AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0546020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0546020 MtrunA17_Chr4g0027101 84.055 508 24 4 1 451 2 509 0.0 850
Msa0546020 MtrunA17_Chr2g0282181 38.983 236 139 1 10 240 21 256 2.68e-50 172
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0546020 AT5G22620.4 61.229 423 119 5 60 444 44 459 3.20e-179 509
Msa0546020 AT5G22620.3 61.229 423 119 5 60 444 44 459 3.20e-179 509
Msa0546020 AT5G22620.6 59.862 436 117 6 60 444 44 472 3.11e-177 504
Msa0546020 AT5G22620.1 54.157 445 137 8 60 444 44 481 2.52e-155 449
Msa0546020 AT5G22620.5 54.157 445 137 8 60 444 44 481 2.52e-155 449
Msa0546020 AT5G22620.2 54.157 445 137 8 60 444 44 481 2.52e-155 449
Msa0546020 AT3G50520.1 29.630 162 109 5 66 223 16 176 2.63e-11 63.9

Find 126 sgRNAs with CRISPR-Local

Find 360 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAGAGAATGTAGAGTTAT+TGG 0.166217 4_1:-37139215 Msa0546020:CDS
TCCTCAGTTGGTCTTGTAAT+AGG 0.238461 4_1:+37134207 None:intergenic
AAAAGCCTGGCAATCCCTTT+TGG 0.280013 4_1:-37134457 Msa0546020:CDS
ATGAATTCAGAACAGCATTA+TGG 0.285681 4_1:-37134491 Msa0546020:CDS
TCTTCTTTCATTTAGTCCTT+TGG 0.294396 4_1:-37138084 Msa0546020:intron
ACTCTCTTTGCCACTTTCAA+TGG 0.319254 4_1:+37139172 None:intergenic
CTGATTACGCCTCTTCCCTT+AGG 0.332020 4_1:+37134270 None:intergenic
AGAAAACCGCTGAAATCATT+TGG 0.339933 4_1:-37138052 Msa0546020:CDS
CAAAGAGAGTGGTGCTTGTT+AGG 0.341702 4_1:-37139159 Msa0546020:CDS
TCACATACGCTGAAAGATTT+CGG 0.343689 4_1:+37134095 None:intergenic
TCCCTCCAAGCAGGACGATA+TGG 0.349241 4_1:-37139477 Msa0546020:five_prime_UTR
TATATTTAAACAATCCAAAA+AGG 0.354844 4_1:-37134956 Msa0546020:intron
TGCTCACAATGCTGTTAATC+AGG 0.362385 4_1:-37137079 Msa0546020:CDS
GAAAACCGCTGAAATCATTT+GGG 0.370490 4_1:-37138051 Msa0546020:CDS
AGTCTCAGGCTGAGACTTCT+AGG 0.383341 4_1:-37139060 Msa0546020:CDS
AGGCTGAAATGGAGGAAAAC+TGG 0.383659 4_1:+37134536 None:intergenic
CATCGGATATTTCATCCAAA+AGG 0.385034 4_1:+37134442 None:intergenic
CCTCAGTTGGTCTTGTAATA+GGG 0.385522 4_1:+37134208 None:intergenic
CCTCTTCCCTTAGGGCCATC+GGG 0.388137 4_1:+37134279 None:intergenic
GAAGAGAATGTAGAGTTATT+GGG 0.390847 4_1:-37139214 Msa0546020:CDS
ATAGACAGACCTGGAGAAAC+AGG 0.394054 4_1:+37139009 None:intergenic
TGAATTCAGAACAGCATTAT+GGG 0.395369 4_1:-37134490 Msa0546020:CDS
GCCTCTTCCCTTAGGGCCAT+CGG 0.403434 4_1:+37134278 None:intergenic
ATGTACTCAGAGCAGTGTTC+AGG 0.406442 4_1:-37139242 Msa0546020:CDS
GCTCTTGTTGCCACAGCAAT+TGG 0.407190 4_1:-37137057 Msa0546020:intron
GAACATGCTTGGTGTTATAC+AGG 0.408528 4_1:-37135560 Msa0546020:intron
GAAGAGGGAAAAGCGAGATT+TGG 0.408985 4_1:-37137240 Msa0546020:CDS
TTCATCCAAAAGGGATTGCC+AGG 0.409965 4_1:+37134452 None:intergenic
CTAAGGGAAGAGGCGTAATC+AGG 0.416834 4_1:-37134269 Msa0546020:CDS
ACTCAGGAATAATTTGTTGT+TGG 0.422257 4_1:+37138021 None:intergenic
TTTAACCATCCAGGCTGAAA+TGG 0.424105 4_1:+37134525 None:intergenic
TGCGATTCACATAGGACTAA+TGG 0.424880 4_1:-37134379 Msa0546020:CDS
CATAAATTATACTGCACACT+TGG 0.431161 4_1:-37134244 Msa0546020:CDS
TGCAACTGTCACTGACTACT+TGG 0.432615 4_1:+37139378 None:intergenic
TTGAGTATGTCTTTGTAGAA+TGG 0.434150 4_1:+37139284 None:intergenic
ACAAGAGGCTGCAGATTGCT+TGG 0.435741 4_1:-37135040 Msa0546020:CDS
ACTTTGATGCCTGTTTCTCC+AGG 0.440476 4_1:-37139018 Msa0546020:intron
TGCTTCCATATCGTCCTGCT+TGG 0.441198 4_1:+37139472 None:intergenic
TTCCATATCGTCCTGCTTGG+AGG 0.442054 4_1:+37139475 None:intergenic
TACATCGAACGATGATGAAT+CGG 0.444206 4_1:+37139260 None:intergenic
AAGTGAGCTTACCTGGGATA+TGG 0.445305 4_1:+37135377 None:intergenic
AACAAGAAACTAGGTCTTGA+AGG 0.446462 4_1:+37134029 None:intergenic
CGACTTCCCCGATGGCCCTA+AGG 0.448276 4_1:-37134286 Msa0546020:CDS
TGATTACGCCTCTTCCCTTA+GGG 0.450519 4_1:+37134271 None:intergenic
GCCATTGCTCGGTCAAGTTA+AGG 0.452356 4_1:+37134349 None:intergenic
GTCTCAATAGAAGATTTGTT+AGG 0.456589 4_1:+37135408 None:intergenic
TAACTTGACCGAGCAATGGC+TGG 0.457774 4_1:-37134346 Msa0546020:CDS
CTTGTTTCCTCCATTGAAAG+TGG 0.458735 4_1:-37139182 Msa0546020:CDS
TACTAAGAAAGGTGAGTCTC+AGG 0.462085 4_1:-37139074 Msa0546020:CDS
GAATCATTTCATCTTGATGC+AGG 0.464848 4_1:-37134324 Msa0546020:CDS
GAATGGAAATGATGATCAAA+GGG 0.468568 4_1:+37139301 None:intergenic
TTCCTCCATTTCAGCCTGGA+TGG 0.476357 4_1:-37134530 Msa0546020:CDS
ATCGGATATTTCATCCAAAA+GGG 0.480025 4_1:+37134443 None:intergenic
TGTGCTTTAGGGTTTGTTGA+AGG 0.480624 4_1:-37137262 Msa0546020:intron
TAGGGTTTGTTGAAGGAAGA+GGG 0.481409 4_1:-37137255 Msa0546020:CDS
TCAACTTTATTTAACCATCC+AGG 0.481598 4_1:+37134516 None:intergenic
AGTTGTAAATGTATGATTTG+AGG 0.483632 4_1:-37134131 Msa0546020:three_prime_UTR
TTAGGCATGGGCAGAGTACA+TGG 0.485010 4_1:-37139141 Msa0546020:CDS
TTTGTTAGGACTGCTAATTA+CGG 0.487442 4_1:+37135422 None:intergenic
TTAGGGTTTGTTGAAGGAAG+AGG 0.489399 4_1:-37137256 Msa0546020:intron
ACAGCATTATGGGATCAATC+TGG 0.491217 4_1:-37134480 Msa0546020:CDS
ATACTGCACACTTGGGAAGA+TGG 0.493742 4_1:-37134236 Msa0546020:CDS
AATGCTGAAGGGAGGATTCA+AGG 0.496684 4_1:-37139118 Msa0546020:CDS
CAAGAGGCTGCAGATTGCTT+GGG 0.497705 4_1:-37135039 Msa0546020:CDS
CTCTTTGCCACTTTCAATGG+AGG 0.501348 4_1:+37139175 None:intergenic
AACTCTTCAACATCCTCAGT+TGG 0.510224 4_1:+37134195 None:intergenic
TTATCCTGTGAGAGAGTTGT+GGG 0.511210 4_1:-37137163 Msa0546020:CDS
TTCTAAACAACCAGGTTTGG+AGG 0.512778 4_1:-37136950 Msa0546020:intron
AGTACAAATCGATTTCCCTT+AGG 0.513537 4_1:+37137994 None:intergenic
CCCGATGGCCCTAAGGGAAG+AGG 0.514495 4_1:-37134279 Msa0546020:CDS
GTCTCCTGATCTAGATTCAT+CGG 0.516209 4_1:+37134425 None:intergenic
AGAATGGAAATGATGATCAA+AGG 0.520970 4_1:+37139300 None:intergenic
TGATAGCAGGTCTGTTCTTG+TGG 0.523560 4_1:-37137103 Msa0546020:CDS
TTGATATTCTCCCTCCAAGC+AGG 0.524945 4_1:-37139486 Msa0546020:five_prime_UTR
AAATCCTAGCTCATGATAGC+AGG 0.525513 4_1:-37137116 Msa0546020:CDS
TCCATATCGTCCTGCTTGGA+GGG 0.528645 4_1:+37139476 None:intergenic
CAAACTGAAACTTACTTGAA+AGG 0.530301 4_1:+37137971 None:intergenic
TACAAACGCAACAAGAAACT+AGG 0.532535 4_1:+37134020 None:intergenic
ACATCGAACGATGATGAATC+GGG 0.535001 4_1:+37139261 None:intergenic
GACTTCCCCGATGGCCCTAA+GGG 0.535234 4_1:-37134285 Msa0546020:CDS
GACAGTTGCACAGTAAGTAA+TGG 0.541525 4_1:-37139365 Msa0546020:exon
GGGATCGTGCTAGAAGCTGC+TGG 0.544671 4_1:-37137143 Msa0546020:CDS
GGGATCAATCTGGAAAAGCC+TGG 0.546375 4_1:-37134470 Msa0546020:CDS
ATATCCGATGAATCTAGATC+AGG 0.548576 4_1:-37134429 Msa0546020:CDS
AGAGTGGTGCTTGTTAGGCA+TGG 0.549142 4_1:-37139154 Msa0546020:CDS
GACAGCCATGACCATATCCC+AGG 0.549887 4_1:-37135388 Msa0546020:intron
CAGACCTGCTATCATGAGCT+AGG 0.555413 4_1:+37137112 None:intergenic
GAGTGGTGCTTGTTAGGCAT+GGG 0.556816 4_1:-37139153 Msa0546020:CDS
TATGTGTATAAGTGCTCGCT+TGG 0.558541 4_1:-37133921 Msa0546020:three_prime_UTR
TTATTCCTGAGTATGACCTA+AGG 0.560311 4_1:-37138010 Msa0546020:CDS
ACAAGAAACTAGGTCTTGAA+GGG 0.560320 4_1:+37134030 None:intergenic
TGTCATCCTGCGATTCACAT+AGG 0.563323 4_1:-37134387 Msa0546020:CDS
TATTCCTGAGTATGACCTAA+GGG 0.563674 4_1:-37138009 Msa0546020:CDS
GCTTACCTGGGATATGGTCA+TGG 0.564312 4_1:+37135383 None:intergenic
ATTAGTCCTATGTGAATCGC+AGG 0.564925 4_1:+37134381 None:intergenic
CAGAGTACATGGAATGCTGA+AGG 0.569870 4_1:-37139130 Msa0546020:CDS
AAATGATTCCAGCCATTGCT+CGG 0.571401 4_1:+37134338 None:intergenic
AGCGTCCTCGACTTCCCCGA+TGG 0.572360 4_1:-37134294 Msa0546020:CDS
ATTATCCTGTGAGAGAGTTG+TGG 0.574820 4_1:-37137164 Msa0546020:CDS
ACTTTACTTCAGAGCAATTG+TGG 0.577088 4_1:-37136913 Msa0546020:CDS
AGTTGGTCTTGTAATAGGGA+TGG 0.585922 4_1:+37134212 None:intergenic
GCAGGACGATATGGAAGCAA+GGG 0.587022 4_1:-37139468 Msa0546020:five_prime_UTR
AACCATCCAGGCTGAAATGG+AGG 0.587394 4_1:+37134528 None:intergenic
AGCAGGACGATATGGAAGCA+AGG 0.589019 4_1:-37139469 Msa0546020:five_prime_UTR
ATTTCCCTTAGGTCATACTC+AGG 0.591208 4_1:+37138005 None:intergenic
TAGGGCCATCGGGGAAGTCG+AGG 0.592788 4_1:+37134289 None:intergenic
ATAACACCAAGCATGTTCAA+TGG 0.594462 4_1:+37135565 None:intergenic
CGATCCCACAACTCTCTCAC+AGG 0.597116 4_1:+37137159 None:intergenic
AAAGGGAACATGTAAAGAAG+AGG 0.605020 4_1:+37139318 None:intergenic
ATTGAAAGTGGCAAAGAGAG+TGG 0.607739 4_1:-37139170 Msa0546020:CDS
GATCAACCATTGAACATGCT+TGG 0.608336 4_1:-37135571 Msa0546020:CDS
CTCTTCCCTTAGGGCCATCG+GGG 0.609582 4_1:+37134280 None:intergenic
AATCATTTCATCTTGATGCA+GGG 0.611035 4_1:-37134323 Msa0546020:CDS
ATAAATTATACTGCACACTT+GGG 0.614541 4_1:-37134243 Msa0546020:CDS
CCCTATTACAAGACCAACTG+AGG 0.616960 4_1:-37134208 Msa0546020:CDS
CGTCTAGAGCAAATATGTTG+TGG 0.617052 4_1:+37133896 None:intergenic
GCCTTAACTTGACCGAGCAA+TGG 0.620035 4_1:-37134350 Msa0546020:CDS
AAAACCGCTGAAATCATTTG+GGG 0.626544 4_1:-37138050 Msa0546020:CDS
AGATCCCCAAATGATTTCAG+CGG 0.632339 4_1:+37138046 None:intergenic
AGAGTACATGGAATGCTGAA+GGG 0.633308 4_1:-37139129 Msa0546020:CDS
CTATGTTGAGACGAAGCAGA+AGG 0.640264 4_1:-37134998 Msa0546020:CDS
TGCTTCGTCTCAACATAGCG+TGG 0.649383 4_1:+37135003 None:intergenic
TGTTGAGACGAAGCAGAAGG+AGG 0.653414 4_1:-37134995 Msa0546020:CDS
GAAACAGGTACCAATTGCTG+TGG 0.666188 4_1:+37137047 None:intergenic
CAAGAAACTAGGTCTTGAAG+GGG 0.670776 4_1:+37134031 None:intergenic
GTACATGGAATGCTGAAGGG+AGG 0.686892 4_1:-37139126 Msa0546020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCAATAAAATAATTTTACA+AGG + chr4_1:37135484-37135503 None:intergenic 10.0%
!! TTTCAATATGTATATATATA+AGG + chr4_1:37135613-37135632 None:intergenic 10.0%
!!! AACAATTTTTGTTAATATTT+GGG - chr4_1:37137577-37137596 Msa0546020:intron 10.0%
!!! AGTTTCTTTTATAGTTTTTA+TGG + chr4_1:37134858-37134877 None:intergenic 15.0%
!! AAATGAAGAAAATATAAGTA+TGG - chr4_1:37135957-37135976 Msa0546020:intron 15.0%
!!! TAATTTATTGCATACTTTTT+GGG + chr4_1:37137164-37137183 None:intergenic 15.0%
!!! ATAATTTATTGCATACTTTT+TGG + chr4_1:37137165-37137184 None:intergenic 15.0%
!!! GAACAATTTTTGTTAATATT+TGG - chr4_1:37137576-37137595 Msa0546020:intron 15.0%
!!! ACAATTTTTGTTAATATTTG+GGG - chr4_1:37137578-37137597 Msa0546020:intron 15.0%
!! TGTAACTAATATATTAACAT+AGG + chr4_1:37138089-37138108 None:intergenic 15.0%
!! TATATTTAAACAATCCAAAA+AGG - chr4_1:37138439-37138458 Msa0546020:intron 15.0%
!!! ATTTTGTTTGTATGTTTGTA+TGG + chr4_1:37133956-37133975 None:intergenic 20.0%
!! TAGAAGTTAAAAATGTTGTA+TGG - chr4_1:37134556-37134575 Msa0546020:intron 20.0%
!! TGATATATGATAGAACATTA+TGG - chr4_1:37134918-37134937 Msa0546020:intron 20.0%
!! TTTAATCACATGTTATTAGA+AGG + chr4_1:37135146-37135165 None:intergenic 20.0%
!! GTAAATAAAGACAAAAGTAA+TGG + chr4_1:37135530-37135549 None:intergenic 20.0%
!! CATAACTTAAATATAAACAC+AGG - chr4_1:37135549-37135568 Msa0546020:intron 20.0%
!! CTTATATTCAATAAGCTATT+AGG - chr4_1:37135582-37135601 Msa0546020:CDS 20.0%
!!! ACATCCATAGTTTTAAATTA+TGG + chr4_1:37136695-37136714 None:intergenic 20.0%
!!! TAATTTAAAACTATGGATGT+AGG - chr4_1:37136695-37136714 Msa0546020:intron 20.0%
!!! AATTTAAAACTATGGATGTA+GGG - chr4_1:37136696-37136715 Msa0546020:intron 20.0%
!! TGGCTAAAATGTATTATATA+AGG - chr4_1:37137000-37137019 Msa0546020:intron 20.0%
!!! TAAAAGTTTTATTTCAGATG+CGG - chr4_1:37137737-37137756 Msa0546020:intron 20.0%
!! GTTCAAGTATAAAGTTTAAT+AGG + chr4_1:37138260-37138279 None:intergenic 20.0%
!! ATAGTAGTGATTCATTAAAT+CGG + chr4_1:37138737-37138756 None:intergenic 20.0%
!! CTAAACAATAAACCTTTAAT+AGG + chr4_1:37138807-37138826 None:intergenic 20.0%
!!! GAAAGAGCATATAAAAATAA+CGG - chr4_1:37139447-37139466 Msa0546020:five_prime_UTR 20.0%
!! TTTTCTGTTCTTACTAAGAA+AGG - chr4_1:37134310-37134329 Msa0546020:CDS 25.0%
! AACATTTACATACAGATAGA+TGG + chr4_1:37134424-37134443 None:intergenic 25.0%
! AGCACATATAGTAGAAAATA+TGG - chr4_1:37134720-37134739 Msa0546020:intron 25.0%
! ACATATAGTAGAAAATATGG+TGG - chr4_1:37134723-37134742 Msa0546020:intron 25.0%
! CAGTATTCTTCATTGTTTAT+TGG - chr4_1:37135241-37135260 Msa0546020:intron 25.0%
! CATTATTCACTTCTATGATT+TGG - chr4_1:37135885-37135904 Msa0546020:intron 25.0%
! GAGTTGTAAAAATTTCACAT+AGG - chr4_1:37135921-37135940 Msa0546020:intron 25.0%
! ATCATCAAAATTTCCTTAGA+GGG + chr4_1:37136375-37136394 None:intergenic 25.0%
!!! AGGAAATTTTGATGATCTAA+AGG - chr4_1:37136379-37136398 Msa0546020:intron 25.0%
!!! AATTTTGATGATCTAAAGGT+TGG - chr4_1:37136383-37136402 Msa0546020:intron 25.0%
!! CAGACCATAATTTAAAACTA+TGG - chr4_1:37136688-37136707 Msa0546020:intron 25.0%
!! TATAATCTGAAGCTGTAAAA+GGG + chr4_1:37136736-37136755 None:intergenic 25.0%
!! TTATAATCTGAAGCTGTAAA+AGG + chr4_1:37136737-37136756 None:intergenic 25.0%
! GGATAAATAAAACAATCTAC+AGG + chr4_1:37136779-37136798 None:intergenic 25.0%
! GATATTTATTTCAGAAAGAG+GGG + chr4_1:37136800-37136819 None:intergenic 25.0%
! CGATATTTATTTCAGAAAGA+GGG + chr4_1:37136801-37136820 None:intergenic 25.0%
! AATAGTTCGACTCTATTTAA+AGG + chr4_1:37136863-37136882 None:intergenic 25.0%
! TGTATTATATAAGGTCATGT+AGG - chr4_1:37137009-37137028 Msa0546020:intron 25.0%
!!! TTGTTAATTTTGAAGCATCT+GGG + chr4_1:37137099-37137118 None:intergenic 25.0%
!!! TTTGTTAATTTTGAAGCATC+TGG + chr4_1:37137100-37137119 None:intergenic 25.0%
! AAGATGTATCTTAGAACTAT+TGG + chr4_1:37137205-37137224 None:intergenic 25.0%
! CTAAAAACATAATTCTCATC+TGG - chr4_1:37137241-37137260 Msa0546020:CDS 25.0%
! CTAAAAACATAATTCTCATC+TGG - chr4_1:37137241-37137260 Msa0546020:CDS 25.0%
!!! TTTTGGAATTGGTTTATTCA+CGG - chr4_1:37137703-37137722 Msa0546020:intron 25.0%
! ATCCATTTATCAGAAATAAG+TGG - chr4_1:37137863-37137882 Msa0546020:intron 25.0%
!!! TTCCACTTATTTCTGATAAA+TGG + chr4_1:37137868-37137887 None:intergenic 25.0%
!! CCACAATTTAATGATTTTAG+AGG + chr4_1:37138163-37138182 None:intergenic 25.0%
!!! CCTCTAAAATCATTAAATTG+TGG - chr4_1:37138160-37138179 Msa0546020:intron 25.0%
! CTAAAATCATTAAATTGTGG+CGG - chr4_1:37138163-37138182 Msa0546020:intron 25.0%
!!! TACTTGCAAGTTTTAAATTG+CGG + chr4_1:37138199-37138218 None:intergenic 25.0%
! TATACTTGAACTAGTGAATT+TGG - chr4_1:37138269-37138288 Msa0546020:intron 25.0%
! ATACTTGAACTAGTGAATTT+GGG - chr4_1:37138270-37138289 Msa0546020:intron 25.0%
!! AAACTGTTAGACATGATTTT+AGG - chr4_1:37138331-37138350 Msa0546020:intron 25.0%
!!! CTCACAAACTATTTGATTTT+AGG - chr4_1:37138515-37138534 Msa0546020:intron 25.0%
! ACATGAAATACTCGATTAAT+TGG + chr4_1:37138558-37138577 None:intergenic 25.0%
! TAATCGAGTATTTCATGTAT+AGG - chr4_1:37138560-37138579 Msa0546020:intron 25.0%
!! AAACTTTTCTCATTTATTGC+AGG - chr4_1:37138830-37138849 Msa0546020:intron 25.0%
! ATAAATTATACTGCACACTT+GGG - chr4_1:37139152-37139171 Msa0546020:CDS 25.0%
! AGTTGTAAATGTATGATTTG+AGG - chr4_1:37139264-37139283 Msa0546020:CDS 25.0%
!!! GGGTATATTTTAATCTTTGA+AGG + chr4_1:37139347-37139366 None:intergenic 25.0%
GAATGGAAATGATGATCAAA+GGG + chr4_1:37134097-37134116 None:intergenic 30.0%
AGAATGGAAATGATGATCAA+AGG + chr4_1:37134098-37134117 None:intergenic 30.0%
TTGAGTATGTCTTTGTAGAA+TGG + chr4_1:37134114-37134133 None:intergenic 30.0%
AGAAGAGAATGTAGAGTTAT+TGG - chr4_1:37134180-37134199 Msa0546020:exon 30.0%
GAAGAGAATGTAGAGTTATT+GGG - chr4_1:37134181-37134200 Msa0546020:exon 30.0%
CAAGAATAAGATAAGCGTAA+CGG - chr4_1:37134609-37134628 Msa0546020:intron 30.0%
! TAGAAAATATGGTGGAAACT+AGG - chr4_1:37134731-37134750 Msa0546020:intron 30.0%
! AGAAAATATGGTGGAAACTA+GGG - chr4_1:37134732-37134751 Msa0546020:intron 30.0%
ATTGTTCAGTTGTTATCTGT+TGG + chr4_1:37135121-37135140 None:intergenic 30.0%
ATTTGCAGAAAACAGTAGAT+CGG + chr4_1:37135171-37135190 None:intergenic 30.0%
CAATGAAGAATACTGAATGT+TGG + chr4_1:37135236-37135255 None:intergenic 30.0%
AAACACGAAATCAATGACAT+GGG + chr4_1:37135275-37135294 None:intergenic 30.0%
AAAACACGAAATCAATGACA+TGG + chr4_1:37135276-37135295 None:intergenic 30.0%
TCTTCTTTCATTTAGTCCTT+TGG - chr4_1:37135311-37135330 Msa0546020:intron 30.0%
!! ACTCAGGAATAATTTGTTGT+TGG + chr4_1:37135377-37135396 None:intergenic 30.0%
CAAACTGAAACTTACTTGAA+AGG + chr4_1:37135427-37135446 None:intergenic 30.0%
AATGGAAATTTGAACTCTCA+AGG + chr4_1:37135512-37135531 None:intergenic 30.0%
! TTACAGTGAAATAAGTGTTG+AGG + chr4_1:37135648-37135667 None:intergenic 30.0%
! TCTATGATTTGGATATGCAT+AGG - chr4_1:37135896-37135915 Msa0546020:intron 30.0%
! AATTTCACATAGGTTGACAA+TGG - chr4_1:37135931-37135950 Msa0546020:intron 30.0%
! ATTTCACATAGGTTGACAAT+GGG - chr4_1:37135932-37135951 Msa0546020:intron 30.0%
!! TGTTTTTGTTCTTGTGCTTT+AGG - chr4_1:37136121-37136140 Msa0546020:intron 30.0%
! GTTTTTGTTCTTGTGCTTTA+GGG - chr4_1:37136122-37136141 Msa0546020:intron 30.0%
GATCATCAAAATTTCCTTAG+AGG + chr4_1:37136376-37136395 None:intergenic 30.0%
TCGTAAGCACATAATTCAAA+TGG + chr4_1:37136417-37136436 None:intergenic 30.0%
TAAGCGATTAAGGCAAATAT+GGG + chr4_1:37136552-37136571 None:intergenic 30.0%
TTAAGCGATTAAGGCAAATA+TGG + chr4_1:37136553-37136572 None:intergenic 30.0%
ATACCTGATTTAAGCGATTA+AGG + chr4_1:37136562-37136581 None:intergenic 30.0%
AAGCTGTAAAAGGGATAATA+AGG + chr4_1:37136727-37136746 None:intergenic 30.0%
GCGATATTTATTTCAGAAAG+AGG + chr4_1:37136802-37136821 None:intergenic 30.0%
AATACAGAGGTAAGAAGAAA+TGG - chr4_1:37136980-37136999 Msa0546020:intron 30.0%
ATTATATAAGGTCATGTAGG+AGG - chr4_1:37137012-37137031 Msa0546020:intron 30.0%
ATGTATCTTAGAACTATTGG+TGG + chr4_1:37137202-37137221 None:intergenic 30.0%
TATGTAACTATCTGTGTGTT+TGG - chr4_1:37137300-37137319 Msa0546020:intron 30.0%
TTTAAAAGCTCAATTGTCCA+TGG + chr4_1:37137328-37137347 None:intergenic 30.0%
TTATTTACTTGTGAGTTGTG+AGG + chr4_1:37137456-37137475 None:intergenic 30.0%
AGAACTTTCACATTGCTAAT+TGG + chr4_1:37137532-37137551 None:intergenic 30.0%
ACGAACTACCTTATTATAAC+AGG - chr4_1:37137781-37137800 Msa0546020:intron 30.0%
ACTACCTTATTATAACAGGA+CGG - chr4_1:37137785-37137804 Msa0546020:intron 30.0%
GAGACTGTTATACATGAAAA+AGG + chr4_1:37137914-37137933 None:intergenic 30.0%
TTTGTTAGGACTGCTAATTA+CGG + chr4_1:37137976-37137995 None:intergenic 30.0%
! GTCTCAATAGAAGATTTGTT+AGG + chr4_1:37137990-37138009 None:intergenic 30.0%
! CATAGGAAATAGTAGTTTGT+CGG + chr4_1:37138072-37138091 None:intergenic 30.0%
ATTAGACTAGAAGAATAGTG+AGG + chr4_1:37138310-37138329 None:intergenic 30.0%
! CTGTAAGTTACTTACCTTTT+TGG + chr4_1:37138456-37138475 None:intergenic 30.0%
AAATTCTTATGACCATTGCT+TGG + chr4_1:37138597-37138616 None:intergenic 30.0%
ACCAATTGAAGAAATGTAGA+AGG - chr4_1:37138624-37138643 Msa0546020:intron 30.0%
TCCTTCTACATTTCTTCAAT+TGG + chr4_1:37138628-37138647 None:intergenic 30.0%
TTCTCTACTCTTCCTATTAA+AGG - chr4_1:37138792-37138811 Msa0546020:intron 30.0%
ATGAATTCAGAACAGCATTA+TGG - chr4_1:37138904-37138923 Msa0546020:intron 30.0%
TGAATTCAGAACAGCATTAT+GGG - chr4_1:37138905-37138924 Msa0546020:intron 30.0%
ATCGGATATTTCATCCAAAA+GGG + chr4_1:37138955-37138974 None:intergenic 30.0%
AATCATTTCATCTTGATGCA+GGG - chr4_1:37139072-37139091 Msa0546020:CDS 30.0%
CATAAATTATACTGCACACT+TGG - chr4_1:37139151-37139170 Msa0546020:CDS 30.0%
AAAGGGAACATGTAAAGAAG+AGG + chr4_1:37134080-37134099 None:intergenic 35.0%
TACATCGAACGATGATGAAT+CGG + chr4_1:37134138-37134157 None:intergenic 35.0%
TGTTGTATGGAATAGAGTGT+TGG - chr4_1:37134569-37134588 Msa0546020:intron 35.0%
ATGATGTTGTGATGAATGTG+TGG - chr4_1:37134637-37134656 Msa0546020:intron 35.0%
AAACTAGGGTTATGTGGTTT+GGG - chr4_1:37134746-37134765 Msa0546020:intron 35.0%
!! AGGATTAGTCAAATCACTAG+AGG - chr4_1:37134821-37134840 Msa0546020:intron 35.0%
AGAAAACCGCTGAAATCATT+TGG - chr4_1:37135343-37135362 Msa0546020:intron 35.0%
GAAAACCGCTGAAATCATTT+GGG - chr4_1:37135344-37135363 Msa0546020:intron 35.0%
AAAACCGCTGAAATCATTTG+GGG - chr4_1:37135345-37135364 Msa0546020:intron 35.0%
TTATTCCTGAGTATGACCTA+AGG - chr4_1:37135385-37135404 Msa0546020:intron 35.0%
TATTCCTGAGTATGACCTAA+GGG - chr4_1:37135386-37135405 Msa0546020:intron 35.0%
! AGTACAAATCGATTTCCCTT+AGG + chr4_1:37135404-37135423 None:intergenic 35.0%
TCACTAAAGCTTCGTAAACT+CGG - chr4_1:37135454-37135473 Msa0546020:CDS 35.0%
TTCACTGTAAGAATAGAACC+TGG - chr4_1:37135658-37135677 Msa0546020:intron 35.0%
TCACTGTAAGAATAGAACCT+GGG - chr4_1:37135659-37135678 Msa0546020:intron 35.0%
!! AGCAAGACTTAGGAAGTATT+TGG + chr4_1:37135861-37135880 None:intergenic 35.0%
ATAATGTGTGAGCAAGACTT+AGG + chr4_1:37135871-37135890 None:intergenic 35.0%
! ATGATTTGGATATGCATAGG+TGG - chr4_1:37135899-37135918 Msa0546020:intron 35.0%
GATCAAAAACCGTAAAGCAT+TGG + chr4_1:37135995-37136014 None:intergenic 35.0%
! TACGGTTTTTGATCAGAACT+TGG - chr4_1:37136001-37136020 Msa0546020:intron 35.0%
AAATAGTCCCTAAGAGAGAA+CGG + chr4_1:37136080-37136099 None:intergenic 35.0%
CTTAGGGACTATTTATGATG+TGG - chr4_1:37136086-37136105 Msa0546020:intron 35.0%
ACTTTACTTCAGAGCAATTG+TGG - chr4_1:37136482-37136501 Msa0546020:intron 35.0%
AAGCGATTAAGGCAAATATG+GGG + chr4_1:37136551-37136570 None:intergenic 35.0%
TTGCCTTAATCGCTTAAATC+AGG - chr4_1:37136556-37136575 Msa0546020:intron 35.0%
TCAGGTATAGATACCTTTAC+TGG - chr4_1:37136574-37136593 Msa0546020:intron 35.0%
CAGGTATAGATACCTTTACT+GGG - chr4_1:37136575-37136594 Msa0546020:intron 35.0%
! GCTTAACTATTTTCGCAATG+TGG - chr4_1:37136820-37136839 Msa0546020:intron 35.0%
! TATTTTCGCAATGTGGACAT+CGG - chr4_1:37136827-37136846 Msa0546020:intron 35.0%
ATCTACTCAAGGAAATACAG+AGG - chr4_1:37136967-37136986 Msa0546020:intron 35.0%
TCATAGTGTGGATAATGCAT+AGG + chr4_1:37137038-37137057 None:intergenic 35.0%
AGAAGCTTCATGTTAACACA+TGG - chr4_1:37137374-37137393 Msa0546020:intron 35.0%
TTCCAAAAGCTTACGTTGTT+GGG + chr4_1:37137691-37137710 None:intergenic 35.0%
ATTCCAAAAGCTTACGTTGT+TGG + chr4_1:37137692-37137711 None:intergenic 35.0%
!!! ACAACGTAAGCTTTTGGAAT+TGG - chr4_1:37137692-37137711 Msa0546020:intron 35.0%
AACACCGTCCTGTTATAATA+AGG + chr4_1:37137792-37137811 None:intergenic 35.0%
ATAACACCAAGCATGTTCAA+TGG + chr4_1:37137833-37137852 None:intergenic 35.0%
CACTACGAACATTTATACTG+CGG - chr4_1:37138107-37138126 Msa0546020:intron 35.0%
CATTTATACTGCGGTAAATG+TGG - chr4_1:37138116-37138135 Msa0546020:intron 35.0%
!! GACATGATTTTAGGTACAAG+AGG - chr4_1:37138340-37138359 Msa0546020:intron 35.0%
GAAATGTAGAAGGAAACATG+TGG - chr4_1:37138634-37138653 Msa0546020:intron 35.0%
ATAGGAAGAGTAGAGAAAAG+TGG + chr4_1:37138789-37138808 None:intergenic 35.0%
CATCGGATATTTCATCCAAA+AGG + chr4_1:37138956-37138975 None:intergenic 35.0%
ATATCCGATGAATCTAGATC+AGG - chr4_1:37138966-37138985 Msa0546020:intron 35.0%
GAATCATTTCATCTTGATGC+AGG - chr4_1:37139071-37139090 Msa0546020:CDS 35.0%
TCACATACGCTGAAAGATTT+CGG + chr4_1:37139303-37139322 None:intergenic 35.0%
GGAGAAAAACGAATGCATTT+AGG + chr4_1:37139326-37139345 None:intergenic 35.0%
ACAAGAAACTAGGTCTTGAA+GGG + chr4_1:37139368-37139387 None:intergenic 35.0%
AACAAGAAACTAGGTCTTGA+AGG + chr4_1:37139369-37139388 None:intergenic 35.0%
TACAAACGCAACAAGAAACT+AGG + chr4_1:37139378-37139397 None:intergenic 35.0%
GACAGTTGCACAGTAAGTAA+TGG - chr4_1:37134030-37134049 Msa0546020:three_prime_UTR 40.0%
ACATCGAACGATGATGAATC+GGG + chr4_1:37134137-37134156 None:intergenic 40.0%
CTTGTTTCCTCCATTGAAAG+TGG - chr4_1:37134213-37134232 Msa0546020:CDS 40.0%
!! ACTCTCTTTGCCACTTTCAA+TGG + chr4_1:37134226-37134245 None:intergenic 40.0%
ATTGAAAGTGGCAAAGAGAG+TGG - chr4_1:37134225-37134244 Msa0546020:CDS 40.0%
AGAGTACATGGAATGCTGAA+GGG - chr4_1:37134266-37134285 Msa0546020:CDS 40.0%
TACTAAGAAAGGTGAGTCTC+AGG - chr4_1:37134321-37134340 Msa0546020:CDS 40.0%
AATAGACAGATAGACAGACC+TGG + chr4_1:37134398-37134417 None:intergenic 40.0%
!! GTATGGAATAGAGTGTTGGA+TGG - chr4_1:37134573-37134592 Msa0546020:intron 40.0%
ATTAGAGAGAGAGAGAGAGT+TGG - chr4_1:37134694-37134713 Msa0546020:intron 40.0%
TTAGAGAGAGAGAGAGAGTT+GGG - chr4_1:37134695-37134714 Msa0546020:intron 40.0%
GAAACTAGGGTTATGTGGTT+TGG - chr4_1:37134745-37134764 Msa0546020:intron 40.0%
TACCTGTAGATGCTGTTGTA+AGG - chr4_1:37134782-37134801 Msa0546020:intron 40.0%
AAGGAGAGTAGATCAGATGA+AGG - chr4_1:37134801-37134820 Msa0546020:intron 40.0%
GGACATGTGTGAAGCTATTT+GGG + chr4_1:37135095-37135114 None:intergenic 40.0%
TGGACATGTGTGAAGCTATT+TGG + chr4_1:37135096-37135115 None:intergenic 40.0%
TCAGTTGTTATCTGTTGGCA+TGG + chr4_1:37135116-37135135 None:intergenic 40.0%
CTGCAAATGTACAATCTTGC+AGG - chr4_1:37135183-37135202 Msa0546020:intron 40.0%
CAAATGTACAATCTTGCAGG+AGG - chr4_1:37135186-37135205 Msa0546020:intron 40.0%
! GTTTTCTTTGATCGTGCCAA+AGG + chr4_1:37135330-37135349 None:intergenic 40.0%
AGATCCCCAAATGATTTCAG+CGG + chr4_1:37135352-37135371 None:intergenic 40.0%
ATTTCCCTTAGGTCATACTC+AGG + chr4_1:37135393-37135412 None:intergenic 40.0%
ACACAAGTGCTTATGTCATG+AGG - chr4_1:37135816-37135835 Msa0546020:intron 40.0%
!! GACTTAGGAAGTATTTGGAC+TGG + chr4_1:37135856-37135875 None:intergenic 40.0%
!! CCGTAAAGCATTGGATACAT+GGG + chr4_1:37135986-37136005 None:intergenic 40.0%
CCCATGTATCCAATGCTTTA+CGG - chr4_1:37135983-37136002 Msa0546020:intron 40.0%
!! ACCGTAAAGCATTGGATACA+TGG + chr4_1:37135987-37136006 None:intergenic 40.0%
!!! TTGGTGTCAGTTCATTTTCG+TGG - chr4_1:37136020-37136039 Msa0546020:intron 40.0%
AATAGTCCCTAAGAGAGAAC+GGG + chr4_1:37136079-37136098 None:intergenic 40.0%
!! TGTGCTTTAGGGTTTGTTGA+AGG - chr4_1:37136133-37136152 Msa0546020:intron 40.0%
!! TTAGGGTTTGTTGAAGGAAG+AGG - chr4_1:37136139-37136158 Msa0546020:intron 40.0%
!! TAGGGTTTGTTGAAGGAAGA+GGG - chr4_1:37136140-37136159 Msa0546020:intron 40.0%
! TTGGTGCAGCTTTTCATCAA+TGG - chr4_1:37136174-37136193 Msa0546020:intron 40.0%
ATTATCCTGTGAGAGAGTTG+TGG - chr4_1:37136231-37136250 Msa0546020:intron 40.0%
TTATCCTGTGAGAGAGTTGT+GGG - chr4_1:37136232-37136251 Msa0546020:intron 40.0%
AAATCCTAGCTCATGATAGC+AGG - chr4_1:37136279-37136298 Msa0546020:intron 40.0%
TGCTCACAATGCTGTTAATC+AGG - chr4_1:37136316-37136335 Msa0546020:intron 40.0%
ATTTCCTTAGAGGGAGAAAC+AGG + chr4_1:37136366-37136385 None:intergenic 40.0%
TCACTGCATTCTAAACAACC+AGG - chr4_1:37136437-37136456 Msa0546020:intron 40.0%
GCATTCTAAACAACCAGGTT+TGG - chr4_1:37136442-37136461 Msa0546020:intron 40.0%
TTCTAAACAACCAGGTTTGG+AGG - chr4_1:37136445-37136464 Msa0546020:intron 40.0%
GTATAGATACCTTTACTGGG+TGG - chr4_1:37136578-37136597 Msa0546020:intron 40.0%
AAAACTATGGATGTAGGGCT+TGG - chr4_1:37136701-37136720 Msa0546020:intron 40.0%
CGGATTGTACTTGTTTGCAA+CGG - chr4_1:37136944-37136963 Msa0546020:intron 40.0%
ATCCACACTATGAGCTTGAA+TGG - chr4_1:37137045-37137064 Msa0546020:intron 40.0%
! TATCTGTGTGTTTGGAACCA+TGG - chr4_1:37137308-37137327 Msa0546020:intron 40.0%
TACTTGTGAGTTGTGAGGAA+TGG + chr4_1:37137451-37137470 None:intergenic 40.0%
GATCAACCATTGAACATGCT+TGG - chr4_1:37137824-37137843 Msa0546020:intron 40.0%
!! GAACATGCTTGGTGTTATAC+AGG - chr4_1:37137835-37137854 Msa0546020:intron 40.0%
TAGCAAAAGTGAGCTTACCT+GGG + chr4_1:37138027-37138046 None:intergenic 40.0%
! ATAGTAGTTTGTCGGCATGA+TGG + chr4_1:37138064-37138083 None:intergenic 40.0%
TTAAATTGTGGCGGCAATTG+TGG - chr4_1:37138172-37138191 Msa0546020:intron 40.0%
GTGTGTTTGTATATGCCTTG+AGG - chr4_1:37138480-37138499 Msa0546020:intron 40.0%
GAATGATCTTGACCAAGCAA+TGG - chr4_1:37138582-37138601 Msa0546020:intron 40.0%
TTTAACCATCCAGGCTGAAA+TGG + chr4_1:37138873-37138892 None:intergenic 40.0%
ACAGCATTATGGGATCAATC+TGG - chr4_1:37138915-37138934 Msa0546020:intron 40.0%
GTCTCCTGATCTAGATTCAT+CGG + chr4_1:37138973-37138992 None:intergenic 40.0%
ATTAGTCCTATGTGAATCGC+AGG + chr4_1:37139017-37139036 None:intergenic 40.0%
TGCGATTCACATAGGACTAA+TGG - chr4_1:37139016-37139035 Msa0546020:intron 40.0%
AAATGATTCCAGCCATTGCT+CGG + chr4_1:37139060-37139079 None:intergenic 40.0%
!! AGTTGGTCTTGTAATAGGGA+TGG + chr4_1:37139186-37139205 None:intergenic 40.0%
!! CCTCAGTTGGTCTTGTAATA+GGG + chr4_1:37139190-37139209 None:intergenic 40.0%
!! TCCTCAGTTGGTCTTGTAAT+AGG + chr4_1:37139191-37139210 None:intergenic 40.0%
AACTCTTCAACATCCTCAGT+TGG + chr4_1:37139203-37139222 None:intergenic 40.0%
CAAGAAACTAGGTCTTGAAG+GGG + chr4_1:37139367-37139386 None:intergenic 40.0%
TATGTGTATAAGTGCTCGCT+TGG - chr4_1:37139474-37139493 Msa0546020:five_prime_UTR 40.0%
! CGTCTAGAGCAAATATGTTG+TGG + chr4_1:37139502-37139521 None:intergenic 40.0%
TTGATATTCTCCCTCCAAGC+AGG - chr4_1:37133909-37133928 Msa0546020:three_prime_UTR 45.0%
! TGCAACTGTCACTGACTACT+TGG + chr4_1:37134020-37134039 None:intergenic 45.0%
ATGTACTCAGAGCAGTGTTC+AGG - chr4_1:37134153-37134172 Msa0546020:three_prime_UTR 45.0%
!! CTCTTTGCCACTTTCAATGG+AGG + chr4_1:37134223-37134242 None:intergenic 45.0%
CAAAGAGAGTGGTGCTTGTT+AGG - chr4_1:37134236-37134255 Msa0546020:CDS 45.0%
CAGAGTACATGGAATGCTGA+AGG - chr4_1:37134265-37134284 Msa0546020:CDS 45.0%
AATGCTGAAGGGAGGATTCA+AGG - chr4_1:37134277-37134296 Msa0546020:CDS 45.0%
! ACTTTGATGCCTGTTTCTCC+AGG - chr4_1:37134377-37134396 Msa0546020:CDS 45.0%
ATAGACAGACCTGGAGAAAC+AGG + chr4_1:37134389-37134408 None:intergenic 45.0%
TAGAGAGAGAGAGAGAGTTG+GGG - chr4_1:37134696-37134715 Msa0546020:intron 45.0%
TGGTGGAAACTAGGGTTATG+TGG - chr4_1:37134740-37134759 Msa0546020:intron 45.0%
CTCCTTACAACAGCATCTAC+AGG + chr4_1:37134787-37134806 None:intergenic 45.0%
CTTATCCCACTAAGTGGGAT+CGG + chr4_1:37134963-37134982 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr4_1:37134968-37134987 None:intergenic 45.0%
ATAGTCCCTAAGAGAGAACG+GGG + chr4_1:37136078-37136097 None:intergenic 45.0%
GAAGAGGGAAAAGCGAGATT+TGG - chr4_1:37136155-37136174 Msa0546020:intron 45.0%
! TGCAGCTTTTCATCAATGGC+AGG - chr4_1:37136178-37136197 Msa0546020:intron 45.0%
! AGCTTTTCATCAATGGCAGG+TGG - chr4_1:37136181-37136200 Msa0546020:intron 45.0%
TGATAGCAGGTCTGTTCTTG+TGG - chr4_1:37136292-37136311 Msa0546020:intron 45.0%
GAAACAGGTACCAATTGCTG+TGG + chr4_1:37136351-37136370 None:intergenic 45.0%
AAGTAATCTGCCTCCAAACC+TGG + chr4_1:37136458-37136477 None:intergenic 45.0%
TCACACATTCCACCCAGTAA+AGG + chr4_1:37136590-37136609 None:intergenic 45.0%
GGGTGGAATGTGTGAAAATG+CGG - chr4_1:37136595-37136614 Msa0546020:intron 45.0%
!! CTGCAGCATAACGGTTTTAG+AGG + chr4_1:37136653-37136672 None:intergenic 45.0%
CAATTGTGGCTGCAGCATAA+CGG + chr4_1:37136662-37136681 None:intergenic 45.0%
ATGGTCTGCAATCGCAATTG+TGG + chr4_1:37136676-37136695 None:intergenic 45.0%
GAACTATTAATGCAGACGCC+TGG - chr4_1:37136875-37136894 Msa0546020:intron 45.0%
GAGGTAGAGAAGCAAGTAAG+CGG - chr4_1:37136924-37136943 Msa0546020:CDS 45.0%
GTTTGCAACGGATCTACTCA+AGG - chr4_1:37136956-37136975 Msa0546020:intron 45.0%
AGCCATTCAAGCTCATAGTG+TGG + chr4_1:37137050-37137069 None:intergenic 45.0%
CTTGAATGGCTCTTGCATGA+TGG - chr4_1:37137059-37137078 Msa0546020:CDS 45.0%
! GGGTACATACGTATCGATGT+CGG + chr4_1:37137144-37137163 None:intergenic 45.0%
AGGAATGGATCACAAGAAGC+AGG + chr4_1:37137436-37137455 None:intergenic 45.0%
! ATTTGGGGTGTGTCGTATCA+TGG - chr4_1:37137593-37137612 Msa0546020:intron 45.0%
TTTCCTGTCCATGTTGTGTC+TGG - chr4_1:37137625-37137644 Msa0546020:intron 45.0%
TTCCTGTCCATGTTGTGTCT+GGG - chr4_1:37137626-37137645 Msa0546020:intron 45.0%
TAAGAAGCCCAGACACAACA+TGG + chr4_1:37137636-37137655 None:intergenic 45.0%
ATGTTGTGTCTGGGCTTCTT+AGG - chr4_1:37137635-37137654 Msa0546020:intron 45.0%
! CACCCAACAACGTAAGCTTT+TGG - chr4_1:37137686-37137705 Msa0546020:intron 45.0%
CAGATGCGGTTCTTCATGTT+AGG - chr4_1:37137751-37137770 Msa0546020:intron 45.0%
AAGTGAGCTTACCTGGGATA+TGG + chr4_1:37138021-37138040 None:intergenic 45.0%
GTAGCAAAAGTGAGCTTACC+TGG + chr4_1:37138028-37138047 None:intergenic 45.0%
GGTAAATGTGGCCACAATTG+TGG - chr4_1:37138128-37138147 Msa0546020:intron 45.0%
GGTCTTTGCAACCACAATTG+TGG + chr4_1:37138142-37138161 None:intergenic 45.0%
CTATGTTGAGACGAAGCAGA+AGG - chr4_1:37138397-37138416 Msa0546020:intron 45.0%
GAGTGACAAATCATGCCTCA+AGG + chr4_1:37138498-37138517 None:intergenic 45.0%
AGGCTGAAATGGAGGAAAAC+TGG + chr4_1:37138862-37138881 None:intergenic 45.0%
! AGTTTTCCTCCATTTCAGCC+TGG - chr4_1:37138861-37138880 Msa0546020:intron 45.0%
! AAAAGCCTGGCAATCCCTTT+TGG - chr4_1:37138938-37138957 Msa0546020:intron 45.0%
TTCATCCAAAAGGGATTGCC+AGG + chr4_1:37138946-37138965 None:intergenic 45.0%
TGTCATCCTGCGATTCACAT+AGG - chr4_1:37139008-37139027 Msa0546020:intron 45.0%
TGATTACGCCTCTTCCCTTA+GGG + chr4_1:37139127-37139146 None:intergenic 45.0%
ATACTGCACACTTGGGAAGA+TGG - chr4_1:37139159-37139178 Msa0546020:CDS 45.0%
CCCTATTACAAGACCAACTG+AGG - chr4_1:37139187-37139206 Msa0546020:CDS 45.0%
TCCATATCGTCCTGCTTGGA+GGG + chr4_1:37133922-37133941 None:intergenic 50.0%
TTCCATATCGTCCTGCTTGG+AGG + chr4_1:37133923-37133942 None:intergenic 50.0%
TGCTTCCATATCGTCCTGCT+TGG + chr4_1:37133926-37133945 None:intergenic 50.0%
AGCAGGACGATATGGAAGCA+AGG - chr4_1:37133926-37133945 Msa0546020:three_prime_UTR 50.0%
GCAGGACGATATGGAAGCAA+GGG - chr4_1:37133927-37133946 Msa0546020:three_prime_UTR 50.0%
! AGAGTGGTGCTTGTTAGGCA+TGG - chr4_1:37134241-37134260 Msa0546020:CDS 50.0%
! GAGTGGTGCTTGTTAGGCAT+GGG - chr4_1:37134242-37134261 Msa0546020:CDS 50.0%
TTAGGCATGGGCAGAGTACA+TGG - chr4_1:37134254-37134273 Msa0546020:CDS 50.0%
GTACATGGAATGCTGAAGGG+AGG - chr4_1:37134269-37134288 Msa0546020:CDS 50.0%
AGTCTCAGGCTGAGACTTCT+AGG - chr4_1:37134335-37134354 Msa0546020:CDS 50.0%
CGATCCCACTTAGTGGGATA+AGG - chr4_1:37134961-37134980 Msa0546020:CDS 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr4_1:37134969-37134988 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr4_1:37134966-37134985 Msa0546020:CDS 50.0%
CTTAGTGGGATAAGGCTTGG+TGG - chr4_1:37134969-37134988 Msa0546020:CDS 50.0%
CCTCGATTCTGATCTAACCC+AGG + chr4_1:37135679-37135698 None:intergenic 50.0%
! CCTGGGTTAGATCAGAATCG+AGG - chr4_1:37135676-37135695 Msa0546020:intron 50.0%
CAGACCTGCTATCATGAGCT+AGG + chr4_1:37136286-37136305 None:intergenic 50.0%
GCTCTTGTTGCCACAGCAAT+TGG - chr4_1:37136338-37136357 Msa0546020:intron 50.0%
! GGTACCTGTTTCTCCCTCTA+AGG - chr4_1:37136359-37136378 Msa0546020:intron 50.0%
GCTTGATTTCACCCCAAGAC+TGG - chr4_1:37136514-37136533 Msa0546020:intron 50.0%
GATTTCACCCCAAGACTGGA+TGG - chr4_1:37136518-37136537 Msa0546020:intron 50.0%
!! CGCAATGTGGACATCGGTTT+AGG - chr4_1:37136833-37136852 Msa0546020:intron 50.0%
TCTACCTCCAGATTTCCCTC+CGG + chr4_1:37136912-37136931 None:intergenic 50.0%
! CAGGACGGTGTTCTTTTTGC+TGG - chr4_1:37137800-37137819 Msa0546020:intron 50.0%
GCTTACCTGGGATATGGTCA+TGG + chr4_1:37138015-37138034 None:intergenic 50.0%
ACAAGAGGCTGCAGATTGCT+TGG - chr4_1:37138355-37138374 Msa0546020:intron 50.0%
CAAGAGGCTGCAGATTGCTT+GGG - chr4_1:37138356-37138375 Msa0546020:intron 50.0%
TGCTTCGTCTCAACATAGCG+TGG + chr4_1:37138395-37138414 None:intergenic 50.0%
TGTTGAGACGAAGCAGAAGG+AGG - chr4_1:37138400-37138419 Msa0546020:intron 50.0%
TTCCTCCATTTCAGCCTGGA+TGG - chr4_1:37138865-37138884 Msa0546020:intron 50.0%
AACCATCCAGGCTGAAATGG+AGG + chr4_1:37138870-37138889 None:intergenic 50.0%
GGGATCAATCTGGAAAAGCC+TGG - chr4_1:37138925-37138944 Msa0546020:intron 50.0%
! GCCTTAACTTGACCGAGCAA+TGG - chr4_1:37139045-37139064 Msa0546020:CDS 50.0%
GCCATTGCTCGGTCAAGTTA+AGG + chr4_1:37139049-37139068 None:intergenic 50.0%
TAACTTGACCGAGCAATGGC+TGG - chr4_1:37139049-37139068 Msa0546020:CDS 50.0%
CTGATTACGCCTCTTCCCTT+AGG + chr4_1:37139128-37139147 None:intergenic 50.0%
! CTAAGGGAAGAGGCGTAATC+AGG - chr4_1:37139126-37139145 Msa0546020:CDS 50.0%
TCCCTCCAAGCAGGACGATA+TGG - chr4_1:37133918-37133937 Msa0546020:three_prime_UTR 55.0%
ACTAAGTGGGATCGGCTGCA+TGG + chr4_1:37134955-37134974 None:intergenic 55.0%
ATGCAGCCGATCCCACTTAG+TGG - chr4_1:37134954-37134973 Msa0546020:intron 55.0%
TGCAGCCGATCCCACTTAGT+GGG - chr4_1:37134955-37134974 Msa0546020:intron 55.0%
! CGGGGTGGAGCTCTAATCAA+TGG + chr4_1:37136060-37136079 None:intergenic 55.0%
CTCCACCCCGTTCTCTCTTA+GGG - chr4_1:37136070-37136089 Msa0546020:intron 55.0%
CGATCCCACAACTCTCTCAC+AGG + chr4_1:37136239-37136258 None:intergenic 55.0%
TTCACCCCAAGACTGGATGG+TGG - chr4_1:37136521-37136540 Msa0546020:intron 55.0%
AGAGCCACCATCCAGTCTTG+GGG + chr4_1:37136528-37136547 None:intergenic 55.0%
GAGAGCCACCATCCAGTCTT+GGG + chr4_1:37136529-37136548 None:intergenic 55.0%
AGCCCAGACACAACATGGAC+AGG + chr4_1:37137631-37137650 None:intergenic 55.0%
GACAGCCATGACCATATCCC+AGG - chr4_1:37138007-37138026 Msa0546020:CDS 55.0%
GCTCCACCCCGTTCTCTCTT+AGG - chr4_1:37136069-37136088 Msa0546020:intron 60.0%
GTCCCTAAGAGAGAACGGGG+TGG + chr4_1:37136075-37136094 None:intergenic 60.0%
GGGATCGTGCTAGAAGCTGC+TGG - chr4_1:37136252-37136271 Msa0546020:intron 60.0%
GGAGAGCCACCATCCAGTCT+TGG + chr4_1:37136530-37136549 None:intergenic 60.0%
ACGCCTGGTTCACCTGTTGC+CGG - chr4_1:37136890-37136909 Msa0546020:intron 60.0%
CTGGTTCACCTGTTGCCGGA+GGG - chr4_1:37136894-37136913 Msa0546020:intron 60.0%
CCAGATTTCCCTCCGGCAAC+AGG + chr4_1:37136905-37136924 None:intergenic 60.0%
CCTGTTGCCGGAGGGAAATC+TGG - chr4_1:37136902-37136921 Msa0546020:intron 60.0%
GTTGCCGGAGGGAAATCTGG+AGG - chr4_1:37136905-37136924 Msa0546020:intron 60.0%
GACTTCCCCGATGGCCCTAA+GGG - chr4_1:37139110-37139129 Msa0546020:CDS 60.0%
CTCTTCCCTTAGGGCCATCG+GGG + chr4_1:37139118-37139137 None:intergenic 60.0%
CCTCTTCCCTTAGGGCCATC+GGG + chr4_1:37139119-37139138 None:intergenic 60.0%
GCCTCTTCCCTTAGGGCCAT+CGG + chr4_1:37139120-37139139 None:intergenic 60.0%
CCTCCGGCAACAGGTGAACC+AGG + chr4_1:37136896-37136915 None:intergenic 65.0%
CCTGGTTCACCTGTTGCCGG+AGG - chr4_1:37136893-37136912 Msa0546020:intron 65.0%
AGCGTCCTCGACTTCCCCGA+TGG - chr4_1:37139101-37139120 Msa0546020:CDS 65.0%
TAGGGCCATCGGGGAAGTCG+AGG + chr4_1:37139109-37139128 None:intergenic 65.0%
CGACTTCCCCGATGGCCCTA+AGG - chr4_1:37139109-37139128 Msa0546020:CDS 65.0%
CCCGATGGCCCTAAGGGAAG+AGG - chr4_1:37139116-37139135 Msa0546020:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 37133893 37139524 37133893 ID=Msa0546020;Name=Msa0546020
chr4_1 mRNA 37133893 37139524 37133893 ID=Msa0546020-mRNA-1;Parent=Msa0546020;Name=Msa0546020-mRNA-1;_AED=0.13;_eAED=0.13;_QI=156|0.85|0.87|1|0.85|0.87|8|298|451
chr4_1 exon 37133893 37134565 37133893 ID=Msa0546020-mRNA-1:exon:9467;Parent=Msa0546020-mRNA-1
chr4_1 exon 37134957 37135064 37134957 ID=Msa0546020-mRNA-1:exon:9466;Parent=Msa0546020-mRNA-1
chr4_1 exon 37135389 37135487 37135389 ID=Msa0546020-mRNA-1:exon:9465;Parent=Msa0546020-mRNA-1
chr4_1 exon 37135561 37135614 37135561 ID=Msa0546020-mRNA-1:exon:9464;Parent=Msa0546020-mRNA-1
chr4_1 exon 37136912 37136958 37136912 ID=Msa0546020-mRNA-1:exon:9463;Parent=Msa0546020-mRNA-1
chr4_1 exon 37137058 37137274 37137058 ID=Msa0546020-mRNA-1:exon:9462;Parent=Msa0546020-mRNA-1
chr4_1 exon 37137986 37138091 37137986 ID=Msa0546020-mRNA-1:exon:9461;Parent=Msa0546020-mRNA-1
chr4_1 exon 37139019 37139524 37139019 ID=Msa0546020-mRNA-1:exon:9460;Parent=Msa0546020-mRNA-1
chr4_1 five_prime_UTR 37139369 37139524 37139369 ID=Msa0546020-mRNA-1:five_prime_utr;Parent=Msa0546020-mRNA-1
chr4_1 CDS 37139019 37139368 37139019 ID=Msa0546020-mRNA-1:cds;Parent=Msa0546020-mRNA-1
chr4_1 CDS 37137986 37138091 37137986 ID=Msa0546020-mRNA-1:cds;Parent=Msa0546020-mRNA-1
chr4_1 CDS 37137058 37137274 37137058 ID=Msa0546020-mRNA-1:cds;Parent=Msa0546020-mRNA-1
chr4_1 CDS 37136912 37136958 37136912 ID=Msa0546020-mRNA-1:cds;Parent=Msa0546020-mRNA-1
chr4_1 CDS 37135561 37135614 37135561 ID=Msa0546020-mRNA-1:cds;Parent=Msa0546020-mRNA-1
chr4_1 CDS 37135389 37135487 37135389 ID=Msa0546020-mRNA-1:cds;Parent=Msa0546020-mRNA-1
chr4_1 CDS 37134957 37135064 37134957 ID=Msa0546020-mRNA-1:cds;Parent=Msa0546020-mRNA-1
chr4_1 CDS 37134191 37134565 37134191 ID=Msa0546020-mRNA-1:cds;Parent=Msa0546020-mRNA-1
chr4_1 three_prime_UTR 37133893 37134190 37133893 ID=Msa0546020-mRNA-1:three_prime_utr;Parent=Msa0546020-mRNA-1
Gene Sequence

>Msa0546020

ATGGTTTTAGTAACAAGATCTTTTTGTTCCTCTTCTTTACATGTTCCCTTTGATCATCATTTCCATTCTACAAAGACATACTCAACCCGATTCATCATCGTTCGATGTACTCAGAGCAGTGTTCAGGAGATAGAAGAGAATGTAGAGTTATTGGGAAACTCAGTCTTGTTTCCTCCATTGAAAGTGGCAAAGAGAGTGGTGCTTGTTAGGCATGGGCAGAGTACATGGAATGCTGAAGGGAGGATTCAAGGTAGTTCTGATTTTTCTGTTCTTACTAAGAAAGGTGAGTCTCAGGCTGAGACTTCTAGGCAAATGCTTCTCGAAGACAACTTTGATGCCTGTTTCTCCAGTCCTTTGGCACGATCAAAGAAAACCGCTGAAATCATTTGGGGATCTCGCCAACAACAAATTATTCCTGAGTATGACCTAAGGGAAATCGATTTGTACTCCTTTCAAGGTTTGTTGAAGGAAGAGGGAAAAGCGAGATTTGGTGCAGCTTTTCATCAATGGCAGGTGGATGCTGTGAACTTCGTCATTGATGATCATTATCCTGTGAGAGAGTTGTGGGATCGTGCTAGAAGCTGCTGGACTAAAATCCTAGCTCATGATAGCAGGTCTGTTCTTGTGGTTGCTCACAATGCTGTTAATCAGGCTCTTGTTGCCACAGCAATTGGTTTGGAGGCAGATTACTTTAGAACTTTACTTCAGAGCAATTGTGGTGACGGTGTTCTTTTTGCTGGTGATCAACCATTGAACATGCTTGGTGTTATACAGTCTCAAAAATCTGCAGAGCTACTTCTTGATTTGAAAGTGAGTTCCGTAATTAGCAGTCCTAACAAATCTTCTATTGAGACAGCCATGACCATATCCCAGGTACAAGAGGCTGCAGATTGCTTGGGTGCTGACTGTGTGCCACGCTATGTTGAGACGAAGCAGAAGGAGGATCTTGATATTGAAACTATATTTAAACAATCCAAAAAGGATGTATCCAGTTTTCCTCCATTTCAGCCTGGATGGTTAAATAAAGTTGAAGATGAATTCAGAACAGCATTATGGGATCAATCTGGAAAAGCCTGGCAATCCCTTTTGGATGAAATATCCGATGAATCTAGATCAGGAGACATCGTCGTTACAGTTTGTCATCCTGCGATTCACATAGGACTAATGGCGCACTGCCTTAACTTGACCGAGCAATGGCTGGAATCATTTCATCTTGATGCAGGGAGCGTTAGCGTCCTCGACTTCCCCGATGGCCCTAAGGGAAGAGGCGTAATCAGGTGCATAAATTATACTGCACACTTGGGAAGATGGTCCATCCCTATTACAAGACCAACTGAGGATGTTGAAGAGTTTTAA

Protein sequence

>Msa0546020

MVLVTRSFCSSSLHVPFDHHFHSTKTYSTRFIIVRCTQSSVQEIEENVELLGNSVLFPPLKVAKRVVLVRHGQSTWNAEGRIQGSSDFSVLTKKGESQAETSRQMLLEDNFDACFSSPLARSKKTAEIIWGSRQQQIIPEYDLREIDLYSFQGLLKEEGKARFGAAFHQWQVDAVNFVIDDHYPVRELWDRARSCWTKILAHDSRSVLVVAHNAVNQALVATAIGLEADYFRTLLQSNCGDGVLFAGDQPLNMLGVIQSQKSAELLLDLKVSSVISSPNKSSIETAMTISQVQEAADCLGADCVPRYVETKQKEDLDIETIFKQSKKDVSSFPPFQPGWLNKVEDEFRTALWDQSGKAWQSLLDEISDESRSGDIVVTVCHPAIHIGLMAHCLNLTEQWLESFHLDAGSVSVLDFPDGPKGRGVIRCINYTAHLGRWSIPITRPTEDVEEF*