880 | Msa1353590 | -0.817206 | 3.719013e-52 | -8.615850e-47 |
| Msa0408490 | Msa1353590 | -0.835666 | 1.468893e-56 | -8.615850e-47 |
| Msa0469770 | Msa1353590 | -0.812930 | 3.308539e-51 | -8.615850e-47 |
| Msa0469840 | Msa1353590 | -0.805597 | 1.236458e-49 | -8.615850e-47 |
| Msa0476140 | Msa1353590 | -0.806441 | 8.212362e-50 | -8.615850e-47 |
| Msa1057340 | Msa1353590 | -0.802750 | 4.837189e-49 | -8.615850e-47 |
| Msa1176830 | Msa1353590 | -0.809172 | 2.157637e-50 | -8.615850e-47 |
| Msa1182960 | Msa1353590 | -0.801069 | 1.071409e-48 | -8.615850e-47 |
| Msa1202220 | Msa1353590 | -0.814413 | 1.560576e-51 | -8.615850e-47 |
| Msa1203860 | Msa1353590 | -0.811035 | 8.562642e-51 | -8.615850e-47 |
| Msa0501540 | Msa1353590 | -0.809313 | 2.012369e-50 | -8.615850e-47 |
| Msa0512930 | Msa1353590 | -0.816243 | 6.114160e-52 | -8.615850e-47 |
| Msa0532910 | Msa1353590 | -0.804952 | 1.687546e-49 | -8.615850e-47 |
| Msa0546020 | Msa1353590 | -0.814721 | 1.333978e-51 | -8.615850e-47 |
| Msa0550840 | Msa1353590 | -0.814415 | 1.558460e-51 | -8.615850e-47 |
| Msa0584250 | Msa1353590 | -0.809780 | 1.597309e-50 | -8.615850e-47 |
| Msa0598470 | Msa1353590 | -0.811779 | 5.902149e-51 | -8.615850e-47 |
| Msa0880200 | Msa1353590 | -0.805719 | 1.165450e-49 | -8.615850e-47 |
| Msa0927830 | Msa1353590 | -0.811057 | 8.469013e-51 | -8.615850e-47 |
| Msa0930150 | Msa1353590 | -0.815405 | 9.401074e-52 | -8.615850e-47 |
| Msa0940400 | Msa1353590 | -0.802469 | 5.527410e-49 | -8.615850e-47 |
| Msa0974410 | Msa1353590 | -0.808401 | 3.154406e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353590 | MtrunA17_Chr1g0187861 | 93.923 | 181 | 11 | 0 | 1 | 181 | 1 | 181 | 2.86e-93 | 269 |
| Msa1353590 | MtrunA17_Chr7g0260751 | 42.038 | 157 | 88 | 2 | 20 | 176 | 36 | 189 | 9.95e-36 | 123 |
| Msa1353590 | MtrunA17_Chr1g0184741 | 45.695 | 151 | 79 | 2 | 21 | 171 | 30 | 177 | 1.07e-29 | 107 |
| Msa1353590 | MtrunA17_Chr5g0437751 | 38.462 | 156 | 95 | 1 | 8 | 163 | 37 | 191 | 2.55e-26 | 99.8 |
| Msa1353590 | MtrunA17_Chr2g0330441 | 32.298 | 161 | 105 | 3 | 1 | 161 | 15 | 171 | 7.06e-25 | 95.5 |
| Msa1353590 | MtrunA17_Chr4g0005191 | 34.395 | 157 | 102 | 1 | 8 | 164 | 45 | 200 | 8.71e-25 | 96.3 |
| Msa1353590 | MtrunA17_Chr6g0488551 | 32.450 | 151 | 95 | 4 | 5 | 155 | 23 | 166 | 4.96e-20 | 83.2 |
| Msa1353590 | MtrunA17_Chr1g0190601 | 46.154 | 91 | 46 | 2 | 25 | 115 | 37 | 124 | 2.50e-19 | 81.3 |
| Msa1353590 | MtrunA17_Chr8g0341921 | 34.667 | 150 | 95 | 2 | 6 | 155 | 18 | 164 | 8.70e-18 | 76.6 |
| Msa1353590 | MtrunA17_Chr2g0330451 | 33.529 | 170 | 106 | 3 | 2 | 167 | 15 | 181 | 9.53e-17 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353590 | AT1G04260.1 | 40.462 | 173 | 100 | 2 | 4 | 176 | 2 | 171 | 3.01e-40 | 135 |
| Msa1353590 | AT2G38360.1 | 35.897 | 156 | 99 | 1 | 8 | 163 | 40 | 194 | 2.15e-27 | 103 |
| Msa1353590 | AT1G55190.1 | 37.179 | 156 | 95 | 2 | 6 | 161 | 20 | 172 | 4.16e-27 | 101 |
| Msa1353590 | AT1G08770.1 | 32.759 | 174 | 112 | 2 | 12 | 181 | 37 | 209 | 2.97e-26 | 99.8 |
| Msa1353590 | AT3G56110.3 | 39.310 | 145 | 87 | 1 | 19 | 163 | 41 | 184 | 1.46e-23 | 92.8 |
| Msa1353590 | AT3G56110.1 | 39.310 | 145 | 87 | 1 | 19 | 163 | 41 | 184 | 1.46e-23 | 92.8 |
| Msa1353590 | AT3G56110.2 | 39.310 | 145 | 87 | 1 | 19 | 163 | 41 | 184 | 1.46e-23 | 92.8 |
| Msa1353590 | AT3G56110.4 | 39.310 | 145 | 87 | 1 | 19 | 163 | 41 | 184 | 1.46e-23 | 92.8 |
| Msa1353590 | AT5G01640.1 | 35.099 | 151 | 97 | 1 | 13 | 163 | 45 | 194 | 1.86e-22 | 90.5 |
| Msa1353590 | AT2G40380.1 | 36.424 | 151 | 95 | 1 | 21 | 171 | 45 | 194 | 2.82e-22 | 89.7 |
| Msa1353590 | AT1G17700.1 | 34.810 | 158 | 99 | 3 | 12 | 168 | 26 | 180 | 2.21e-21 | 86.7 |
| Msa1353590 | AT5G05380.1 | 37.821 | 156 | 96 | 1 | 8 | 163 | 33 | 187 | 2.54e-21 | 87.4 |
| Msa1353590 | AT5G05380.3 | 37.821 | 156 | 96 | 1 | 8 | 163 | 84 | 238 | 5.78e-21 | 87.4 |
| Msa1353590 | AT5G05380.4 | 37.821 | 156 | 96 | 1 | 8 | 163 | 76 | 230 | 6.06e-21 | 87.0 |
| Msa1353590 | AT5G05380.2 | 37.821 | 156 | 96 | 1 | 8 | 163 | 100 | 254 | 9.54e-21 | 87.0 |
| Msa1353590 | AT3G13710.1 | 30.857 | 175 | 104 | 5 | 6 | 176 | 20 | 181 | 9.97e-21 | 85.1 |
| Msa1353590 | AT3G13720.1 | 31.579 | 171 | 108 | 3 | 6 | 176 | 20 | 181 | 2.35e-20 | 84.0 |
| Msa1353590 | AT5G07110.1 | 33.099 | 142 | 94 | 1 | 23 | 164 | 45 | 185 | 2.41e-14 | 68.6 |
| Msa1353590 | AT4G29658.2 | 33.333 | 153 | 99 | 3 | 2 | 154 | 14 | 163 | 2.12e-13 | 65.9 |
| Msa1353590 | AT1G55640.1 | 30.935 | 139 | 93 | 2 | 17 | 155 | 33 | 168 | 2.67e-13 | 65.5 |
Find 56 sgRNAs with CRISPR-Local
Find 62 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATGTGGTGGTGTCGGTTT+TGG | 0.241307 | tig0013832:-4290 | Msa1353590:CDS |
| AAGTGCGGCTTCTTTGAAAT+TGG | 0.320337 | tig0013832:+4660 | Msa1353590:intergenic |
| TCCAATGCGCGTGGTGGCTT+CGG | 0.332193 | tig0013832:+4564 | Msa1353590:intergenic |
| ATGGAAAGGAGAGAGATGAT+AGG | 0.345503 | tig0013832:+4596 | Msa1353590:intergenic |
| TCCTCTCCACGCGCCACCCT+TGG | 0.363758 | tig0013832:-4633 | Msa1353590:CDS |
| CTCCTCCTTGTCGCTTTCGC+TGG | 0.377058 | tig0013832:-4451 | Msa1353590:CDS |
| GAGGACGGATGTTGGTGGTT+TGG | 0.395824 | tig0013832:-4230 | Msa1353590:CDS |
| TCCTTGTCGCTTTCGCTGGT+TGG | 0.409335 | tig0013832:-4447 | Msa1353590:CDS |
| TGGAAAGGAGAGAGATGATA+GGG | 0.418104 | tig0013832:+4597 | Msa1353590:intergenic |
| AGATGATAGGGAGAGGAATT+CGG | 0.432739 | tig0013832:+4609 | Msa1353590:intergenic |
| TAATATCAAACAGGTGCATA+AGG | 0.438615 | tig0013832:+4157 | Msa1353590:intergenic |
| GCGGGGATTGTTTGTTTGCA+TGG | 0.445223 | tig0013832:-4262 | Msa1353590:CDS |
| TCCGAAGCCACCACGCGCAT+TGG | 0.447170 | tig0013832:-4565 | Msa1353590:CDS |
| TCGTGTTGTTGTTGTGGCGC+TGG | 0.481756 | tig0013832:-4356 | Msa1353590:CDS |
| AGATGAAGGTGTAGTTGAAG+AGG | 0.484589 | tig0013832:+4524 | Msa1353590:intergenic |
| CGACACCAATAATATCAAAC+AGG | 0.486498 | tig0013832:+4148 | Msa1353590:intergenic |
| AGGAGAGAGATGATAGGGAG+AGG | 0.492521 | tig0013832:+4602 | Msa1353590:intergenic |
| TCCAAGGGTGGCGCGTGGAG+AGG | 0.505040 | tig0013832:+4632 | Msa1353590:intergenic |
| GTGGCTTCGGAGAGGGAAGA+TGG | 0.507798 | tig0013832:+4577 | Msa1353590:intergenic |
| TGATGATCGTGTTGTTGTTG+TGG | 0.510697 | tig0013832:-4362 | Msa1353590:CDS |
| GGAGAACGATGGCGAGAGGA+TGG | 0.514793 | tig0013832:+4470 | Msa1353590:intergenic |
| GAGTGGTGTGTGGGTGAATG+TGG | 0.517878 | tig0013832:-4305 | Msa1353590:CDS |
| GTGGGTGAATGTGGTGGTGT+CGG | 0.523922 | tig0013832:-4296 | Msa1353590:CDS |
| GCGCGTGGTGGCTTCGGAGA+GGG | 0.524314 | tig0013832:+4570 | Msa1353590:intergenic |
| GATGGTAGACGAGGCTGATG+AGG | 0.526706 | tig0013832:+4488 | Msa1353590:intergenic |
| GAGGATGAAGAGGAAGATGA+AGG | 0.535008 | tig0013832:+4510 | Msa1353590:intergenic |
| GGCTGATGAGGAGGATGAAG+AGG | 0.545059 | tig0013832:+4500 | Msa1353590:intergenic |
| ATGCTAGCTACTGATACTGC+TGG | 0.564776 | tig0013832:-4181 | Msa1353590:CDS |
| GATGATTATGAATCGCCGTA+TGG | 0.570258 | tig0013832:-4208 | Msa1353590:CDS |
| TTCGGAGAGGGAAGATGGAA+AGG | 0.572285 | tig0013832:+4582 | Msa1353590:intergenic |
| AGGGAGAGGAATTCGGTCCA+AGG | 0.574199 | tig0013832:+4616 | Msa1353590:intergenic |
| GTTTGCATGGTGCGTTGAGG+AGG | 0.576839 | tig0013832:-4249 | Msa1353590:CDS |
| GCAGTATCAGTAGCTAGCAT+AGG | 0.582398 | tig0013832:+4184 | Msa1353590:intergenic |
| GCATGGTGCGTTGAGGAGGA+CGG | 0.586209 | tig0013832:-4245 | Msa1353590:CDS |
| ACGACGTTGAACAGCGACAA+AGG | 0.588894 | tig0013832:+4391 | Msa1353590:intergenic |
| GAACAGCGACAAAGGCTCAT+CGG | 0.591879 | tig0013832:+4399 | Msa1353590:intergenic |
| TTGAGGAGGACGGATGTTGG+TGG | 0.594756 | tig0013832:-4235 | Msa1353590:CDS |
| GGGAGAGGAATTCGGTCCAA+GGG | 0.594820 | tig0013832:+4617 | Msa1353590:intergenic |
| AGAGGAATTCGGTCCAAGGG+TGG | 0.596200 | tig0013832:+4620 | Msa1353590:intergenic |
| TGTTGTTGTTGTGGCGCTGG+TGG | 0.598452 | tig0013832:-4353 | Msa1353590:CDS |
| GGTAGACGAGGCTGATGAGG+AGG | 0.602901 | tig0013832:+4491 | Msa1353590:intergenic |
| GCGTTGAGGAGGACGGATGT+TGG | 0.603625 | tig0013832:-4238 | Msa1353590:CDS |
| ACCAACCAGCGAAAGCGACA+AGG | 0.609728 | tig0013832:+4446 | Msa1353590:intergenic |
| TGGTGTGTGGGTGAATGTGG+TGG | 0.613899 | tig0013832:-4302 | Msa1353590:CDS |
| TTTGTCGCTGTTCAACGTCG+TGG | 0.617871 | tig0013832:-4389 | Msa1353590:CDS |
| GTAGCTAGCATAGGACCATA+CGG | 0.624008 | tig0013832:+4193 | Msa1353590:intergenic |
| CGTGGAGAGGATTGAAAGTG+CGG | 0.624477 | tig0013832:+4645 | Msa1353590:intergenic |
| GTCGCTGTTCAACGTCGTGG+CGG | 0.633869 | tig0013832:-4386 | Msa1353590:CDS |
| AGGAGGAGAACGATGGCGAG+AGG | 0.638618 | tig0013832:+4466 | Msa1353590:intergenic |
| TGCGCGTGGTGGCTTCGGAG+AGG | 0.641439 | tig0013832:+4569 | Msa1353590:intergenic |
| AGCGACAAGGAGGAGAACGA+TGG | 0.650682 | tig0013832:+4459 | Msa1353590:intergenic |
| ATTGATTCCAATGCGCGTGG+TGG | 0.675368 | tig0013832:+4558 | Msa1353590:intergenic |
| GAGATTGATTCCAATGCGCG+TGG | 0.679657 | tig0013832:+4555 | Msa1353590:intergenic |
| AACCAGCGAAAGCGACAAGG+AGG | 0.690375 | tig0013832:+4449 | Msa1353590:intergenic |
| TGGCGAGAGGATGGTAGACG+AGG | 0.695341 | tig0013832:+4479 | Msa1353590:intergenic |
| TTTGTTTGCATGGTGCGTTG+AGG | 0.700659 | tig0013832:-4252 | Msa1353590:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTTGTTGTTTTTGTGAG+TGG | - | tig0013832:4525-4544 | Msa1353590:CDS | 30.0% |
| !! | AAGTGCGGCTTCTTTGAAAT+TGG | + | tig0013832:4190-4209 | Msa0988860:intergenic | 40.0% |
| AGATGATAGGGAGAGGAATT+CGG | + | tig0013832:4241-4260 | Msa1353590:intergenic | 40.0% | |
| TGGAAAGGAGAGAGATGATA+GGG | + | tig0013832:4253-4272 | Msa1353590:intergenic | 40.0% | |
| ATGGAAAGGAGAGAGATGAT+AGG | + | tig0013832:4254-4273 | Msa1353590:intergenic | 40.0% | |
| ! | AGATGAAGGTGTAGTTGAAG+AGG | + | tig0013832:4326-4345 | Msa1353590:intergenic | 40.0% |
| ! | TGATGATCGTGTTGTTGTTG+TGG | - | tig0013832:4485-4504 | Msa1353590:CDS | 40.0% |
| !!! | TTGTTTTTGTGAGTGGTGTG+TGG | - | tig0013832:4532-4551 | Msa1353590:CDS | 40.0% |
| !! | TGTTTTTGTGAGTGGTGTGT+GGG | - | tig0013832:4533-4552 | Msa1353590:CDS | 40.0% |
| GATGATTATGAATCGCCGTA+TGG | - | tig0013832:4639-4658 | Msa1353590:CDS | 40.0% | |
| GAGGATGAAGAGGAAGATGA+AGG | + | tig0013832:4340-4359 | Msa1353590:intergenic | 45.0% | |
| TTTGTTTGCATGGTGCGTTG+AGG | - | tig0013832:4595-4614 | Msa1353590:CDS | 45.0% | |
| GTAGCTAGCATAGGACCATA+CGG | + | tig0013832:4657-4676 | Msa1353590:intergenic | 45.0% | |
| GCAGTATCAGTAGCTAGCAT+AGG | + | tig0013832:4666-4685 | Msa1353590:intergenic | 45.0% | |
| ATGCTAGCTACTGATACTGC+TGG | - | tig0013832:4666-4685 | Msa1353590:CDS | 45.0% | |
| CGTGGAGAGGATTGAAAGTG+CGG | + | tig0013832:4205-4224 | Msa0988860:intergenic | 50.0% | |
| AGGAGAGAGATGATAGGGAG+AGG | + | tig0013832:4248-4267 | Msa1353590:intergenic | 50.0% | |
| TTCGGAGAGGGAAGATGGAA+AGG | + | tig0013832:4268-4287 | Msa1353590:intergenic | 50.0% | |
| ! | ATTGATTCCAATGCGCGTGG+TGG | + | tig0013832:4292-4311 | Msa1353590:intergenic | 50.0% |
| ! | GAGATTGATTCCAATGCGCG+TGG | + | tig0013832:4295-4314 | Msa1353590:intergenic | 50.0% |
| GAACAGCGACAAAGGCTCAT+CGG | + | tig0013832:4451-4470 | Msa1353590:intergenic | 50.0% | |
| ACGACGTTGAACAGCGACAA+AGG | + | tig0013832:4459-4478 | Msa1353590:intergenic | 50.0% | |
| TTTGTCGCTGTTCAACGTCG+TGG | - | tig0013832:4458-4477 | Msa1353590:CDS | 50.0% | |
| !!! | GAATGTGGTGGTGTCGGTTT+TGG | - | tig0013832:4557-4576 | Msa1353590:CDS | 50.0% |
| GCGGGGATTGTTTGTTTGCA+TGG | - | tig0013832:4585-4604 | Msa1353590:CDS | 50.0% | |
| AGAGGAATTCGGTCCAAGGG+TGG | + | tig0013832:4230-4249 | Msa1353590:intergenic | 55.0% | |
| GGGAGAGGAATTCGGTCCAA+GGG | + | tig0013832:4233-4252 | Msa1353590:intergenic | 55.0% | |
| AGGGAGAGGAATTCGGTCCA+AGG | + | tig0013832:4234-4253 | Msa1353590:intergenic | 55.0% | |
| GGCTGATGAGGAGGATGAAG+AGG | + | tig0013832:4350-4369 | Msa1353590:intergenic | 55.0% | |
| GATGGTAGACGAGGCTGATG+AGG | + | tig0013832:4362-4381 | Msa1353590:intergenic | 55.0% | |
| AGCGACAAGGAGGAGAACGA+TGG | + | tig0013832:4391-4410 | Msa1353590:intergenic | 55.0% | |
| AACCAGCGAAAGCGACAAGG+AGG | + | tig0013832:4401-4420 | Msa1353590:intergenic | 55.0% | |
| !! | TCCTTGTCGCTTTCGCTGGT+TGG | - | tig0013832:4400-4419 | Msa1353590:CDS | 55.0% |
| ACCAACCAGCGAAAGCGACA+AGG | + | tig0013832:4404-4423 | Msa1353590:intergenic | 55.0% | |
| ! | TCGTGTTGTTGTTGTGGCGC+TGG | - | tig0013832:4491-4510 | Msa1353590:CDS | 55.0% |
| ! | TGTTGTTGTTGTGGCGCTGG+TGG | - | tig0013832:4494-4513 | Msa1353590:CDS | 55.0% |
| GAGTGGTGTGTGGGTGAATG+TGG | - | tig0013832:4542-4561 | Msa1353590:CDS | 55.0% | |
| TGGTGTGTGGGTGAATGTGG+TGG | - | tig0013832:4545-4564 | Msa1353590:CDS | 55.0% | |
| ! | GTGGGTGAATGTGGTGGTGT+CGG | - | tig0013832:4551-4570 | Msa1353590:CDS | 55.0% |
| !!! | GGTGGTGTCGGTTTTGGTTG+CGG | - | tig0013832:4563-4582 | Msa1353590:CDS | 55.0% |
| GTTTGCATGGTGCGTTGAGG+AGG | - | tig0013832:4598-4617 | Msa1353590:CDS | 55.0% | |
| TTGAGGAGGACGGATGTTGG+TGG | - | tig0013832:4612-4631 | Msa1353590:CDS | 55.0% | |
| !! | GAGGACGGATGTTGGTGGTT+TGG | - | tig0013832:4617-4636 | Msa1353590:CDS | 55.0% |
| GTGGCTTCGGAGAGGGAAGA+TGG | + | tig0013832:4273-4292 | Msa1353590:intergenic | 60.0% | |
| TCCAATGCGCGTGGTGGCTT+CGG | + | tig0013832:4286-4305 | Msa1353590:intergenic | 60.0% | |
| GGTAGACGAGGCTGATGAGG+AGG | + | tig0013832:4359-4378 | Msa1353590:intergenic | 60.0% | |
| TGGCGAGAGGATGGTAGACG+AGG | + | tig0013832:4371-4390 | Msa1353590:intergenic | 60.0% | |
| GGAGAACGATGGCGAGAGGA+TGG | + | tig0013832:4380-4399 | Msa1353590:intergenic | 60.0% | |
| AGGAGGAGAACGATGGCGAG+AGG | + | tig0013832:4384-4403 | Msa1353590:intergenic | 60.0% | |
| !! | CTCCTCCTTGTCGCTTTCGC+TGG | - | tig0013832:4396-4415 | Msa1353590:CDS | 60.0% |
| GTCGCTGTTCAACGTCGTGG+CGG | - | tig0013832:4461-4480 | Msa1353590:CDS | 60.0% | |
| !!! | GGTGTCGGTTTTGGTTGCGG+CGG | - | tig0013832:4566-4585 | Msa1353590:CDS | 60.0% |
| !!! | GTGTCGGTTTTGGTTGCGGC+GGG | - | tig0013832:4567-4586 | Msa1353590:CDS | 60.0% |
| !!! | TGTCGGTTTTGGTTGCGGCG+GGG | - | tig0013832:4568-4587 | Msa1353590:CDS | 60.0% |
| GCATGGTGCGTTGAGGAGGA+CGG | - | tig0013832:4602-4621 | Msa1353590:CDS | 60.0% | |
| GCGTTGAGGAGGACGGATGT+TGG | - | tig0013832:4609-4628 | Msa1353590:CDS | 60.0% | |
| TCCGAAGCCACCACGCGCAT+TGG | - | tig0013832:4282-4301 | Msa1353590:CDS | 65.0% | |
| TCCTCTCCACGCGCCACCCT+TGG | - | tig0013832:4214-4233 | Msa1353590:CDS | 70.0% | |
| TCCAAGGGTGGCGCGTGGAG+AGG | + | tig0013832:4218-4237 | Msa1353590:intergenic | 70.0% | |
| TTCGGTCCAAGGGTGGCGCG+TGG | + | tig0013832:4223-4242 | Msa1353590:intergenic | 70.0% | |
| GCGCGTGGTGGCTTCGGAGA+GGG | + | tig0013832:4280-4299 | Msa1353590:intergenic | 70.0% | |
| TGCGCGTGGTGGCTTCGGAG+AGG | + | tig0013832:4281-4300 | Msa1353590:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0013832 | gene | 4162 | 4707 | 4162 | ID=Msa1353590;Name=Msa1353590 |
| tig0013832 | mRNA | 4162 | 4707 | 4162 | ID=Msa1353590-mRNA-1;Parent=Msa1353590;Name=Msa1353590-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|-1|0|1|-1|1|1|0|181 |
| tig0013832 | exon | 4162 | 4707 | 4162 | ID=Msa1353590-mRNA-1:exon:8743;Parent=Msa1353590-mRNA-1 |
| tig0013832 | CDS | 4162 | 4707 | 4162 | ID=Msa1353590-mRNA-1:cds;Parent=Msa1353590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
