AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0170550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0170550 MtrunA17_Chr1g0188121 97.647 340 8 0 1 340 1 340 0.0 692
Msa0170550 MtrunA17_Chr1g0184951 76.945 347 73 2 1 340 1 347 9.82e-177 493
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0170550 AT3G63410.1 76.522 345 69 4 1 340 1 338 0.0 504

Find 130 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTTTGAACATTGTTTATT+TGG 0.134864 1_4:-54684981 Msa0170550:three_prime_UTR
AACACAAGAAAGAAGCATTT+TGG 0.213825 1_4:-54687001 Msa0170550:CDS
AGCTAAGGAGTTGTGGAATA+TGG 0.218960 1_4:+54687555 None:intergenic
AGCATATAAGCCAAGTTTAT+TGG 0.221137 1_4:-54684934 Msa0170550:three_prime_UTR
GTCCTGTATACCCAACATTT+TGG 0.229561 1_4:-54685638 Msa0170550:CDS
TCTTTAAGCCACATGTAAAT+TGG 0.231207 1_4:+54685225 None:intergenic
CGCACACCGCGATACCATTT+TGG 0.239417 1_4:+54685507 None:intergenic
AGAAACACCAATGGATTTAC+AGG 0.256390 1_4:+54685297 None:intergenic
CTGATTTCTGATTTCATGTC+TGG 0.273349 1_4:-54684884 Msa0170550:three_prime_UTR
TTCAGCACCACTAAGCATTA+AGG 0.275776 1_4:+54687205 None:intergenic
GTATATTGAATGGTTTAAAA+AGG 0.282915 1_4:-54685565 Msa0170550:CDS
TTTCTCTCAAGGCTCATTCT+TGG 0.311957 1_4:-54685279 Msa0170550:CDS
TTCTTGTGTTGGATGAATCT+AGG 0.315559 1_4:+54687014 None:intergenic
TCAATATACTCTTCCTCCTT+AGG 0.315806 1_4:+54685579 None:intergenic
GTTAATTTGTTGACATGTTT+TGG 0.318002 1_4:-54685053 Msa0170550:three_prime_UTR
ATGTCAACAAATTAACATTA+TGG 0.319352 1_4:+54685060 None:intergenic
GCCTGCCCTTTGGAACAATT+TGG 0.321260 1_4:+54685202 None:intergenic
GCATATAGAGTTCTGAAAAT+AGG 0.330673 1_4:-54685681 Msa0170550:CDS
TTTGCAACTGAAATGGAAAA+TGG 0.332120 1_4:+54687341 None:intergenic
ATCAGGCGACTCTCCCCTTC+AGG 0.333951 1_4:-54685436 Msa0170550:intron
GGAGGCAAAGCGTGCATTAT+AGG 0.339249 1_4:-54685660 Msa0170550:CDS
TATAAAAGTGTTAATTTCCT+TGG 0.349879 1_4:-54687265 Msa0170550:five_prime_UTR
TGAAAAGAATAGGTCCAAAA+TGG 0.366680 1_4:-54685521 Msa0170550:CDS
TGTTGTTCAGTATTGAATAC+TGG 0.372308 1_4:-54685731 Msa0170550:intron
GATTAAATACGCCTGCCCTT+TGG 0.378600 1_4:+54685192 None:intergenic
TGTTTATTTGGAGGTTAGTC+AGG 0.380528 1_4:-54684969 Msa0170550:three_prime_UTR
TTGGAGAATCAAGTAAAGTT+GGG 0.387660 1_4:-54685164 Msa0170550:three_prime_UTR
ACTGGTGTCAAACCTTTATC+AGG 0.388260 1_4:-54685453 Msa0170550:CDS
AACCAAAATGTTGGGTATAC+AGG 0.392300 1_4:+54685636 None:intergenic
GTGGATGTTGGAGGAGGAAC+TGG 0.396715 1_4:-54686861 Msa0170550:CDS
AGCATAGTTCCATCTGGATT+AGG 0.398282 1_4:-54687164 Msa0170550:CDS
ATTGGAGAATCAAGTAAAGT+TGG 0.403522 1_4:-54685165 Msa0170550:three_prime_UTR
TTTGGAATTTGCAACTGAAA+TGG 0.404023 1_4:+54687334 None:intergenic
TGGTAAGGTACATAATGTTA+TGG 0.407729 1_4:+54687361 None:intergenic
GCGGCGGCACGGCCTCATCA+TGG 0.410184 1_4:-54685487 Msa0170550:CDS
AAAATGCTTCTTTCTTGTGT+TGG 0.410236 1_4:+54687003 None:intergenic
AGGGGAGAGTCGCCTGATAA+AGG 0.412042 1_4:+54685441 None:intergenic
GAATCGTAGTAAAATTTAAG+AGG 0.413419 1_4:+54685018 None:intergenic
GAAATGAGACATGGATGGTT+TGG 0.414913 1_4:+54687316 None:intergenic
CAATATACTCTTCCTCCTTA+GGG 0.416784 1_4:+54685580 None:intergenic
AGAAATAATGCAGTTTCATA+TGG 0.418931 1_4:-54687104 Msa0170550:CDS
TTAATGCCACGCTGTGGATC+AGG 0.419899 1_4:+54685708 None:intergenic
CAGACATGAAATCAGAAATC+AGG 0.420206 1_4:+54684885 None:intergenic
AAAGAATGTAAGATAATTGA+AGG 0.432985 1_4:-54686735 Msa0170550:CDS
ATTAATAGCATAGTTCCATC+TGG 0.434382 1_4:-54687170 Msa0170550:CDS
ATGGCCTCCTTAATGCTTAG+TGG 0.436810 1_4:-54687212 Msa0170550:CDS
AGCCTGCTGATTTGTATAAC+CGG 0.442496 1_4:-54686896 Msa0170550:CDS
GCTAAGGAGTTGTGGAATAT+GGG 0.445649 1_4:+54687556 None:intergenic
CTTTATGTAGCTTGGTCCTA+AGG 0.446738 1_4:-54685337 Msa0170550:intron
TCCGCATAATCAGTTGGAAA+TGG 0.449194 1_4:+54686696 None:intergenic
ATCATGGGTTGTTCTGTCAC+TGG 0.452148 1_4:-54685471 Msa0170550:CDS
GATGTCAAGCTGAAAAGAAT+AGG 0.453690 1_4:-54685531 Msa0170550:CDS
ATTATGGAAGGCAAAGTTCA+TGG 0.458064 1_4:+54685076 None:intergenic
CGGCGGCACGGCCTCATCAT+GGG 0.458451 1_4:-54685486 Msa0170550:CDS
GCGGACCGATATGTTTCTGC+TGG 0.461499 1_4:-54686678 Msa0170550:CDS
TTTGAACATTGTTTATTTGG+AGG 0.466055 1_4:-54684978 Msa0170550:three_prime_UTR
CATCCACAACTCGCATTCTC+CGG 0.479656 1_4:+54686877 None:intergenic
ACCAAATTGTTCCAAAGGGC+AGG 0.486418 1_4:-54685203 Msa0170550:CDS
TATCGCGGTGTGCGGCGGCA+CGG 0.488724 1_4:-54685498 Msa0170550:CDS
ACATGAAAAGCATAGTGTAT+TGG 0.488827 1_4:+54687496 None:intergenic
AGGCGTATTTAATCGAAGAT+TGG 0.490077 1_4:-54685183 Msa0170550:exon
ATGTCTTCAGTCCAGTGACC+TGG 0.491830 1_4:+54686936 None:intergenic
AATTGAGACAACCAAAATGT+TGG 0.493584 1_4:+54685627 None:intergenic
ATTGAGACAACCAAAATGTT+GGG 0.494828 1_4:+54685628 None:intergenic
TTCTGTACATCCTCTACCTT+AGG 0.496880 1_4:+54685321 None:intergenic
AAACTTGGCTTATATGCTGC+AGG 0.498720 1_4:+54684939 None:intergenic
GGAACTGGATTCACTACTCT+TGG 0.502345 1_4:-54686846 Msa0170550:CDS
ATATAATAAATCCAGGTCAC+TGG 0.503119 1_4:-54686947 Msa0170550:CDS
ATAAGCCAAGTTTATTGGAT+AGG 0.503163 1_4:-54684929 Msa0170550:three_prime_UTR
GTCTCCTCATCAGCTGGCTA+AGG 0.507432 1_4:-54686778 Msa0170550:CDS
ACCTTCCAGCAGAAACATAT+CGG 0.509798 1_4:+54686673 None:intergenic
ATCCATTGGTGTTTCTCTCA+AGG 0.513270 1_4:-54685290 Msa0170550:CDS
CTCAATTCTTTGCAGACATG+TGG 0.515450 1_4:-54685611 Msa0170550:CDS
AGCAATACCTCAGTGGTGAA+TGG 0.518290 1_4:-54687470 Msa0170550:five_prime_UTR
TGATCAGTCTCCTCATCAGC+TGG 0.520456 1_4:-54686784 Msa0170550:CDS
TACATGTGAGTGGTGCTGAT+TGG 0.522534 1_4:+54687424 None:intergenic
TCTGATGATTGATGTTCTCA+AGG 0.524510 1_4:-54685121 Msa0170550:three_prime_UTR
TAAAGACCAAATTGTTCCAA+AGG 0.528009 1_4:-54685208 Msa0170550:CDS
AACTGAAATGGAAAATGGTA+AGG 0.530261 1_4:+54687346 None:intergenic
GCTGGCTAAGGCTAAGAAGA+AGG 0.533762 1_4:-54686766 Msa0170550:CDS
CTCCGGTTATACAAATCAGC+AGG 0.541791 1_4:+54686894 None:intergenic
TATGATCATATAATAAATCC+AGG 0.542176 1_4:-54686954 Msa0170550:CDS
AAAGACCAAATTGTTCCAAA+GGG 0.542862 1_4:-54685207 Msa0170550:CDS
ACCGATATGTTTCTGCTGGA+AGG 0.544245 1_4:-54686674 Msa0170550:intron
TCCATTTCCAACTGATTATG+CGG 0.544265 1_4:-54686697 Msa0170550:CDS
CATGTGGATGCTCTTCCCTA+AGG 0.545532 1_4:-54685595 Msa0170550:CDS
AAAATTTGTGAAGATATGTC+TGG 0.548237 1_4:-54687584 Msa0170550:five_prime_UTR
CACCACTCACATGTATTATG+TGG 0.551164 1_4:-54687416 Msa0170550:five_prime_UTR
ATGCGAGTTGTGGATGTTGG+AGG 0.558982 1_4:-54686870 Msa0170550:CDS
TGGAACTAGTACATAGTAAG+TGG 0.561824 1_4:+54685245 None:intergenic
GTAGCTTGGTCCTAAGGTAG+AGG 0.563615 1_4:-54685331 Msa0170550:intron
ACTAAGCATTAAGGAGGCCA+TGG 0.563703 1_4:+54687214 None:intergenic
AGGAGGAAGAGTATATTGAA+TGG 0.563879 1_4:-54685575 Msa0170550:CDS
GATGCAGCGTCTCATCCGCA+AGG 0.564190 1_4:-54687049 Msa0170550:CDS
ATGAATCTAGGCTGAGAAGA+AGG 0.567539 1_4:+54687026 None:intergenic
TACTAGTTCCAATTTACATG+TGG 0.569755 1_4:-54685233 Msa0170550:CDS
CAACAAATTAACATTATGGA+AGG 0.575099 1_4:+54685064 None:intergenic
GAGGCACAGCTAAGGAGTTG+TGG 0.577245 1_4:+54687548 None:intergenic
AGAATGCGAGTTGTGGATGT+TGG 0.578151 1_4:-54686873 Msa0170550:CDS
ACAGAAGCCTGTAAATCCAT+TGG 0.579520 1_4:-54685304 Msa0170550:CDS
CTCACAGAACCTAATCCAGA+TGG 0.579852 1_4:+54687155 None:intergenic
TTAGCCTTAGCCAGCTGATG+AGG 0.582379 1_4:+54686774 None:intergenic
TGTATTCTATAGTACCTGAA+GGG 0.582741 1_4:+54685422 None:intergenic
TTAATACTAAGATTCTTCCA+AGG 0.583577 1_4:+54687248 None:intergenic
CAAAATGGTATCGCGGTGTG+CGG 0.584931 1_4:-54685506 Msa0170550:CDS
TGGAGAATCAAGTAAAGTTG+GGG 0.588040 1_4:-54685163 Msa0170550:three_prime_UTR
AATGGTATCGCGGTGTGCGG+CGG 0.590801 1_4:-54685503 Msa0170550:CDS
GAATCAAGTAAAGTTGGGGT+AGG 0.591713 1_4:-54685159 Msa0170550:three_prime_UTR
TATAGAGTTCTGAAAATAGG+AGG 0.592372 1_4:-54685678 Msa0170550:CDS
TATGCTGCAATATAACTAAG+TGG 0.595980 1_4:+54687386 None:intergenic
TATCGGTCCGCATAATCAGT+TGG 0.596748 1_4:+54686690 None:intergenic
TATTAAGTTCTACAACTCCA+TGG 0.596798 1_4:-54687231 Msa0170550:exon
AATACAGTCGTATTTAGATG+TGG 0.605074 1_4:+54684779 None:intergenic
TGTGGTCAAACATTGACTCA+TGG 0.611013 1_4:+54684797 None:intergenic
CGAGTTGTGGATGTTGGAGG+AGG 0.623443 1_4:-54686867 Msa0170550:CDS
AGCACCACTAAGCATTAAGG+AGG 0.625927 1_4:+54687208 None:intergenic
TAACCGGAGAATGCGAGTTG+TGG 0.630299 1_4:-54686880 Msa0170550:CDS
TGACAGAACAACCCATGATG+AGG 0.635531 1_4:+54685475 None:intergenic
GTGGATGCTCTTCCCTAAGG+AGG 0.637523 1_4:-54685592 Msa0170550:CDS
TCATAGAAATGAGACATGGA+TGG 0.640099 1_4:+54687311 None:intergenic
GCTTCTTTAATGCCACGCTG+TGG 0.647758 1_4:+54685702 None:intergenic
AGCCTTGAGAGAAACACCAA+TGG 0.656851 1_4:+54685288 None:intergenic
GTATTCTATAGTACCTGAAG+GGG 0.660431 1_4:+54685423 None:intergenic
AGGCTGAGAAGAAGGCCTTG+CGG 0.675664 1_4:+54687034 None:intergenic
ATAGGTCCAAAATGGTATCG+CGG 0.700687 1_4:-54685513 Msa0170550:CDS
ATGTGATAGCAATACCTCAG+TGG 0.708177 1_4:-54687477 Msa0170550:five_prime_UTR
TATATCATAGAAATGAGACA+TGG 0.715108 1_4:+54687307 None:intergenic
TGTTGTTCCATTCACCACTG+AGG 0.726264 1_4:+54687463 None:intergenic
TACTGGCCTGATCCACAGCG+TGG 0.734098 1_4:-54685714 Msa0170550:CDS
CACCACATAATACATGTGAG+TGG 0.746020 1_4:+54687414 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTGGATTTTTCTATTTTT+TGG + chr1_4:54684776-54684795 None:intergenic 15.0%
!!! TTATTTTAAGTTAAAAGACT+AGG - chr1_4:54685721-54685740 Msa0170550:CDS 15.0%
!!! ATCTTTTTGTTTTACTTAAT+AGG - chr1_4:54685871-54685890 Msa0170550:intron 15.0%
!! TTATAAAATGTCATTCAAAA+TGG - chr1_4:54685971-54685990 Msa0170550:intron 15.0%
!! AATATTTAAAGAACTTTAGA+AGG + chr1_4:54686890-54686909 None:intergenic 15.0%
!!! GATTTACTTTTCAAAATTAA+TGG - chr1_4:54687187-54687206 Msa0170550:CDS 15.0%
!!! TTTTTGGTACATTTTATTAG+AGG + chr1_4:54684760-54684779 None:intergenic 20.0%
!!! TATAAAAGTGTTAATTTCCT+TGG - chr1_4:54685021-54685040 Msa0170550:three_prime_UTR 20.0%
!! TATGATCATATAATAAATCC+AGG - chr1_4:54685332-54685351 Msa0170550:intron 20.0%
!! AAAGAATGTAAGATAATTGA+AGG - chr1_4:54685551-54685570 Msa0170550:CDS 20.0%
!!! ATATTTTGTAAAGCTCAAAT+GGG + chr1_4:54685816-54685835 None:intergenic 20.0%
!!! AATATTTTGTAAAGCTCAAA+TGG + chr1_4:54685817-54685836 None:intergenic 20.0%
!!! AAATGAAAAGACATCTTTTA+TGG - chr1_4:54685841-54685860 Msa0170550:intron 20.0%
!!! GTTTTACTTAATAGGAAAAT+TGG - chr1_4:54685879-54685898 Msa0170550:intron 20.0%
!!! CTAATTTGTCTATGAAATTT+AGG - chr1_4:54686106-54686125 Msa0170550:intron 20.0%
!! AAATGAGTAAATAGACAAAT+TGG + chr1_4:54686403-54686422 None:intergenic 20.0%
!! TTATGTTACATTGATACATA+AGG + chr1_4:54686528-54686547 None:intergenic 20.0%
!! GTATATTGAATGGTTTAAAA+AGG - chr1_4:54686721-54686740 Msa0170550:CDS 20.0%
!! ATGTCAACAAATTAACATTA+TGG + chr1_4:54687229-54687248 None:intergenic 20.0%
!! TACTTTGAACATTGTTTATT+TGG - chr1_4:54687305-54687324 Msa0170550:five_prime_UTR 20.0%
! AAAATTTGTGAAGATATGTC+TGG - chr1_4:54684702-54684721 Msa0170550:three_prime_UTR 25.0%
! TATATCATAGAAATGAGACA+TGG + chr1_4:54684982-54685001 None:intergenic 25.0%
! TTAATACTAAGATTCTTCCA+AGG + chr1_4:54685041-54685060 None:intergenic 25.0%
! AGAAATAATGCAGTTTCATA+TGG - chr1_4:54685182-54685201 Msa0170550:exon 25.0%
! TGTATATACTGCAAGATTTA+TGG - chr1_4:54685683-54685702 Msa0170550:CDS 25.0%
!! CAATTTTGAATGACATATCA+TGG + chr1_4:54686036-54686055 None:intergenic 25.0%
! CATGATATGTCATTCAAAAT+TGG - chr1_4:54686034-54686053 Msa0170550:intron 25.0%
! AGGTCAACTAAAGAAAAAAA+TGG - chr1_4:54686126-54686145 Msa0170550:intron 25.0%
!! TCTATTTACTCATTTTCTAG+AGG - chr1_4:54686408-54686427 Msa0170550:intron 25.0%
! CAACAAATTAACATTATGGA+AGG + chr1_4:54687225-54687244 None:intergenic 25.0%
!!! GTTAATTTGTTGACATGTTT+TGG - chr1_4:54687233-54687252 Msa0170550:exon 25.0%
! GAATCGTAGTAAAATTTAAG+AGG + chr1_4:54687271-54687290 None:intergenic 25.0%
!!! ATTTTACTACGATTCTGAAA+TGG - chr1_4:54687276-54687295 Msa0170550:five_prime_UTR 25.0%
! TTTGAACATTGTTTATTTGG+AGG - chr1_4:54687308-54687327 Msa0170550:five_prime_UTR 25.0%
!! TTTTACCTATCCAATAAACT+TGG + chr1_4:54687365-54687384 None:intergenic 25.0%
! ACATGAAAAGCATAGTGTAT+TGG + chr1_4:54684793-54684812 None:intergenic 30.0%
TATGCTGCAATATAACTAAG+TGG + chr1_4:54684903-54684922 None:intergenic 30.0%
TGGTAAGGTACATAATGTTA+TGG + chr1_4:54684928-54684947 None:intergenic 30.0%
AACTGAAATGGAAAATGGTA+AGG + chr1_4:54684943-54684962 None:intergenic 30.0%
TTTGCAACTGAAATGGAAAA+TGG + chr1_4:54684948-54684967 None:intergenic 30.0%
! TTTGGAATTTGCAACTGAAA+TGG + chr1_4:54684955-54684974 None:intergenic 30.0%
TATTAAGTTCTACAACTCCA+TGG - chr1_4:54685055-54685074 Msa0170550:three_prime_UTR 30.0%
ATTAATAGCATAGTTCCATC+TGG - chr1_4:54685116-54685135 Msa0170550:three_prime_UTR 30.0%
AAAATGCTTCTTTCTTGTGT+TGG + chr1_4:54685286-54685305 None:intergenic 30.0%
!!! AACACAAGAAAGAAGCATTT+TGG - chr1_4:54685285-54685304 Msa0170550:CDS 30.0%
!!! AAGAAGCATTTTGGTTTTAC+AGG - chr1_4:54685294-54685313 Msa0170550:CDS 30.0%
ATATAATAAATCCAGGTCAC+TGG - chr1_4:54685339-54685358 Msa0170550:intron 30.0%
TCTTGCAGTATATACAATGA+AGG + chr1_4:54685679-54685698 None:intergenic 30.0%
TCAAAATTAAGGCATATGGT+TGG - chr1_4:54685770-54685789 Msa0170550:intron 30.0%
!! TGACAAATTAGTCTTTAGTG+TGG - chr1_4:54686181-54686200 Msa0170550:intron 30.0%
TAGCTGTAAAAGCTAACATA+TGG - chr1_4:54686284-54686303 Msa0170550:intron 30.0%
! ACCGTCACTTAACAATTTTA+GGG - chr1_4:54686316-54686335 Msa0170550:intron 30.0%
TCCCTAAAATTGTTAAGTGA+CGG + chr1_4:54686320-54686339 None:intergenic 30.0%
!! ACTCATTTTCTAGAGGAAAA+TGG - chr1_4:54686415-54686434 Msa0170550:intron 30.0%
! TGTTGTTCAGTATTGAATAC+TGG - chr1_4:54686555-54686574 Msa0170550:intron 30.0%
!! GCATATAGAGTTCTGAAAAT+AGG - chr1_4:54686605-54686624 Msa0170550:intron 30.0%
!! TATAGAGTTCTGAAAATAGG+AGG - chr1_4:54686608-54686627 Msa0170550:intron 30.0%
ATTGAGACAACCAAAATGTT+GGG + chr1_4:54686661-54686680 None:intergenic 30.0%
AATTGAGACAACCAAAATGT+TGG + chr1_4:54686662-54686681 None:intergenic 30.0%
ATTGAATGGTTTAAAAAGGC+TGG - chr1_4:54686725-54686744 Msa0170550:CDS 30.0%
TGAAAAGAATAGGTCCAAAA+TGG - chr1_4:54686765-54686784 Msa0170550:CDS 30.0%
TGTATTCTATAGTACCTGAA+GGG + chr1_4:54686867-54686886 None:intergenic 30.0%
TACTAGTTCCAATTTACATG+TGG - chr1_4:54687053-54687072 Msa0170550:CDS 30.0%
TCTTTAAGCCACATGTAAAT+TGG + chr1_4:54687064-54687083 None:intergenic 30.0%
TAAAGACCAAATTGTTCCAA+AGG - chr1_4:54687078-54687097 Msa0170550:CDS 30.0%
AAAGACCAAATTGTTCCAAA+GGG - chr1_4:54687079-54687098 Msa0170550:CDS 30.0%
ATTGGAGAATCAAGTAAAGT+TGG - chr1_4:54687121-54687140 Msa0170550:CDS 30.0%
TTGGAGAATCAAGTAAAGTT+GGG - chr1_4:54687122-54687141 Msa0170550:CDS 30.0%
AGCATATAAGCCAAGTTTAT+TGG - chr1_4:54687352-54687371 Msa0170550:five_prime_UTR 30.0%
ATAAGCCAAGTTTATTGGAT+AGG - chr1_4:54687357-54687376 Msa0170550:five_prime_UTR 30.0%
AATACAGTCGTATTTAGATG+TGG + chr1_4:54687510-54687529 None:intergenic 30.0%
TACCTGAAAAAAAACTCACA+TGG + chr1_4:54687550-54687569 None:intergenic 30.0%
!! TTTTATTAGAGGCACAGCTA+AGG + chr1_4:54684749-54684768 None:intergenic 35.0%
TCATAGAAATGAGACATGGA+TGG + chr1_4:54684978-54684997 None:intergenic 35.0%
TTCTTGTGTTGGATGAATCT+AGG + chr1_4:54685275-54685294 None:intergenic 35.0%
TCCATTTCCAACTGATTATG+CGG - chr1_4:54685589-54685608 Msa0170550:CDS 35.0%
AAGACTAGGTATGTGTTACA+TGG - chr1_4:54685735-54685754 Msa0170550:intron 35.0%
! ACGGTTTGGACTCAAAATTA+AGG - chr1_4:54685759-54685778 Msa0170550:intron 35.0%
GGACTCAAAATTAAGGCATA+TGG - chr1_4:54685766-54685785 Msa0170550:intron 35.0%
! AGTCCATCAATTTTGCGAAT+TGG - chr1_4:54685931-54685950 Msa0170550:intron 35.0%
TTGCCAATTCGCAAAATTGA+TGG + chr1_4:54685937-54685956 None:intergenic 35.0%
! TAGTGAGTTGACATTGATGT+GGG + chr1_4:54686082-54686101 None:intergenic 35.0%
! TTAGTGAGTTGACATTGATG+TGG + chr1_4:54686083-54686102 None:intergenic 35.0%
ACATCAATGTCAACTCACTA+AGG - chr1_4:54686082-54686101 Msa0170550:intron 35.0%
!! CAAATTAGTCTTTAGTGTGG+TGG - chr1_4:54686184-54686203 Msa0170550:intron 35.0%
! GACCGTCACTTAACAATTTT+AGG - chr1_4:54686315-54686334 Msa0170550:intron 35.0%
AACCAAAATGTTGGGTATAC+AGG + chr1_4:54686653-54686672 None:intergenic 35.0%
CAATATACTCTTCCTCCTTA+GGG + chr1_4:54686709-54686728 None:intergenic 35.0%
TCAATATACTCTTCCTCCTT+AGG + chr1_4:54686710-54686729 None:intergenic 35.0%
! AGGAGGAAGAGTATATTGAA+TGG - chr1_4:54686711-54686730 Msa0170550:CDS 35.0%
GATGTCAAGCTGAAAAGAAT+AGG - chr1_4:54686755-54686774 Msa0170550:CDS 35.0%
GTATTCTATAGTACCTGAAG+GGG + chr1_4:54686866-54686885 None:intergenic 35.0%
GTGTATTCTATAGTACCTGA+AGG + chr1_4:54686868-54686887 None:intergenic 35.0%
ATGCATGTCTTTATGTAGCT+TGG - chr1_4:54686941-54686960 Msa0170550:CDS 35.0%
! AGAAACACCAATGGATTTAC+AGG + chr1_4:54686992-54687011 None:intergenic 35.0%
TGGAACTAGTACATAGTAAG+TGG + chr1_4:54687044-54687063 None:intergenic 35.0%
AGGCGTATTTAATCGAAGAT+TGG - chr1_4:54687103-54687122 Msa0170550:CDS 35.0%
TGGAGAATCAAGTAAAGTTG+GGG - chr1_4:54687123-54687142 Msa0170550:CDS 35.0%
TCTGATGATTGATGTTCTCA+AGG - chr1_4:54687165-54687184 Msa0170550:CDS 35.0%
ATTATGGAAGGCAAAGTTCA+TGG + chr1_4:54687213-54687232 None:intergenic 35.0%
! TGTTTATTTGGAGGTTAGTC+AGG - chr1_4:54687317-54687336 Msa0170550:five_prime_UTR 35.0%
GATAGGTAAAAAACATGTGC+TGG - chr1_4:54687374-54687393 Msa0170550:five_prime_UTR 35.0%
CAGACATGAAATCAGAAATC+AGG + chr1_4:54687404-54687423 None:intergenic 35.0%
CTGATTTCTGATTTCATGTC+TGG - chr1_4:54687402-54687421 Msa0170550:five_prime_UTR 35.0%
!!! GACCATGTGAGTTTTTTTTC+AGG - chr1_4:54687545-54687564 Msa0170550:five_prime_UTR 35.0%
GCTAAGGAGTTGTGGAATAT+GGG + chr1_4:54684733-54684752 None:intergenic 40.0%
AGCTAAGGAGTTGTGGAATA+TGG + chr1_4:54684734-54684753 None:intergenic 40.0%
ATGTGATAGCAATACCTCAG+TGG - chr1_4:54684809-54684828 Msa0170550:three_prime_UTR 40.0%
CACCACTCACATGTATTATG+TGG - chr1_4:54684870-54684889 Msa0170550:three_prime_UTR 40.0%
CACCACATAATACATGTGAG+TGG + chr1_4:54684875-54684894 None:intergenic 40.0%
GAAATGAGACATGGATGGTT+TGG + chr1_4:54684973-54684992 None:intergenic 40.0%
TTCAGCACCACTAAGCATTA+AGG + chr1_4:54685084-54685103 None:intergenic 40.0%
AGCATAGTTCCATCTGGATT+AGG - chr1_4:54685122-54685141 Msa0170550:three_prime_UTR 40.0%
ATGAATCTAGGCTGAGAAGA+AGG + chr1_4:54685263-54685282 None:intergenic 40.0%
!! AGCCTGCTGATTTGTATAAC+CGG - chr1_4:54685390-54685409 Msa0170550:intron 40.0%
TCCGCATAATCAGTTGGAAA+TGG + chr1_4:54685593-54685612 None:intergenic 40.0%
ACCTTCCAGCAGAAACATAT+CGG + chr1_4:54685616-54685635 None:intergenic 40.0%
TAGGTATGTGTTACATGGCA+CGG - chr1_4:54685740-54685759 Msa0170550:intron 40.0%
TACTGCTAGAGACTATGATG+TGG - chr1_4:54686010-54686029 Msa0170550:intron 40.0%
TGATTCCATATCATGGCCAT+TGG + chr1_4:54686210-54686229 None:intergenic 40.0%
ATGGCCATGATATGGAATCA+AGG - chr1_4:54686210-54686229 Msa0170550:intron 40.0%
TCCACCTTGATTCCATATCA+TGG + chr1_4:54686217-54686236 None:intergenic 40.0%
ATGATATGGAATCAAGGTGG+AGG - chr1_4:54686216-54686235 Msa0170550:intron 40.0%
! GTCCTGTATACCCAACATTT+TGG - chr1_4:54686648-54686667 Msa0170550:intron 40.0%
CTCAATTCTTTGCAGACATG+TGG - chr1_4:54686675-54686694 Msa0170550:CDS 40.0%
ATAGGTCCAAAATGGTATCG+CGG - chr1_4:54686773-54686792 Msa0170550:CDS 40.0%
! ACTGGTGTCAAACCTTTATC+AGG - chr1_4:54686833-54686852 Msa0170550:CDS 40.0%
CTTTATGTAGCTTGGTCCTA+AGG - chr1_4:54686949-54686968 Msa0170550:CDS 40.0%
TTCTGTACATCCTCTACCTT+AGG + chr1_4:54686968-54686987 None:intergenic 40.0%
ACAGAAGCCTGTAAATCCAT+TGG - chr1_4:54686982-54687001 Msa0170550:CDS 40.0%
! ATCCATTGGTGTTTCTCTCA+AGG - chr1_4:54686996-54687015 Msa0170550:CDS 40.0%
TTTCTCTCAAGGCTCATTCT+TGG - chr1_4:54687007-54687026 Msa0170550:CDS 40.0%
GAATCAAGTAAAGTTGGGGT+AGG - chr1_4:54687127-54687146 Msa0170550:CDS 40.0%
AAACTTGGCTTATATGCTGC+AGG + chr1_4:54687350-54687369 None:intergenic 40.0%
!! TGTGGTCAAACATTGACTCA+TGG + chr1_4:54687492-54687511 None:intergenic 40.0%
AGCAATACCTCAGTGGTGAA+TGG - chr1_4:54684816-54684835 Msa0170550:three_prime_UTR 45.0%
TGTTGTTCCATTCACCACTG+AGG + chr1_4:54684826-54684845 None:intergenic 45.0%
!! TACATGTGAGTGGTGCTGAT+TGG + chr1_4:54684865-54684884 None:intergenic 45.0%
ACTAAGCATTAAGGAGGCCA+TGG + chr1_4:54685075-54685094 None:intergenic 45.0%
ATGGCCTCCTTAATGCTTAG+TGG - chr1_4:54685074-54685093 Msa0170550:three_prime_UTR 45.0%
AGCACCACTAAGCATTAAGG+AGG + chr1_4:54685081-54685100 None:intergenic 45.0%
CTCACAGAACCTAATCCAGA+TGG + chr1_4:54685134-54685153 None:intergenic 45.0%
CTCCGGTTATACAAATCAGC+AGG + chr1_4:54685395-54685414 None:intergenic 45.0%
AGAATGCGAGTTGTGGATGT+TGG - chr1_4:54685413-54685432 Msa0170550:intron 45.0%
GGAACTGGATTCACTACTCT+TGG - chr1_4:54685440-54685459 Msa0170550:CDS 45.0%
TATCGGTCCGCATAATCAGT+TGG + chr1_4:54685599-54685618 None:intergenic 45.0%
! ACCGATATGTTTCTGCTGGA+AGG - chr1_4:54685612-54685631 Msa0170550:CDS 45.0%
ATGTGTTACATGGCACGGTT+TGG - chr1_4:54685745-54685764 Msa0170550:intron 45.0%
GCCATGATATGGAATCAAGG+TGG - chr1_4:54686213-54686232 Msa0170550:intron 45.0%
TGACACCTCCACCAAATATG+TGG + chr1_4:54686252-54686271 None:intergenic 45.0%
TGACAGAACAACCCATGATG+AGG + chr1_4:54686814-54686833 None:intergenic 45.0%
! ATCATGGGTTGTTCTGTCAC+TGG - chr1_4:54686815-54686834 Msa0170550:CDS 45.0%
AGCCTTGAGAGAAACACCAA+TGG + chr1_4:54687001-54687020 None:intergenic 45.0%
ACCAAATTGTTCCAAAGGGC+AGG - chr1_4:54687083-54687102 Msa0170550:CDS 45.0%
GATTAAATACGCCTGCCCTT+TGG + chr1_4:54687097-54687116 None:intergenic 45.0%
ATGTCTTCAGTCCAGTGACC+TGG + chr1_4:54685353-54685372 None:intergenic 50.0%
TAACCGGAGAATGCGAGTTG+TGG - chr1_4:54685406-54685425 Msa0170550:intron 50.0%
CATCCACAACTCGCATTCTC+CGG + chr1_4:54685412-54685431 None:intergenic 50.0%
ATGCGAGTTGTGGATGTTGG+AGG - chr1_4:54685416-54685435 Msa0170550:intron 50.0%
TGATCAGTCTCCTCATCAGC+TGG - chr1_4:54685502-54685521 Msa0170550:CDS 50.0%
!! TTAGCCTTAGCCAGCTGATG+AGG + chr1_4:54685515-54685534 None:intergenic 50.0%
GCTGGCTAAGGCTAAGAAGA+AGG - chr1_4:54685520-54685539 Msa0170550:CDS 50.0%
GTCTTTAGTGTGGTGGCCAA+TGG - chr1_4:54686191-54686210 Msa0170550:intron 50.0%
ATGGAATCAAGGTGGAGGAC+AGG - chr1_4:54686221-54686240 Msa0170550:intron 50.0%
GACAGGAGGAGCCACATATT+TGG - chr1_4:54686238-54686257 Msa0170550:intron 50.0%
AGGAGGAGCCACATATTTGG+TGG - chr1_4:54686241-54686260 Msa0170550:intron 50.0%
! AGGAGCCACATATTTGGTGG+AGG - chr1_4:54686244-54686263 Msa0170550:intron 50.0%
TTAATGCCACGCTGTGGATC+AGG + chr1_4:54686581-54686600 None:intergenic 50.0%
GCTTCTTTAATGCCACGCTG+TGG + chr1_4:54686587-54686606 None:intergenic 50.0%
GGAGGCAAAGCGTGCATTAT+AGG - chr1_4:54686626-54686645 Msa0170550:intron 50.0%
CATGTGGATGCTCTTCCCTA+AGG - chr1_4:54686691-54686710 Msa0170550:CDS 50.0%
CAAAATGGTATCGCGGTGTG+CGG - chr1_4:54686780-54686799 Msa0170550:CDS 50.0%
GTAGCTTGGTCCTAAGGTAG+AGG - chr1_4:54686955-54686974 Msa0170550:CDS 50.0%
!! GCCTGCCCTTTGGAACAATT+TGG + chr1_4:54687087-54687106 None:intergenic 50.0%
GAGGCACAGCTAAGGAGTTG+TGG + chr1_4:54684741-54684760 None:intergenic 55.0%
AGGCTGAGAAGAAGGCCTTG+CGG + chr1_4:54685255-54685274 None:intergenic 55.0%
CGAGTTGTGGATGTTGGAGG+AGG - chr1_4:54685419-54685438 Msa0170550:intron 55.0%
GTGGATGTTGGAGGAGGAAC+TGG - chr1_4:54685425-54685444 Msa0170550:intron 55.0%
GTCTCCTCATCAGCTGGCTA+AGG - chr1_4:54685508-54685527 Msa0170550:CDS 55.0%
! GCGGACCGATATGTTTCTGC+TGG - chr1_4:54685608-54685627 Msa0170550:CDS 55.0%
GGTGGCCAATGGCCATGATA+TGG - chr1_4:54686202-54686221 Msa0170550:intron 55.0%
GAATCAAGGTGGAGGACAGG+AGG - chr1_4:54686224-54686243 Msa0170550:intron 55.0%
GTGGATGCTCTTCCCTAAGG+AGG - chr1_4:54686694-54686713 Msa0170550:CDS 55.0%
! CGCACACCGCGATACCATTT+TGG + chr1_4:54686782-54686801 None:intergenic 55.0%
AGGGGAGAGTCGCCTGATAA+AGG + chr1_4:54686848-54686867 None:intergenic 55.0%
GATGCAGCGTCTCATCCGCA+AGG - chr1_4:54685237-54685256 Msa0170550:CDS 60.0%
! TACTGGCCTGATCCACAGCG+TGG - chr1_4:54686572-54686591 Msa0170550:intron 60.0%
AATGGTATCGCGGTGTGCGG+CGG - chr1_4:54686783-54686802 Msa0170550:CDS 60.0%
ATCAGGCGACTCTCCCCTTC+AGG - chr1_4:54686850-54686869 Msa0170550:CDS 60.0%
TATCGCGGTGTGCGGCGGCA+CGG - chr1_4:54686788-54686807 Msa0170550:CDS 70.0%
CGGCGGCACGGCCTCATCAT+GGG - chr1_4:54686800-54686819 Msa0170550:CDS 70.0%
GCGGCGGCACGGCCTCATCA+TGG - chr1_4:54686799-54686818 Msa0170550:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 54684695 54687613 54684695 ID=Msa0170550;Name=Msa0170550
chr1_4 mRNA 54684695 54687613 54684695 ID=Msa0170550-mRNA-1;Parent=Msa0170550;Name=Msa0170550-mRNA-1;_AED=0.02;_eAED=0.02;_QI=379|1|1|1|1|1|3|499|340
chr1_4 exon 54684695 54685349 54684695 ID=Msa0170550-mRNA-1:exon:16348;Parent=Msa0170550-mRNA-1
chr1_4 exon 54685437 54685743 54685437 ID=Msa0170550-mRNA-1:exon:16347;Parent=Msa0170550-mRNA-1
chr1_4 exon 54686675 54687613 54686675 ID=Msa0170550-mRNA-1:exon:16346;Parent=Msa0170550-mRNA-1
chr1_4 five_prime_UTR 54687235 54687613 54687235 ID=Msa0170550-mRNA-1:five_prime_utr;Parent=Msa0170550-mRNA-1
chr1_4 CDS 54686675 54687234 54686675 ID=Msa0170550-mRNA-1:cds;Parent=Msa0170550-mRNA-1
chr1_4 CDS 54685437 54685743 54685437 ID=Msa0170550-mRNA-1:cds;Parent=Msa0170550-mRNA-1
chr1_4 CDS 54685194 54685349 54685194 ID=Msa0170550-mRNA-1:cds;Parent=Msa0170550-mRNA-1
chr1_4 three_prime_UTR 54684695 54685193 54684695 ID=Msa0170550-mRNA-1:three_prime_utr;Parent=Msa0170550-mRNA-1
Gene Sequence

>Msa0170550

ATGGCCTCCTTAATGCTTAGTGGTGCTGAAAATACAAAGCTTATTAATAGCATAGTTCCATCTGGATTAGGTTCTGTGAGTCTTAACTTTCACAAGAAGTGTTTCATCAGAAATAATGCAGTTTCATATGGTAACAAATACAGTGCTAGAAACTTGACAGCGCGATGCAGCGTCTCATCCGCAAGGCCTTCTTCTCAGCCTAGATTCATCCAACACAAGAAAGAAGCATTTTGGTTTTACAGGTTTTTGTCAATTGTGTATGATCATATAATAAATCCAGGTCACTGGACTGAAGACATGAGAGATGATGCACTTGAGCCTGCTGATTTGTATAACCGGAGAATGCGAGTTGTGGATGTTGGAGGAGGAACTGGATTCACTACTCTTGGTATAGTGAAGCATGTTGATGCTAAAAATGTTACAATTCTTGATCAGTCTCCTCATCAGCTGGCTAAGGCTAAGAAGAAGGAAGCATTGAAAGAATGTAAGATAATTGAAGGTGATGCAGAAGATCTTCCATTTCCAACTGATTATGCGGACCGATATGTTTCTGCTGGAAGTATTGAATACTGGCCTGATCCACAGCGTGGCATTAAAGAAGCATATAGAGTTCTGAAAATAGGAGGCAAAGCGTGCATTATAGGTCCTGTATACCCAACATTTTGGTTGTCTCAATTCTTTGCAGACATGTGGATGCTCTTCCCTAAGGAGGAAGAGTATATTGAATGGTTTAAAAAGGCTGGTTTCAAAGATGTCAAGCTGAAAAGAATAGGTCCAAAATGGTATCGCGGTGTGCGGCGGCACGGCCTCATCATGGGTTGTTCTGTCACTGGTGTCAAACCTTTATCAGGCGACTCTCCCCTTCAGCTTGGTCCTAAGGTAGAGGATGTACAGAAGCCTGTAAATCCATTGGTGTTTCTCTCAAGGCTCATTCTTGGTACAATTGCAGCCACTTACTATGTACTAGTTCCAATTTACATGTGGCTTAAAGACCAAATTGTTCCAAAGGGCAGGCGTATTTAA

Protein sequence

>Msa0170550

MASLMLSGAENTKLINSIVPSGLGSVSLNFHKKCFIRNNAVSYGNKYSARNLTARCSVSSARPSSQPRFIQHKKEAFWFYRFLSIVYDHIINPGHWTEDMRDDALEPADLYNRRMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKKKEALKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACIIGPVYPTFWLSQFFADMWMLFPKEEEYIEWFKKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPLSGDSPLQLGPKVEDVQKPVNPLVFLSRLILGTIAATYYVLVPIYMWLKDQIVPKGRRI*