AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0404880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0404880 MtrunA17_Chr3g0095421 98.634 366 5 0 1 366 1 366 0.0 740
Msa0404880 MtrunA17_Chr3g0127491 41.284 327 178 7 33 354 34 351 1.42e-79 248
Msa0404880 MtrunA17_Chr7g0221791 32.738 336 183 12 37 356 6 314 8.49e-34 127
Msa0404880 MtrunA17_Chr7g0222171 30.029 343 184 11 37 356 6 315 6.31e-32 122
Msa0404880 MtrunA17_Chr7g0274061 30.422 332 189 11 37 350 13 320 2.80e-30 118
Msa0404880 MtrunA17_Chr7g0274071 29.204 339 202 12 25 350 3 316 2.18e-28 113
Msa0404880 MtrunA17_Chr7g0222121 30.352 369 182 13 37 356 6 348 1.02e-27 112
Msa0404880 MtrunA17_Chr1g0204651 29.052 327 193 11 37 348 7 309 3.89e-27 109
Msa0404880 MtrunA17_Chr7g0274041 27.744 328 196 12 37 348 9 311 2.33e-22 96.7
Msa0404880 MtrunA17_Chr2g0321131 26.273 373 221 17 17 359 33 381 1.76e-21 94.7
Msa0404880 MtrunA17_Chr8g0380261 24.860 358 207 13 44 355 48 389 5.37e-20 90.5
Msa0404880 MtrunA17_Chr1g0167421 24.625 333 198 10 39 331 65 384 3.81e-18 85.1
Msa0404880 MtrunA17_Chr1g0169691 28.939 311 190 10 40 336 6 299 7.85e-18 83.6
Msa0404880 MtrunA17_Chr7g0274081 30.857 175 105 5 186 353 4 169 1.50e-16 77.4
Msa0404880 MtrunA17_Chr4g0018921 25.153 326 173 12 45 351 12 285 1.95e-16 79.3
Msa0404880 MtrunA17_Chr1g0173621 25.249 301 168 10 83 362 45 309 1.76e-15 76.3
Msa0404880 MtrunA17_Chr5g0447941 26.829 328 156 13 43 344 16 285 2.30e-13 70.1
Msa0404880 MtrunA17_Chr5g0447951 26.829 328 156 13 43 344 16 285 2.34e-13 70.1
Msa0404880 MtrunA17_Chr5g0447961 26.829 328 156 13 43 344 16 285 2.34e-13 70.1
Msa0404880 MtrunA17_Chr3g0121001 25.478 314 159 11 77 359 39 308 3.33e-13 69.7
Msa0404880 MtrunA17_Chr7g0239701 26.106 226 124 8 144 354 94 291 4.26e-13 69.3
Msa0404880 MtrunA17_Chr7g0221771 41.975 81 46 1 277 356 8 88 8.43e-12 61.6
Msa0404880 MtrunA17_Chr6g0479981 26.460 291 161 12 79 352 38 292 1.11e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0404880 AT1G06690.1 75.287 348 84 1 21 366 30 377 0.0 555
Msa0404880 AT5G53580.1 42.073 328 164 8 36 352 38 350 1.98e-76 240
Msa0404880 AT1G60750.1 31.385 325 179 10 37 352 10 299 1.01e-29 117
Msa0404880 AT1G60710.1 29.882 338 183 12 37 352 9 314 9.34e-28 112
Msa0404880 AT1G60730.1 29.674 337 185 11 37 352 9 314 1.61e-27 111
Msa0404880 AT1G60680.1 29.787 329 196 9 37 352 9 315 7.30e-27 109
Msa0404880 AT1G60690.1 30.267 337 183 12 37 352 9 314 1.44e-26 108
Msa0404880 AT1G10810.1 30.395 329 191 11 37 351 9 313 1.47e-26 108
Msa0404880 AT1G60730.3 28.291 357 184 12 37 352 9 334 2.91e-26 108
Msa0404880 AT2G27680.1 25.067 375 221 16 18 359 24 371 1.63e-23 100
Msa0404880 AT1G10810.3 32.636 239 139 8 127 351 31 261 4.67e-19 86.7
Msa0404880 AT1G04690.1 28.990 307 185 12 40 331 6 294 5.29e-19 87.0
Msa0404880 AT1G04420.1 25.070 355 209 11 17 331 42 379 5.31e-18 85.1
Msa0404880 AT1G60680.2 29.614 233 134 7 37 261 9 219 1.68e-16 78.6
Msa0404880 AT1G10810.2 30.000 230 132 7 37 259 9 216 4.26e-16 77.8
Msa0404880 AT2G37760.5 25.000 284 154 11 79 343 30 273 4.97e-13 69.3
Msa0404880 AT2G37760.4 25.000 284 154 11 79 343 30 273 5.20e-13 69.3
Msa0404880 AT2G37760.3 25.000 284 154 11 79 343 30 273 5.20e-13 69.3
Msa0404880 AT5G62420.1 25.333 300 166 13 71 351 26 286 6.59e-13 69.3
Msa0404880 AT2G37760.2 25.352 284 153 11 79 343 30 273 6.82e-13 69.3
Msa0404880 AT2G37760.1 25.352 284 153 11 79 343 30 273 6.82e-13 69.3

Find 101 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCGACACAGCTGAAGTTTA+TGG 0.132998 3_2:-38003942 Msa0404880:CDS
TGTACCTTTGTTAGGAATTC+TGG 0.171436 3_2:+38001580 None:intergenic
TATAACTTTACAAATGATTT+AGG 0.209980 3_2:+38000505 None:intergenic
TCGAAAATTAAGCCTGTTAT+TGG 0.217835 3_2:-38000593 Msa0404880:CDS
AGTTGAAGATAAGTTGAAAT+TGG 0.220838 3_2:-38004591 Msa0404880:CDS
TAAACTACAGCCTCATTTAT+AGG 0.233447 3_2:-38002693 Msa0404880:CDS
TAGAAGAGTTTCTGAATTTA+CGG 0.235858 3_2:+38003818 None:intergenic
TCTTAAGCAGGTGTTCTTAC+TGG 0.244612 3_2:-38001655 Msa0404880:intron
AGACAAAACTTTATTGAATT+AGG 0.256226 3_2:-38000110 Msa0404880:three_prime_UTR
AGGATTTCACCTTGAGCTAT+TGG 0.277879 3_2:+38002604 None:intergenic
AGAAAAGTTGTACCTTTGTT+AGG 0.288849 3_2:+38001572 None:intergenic
TGGAATTGGAGCTTGGTCTT+GGG 0.303830 3_2:-38004540 Msa0404880:CDS
CTGAAGAAGATCACTGAAAT+AGG 0.304108 3_2:-38001470 Msa0404880:CDS
AAATTGCATTCATAGTAAAT+TGG 0.305786 3_2:-38000462 Msa0404880:three_prime_UTR
TGACCCATCGACACTGAAAT+TGG 0.329657 3_2:+38000244 None:intergenic
TCAACTGGAAAGCCAATAAC+AGG 0.332654 3_2:+38000581 None:intergenic
GAACAAGCTGAAGAATTTAA+AGG 0.335134 3_2:-38000671 Msa0404880:CDS
GTAAATTCAGAAACTCTTCT+AGG 0.336089 3_2:-38003816 Msa0404880:CDS
GGTAGCTGAGCTACGAAGTT+TGG 0.341379 3_2:-38000618 Msa0404880:CDS
TTTGTTAGGTATCACTAAAC+TGG 0.342680 3_2:-38000742 Msa0404880:intron
TTGGAATTGGAGCTTGGTCT+TGG 0.353357 3_2:-38004541 Msa0404880:CDS
GCGACTTCAACTTCAACATT+TGG 0.360987 3_2:+38003676 None:intergenic
TATAGGGTCCCTGAAGAAAA+TGG 0.367229 3_2:-38002676 Msa0404880:CDS
CTTGGGGTGATACTACTTAC+TGG 0.369955 3_2:-38004523 Msa0404880:CDS
AAGGTGTCAACAATTGGAAT+TGG 0.373397 3_2:-38004554 Msa0404880:CDS
CTAGGTGATGCCGTTCAAAA+AGG 0.383832 3_2:-38003336 Msa0404880:CDS
AACTTCAGCTGTGTCGATAA+AGG 0.389680 3_2:+38003947 None:intergenic
GTTGAAGATAAGTTGAAATT+GGG 0.392585 3_2:-38004590 Msa0404880:CDS
GATTTGAAGGTGTCAACAAT+TGG 0.398533 3_2:-38004560 Msa0404880:CDS
ACATAATTATCTTGTGGGTT+AGG 0.400873 3_2:-38000182 Msa0404880:three_prime_UTR
CCATGGTAGTGCAGCAAACT+TGG 0.401209 3_2:+38003651 None:intergenic
AAATGAGGCTGTAGTTTACT+TGG 0.401972 3_2:+38002698 None:intergenic
AAACTACATAATTATCTTGT+GGG 0.403962 3_2:-38000187 Msa0404880:three_prime_UTR
TCAGGGTATATTGATGGTCT+AGG 0.409527 3_2:-38003354 Msa0404880:intron
ACAGCTGAAGTTTATGGCTC+TGG 0.411371 3_2:-38003936 Msa0404880:CDS
GGAAATGTTGTACCAATTCC+TGG 0.415471 3_2:-38000707 Msa0404880:CDS
GAAGAATTTAAAGGTGCATT+GGG 0.420507 3_2:-38000662 Msa0404880:CDS
ACTCCACGAAATCCTCCATC+TGG 0.425582 3_2:-38001625 Msa0404880:CDS
TGGATCTGTATCAGCTTCAT+TGG 0.427317 3_2:-38003561 Msa0404880:intron
GTTGGTGTTTCAAACTATAG+TGG 0.441212 3_2:-38003300 Msa0404880:intron
TGAAGAATTTAAAGGTGCAT+TGG 0.443008 3_2:-38000663 Msa0404880:CDS
AAACTACAGCCTCATTTATA+GGG 0.445249 3_2:-38002692 Msa0404880:CDS
GCATTCAATACAAGTATTGA+TGG 0.449691 3_2:-38003978 Msa0404880:CDS
GCTGCACTACCATGGAGATT+AGG 0.454709 3_2:-38003643 Msa0404880:CDS
GCGCGCTTAGAACACTTTCA+CGG 0.470958 3_2:+38003620 None:intergenic
CAGCTGAAGTTTATGGCTCT+GGG 0.477050 3_2:-38003935 Msa0404880:CDS
CTTCAGGGACCCTATAAATG+AGG 0.477573 3_2:+38002683 None:intergenic
AAGTCATTTCGAGTCGATCA+AGG 0.479301 3_2:+38003587 None:intergenic
CCATTGAGAATGAAAATTGA+TGG 0.480703 3_2:+38004708 None:intergenic
TATTAAAGAACGAAAACAAA+AGG 0.484819 3_2:-38003701 Msa0404880:CDS
TTTACTTGGTTTGAAGCCAA+TGG 0.488516 3_2:+38002712 None:intergenic
CATTCAATACAAGTATTGAT+GGG 0.489245 3_2:-38003977 Msa0404880:CDS
ATTGGGTGGTTCTGATTTGA+AGG 0.491620 3_2:-38004573 Msa0404880:CDS
ATTACCAATTTCAGTGTCGA+TGG 0.492854 3_2:-38000248 Msa0404880:three_prime_UTR
AATTATCTTGTGGGTTAGGA+AGG 0.499853 3_2:-38000178 Msa0404880:three_prime_UTR
TTTACAAATGATTTAGGAGG+GGG 0.500903 3_2:+38000511 None:intergenic
AAGAAAACCTGTGATGAACT+TGG 0.503115 3_2:-38002649 Msa0404880:CDS
CAACAATTGGAATTGGAGCT+TGG 0.503149 3_2:-38004547 Msa0404880:CDS
TCACTATACATACAAGAATA+CGG 0.506190 3_2:+38000212 None:intergenic
GGCCCAGATGGAGGATTTCG+TGG 0.511209 3_2:+38001622 None:intergenic
AAAACTACATAATTATCTTG+TGG 0.519984 3_2:-38000188 Msa0404880:three_prime_UTR
GGAATTGGAGCTTGGTCTTG+GGG 0.521019 3_2:-38004539 Msa0404880:CDS
CCTTCATTTCCCCATACTCC+AGG 0.522337 3_2:+38003454 None:intergenic
AATTTAAAGGTGCATTGGGA+TGG 0.525566 3_2:-38000658 Msa0404880:CDS
TCAGTGATCTTCTTCAGCAG+TGG 0.532128 3_2:+38001476 None:intergenic
AACTTTACAAATGATTTAGG+AGG 0.532241 3_2:+38000508 None:intergenic
GAAGATAAGTTGAAATTGGG+TGG 0.540548 3_2:-38004587 Msa0404880:CDS
ACTTTACAAATGATTTAGGA+GGG 0.540756 3_2:+38000509 None:intergenic
TTAGGTATCACTAAACTGGC+TGG 0.543245 3_2:-38000738 Msa0404880:intron
AAAGGACTTGTAAAGGCTGT+TGG 0.543851 3_2:-38003318 Msa0404880:CDS
GTACAATAAAACTTCTACAC+AGG 0.549770 3_2:-38001441 Msa0404880:intron
TGTAATCCCAAGTTCATCAC+AGG 0.550263 3_2:+38002642 None:intergenic
CCTGGAGTATGGGGAAATGA+AGG 0.554285 3_2:-38003454 Msa0404880:intron
TTACCAATTTCAGTGTCGAT+GGG 0.559065 3_2:-38000247 Msa0404880:three_prime_UTR
CTAAACTGGCTGGTAGCTCA+AGG 0.571830 3_2:-38000728 Msa0404880:CDS
CATTGAGAATGAAAATTGAT+GGG 0.572653 3_2:+38004709 None:intergenic
CCAAGTTTGCTGCACTACCA+TGG 0.574899 3_2:-38003651 Msa0404880:CDS
ATATGCAATCTTGTGTAACA+AGG 0.576565 3_2:+38004826 None:intergenic
ATGGAGATTGACTAATGAAG+AGG 0.577740 3_2:-38000639 Msa0404880:CDS
TAATAAAGTGCTTATCTACA+AGG 0.578134 3_2:-38000392 Msa0404880:three_prime_UTR
ATTCAGAAACTCTTCTAGGA+AGG 0.586726 3_2:-38003812 Msa0404880:intron
ATTCTACCTCGAGGCCCAGA+TGG 0.592694 3_2:+38001610 None:intergenic
CTTTACAAATGATTTAGGAG+GGG 0.594574 3_2:+38000510 None:intergenic
AGTCATTTCGAGTCGATCAA+GGG 0.598999 3_2:+38003588 None:intergenic
CAAGAAGAGAGGTATTCCAT+TGG 0.599396 3_2:-38002728 Msa0404880:CDS
CTACCTCGAGGCCCAGATGG+AGG 0.606001 3_2:+38001613 None:intergenic
CTCCACGAAATCCTCCATCT+GGG 0.608199 3_2:-38001624 Msa0404880:CDS
ATTCAATACAAGTATTGATG+GGG 0.611038 3_2:-38003976 Msa0404880:CDS
TACTCCAGAATTCCTAACAA+AGG 0.612031 3_2:-38001584 Msa0404880:intron
AGAAAACCTGTGATGAACTT+GGG 0.616494 3_2:-38002648 Msa0404880:CDS
CTTTCACGGCCTAATCTCCA+TGG 0.617396 3_2:+38003634 None:intergenic
GCATATTCACCAATAGCTCA+AGG 0.621156 3_2:-38002613 Msa0404880:intron
TATGAACAGCTCAAGAAGAG+AGG 0.625701 3_2:-38002739 Msa0404880:CDS
TCGACTCGAAATGACTTCTG+TGG 0.632893 3_2:-38003581 Msa0404880:CDS
TATGCAATCTTGTGTAACAA+GGG 0.660322 3_2:+38004827 None:intergenic
TTCAATACAAGTATTGATGG+GGG 0.677730 3_2:-38003975 Msa0404880:CDS
AGCTGAAGTTTATGGCTCTG+GGG 0.678469 3_2:-38003934 Msa0404880:intron
AATCCTCCATCTGGGCCTCG+AGG 0.680321 3_2:-38001616 Msa0404880:CDS
ATGGCTCTTCATATAAACAG+TGG 0.684583 3_2:-38004689 Msa0404880:CDS
AGTGATGAAGAAGTTGTATG+TGG 0.687872 3_2:+38004787 None:intergenic
GGAGTATAAATTCTACCTCG+AGG 0.694742 3_2:+38001601 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATGATTAATTAAATTTAAA+TGG + chr3_2:38000763-38000782 None:intergenic 10.0%
!! CATTTAAATTTAATTAATCA+TGG - chr3_2:38000761-38000780 Msa0404880:intron 10.0%
!!! TATTTATTTGTTATAGTAAA+TGG - chr3_2:38001476-38001495 Msa0404880:CDS 10.0%
!! AATTAATGTATTTAGTTATT+TGG - chr3_2:38002574-38002593 Msa0404880:intron 10.0%
!!! AAGTAAAAACAAATCAATTT+TGG - chr3_2:38000446-38000465 Msa0404880:three_prime_UTR 15.0%
!! ATTAATTAAATTGGTACATT+TGG + chr3_2:38001451-38001470 None:intergenic 15.0%
!! AAATGTACCAATTTAATTAA+TGG - chr3_2:38001450-38001469 Msa0404880:CDS 15.0%
!! AATAGTTCCATTAATTAAAT+TGG + chr3_2:38001460-38001479 None:intergenic 15.0%
!! TTTAAAAAATTAGTTATGCA+GGG + chr3_2:38002406-38002425 None:intergenic 15.0%
!!! TTTTAAAAAATTAGTTATGC+AGG + chr3_2:38002407-38002426 None:intergenic 15.0%
!! CTAGAAAACATTATAATATA+CGG - chr3_2:38003083-38003102 Msa0404880:intron 15.0%
!! TATAACTTTACAAATGATTT+AGG + chr3_2:38004373-38004392 None:intergenic 15.0%
!!! GTAATTTCATGTTATTTTAT+TGG + chr3_2:38004841-38004860 None:intergenic 15.0%
!!! TTTGGTATAATTTTCATTTG+CGG - chr3_2:38001099-38001118 Msa0404880:intron 20.0%
!! TATTAAAGAACGAAAACAAA+AGG - chr3_2:38001174-38001193 Msa0404880:intron 20.0%
!! AGACTTTCAATATAATATGT+CGG + chr3_2:38001634-38001653 None:intergenic 20.0%
!! TTTCTGTTTACATAGAAAAA+AGG + chr3_2:38002099-38002118 None:intergenic 20.0%
!!! AGTATTTTTCTTTTAATACG+TGG + chr3_2:38002312-38002331 None:intergenic 20.0%
!! AAGGTAGGTATTTATAAAAA+GGG + chr3_2:38002343-38002362 None:intergenic 20.0%
!! AAAGGTAGGTATTTATAAAA+AGG + chr3_2:38002344-38002363 None:intergenic 20.0%
!! TTTATAAATACCTACCTTTA+AGG - chr3_2:38002345-38002364 Msa0404880:intron 20.0%
!!! AGGGATTTTTTTTTTTTGAA+AGG - chr3_2:38002614-38002633 Msa0404880:CDS 20.0%
!!! GGGATTTTTTTTTTTTGAAA+GGG - chr3_2:38002615-38002634 Msa0404880:CDS 20.0%
!! GTTACTAAATATAACTAACA+TGG - chr3_2:38002687-38002706 Msa0404880:CDS 20.0%
!! TAACATGGTTAATATATATC+TGG - chr3_2:38002702-38002721 Msa0404880:CDS 20.0%
!! AGTTTAATTATAATCATGGA+GGG - chr3_2:38002907-38002926 Msa0404880:intron 20.0%
!! AAGTAATCATAAACTATTGT+CGG - chr3_2:38002945-38002964 Msa0404880:intron 20.0%
!!! TTTTTGTCTTAAAGAATTTG+AGG - chr3_2:38002998-38003017 Msa0404880:intron 20.0%
!!! TGATTTTGCATAAATTTTTG+CGG + chr3_2:38003197-38003216 None:intergenic 20.0%
!!! CAAATTTTCAGTTTATATCA+TGG + chr3_2:38003479-38003498 None:intergenic 20.0%
!!! GTTGTCTAAGTAAATATTTT+TGG - chr3_2:38003827-38003846 Msa0404880:CDS 20.0%
!!! AAATATTTTTGGTATTCTCA+TGG - chr3_2:38003838-38003857 Msa0404880:intron 20.0%
!!! AATATTTTTGGTATTCTCAT+GGG - chr3_2:38003839-38003858 Msa0404880:intron 20.0%
!!! AAGAATCAGTTTGTTTTTAA+GGG + chr3_2:38004115-38004134 None:intergenic 20.0%
!!! AAAGAATCAGTTTGTTTTTA+AGG + chr3_2:38004116-38004135 None:intergenic 20.0%
!! AAATTGCATTCATAGTAAAT+TGG - chr3_2:38004413-38004432 Msa0404880:intron 20.0%
!! CTTAATGAAAAGAACAAAAA+TGG + chr3_2:38004516-38004535 None:intergenic 20.0%
!!! TTTTTGTTCTTTTCATTAAG+TGG - chr3_2:38004516-38004535 Msa0404880:CDS 20.0%
!! AAAACTACATAATTATCTTG+TGG - chr3_2:38004687-38004706 Msa0404880:CDS 20.0%
!! AAACTACATAATTATCTTGT+GGG - chr3_2:38004688-38004707 Msa0404880:CDS 20.0%
!! AGACAAAACTTTATTGAATT+AGG - chr3_2:38004765-38004784 Msa0404880:five_prime_UTR 20.0%
! CATTGAGAATGAAAATTGAT+GGG + chr3_2:38000169-38000188 None:intergenic 25.0%
!! AGTTGAAGATAAGTTGAAAT+TGG - chr3_2:38000284-38000303 Msa0404880:intron 25.0%
!! GTTGAAGATAAGTTGAAATT+GGG - chr3_2:38000285-38000304 Msa0404880:intron 25.0%
!! TTTTCAAATTATTAGCGTGT+TGG + chr3_2:38000540-38000559 None:intergenic 25.0%
! TTCAGTGTAATTATAAGTGT+TGG - chr3_2:38000572-38000591 Msa0404880:CDS 25.0%
!!! TCTTTAAAGCTACCTATAAT+TGG + chr3_2:38000723-38000742 None:intergenic 25.0%
! TTTAAAGAGAAAAGGCAAAT+TGG - chr3_2:38000735-38000754 Msa0404880:CDS 25.0%
! TTAAAGAGAAAAGGCAAATT+GGG - chr3_2:38000736-38000755 Msa0404880:CDS 25.0%
!! GATTTTCTAATTTCTACTCA+AGG - chr3_2:38000801-38000820 Msa0404880:intron 25.0%
!! CTCTTATGGTAATTTTAGAT+AGG - chr3_2:38000853-38000872 Msa0404880:intron 25.0%
!!! CATTCAATACAAGTATTGAT+GGG - chr3_2:38000898-38000917 Msa0404880:intron 25.0%
!!! ATTCAATACAAGTATTGATG+GGG - chr3_2:38000899-38000918 Msa0404880:intron 25.0%
! TAGAAGAGTTTCTGAATTTA+CGG + chr3_2:38001060-38001079 None:intergenic 25.0%
! TAAAAACAACATCAATCAAC+AGG + chr3_2:38001356-38001375 None:intergenic 25.0%
! TACACAACAGATAATAATCA+TGG + chr3_2:38001608-38001627 None:intergenic 25.0%
! TGTTAGAGTTAATTAGAGTT+TGG - chr3_2:38001688-38001707 Msa0404880:intron 25.0%
! AGTTAATTAGAGTTTGGATT+GGG - chr3_2:38001694-38001713 Msa0404880:intron 25.0%
!! CTATTTTCTCAAACTACTAT+TGG - chr3_2:38001906-38001925 Msa0404880:intron 25.0%
! TGTACCATAATACTTTGTTA+TGG - chr3_2:38002035-38002054 Msa0404880:intron 25.0%
!! AGTACCATAACAAAGTATTA+TGG + chr3_2:38002042-38002061 None:intergenic 25.0%
! TAGGTATTTATAAAAAGGGA+TGG + chr3_2:38002339-38002358 None:intergenic 25.0%
! AGCAATATTCTAGATATTTC+CGG - chr3_2:38002460-38002479 Msa0404880:intron 25.0%
! TAAGACATTATTAACACTAC+CGG + chr3_2:38002482-38002501 None:intergenic 25.0%
! CATAAGCACTTGATATTTAA+TGG - chr3_2:38002745-38002764 Msa0404880:CDS 25.0%
! AATTAGTTGATTGTCAGATA+CGG - chr3_2:38002876-38002895 Msa0404880:intron 25.0%
! TCGGAGTTTAATTATAATCA+TGG - chr3_2:38002903-38002922 Msa0404880:intron 25.0%
! GAGTTTAATTATAATCATGG+AGG - chr3_2:38002906-38002925 Msa0404880:intron 25.0%
!! TGTTTTGTAGTGTATAAACT+CGG + chr3_2:38003059-38003078 None:intergenic 25.0%
! GCAAAATTAATAAACACTTG+AGG + chr3_2:38003371-38003390 None:intergenic 25.0%
! TTCTAATCATTAAACTCCTT+TGG + chr3_2:38003577-38003596 None:intergenic 25.0%
! GAGACTTAAATGTAATAAGA+GGG + chr3_2:38003798-38003817 None:intergenic 25.0%
! TGAGACTTAAATGTAATAAG+AGG + chr3_2:38003799-38003818 None:intergenic 25.0%
!!! ATATTTTTGGTATTCTCATG+GGG - chr3_2:38003840-38003859 Msa0404880:intron 25.0%
! GTGTTACAATTGTGTAATTT+CGG + chr3_2:38004023-38004042 None:intergenic 25.0%
! ACACAAGTATTATTATCTGA+AGG + chr3_2:38004087-38004106 None:intergenic 25.0%
!! AAACAAACTGATTCTTTGTT+AGG - chr3_2:38004119-38004138 Msa0404880:intron 25.0%
! ACTTTACAAATGATTTAGGA+GGG + chr3_2:38004369-38004388 None:intergenic 25.0%
! AACTTTACAAATGATTTAGG+AGG + chr3_2:38004370-38004389 None:intergenic 25.0%
!! TAATAAAGTGCTTATCTACA+AGG - chr3_2:38004483-38004502 Msa0404880:intron 25.0%
! TCACTATACATACAAGAATA+CGG + chr3_2:38004666-38004685 None:intergenic 25.0%
TATGCAATCTTGTGTAACAA+GGG + chr3_2:38000051-38000070 None:intergenic 30.0%
ATATGCAATCTTGTGTAACA+AGG + chr3_2:38000052-38000071 None:intergenic 30.0%
CCATTGAGAATGAAAATTGA+TGG + chr3_2:38000170-38000189 None:intergenic 30.0%
! CCATCAATTTTCATTCTCAA+TGG - chr3_2:38000167-38000186 Msa0404880:three_prime_UTR 30.0%
! CTTACTGGAACAATTTTCAA+TGG - chr3_2:38000367-38000386 Msa0404880:three_prime_UTR 30.0%
! TGGAACAATTTTCAATGGAA+TGG - chr3_2:38000372-38000391 Msa0404880:three_prime_UTR 30.0%
TATGTGCAATGCAACTTATA+AGG + chr3_2:38000424-38000443 None:intergenic 30.0%
! TAGAAATTCCTACCTTTTGA+TGG - chr3_2:38000651-38000670 Msa0404880:CDS 30.0%
! AGAAATTCCTACCTTTTGAT+GGG - chr3_2:38000652-38000671 Msa0404880:CDS 30.0%
CTTTCTCAGATACCAATTAT+AGG - chr3_2:38000708-38000727 Msa0404880:CDS 30.0%
!! TAGGTAGCTTTAAAGAGAAA+AGG - chr3_2:38000727-38000746 Msa0404880:CDS 30.0%
TCATCATCAATCTTCTCTTA+TGG - chr3_2:38000839-38000858 Msa0404880:intron 30.0%
!! GCATTCAATACAAGTATTGA+TGG - chr3_2:38000897-38000916 Msa0404880:intron 30.0%
!! TTCAATACAAGTATTGATGG+GGG - chr3_2:38000900-38000919 Msa0404880:intron 30.0%
!!! CTCTTTTTTAAGCTTGCTTT+CGG - chr3_2:38001032-38001051 Msa0404880:intron 30.0%
GTAAATTCAGAAACTCTTCT+AGG - chr3_2:38001059-38001078 Msa0404880:intron 30.0%
! GAAGGTAAAGCTTACATTTT+TGG - chr3_2:38001081-38001100 Msa0404880:intron 30.0%
TCATTTGCGGTTATTAATCA+AGG - chr3_2:38001112-38001131 Msa0404880:intron 30.0%
!! AAACGTTTGAATTGCTTTTC+AGG - chr3_2:38001503-38001522 Msa0404880:intron 30.0%
!! AACGTTTGAATTGCTTTTCA+GGG - chr3_2:38001504-38001523 Msa0404880:intron 30.0%
! CTTTACAAGTCCTTTTTGAA+CGG + chr3_2:38001552-38001571 None:intergenic 30.0%
TATTGAAAGTCTTACGAGAT+AGG - chr3_2:38001642-38001661 Msa0404880:CDS 30.0%
GAGTTAATTAGAGTTTGGAT+TGG - chr3_2:38001693-38001712 Msa0404880:intron 30.0%
! AAGTTTTCTTCTCTGTCTTA+AGG - chr3_2:38001810-38001829 Msa0404880:intron 30.0%
TAAACTACAGCCTCATTTAT+AGG - chr3_2:38002182-38002201 Msa0404880:intron 30.0%
AAACTACAGCCTCATTTATA+GGG - chr3_2:38002183-38002202 Msa0404880:intron 30.0%
!!! CGTGGTTTTGAATAGTAAAA+AGG + chr3_2:38002294-38002313 None:intergenic 30.0%
GTATTTATAAAAAGGGATGG+AGG + chr3_2:38002336-38002355 None:intergenic 30.0%
!! TACCTTTAAGGTGAATAAGT+GGG - chr3_2:38002357-38002376 Msa0404880:intron 30.0%
TGGAAGATTGCTTATATTTC+AGG - chr3_2:38002594-38002613 Msa0404880:intron 30.0%
GGAAGATTGCTTATATTTCA+GGG - chr3_2:38002595-38002614 Msa0404880:intron 30.0%
AGTAACAAATCTCAGTGTTA+TGG + chr3_2:38002673-38002692 None:intergenic 30.0%
TATCAAGTGCTTATGTTTCA+TGG + chr3_2:38002740-38002759 None:intergenic 30.0%
CATTAGCACTTGATACTTAA+TGG - chr3_2:38002771-38002790 Msa0404880:intron 30.0%
TACTACAAAAACCTGGAAAA+TGG + chr3_2:38002812-38002831 None:intergenic 30.0%
! TCCAGGTTTTTGTAGTATTT+AGG - chr3_2:38002815-38002834 Msa0404880:intron 30.0%
ACCTAAATACTACAAAAACC+TGG + chr3_2:38002819-38002838 None:intergenic 30.0%
ATTAGTTGATTGTCAGATAC+GGG - chr3_2:38002877-38002896 Msa0404880:intron 30.0%
!! TAAACTATTGTCGGTTTGTT+TGG - chr3_2:38002954-38002973 Msa0404880:intron 30.0%
!! AAACTATTGTCGGTTTGTTT+GGG - chr3_2:38002955-38002974 Msa0404880:intron 30.0%
GCAAAATCATTATCTTAAGC+AGG - chr3_2:38003208-38003227 Msa0404880:intron 30.0%
AGAAAAGTTGTACCTTTGTT+AGG + chr3_2:38003306-38003325 None:intergenic 30.0%
TGAATTATACCGATAGTACT+TGG - chr3_2:38003343-38003362 Msa0404880:CDS 30.0%
GTACAATAAAACTTCTACAC+AGG - chr3_2:38003434-38003453 Msa0404880:intron 30.0%
! ATTAAACTCCTTTGGAAACA+AGG + chr3_2:38003569-38003588 None:intergenic 30.0%
! AATTTGTTCTGTGAGAATCA+CGG - chr3_2:38003617-38003636 Msa0404880:CDS 30.0%
AATCTTACCAAGTACAACAA+AGG - chr3_2:38003651-38003670 Msa0404880:CDS 30.0%
ACAATAGTGATATTAGTGAG+AGG + chr3_2:38003729-38003748 None:intergenic 30.0%
AATAAGAGGGTTACTTACTT+TGG + chr3_2:38003785-38003804 None:intergenic 30.0%
!!! TATTTTTGGTATTCTCATGG+GGG - chr3_2:38003841-38003860 Msa0404880:intron 30.0%
! AATTGCACTTTTAGTCTATC+AGG + chr3_2:38004045-38004064 None:intergenic 30.0%
TTTGTTAGGTATCACTAAAC+TGG - chr3_2:38004133-38004152 Msa0404880:intron 30.0%
GAACAAGCTGAAGAATTTAA+AGG - chr3_2:38004204-38004223 Msa0404880:intron 30.0%
! TGAAGAATTTAAAGGTGCAT+TGG - chr3_2:38004212-38004231 Msa0404880:intron 30.0%
! GAAGAATTTAAAGGTGCATT+GGG - chr3_2:38004213-38004232 Msa0404880:intron 30.0%
TCGAAAATTAAGCCTGTTAT+TGG - chr3_2:38004282-38004301 Msa0404880:intron 30.0%
!! ATGTTTCAGAGTTTTTCAAC+TGG + chr3_2:38004312-38004331 None:intergenic 30.0%
!! AGTTGAAAAACTCTGAAACA+TGG - chr3_2:38004311-38004330 Msa0404880:intron 30.0%
TTTACAAATGATTTAGGAGG+GGG + chr3_2:38004367-38004386 None:intergenic 30.0%
CTTTACAAATGATTTAGGAG+GGG + chr3_2:38004368-38004387 None:intergenic 30.0%
ACATAATTATCTTGTGGGTT+AGG - chr3_2:38004693-38004712 Msa0404880:exon 30.0%
!! AAGTTTTGTCTGCATATCAT+TGG + chr3_2:38004756-38004775 None:intergenic 30.0%
AGTGATGAAGAAGTTGTATG+TGG + chr3_2:38000091-38000110 None:intergenic 35.0%
ATGGCTCTTCATATAAACAG+TGG - chr3_2:38000186-38000205 Msa0404880:three_prime_UTR 35.0%
!! AGTGGTTGTTTTACTGTGAT+GGG - chr3_2:38000204-38000223 Msa0404880:three_prime_UTR 35.0%
! GAAGATAAGTTGAAATTGGG+TGG - chr3_2:38000288-38000307 Msa0404880:intron 35.0%
!! GATTTGAAGGTGTCAACAAT+TGG - chr3_2:38000315-38000334 Msa0404880:intron 35.0%
! AAGGTGTCAACAATTGGAAT+TGG - chr3_2:38000321-38000340 Msa0404880:intron 35.0%
TACTATGTAGCTATGAAGCA+CGG - chr3_2:38000480-38000499 Msa0404880:three_prime_UTR 35.0%
AACTTCCTTATCCCATCAAA+AGG + chr3_2:38000666-38000685 None:intergenic 35.0%
! ATTCAGAAACTCTTCTAGGA+AGG - chr3_2:38001063-38001082 Msa0404880:intron 35.0%
!! TGCTTTTCAGGGTATATTGA+TGG - chr3_2:38001515-38001534 Msa0404880:intron 35.0%
CGTTCAAAAAGGACTTGTAA+AGG - chr3_2:38001550-38001569 Msa0404880:intron 35.0%
! GTTGGTGTTTCAAACTATAG+TGG - chr3_2:38001575-38001594 Msa0404880:intron 35.0%
TTACGAGATAGGATTCAGTT+AGG - chr3_2:38001653-38001672 Msa0404880:intron 35.0%
ATGCCTTATCTCAGTAAACT+GGG + chr3_2:38001838-38001857 None:intergenic 35.0%
AATGCCTTATCTCAGTAAAC+TGG + chr3_2:38001839-38001858 None:intergenic 35.0%
TCTCAAACTACTATTGGTGT+CGG - chr3_2:38001912-38001931 Msa0404880:intron 35.0%
! TTTACTTGGTTTGAAGCCAA+TGG + chr3_2:38002166-38002185 None:intergenic 35.0%
AAATGAGGCTGTAGTTTACT+TGG + chr3_2:38002180-38002199 None:intergenic 35.0%
! TCTTCACACCATTTTCTTCA+GGG + chr3_2:38002210-38002229 None:intergenic 35.0%
! TTCTTCACACCATTTTCTTC+AGG + chr3_2:38002211-38002230 None:intergenic 35.0%
AAGAAAACCTGTGATGAACT+TGG - chr3_2:38002226-38002245 Msa0404880:intron 35.0%
AGAAAACCTGTGATGAACTT+GGG - chr3_2:38002227-38002246 Msa0404880:intron 35.0%
CACTTATTCACCTTAAAGGT+AGG + chr3_2:38002358-38002377 None:intergenic 35.0%
!! CTACCTTTAAGGTGAATAAG+TGG - chr3_2:38002356-38002375 Msa0404880:intron 35.0%
!! ACCTTTAAGGTGAATAAGTG+GGG - chr3_2:38002358-38002377 Msa0404880:intron 35.0%
AGGGACTTATAATTAGAGAC+AGG - chr3_2:38002634-38002653 Msa0404880:CDS 35.0%
! TTGTTTGGGAGAGTTTTTGT+AGG - chr3_2:38002969-38002988 Msa0404880:intron 35.0%
! TGTTTGGGAGAGTTTTTGTA+GGG - chr3_2:38002970-38002989 Msa0404880:intron 35.0%
ATGGAGTTGGAATTCGTTAT+GGG + chr3_2:38003142-38003161 None:intergenic 35.0%
AATGGAGTTGGAATTCGTTA+TGG + chr3_2:38003143-38003162 None:intergenic 35.0%
ACAACTTTCATGAATGGAGT+TGG + chr3_2:38003155-38003174 None:intergenic 35.0%
GTATGCACAACTTTCATGAA+TGG + chr3_2:38003161-38003180 None:intergenic 35.0%
TACTCCAGAATTCCTAACAA+AGG - chr3_2:38003291-38003310 Msa0404880:intron 35.0%
TGTACCTTTGTTAGGAATTC+TGG + chr3_2:38003298-38003317 None:intergenic 35.0%
CTGAAGAAGATCACTGAAAT+AGG - chr3_2:38003405-38003424 Msa0404880:intron 35.0%
! TCTAATGCCTTTGTTGTACT+TGG + chr3_2:38003661-38003680 None:intergenic 35.0%
!! TACAACAAAGGCATTAGACA+TGG - chr3_2:38003663-38003682 Msa0404880:CDS 35.0%
AATTCGCTCAATTTGAACGT+GGG + chr3_2:38003757-38003776 None:intergenic 35.0%
TAATTCGCTCAATTTGAACG+TGG + chr3_2:38003758-38003777 None:intergenic 35.0%
TTGTAACAAGATGCATGCTT+AGG - chr3_2:38003966-38003985 Msa0404880:CDS 35.0%
TGTAACAAGATGCATGCTTA+GGG - chr3_2:38003967-38003986 Msa0404880:CDS 35.0%
! TAATTCCTGCATTTGAAACC+TGG - chr3_2:38003993-38004012 Msa0404880:CDS 35.0%
! AATTTAAAGGTGCATTGGGA+TGG - chr3_2:38004217-38004236 Msa0404880:intron 35.0%
ATGGAGATTGACTAATGAAG+AGG - chr3_2:38004236-38004255 Msa0404880:intron 35.0%
! ATTACCAATTTCAGTGTCGA+TGG - chr3_2:38004627-38004646 Msa0404880:CDS 35.0%
!! TTACCAATTTCAGTGTCGAT+GGG - chr3_2:38004628-38004647 Msa0404880:CDS 35.0%
!! AATTATCTTGTGGGTTAGGA+AGG - chr3_2:38004697-38004716 Msa0404880:exon 35.0%
!! CAGTGGTTGTTTTACTGTGA+TGG - chr3_2:38000203-38000222 Msa0404880:three_prime_UTR 40.0%
!! ATTGGGTGGTTCTGATTTGA+AGG - chr3_2:38000302-38000321 Msa0404880:intron 40.0%
CAACAATTGGAATTGGAGCT+TGG - chr3_2:38000328-38000347 Msa0404880:intron 40.0%
! TCCTACCTTTTGATGGGATA+AGG - chr3_2:38000658-38000677 Msa0404880:CDS 40.0%
TCCTTATCCCATCAAAAGGT+AGG + chr3_2:38000662-38000681 None:intergenic 40.0%
! AACTTCAGCTGTGTCGATAA+AGG + chr3_2:38000931-38000950 None:intergenic 40.0%
ATCGACACAGCTGAAGTTTA+TGG - chr3_2:38000933-38000952 Msa0404880:intron 40.0%
GCGACTTCAACTTCAACATT+TGG + chr3_2:38001202-38001221 None:intergenic 40.0%
! AGTCATTTCGAGTCGATCAA+GGG + chr3_2:38001290-38001309 None:intergenic 40.0%
! AAGTCATTTCGAGTCGATCA+AGG + chr3_2:38001291-38001310 None:intergenic 40.0%
TGGATCTGTATCAGCTTCAT+TGG - chr3_2:38001314-38001333 Msa0404880:intron 40.0%
!! AAGTAACGCGCTTGTTTTTC+AGG - chr3_2:38001398-38001417 Msa0404880:intron 40.0%
! TCAGGGTATATTGATGGTCT+AGG - chr3_2:38001521-38001540 Msa0404880:intron 40.0%
AAAGGACTTGTAAAGGCTGT+TGG - chr3_2:38001557-38001576 Msa0404880:intron 40.0%
! TTAGAGTTTGGATTGGGAGT+TGG - chr3_2:38001700-38001719 Msa0404880:intron 40.0%
GTTCCCAGTTTACTGAGATA+AGG - chr3_2:38001832-38001851 Msa0404880:intron 40.0%
GGTTCATAGATCATCTGTCT+TGG - chr3_2:38001971-38001990 Msa0404880:intron 40.0%
TATGAACAGCTCAAGAAGAG+AGG - chr3_2:38002136-38002155 Msa0404880:intron 40.0%
!! CAAGAAGAGAGGTATTCCAT+TGG - chr3_2:38002147-38002166 Msa0404880:intron 40.0%
TATAGGGTCCCTGAAGAAAA+TGG - chr3_2:38002199-38002218 Msa0404880:intron 40.0%
TGTAATCCCAAGTTCATCAC+AGG + chr3_2:38002236-38002255 None:intergenic 40.0%
GCATATTCACCAATAGCTCA+AGG - chr3_2:38002262-38002281 Msa0404880:intron 40.0%
AGGATTTCACCTTGAGCTAT+TGG + chr3_2:38002274-38002293 None:intergenic 40.0%
ACCCCACTTATTCACCTTAA+AGG + chr3_2:38002362-38002381 None:intergenic 40.0%
AATTAGTTATGCAGGGTCTG+AGG + chr3_2:38002399-38002418 None:intergenic 40.0%
GTGCTTATGTTTCATGGAAG+AGG + chr3_2:38002734-38002753 None:intergenic 40.0%
! CGATTGAGAATCCATTTTCC+AGG - chr3_2:38002798-38002817 Msa0404880:intron 40.0%
GATTGTCAGATACGGGAATT+CGG - chr3_2:38002884-38002903 Msa0404880:intron 40.0%
! GTTTGGGAGAGTTTTTGTAG+GGG - chr3_2:38002971-38002990 Msa0404880:intron 40.0%
GGAATTCGTTATGGGCATAT+GGG + chr3_2:38003134-38003153 None:intergenic 40.0%
TGGAATTCGTTATGGGCATA+TGG + chr3_2:38003135-38003154 None:intergenic 40.0%
TCTTAAGCAGGTGTTCTTAC+TGG - chr3_2:38003220-38003239 Msa0404880:intron 40.0%
GGAGTATAAATTCTACCTCG+AGG + chr3_2:38003277-38003296 None:intergenic 40.0%
CTTGAGGAACCAAGTACTAT+CGG + chr3_2:38003355-38003374 None:intergenic 40.0%
TTATATCGCCATGTGGTCAT+TGG - chr3_2:38003688-38003707 Msa0404880:CDS 40.0%
CAATTAAGCCAATGACCACA+TGG + chr3_2:38003699-38003718 None:intergenic 40.0%
ATTCGCTCAATTTGAACGTG+GGG + chr3_2:38003756-38003775 None:intergenic 40.0%
TGCAGCACATGCACTAATAA+TGG + chr3_2:38003887-38003906 None:intergenic 40.0%
ACAATCAAGTCCGTTGTCAT+TGG + chr3_2:38003950-38003969 None:intergenic 40.0%
TTGTGTAATTTCGGTTCTCC+AGG + chr3_2:38004014-38004033 None:intergenic 40.0%
TTAGGTATCACTAAACTGGC+TGG - chr3_2:38004137-38004156 Msa0404880:intron 40.0%
GGAAATGTTGTACCAATTCC+TGG - chr3_2:38004168-38004187 Msa0404880:intron 40.0%
TCAACTGGAAAGCCAATAAC+AGG + chr3_2:38004297-38004316 None:intergenic 40.0%
! CTTTTGCATTCGTGGTTGAA+AGG + chr3_2:38004812-38004831 None:intergenic 40.0%
TTGGAATTGGAGCTTGGTCT+TGG - chr3_2:38000334-38000353 Msa0404880:intron 45.0%
! TGGAATTGGAGCTTGGTCTT+GGG - chr3_2:38000335-38000354 Msa0404880:intron 45.0%
CTTGGGGTGATACTACTTAC+TGG - chr3_2:38000352-38000371 Msa0404880:intron 45.0%
! TACTCGGATTAGACGTATCC+TGG + chr3_2:38000609-38000628 None:intergenic 45.0%
TACGATGCACGAACACTACT+CGG + chr3_2:38000625-38000644 None:intergenic 45.0%
ACAGCTGAAGTTTATGGCTC+TGG - chr3_2:38000939-38000958 Msa0404880:intron 45.0%
CAGCTGAAGTTTATGGCTCT+GGG - chr3_2:38000940-38000959 Msa0404880:intron 45.0%
! AGCTGAAGTTTATGGCTCTG+GGG - chr3_2:38000941-38000960 Msa0404880:intron 45.0%
! TCGACTCGAAATGACTTCTG+TGG - chr3_2:38001294-38001313 Msa0404880:intron 45.0%
!!! TGTTTTTCAGGCCTGGAGTA+TGG - chr3_2:38001410-38001429 Msa0404880:intron 45.0%
!!! GTTTTTCAGGCCTGGAGTAT+GGG - chr3_2:38001411-38001430 Msa0404880:intron 45.0%
!!! TTTTTCAGGCCTGGAGTATG+GGG - chr3_2:38001412-38001431 Msa0404880:intron 45.0%
CTAGGTGATGCCGTTCAAAA+AGG - chr3_2:38001539-38001558 Msa0404880:intron 45.0%
CACCAACAAATCACTGACAC+CGG + chr3_2:38001952-38001971 None:intergenic 45.0%
CTTCAGGGACCCTATAAATG+AGG + chr3_2:38002195-38002214 None:intergenic 45.0%
! AGGTGAATAAGTGGGGTGTT+TGG - chr3_2:38002365-38002384 Msa0404880:intron 45.0%
! GGTGAATAAGTGGGGTGTTT+GGG - chr3_2:38002366-38002385 Msa0404880:intron 45.0%
! GTGAATAAGTGGGGTGTTTG+GGG - chr3_2:38002367-38002386 Msa0404880:intron 45.0%
TCAGTGATCTTCTTCAGCAG+TGG + chr3_2:38003402-38003421 None:intergenic 45.0%
!! TCATCCTGCCTTGTTTCCAA+AGG - chr3_2:38003558-38003577 Msa0404880:intron 45.0%
! AACTCCTTTGGAAACAAGGC+AGG + chr3_2:38003565-38003584 None:intergenic 45.0%
!! CATGGTGTTATATCGCCATG+TGG - chr3_2:38003681-38003700 Msa0404880:CDS 45.0%
GTATTCTCATGGGGGCAAAA+AGG - chr3_2:38003849-38003868 Msa0404880:intron 45.0%
GTTGTCATTGGCATTGTCGA+CGG + chr3_2:38003938-38003957 None:intergenic 45.0%
GTCGACAATGCCAATGACAA+CGG - chr3_2:38003937-38003956 Msa0404880:CDS 45.0%
GTTCTCCAGGTTTCAAATGC+AGG + chr3_2:38004001-38004020 None:intergenic 45.0%
!!! GCTGTTTTAGCACCAGGAAT+TGG + chr3_2:38004183-38004202 None:intergenic 45.0%
!!! TGTTCTGCTGTTTTAGCACC+AGG + chr3_2:38004189-38004208 None:intergenic 45.0%
TGACCCATCGACACTGAAAT+TGG + chr3_2:38004634-38004653 None:intergenic 45.0%
! GGAAGCAACTTTTGCATTCG+TGG + chr3_2:38004820-38004839 None:intergenic 45.0%
!!! TTATTATTTTTTTAGAAAAT+AGG + chr3_2:38000137-38000156 None:intergenic 5.0%
!! AGTAATAATAATAATAATAA+AGG - chr3_2:38002533-38002552 Msa0404880:intron 5.0%
!! GTAATAATAATAATAATAAA+GGG - chr3_2:38002534-38002553 Msa0404880:intron 5.0%
!! GGAATTGGAGCTTGGTCTTG+GGG - chr3_2:38000336-38000355 Msa0404880:intron 50.0%
! CCATGGTAGTGCAGCAAACT+TGG + chr3_2:38001227-38001246 None:intergenic 50.0%
!! CCAAGTTTGCTGCACTACCA+TGG - chr3_2:38001224-38001243 Msa0404880:intron 50.0%
GCTGCACTACCATGGAGATT+AGG - chr3_2:38001232-38001251 Msa0404880:intron 50.0%
CTTTCACGGCCTAATCTCCA+TGG + chr3_2:38001244-38001263 None:intergenic 50.0%
GCGCGCTTAGAACACTTTCA+CGG + chr3_2:38001258-38001277 None:intergenic 50.0%
CCTTCATTTCCCCATACTCC+AGG + chr3_2:38001424-38001443 None:intergenic 50.0%
CCTGGAGTATGGGGAAATGA+AGG - chr3_2:38001421-38001440 Msa0404880:intron 50.0%
CACAAGTGTTTGTGTCGCGT+CGG + chr3_2:38001871-38001890 None:intergenic 50.0%
! GTCCGGTGTCAGTGATTTGT+TGG - chr3_2:38001947-38001966 Msa0404880:intron 50.0%
!! CGGTGTCAGTGATTTGTTGG+TGG - chr3_2:38001950-38001969 Msa0404880:intron 50.0%
! TGGGAGAGTTTTTGTAGGGG+AGG - chr3_2:38002974-38002993 Msa0404880:intron 50.0%
! GGGAGAGTTTTTGTAGGGGA+GGG - chr3_2:38002975-38002994 Msa0404880:intron 50.0%
ACTCCACGAAATCCTCCATC+TGG - chr3_2:38003250-38003269 Msa0404880:intron 50.0%
CTCCACGAAATCCTCCATCT+GGG - chr3_2:38003251-38003270 Msa0404880:intron 50.0%
GCATTGTCGACGGTTCACAA+GGG + chr3_2:38003928-38003947 None:intergenic 50.0%
CTAAACTGGCTGGTAGCTCA+AGG - chr3_2:38004147-38004166 Msa0404880:intron 50.0%
GGTAGCTGAGCTACGAAGTT+TGG - chr3_2:38004257-38004276 Msa0404880:intron 50.0%
!!! ACGCGCTTGTTTTTCAGGCC+TGG - chr3_2:38001403-38001422 Msa0404880:intron 55.0%
TTTGTGTCGCGTCGGACACT+CGG + chr3_2:38001863-38001882 None:intergenic 55.0%
!! GTCGGTGTCATTGTCGTGTC+CGG - chr3_2:38001930-38001949 Msa0404880:intron 55.0%
ATTCTACCTCGAGGCCCAGA+TGG + chr3_2:38003268-38003287 None:intergenic 55.0%
GGCATTGTCGACGGTTCACA+AGG + chr3_2:38003929-38003948 None:intergenic 55.0%
! GTGTTGGCAGACACGACACC+AGG - chr3_2:38000588-38000607 Msa0404880:CDS 60.0%
GGCCCAGATGGAGGATTTCG+TGG + chr3_2:38003256-38003275 None:intergenic 60.0%
AATCCTCCATCTGGGCCTCG+AGG - chr3_2:38003259-38003278 Msa0404880:intron 60.0%
CTACCTCGAGGCCCAGATGG+AGG + chr3_2:38003265-38003284 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 38000037 38004860 38000037 ID=Msa0404880;Name=Msa0404880
chr3_2 mRNA 38000037 38004860 38000037 ID=Msa0404880-mRNA-1;Parent=Msa0404880;Name=Msa0404880-mRNA-1;_AED=0.09;_eAED=0.09;_QI=149|1|1|1|0.9|0.81|11|464|366
chr3_2 exon 38000037 38000292 38000037 ID=Msa0404880-mRNA-1:exon:7575;Parent=Msa0404880-mRNA-1
chr3_2 exon 38000363 38000756 38000363 ID=Msa0404880-mRNA-1:exon:7574;Parent=Msa0404880-mRNA-1
chr3_2 exon 38001442 38001504 38001442 ID=Msa0404880-mRNA-1:exon:7573;Parent=Msa0404880-mRNA-1
chr3_2 exon 38001585 38001667 38001585 ID=Msa0404880-mRNA-1:exon:7572;Parent=Msa0404880-mRNA-1
chr3_2 exon 38002614 38002781 38002614 ID=Msa0404880-mRNA-1:exon:7571;Parent=Msa0404880-mRNA-1
chr3_2 exon 38003301 38003372 38003301 ID=Msa0404880-mRNA-1:exon:7570;Parent=Msa0404880-mRNA-1
chr3_2 exon 38003455 38003477 38003455 ID=Msa0404880-mRNA-1:exon:7569;Parent=Msa0404880-mRNA-1
chr3_2 exon 38003562 38003726 38003562 ID=Msa0404880-mRNA-1:exon:7568;Parent=Msa0404880-mRNA-1
chr3_2 exon 38003813 38003853 38003813 ID=Msa0404880-mRNA-1:exon:7567;Parent=Msa0404880-mRNA-1
chr3_2 exon 38003935 38004026 38003935 ID=Msa0404880-mRNA-1:exon:7566;Parent=Msa0404880-mRNA-1
chr3_2 exon 38004504 38004860 38004504 ID=Msa0404880-mRNA-1:exon:7565;Parent=Msa0404880-mRNA-1
chr3_2 five_prime_UTR 38004712 38004860 38004712 ID=Msa0404880-mRNA-1:five_prime_utr;Parent=Msa0404880-mRNA-1
chr3_2 CDS 38004504 38004711 38004504 ID=Msa0404880-mRNA-1:cds;Parent=Msa0404880-mRNA-1
chr3_2 CDS 38003935 38004026 38003935 ID=Msa0404880-mRNA-1:cds;Parent=Msa0404880-mRNA-1
chr3_2 CDS 38003813 38003853 38003813 ID=Msa0404880-mRNA-1:cds;Parent=Msa0404880-mRNA-1
chr3_2 CDS 38003562 38003726 38003562 ID=Msa0404880-mRNA-1:cds;Parent=Msa0404880-mRNA-1
chr3_2 CDS 38003455 38003477 38003455 ID=Msa0404880-mRNA-1:cds;Parent=Msa0404880-mRNA-1
chr3_2 CDS 38003301 38003372 38003301 ID=Msa0404880-mRNA-1:cds;Parent=Msa0404880-mRNA-1
chr3_2 CDS 38002614 38002781 38002614 ID=Msa0404880-mRNA-1:cds;Parent=Msa0404880-mRNA-1
chr3_2 CDS 38001585 38001667 38001585 ID=Msa0404880-mRNA-1:cds;Parent=Msa0404880-mRNA-1
chr3_2 CDS 38001442 38001504 38001442 ID=Msa0404880-mRNA-1:cds;Parent=Msa0404880-mRNA-1
chr3_2 CDS 38000571 38000756 38000571 ID=Msa0404880-mRNA-1:cds;Parent=Msa0404880-mRNA-1
chr3_2 three_prime_UTR 38000363 38000570 38000363 ID=Msa0404880-mRNA-1:three_prime_utr;Parent=Msa0404880-mRNA-1
chr3_2 three_prime_UTR 38000037 38000292 38000037 ID=Msa0404880-mRNA-1:three_prime_utr;Parent=Msa0404880-mRNA-1
Gene Sequence

>Msa0404880

ATGGCTCTTCATATAAACAGTGGTTGTTTTACTGTGATGGGTCACTGTAGAGTTCAAAGAGTAAAAGCTGTTGCTTCAGAGAGTTCTGCTAATGTTACAGTTGAAGATAAGTTGAAATTGGGTGGTTCTGATTTGAAGGTGTCAACAATTGGAATTGGAGCTTGGTCTTGGGGTGATACTACTTACTGGAACAATTTTCAATGGAATGATAGGAATGAGAAAGCTGCTAGAGATGCATTCAATACAAGTATTGATGGGGGTCTAACCTTTATCGACACAGCTGAAGTTTATGGCTCTGGGCTTGCTTTCGGAGCCGTAAATTCAGAAACTCTTCTAGGAAGATTTATTAAAGAACGAAAACAAAAGGATCCAAATGTTGAAGTTGAAGTCGCGACCAAGTTTGCTGCACTACCATGGAGATTAGGCCGTGAAAGTGTTCTAAGCGCGCTTAAAGATTCCCTTGATCGACTCGAAATGACTTCTGTGGATCTGTATCAGCTTCATTGGCCTGGAGTATGGGGAAATGAAGGGTATATTGATGGTCTAGGTGATGCCGTTCAAAAAGGACTTGTAAAGGCTGTTGGTGTTTCAAACTATAGTGAAAAACGACTACGCGAAGCATATGAACAGCTCAAGAAGAGAGGTATTCCATTGGCTTCAAACCAAGTAAACTACAGCCTCATTTATAGGGTCCCTGAAGAAAATGGTGTGAAGAAAACCTGTGATGAACTTGGGATTACATTGATTGCATATTCACCAATAGCTCAAGGTGTTCTTACTGGAAAGTATACTCCACGAAATCCTCCATCTGGGCCTCGAGGTAGAATTTATACTCCAGAATTCCTAACAAAGCTTCAACCACTGCTGAAGAAGATCACTGAAATAGGAGACAAGTACAATAAAACTTCTACACAGGTATCACTAAACTGGCTGGTAGCTCAAGGAAATGTTGTACCAATTCCTGGTGCTAAAACAGCAGAACAAGCTGAAGAATTTAAAGGTGCATTGGGATGGAGATTGACTAATGAAGAGGTAGCTGAGCTACGAAGTTTGGCGTCGAAAATTAAGCCTGTTATTGGCTTTCCAGTTGAAAAACTCTGA

Protein sequence

>Msa0404880

MALHINSGCFTVMGHCRVQRVKAVASESSANVTVEDKLKLGGSDLKVSTIGIGAWSWGDTTYWNNFQWNDRNEKAARDAFNTSIDGGLTFIDTAEVYGSGLAFGAVNSETLLGRFIKERKQKDPNVEVEVATKFAALPWRLGRESVLSALKDSLDRLEMTSVDLYQLHWPGVWGNEGYIDGLGDAVQKGLVKAVGVSNYSEKRLREAYEQLKKRGIPLASNQVNYSLIYRVPEENGVKKTCDELGITLIAYSPIAQGVLTGKYTPRNPPSGPRGRIYTPEFLTKLQPLLKKITEIGDKYNKTSTQVSLNWLVAQGNVVPIPGAKTAEQAEEFKGALGWRLTNEEVAELRSLASKIKPVIGFPVEKL*