AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0550840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0550840 MtrunA17_Chr4g0035791 93.217 516 14 2 46 559 52 548 0.0 967
Msa0550840 MtrunA17_Chr4g0035811 90.467 514 27 2 46 559 85 576 0.0 939
Msa0550840 MtrunA17_Chr4g0035761 78.764 518 91 1 41 558 52 550 0.0 809
Msa0550840 MtrunA17_Chr4g0035741 69.434 530 136 3 34 559 43 550 0.0 729
Msa0550840 MtrunA17_Chr4g0035751 67.961 515 139 3 32 546 35 523 0.0 699
Msa0550840 MtrunA17_Chr5g0448591 25.098 510 300 18 65 541 83 543 4.38e-20 94.0
Msa0550840 MtrunA17_Chr2g0328761 24.304 395 244 9 98 445 36 422 1.08e-13 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0550840 AT2G21340.1 61.905 525 164 5 51 559 55 559 0.0 655
Msa0550840 AT2G21340.2 61.524 525 163 6 51 559 55 556 0.0 646
Msa0550840 AT4G39030.1 61.426 477 156 3 87 558 89 542 0.0 587
Msa0550840 AT2G38330.1 24.478 527 334 13 37 541 24 508 1.04e-20 95.9
Msa0550840 AT4G38380.5 23.936 564 350 19 12 537 11 533 1.50e-16 83.2

Find 149 sgRNAs with CRISPR-Local

Find 475 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTTCTCATTCTTGGAATT+TGG 0.106484 4_1:+46405492 Msa0550840:three_prime_UTR
GCATGGCCTTGTTTACTTAT+TGG 0.177183 4_1:+46401578 Msa0550840:CDS
AATTGAAGACTGCATAATTT+TGG 0.181236 4_1:+46405184 Msa0550840:exon
AGCTGTATTCGGGTTGCTTT+TGG 0.197977 4_1:+46403512 Msa0550840:CDS
AGCAAATATGTTCTCATTCT+TGG 0.200815 4_1:+46405485 Msa0550840:three_prime_UTR
TTTGAATGGTCTAGTATTAT+TGG 0.209178 4_1:+46404849 Msa0550840:CDS
CCCTCCAGGCCGACTGTTGC+AGG 0.218536 4_1:-46403751 None:intergenic
CTGGACCTGCTATTGGTCTT+TGG 0.222999 4_1:+46400003 Msa0550840:CDS
CTAACTATTGGAGCTGTATT+CGG 0.232506 4_1:+46403501 Msa0550840:CDS
GCCACTGGGGTATAGTTATT+TGG 0.233210 4_1:+46405414 Msa0550840:three_prime_UTR
ATCGATTGCTACTTCGAATA+TGG 0.233585 4_1:+46400231 Msa0550840:CDS
TGCTCTCCTCTATTTCTAAA+TGG 0.238561 4_1:-46405466 None:intergenic
GTCTTTCTAGCAGTGCAATT+AGG 0.245594 4_1:+46404447 Msa0550840:CDS
GCTGCTGCCAGTATTATAAA+TGG 0.247426 4_1:+46402165 Msa0550840:CDS
ATTTGTGACATTGATGTTAA+AGG 0.250101 4_1:+46402833 Msa0550840:CDS
AAGGAAATTGTATTGTTTAC+TGG 0.254805 4_1:+46399984 Msa0550840:CDS
CTTGGAATTTGGGTTCAAAA+TGG 0.256390 4_1:+46405503 Msa0550840:three_prime_UTR
CTAAGGTCTCTTCTAACTAT+TGG 0.258425 4_1:+46403489 Msa0550840:CDS
CTGTGCAGATATTTAAACTA+TGG 0.264751 4_1:+46402204 Msa0550840:CDS
TCGGAAACTGTGCGGGGAAA+TGG 0.271411 4_1:+46405333 Msa0550840:three_prime_UTR
TGTTCTCATTCTTGGAATTT+GGG 0.281954 4_1:+46405493 Msa0550840:three_prime_UTR
ACCAATTCCATTTATAATAC+TGG 0.285900 4_1:-46402172 None:intergenic
TGCTACTGCCCTTGCTAAAC+AGG 0.288099 4_1:+46400255 Msa0550840:CDS
TCAATTGAACTCGCTGCTTT+AGG 0.289940 4_1:+46400080 Msa0550840:CDS
TGTTAAGCATGTTACAAAAT+AGG 0.300501 4_1:+46405263 Msa0550840:three_prime_UTR
GCATAAATGATTGGGCAGTT+TGG 0.309238 4_1:-46403169 None:intergenic
TAGAAGAAACCTCGCTGATT+TGG 0.310022 4_1:-46399905 None:intergenic
TTGGGGACCCTTGAAGGCTT+TGG 0.310354 4_1:+46402143 Msa0550840:CDS
CGGAAACTGTGCGGGGAAAT+GGG 0.313766 4_1:+46405334 Msa0550840:three_prime_UTR
CATAAATGATTGGGCAGTTT+GGG 0.318301 4_1:-46403168 None:intergenic
ATGGGATCGCTGGGGCTGCA+TGG 0.325681 4_1:+46402223 Msa0550840:CDS
TCTTTCTAGCAGTGCAATTA+GGG 0.328009 4_1:+46404448 Msa0550840:CDS
CTCATTGATACTGCTGTTGT+TGG 0.336581 4_1:+46400047 Msa0550840:CDS
AACTGGTTGAGCAGAGTATA+TGG 0.336997 4_1:+46399952 Msa0550840:CDS
TTGCACTGCTAGAAAGACTA+TGG 0.337537 4_1:-46404442 None:intergenic
TTGTTTACTGGACCTGCTAT+TGG 0.337810 4_1:+46399996 Msa0550840:CDS
GTCTTGGTATGAAAGATTCT+TGG 0.344370 4_1:+46402124 Msa0550840:intron
TAACTATTGGAGCTGTATTC+GGG 0.354893 4_1:+46403502 Msa0550840:CDS
GTGATCAAGTGTGGTGCCAC+TGG 0.372752 4_1:+46405399 Msa0550840:three_prime_UTR
CAGATCCTATCCAGCAGATA+TGG 0.375163 4_1:+46404953 Msa0550840:intron
GACAGGCTCGGTCGCTTCTA+AGG 0.385164 4_1:+46403472 Msa0550840:intron
CGTCCGCCTCGTTGAGTTGT+GGG 0.386120 4_1:-46399081 None:intergenic
TGGGTTCAAAATGGCTTGTA+AGG 0.388067 4_1:+46405512 Msa0550840:three_prime_UTR
CGGCCTGGAGGGAACATTGC+TGG 0.395766 4_1:+46403762 Msa0550840:CDS
TCTTGGTATGAAAGATTCTT+GGG 0.396058 4_1:+46402125 Msa0550840:CDS
TTTCACTTGCTGGATTTCAA+TGG 0.400259 4_1:+46404993 Msa0550840:CDS
TGGGATCGCTGGGGCTGCAT+GGG 0.408841 4_1:+46402224 Msa0550840:CDS
GGCAGCAGCCAAAGCCTTCA+AGG 0.419588 4_1:-46402151 None:intergenic
TCAACTCAGGCATAAATGAT+TGG 0.421244 4_1:-46403178 None:intergenic
AACATCAATGTCACAAATAC+AGG 0.423376 4_1:-46402828 None:intergenic
TTTATAAGTTTGTCAATGAC+TGG 0.429492 4_1:+46404817 Msa0550840:CDS
AGAAGAAGAAGTGAAGGAAC+TGG 0.429921 4_1:+46399935 Msa0550840:CDS
TTCACTTGCTGGATTTCAAT+GGG 0.432604 4_1:+46404994 Msa0550840:CDS
GTATGGAGTAAATCGGAGTT+TGG 0.433384 4_1:+46403202 Msa0550840:CDS
GCCAGTATTATAAATGGAAT+TGG 0.442168 4_1:+46402171 Msa0550840:CDS
TGGGAGATAGAAGGCGCAAA+AGG 0.447433 4_1:-46405116 None:intergenic
AGATTCTTGGGGACCCTTGA+AGG 0.447575 4_1:+46402137 Msa0550840:CDS
ACCTGATCAGATGGTCATCC+AGG 0.449016 4_1:+46403581 Msa0550840:CDS
GCTTTGCCATTTAGAAATAG+AGG 0.450678 4_1:+46405460 Msa0550840:three_prime_UTR
CACACCTGCAACAGTCGGCC+TGG 0.466186 4_1:+46403747 Msa0550840:CDS
TATTTAAACTATGGGATCGC+TGG 0.466318 4_1:+46402213 Msa0550840:CDS
TGTCGATACAATTCAGTGCT+TGG 0.467061 4_1:+46405288 Msa0550840:three_prime_UTR
GGTACTAAATGTACATTCTT+CGG 0.467102 4_1:-46401229 None:intergenic
TCCTGGATGACCATCTGATC+AGG 0.473180 4_1:-46403582 None:intergenic
TTTATGCCTGAGTTGATGTA+TGG 0.474513 4_1:+46403185 Msa0550840:CDS
AAGATATACGTTCAAGGCGG+TGG 0.474818 4_1:-46405375 None:intergenic
GCCTTGCAAACCATATCTGC+TGG 0.476879 4_1:-46404963 None:intergenic
TTTGCTCATGCAGGCTGGGC+GGG 0.477622 4_1:+46404786 Msa0550840:intron
AAATGCCATTGGGAGATAGA+AGG 0.478517 4_1:-46405125 None:intergenic
TGTGCAGATATTTAAACTAT+GGG 0.482960 4_1:+46402205 Msa0550840:CDS
AGTTGTATCGGAAACTGTGC+GGG 0.487415 4_1:+46405326 Msa0550840:three_prime_UTR
TCATCGATTGTGGATGGGAA+TGG 0.489279 4_1:-46405622 None:intergenic
TGGGGCTGCATGGGCTACAT+TGG 0.491626 4_1:+46402233 Msa0550840:CDS
AGTTGATGTATGGAGTAAAT+CGG 0.492680 4_1:+46403195 Msa0550840:CDS
TGCAGCTAATACTTATGTCC+AGG 0.497257 4_1:+46401252 Msa0550840:CDS
TTGTTGTAACATCTGTTACT+TGG 0.499431 4_1:+46403538 Msa0550840:CDS
CAACTCAGGCATAAATGATT+GGG 0.499704 4_1:-46403177 None:intergenic
TCATAAGAGCGAAGACATCT+TGG 0.499814 4_1:+46399051 Msa0550840:CDS
CTGCAGGTGCTGAGTTGTAT+CGG 0.500020 4_1:+46405314 Msa0550840:three_prime_UTR
TGATCAAGTGTGGTGCCACT+GGG 0.500320 4_1:+46405400 Msa0550840:three_prime_UTR
TTGGTGTTAGATTCGAGGGT+TGG 0.502304 4_1:+46401556 Msa0550840:intron
TTCCGAGTATAAAATGCCAT+TGG 0.504973 4_1:-46405136 None:intergenic
TTTCCTTCACCATTCCTTCA+GGG 0.508678 4_1:+46402772 Msa0550840:CDS
TCCGAGTATAAAATGCCATT+GGG 0.511889 4_1:-46405135 None:intergenic
TTCAAAATGGCTTGTAAGGT+AGG 0.514855 4_1:+46405516 Msa0550840:three_prime_UTR
GCGTCCGCCTCGTTGAGTTG+TGG 0.516069 4_1:-46399082 None:intergenic
GGAAACTGTGCGGGGAAATG+GGG 0.518399 4_1:+46405335 Msa0550840:three_prime_UTR
CTTCACCATTCCTTCAGGGA+AGG 0.518414 4_1:+46402776 Msa0550840:CDS
ATTTAAACTATGGGATCGCT+GGG 0.521866 4_1:+46402214 Msa0550840:CDS
TGAAAATCATCGATTGTGGA+TGG 0.522118 4_1:-46405628 None:intergenic
GCAAACCATATCTGCTGGAT+AGG 0.523619 4_1:-46404958 None:intergenic
TTGTGATTATGCAGATGCAT+AGG 0.528902 4_1:+46403692 Msa0550840:intron
CCTGCAACAGTCGGCCTGGA+GGG 0.530670 4_1:+46403751 Msa0550840:CDS
GAGTATATGGATTCAGATGA+AGG 0.533192 4_1:+46399965 Msa0550840:CDS
ATCACAAAGATATACGTTCA+AGG 0.539081 4_1:-46405381 None:intergenic
GATTGGGCAGTTTGGGAGAG+AGG 0.541089 4_1:-46403161 None:intergenic
GAGCAAAGCTCTAAATGAGA+AGG 0.541585 4_1:+46402737 Msa0550840:CDS
TTGCGCCTTCTATCTCCCAA+TGG 0.545810 4_1:+46405120 Msa0550840:CDS
TTAGGCGCAACAACGCTAGC+AGG 0.548010 4_1:+46401071 Msa0550840:CDS
TATGTTTGTGTAGGATAGGG+AGG 0.548718 4_1:+46400971 Msa0550840:intron
AAGCCACCATAAAAGTAGAA+AGG 0.550147 4_1:-46405441 None:intergenic
AAATTCCTTCCCTGAAGGAA+TGG 0.556149 4_1:-46402781 None:intergenic
GTTAGATTCGAGGGTTGGCA+TGG 0.557043 4_1:+46401561 Msa0550840:intron
TCCAGCAGATATGGTTTGCA+AGG 0.560688 4_1:+46404962 Msa0550840:CDS
GACAGAAATTCCTTCCCTGA+AGG 0.564886 4_1:-46402786 None:intergenic
GGGAGATAGAAGGCGCAAAA+GGG 0.565655 4_1:-46405115 None:intergenic
AAGAACAAACCTGTTTAGCA+AGG 0.565978 4_1:-46400264 None:intergenic
ATTCAGTGCTTGGAAACTGC+AGG 0.566478 4_1:+46405298 Msa0550840:three_prime_UTR
ATACCAGCAATGTTCCCTCC+AGG 0.568305 4_1:-46403765 None:intergenic
TATTGGGTTAGCATGTGGCT+CGG 0.569231 4_1:+46401025 Msa0550840:CDS
GCTATTGGTCTTTGGTTATG+CGG 0.571938 4_1:+46400011 Msa0550840:CDS
GAAACTGTGCGGGGAAATGG+GGG 0.573752 4_1:+46405336 Msa0550840:three_prime_UTR
GCAGCAGCCAAAGCCTTCAA+GGG 0.575285 4_1:-46402150 None:intergenic
GATATGGTTTGCAAGGCTGT+TGG 0.577198 4_1:+46404969 Msa0550840:CDS
GTCTAAAAGAAGCGATAATG+TGG 0.583346 4_1:+46399110 Msa0550840:CDS
CAACGATCCACTACTATGAT+CGG 0.583670 4_1:-46404416 None:intergenic
AGCAAAGCTCTAAATGAGAA+GGG 0.592366 4_1:+46402738 Msa0550840:CDS
TGGACATAAGTATTAGCTGC+AGG 0.592382 4_1:-46401250 None:intergenic
GAAAATCATCGATTGTGGAT+GGG 0.596079 4_1:-46405627 None:intergenic
CCGCTGAAAATCATCGATTG+TGG 0.597888 4_1:-46405632 None:intergenic
CTTCCCTGAAGGAATGGTGA+AGG 0.598270 4_1:-46402775 None:intergenic
TGCACTGCTAGAAAGACTAT+GGG 0.601081 4_1:-46404441 None:intergenic
ACCTGCAACAGTCGGCCTGG+AGG 0.603468 4_1:+46403750 Msa0550840:CDS
ATTTGCTCATGCAGGCTGGG+CGG 0.603806 4_1:+46404785 Msa0550840:intron
GATCGATTGCTCAAAGTGCA+AGG 0.606336 4_1:+46401600 Msa0550840:CDS
TCAGGCTCCGATCATAGTAG+TGG 0.609621 4_1:+46404409 Msa0550840:intron
GATACTGCTGTTGTTGGTCA+AGG 0.613645 4_1:+46400053 Msa0550840:CDS
CATAACCAAAGACCAATAGC+AGG 0.617530 4_1:-46400008 None:intergenic
AGAACAAACCTGTTTAGCAA+GGG 0.621535 4_1:-46400263 None:intergenic
AAGAGCGAAGACATCTTGGT+AGG 0.624067 4_1:+46399055 Msa0550840:CDS
AGTAAATCGGAGTTTGGCAA+AGG 0.624488 4_1:+46403208 Msa0550840:CDS
CTCAACGAGGCGGACGCAAG+AGG 0.626420 4_1:+46399088 Msa0550840:CDS
TACATGTTATGCGCAATATG+TGG 0.626684 4_1:+46403134 Msa0550840:CDS
TTTACTCCATACATCAACTC+AGG 0.632825 4_1:-46403191 None:intergenic
ATCGATCCAATAAGTAAACA+AGG 0.654105 4_1:-46401584 None:intergenic
TATATCTTTGTGATCAAGTG+TGG 0.669008 4_1:+46405390 Msa0550840:three_prime_UTR
CTTGGTATGAAAGATTCTTG+GGG 0.676112 4_1:+46402126 Msa0550840:CDS
CTGGTCACACCTGCAACAGT+CGG 0.690613 4_1:+46403742 Msa0550840:CDS
GAGTTGTATCGGAAACTGTG+CGG 0.703127 4_1:+46405325 Msa0550840:three_prime_UTR
TGATCAGATGGTCATCCAGG+AGG 0.712365 4_1:+46403584 Msa0550840:CDS
ACCAAATAACTATACCCCAG+TGG 0.721142 4_1:-46405415 None:intergenic
GTATCAATGAGACTCATCAA+CGG 0.734956 4_1:-46400035 None:intergenic
GTTGTATCGGAAACTGTGCG+GGG 0.735175 4_1:+46405327 Msa0550840:three_prime_UTR
GATCAAGTGTGGTGCCACTG+GGG 0.737199 4_1:+46405401 Msa0550840:three_prime_UTR
AGGTCTCCCACAACTCAACG+AGG 0.737806 4_1:+46399075 Msa0550840:CDS
TCTCCCACAACTCAACGAGG+CGG 0.749592 4_1:+46399078 Msa0550840:CDS
TTTAAACTATGGGATCGCTG+GGG 0.771769 4_1:+46402215 Msa0550840:CDS
TGGCTTGTAAGGTAGGAATG+TGG 0.773808 4_1:+46405523 Msa0550840:three_prime_UTR
ACAAAGATATACGTTCAAGG+CGG 0.792492 4_1:-46405378 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTAATTAAATTACTAATATT+CGG + chr4_1:46399493-46399512 Msa0550840:intron 10.0%
!! ATAATCTTAATTTAAATTGA+AGG - chr4_1:46401303-46401322 None:intergenic 10.0%
!! AGAAATCATAAAATAATTTA+TGG + chr4_1:46401345-46401364 Msa0550840:intron 10.0%
!! TAGCATATAATCATAAATTT+GGG - chr4_1:46399358-46399377 None:intergenic 15.0%
!! ATAGCATATAATCATAAATT+TGG - chr4_1:46399359-46399378 None:intergenic 15.0%
!! ATATATATCTCATATTTGAT+GGG - chr4_1:46399471-46399490 None:intergenic 15.0%
!! TTTCTATCCAATTAAAAAAT+GGG - chr4_1:46400294-46400313 None:intergenic 15.0%
!!! TTTTCTATCCAATTAAAAAA+TGG - chr4_1:46400295-46400314 None:intergenic 15.0%
!! TTTATTCTATATCATTAGTT+TGG - chr4_1:46400392-46400411 None:intergenic 15.0%
!!! TTTCTTGTTATAGTAAATAA+AGG + chr4_1:46401394-46401413 Msa0550840:intron 15.0%
!! TATATATTGAAATTGATCAA+AGG + chr4_1:46401491-46401510 Msa0550840:intron 15.0%
!!! TTTTTAGTTTATGTTCAATT+TGG + chr4_1:46401721-46401740 Msa0550840:intron 15.0%
!! TTAATTATTGGTATCATATA+TGG + chr4_1:46402644-46402663 Msa0550840:intron 15.0%
!!! TATTTTAGTACATTGAAAAT+AGG - chr4_1:46402675-46402694 None:intergenic 15.0%
!! ATATACATAAAACTACAATA+TGG - chr4_1:46403423-46403442 None:intergenic 15.0%
!! TAAAAGATATAAAATCACTA+TGG - chr4_1:46403962-46403981 None:intergenic 15.0%
!!! TGATACTTTAAGTTTTACTT+CGG + chr4_1:46399135-46399154 Msa0550840:CDS 20.0%
!!! ACTTTAAGATAAGTTTCATT+AGG + chr4_1:46399274-46399293 Msa0550840:intron 20.0%
!! CATATATATCTCATATTTGA+TGG - chr4_1:46399472-46399491 None:intergenic 20.0%
!! AAAGAATCAGAGAAAAATAT+GGG - chr4_1:46399631-46399650 None:intergenic 20.0%
!! AAAAGAATCAGAGAAAAATA+TGG - chr4_1:46399632-46399651 None:intergenic 20.0%
!!! TACTGTTTTTTGTGATTATT+TGG + chr4_1:46400189-46400208 Msa0550840:CDS 20.0%
!!! ACTGTTTTTTGTGATTATTT+GGG + chr4_1:46400190-46400209 Msa0550840:CDS 20.0%
!!! CTTTATTCCCATTTTTTAAT+TGG + chr4_1:46400284-46400303 Msa0550840:intron 20.0%
!! TAGAATAAAGATAATTCGTA+TGG + chr4_1:46400403-46400422 Msa0550840:intron 20.0%
!! AATAATGCCAAAAAATTTAC+TGG - chr4_1:46400878-46400897 None:intergenic 20.0%
!! CAAACATATTAACTAATCAA+AGG - chr4_1:46400959-46400978 None:intergenic 20.0%
!! ATTAGTTAATATGTTTGTGT+AGG + chr4_1:46400962-46400981 Msa0550840:intron 20.0%
!! ATTACTATTATCCCAAAAAA+GGG - chr4_1:46401128-46401147 None:intergenic 20.0%
!! AATTACTATTATCCCAAAAA+AGG - chr4_1:46401129-46401148 None:intergenic 20.0%
!!! TACTTTATTTAAAGAAGCAT+TGG - chr4_1:46401428-46401447 None:intergenic 20.0%
!! AACAGTTTAAAGAACAATTT+AGG - chr4_1:46401935-46401954 None:intergenic 20.0%
!! TCTCATTTAATTCATATTCT+TGG + chr4_1:46402081-46402100 Msa0550840:intron 20.0%
!! TACATTGTAAACAAGTAATT+AGG + chr4_1:46402288-46402307 Msa0550840:intron 20.0%
!! ACATTGTAAACAAGTAATTA+GGG + chr4_1:46402289-46402308 Msa0550840:intron 20.0%
!! TTGTATTAAGCTTACTAATT+AGG + chr4_1:46402527-46402546 Msa0550840:intron 20.0%
!! CACACATCATAATTAATTAT+TGG + chr4_1:46402632-46402651 Msa0550840:intron 20.0%
!! GAACTTTCAGTTATATTTAA+AGG - chr4_1:46402910-46402929 None:intergenic 20.0%
!!! TATATATTTTGCTACATCAA+TGG + chr4_1:46402960-46402979 Msa0550840:CDS 20.0%
!!! ATATATTTTGCTACATCAAT+GGG + chr4_1:46402961-46402980 Msa0550840:CDS 20.0%
!! TTAAAATATGTTTGTGAGTT+TGG - chr4_1:46403082-46403101 None:intergenic 20.0%
!!! TTTAACTCAACTCTTATTTT+AGG + chr4_1:46403097-46403116 Msa0550840:intron 20.0%
!! AAAACGATACTATATATATG+AGG - chr4_1:46403277-46403296 None:intergenic 20.0%
!!! AGTTGATTTTCATTTTATAG+AGG + chr4_1:46403316-46403335 Msa0550840:intron 20.0%
!! ATCTACAATATGAATTAGTA+AGG - chr4_1:46403395-46403414 None:intergenic 20.0%
!!! TTATTTTAGTGTTCTTATGT+TGG + chr4_1:46403820-46403839 Msa0550840:intron 20.0%
!!! CATTTTTATGCTAAAAATCT+AGG - chr4_1:46403889-46403908 None:intergenic 20.0%
!!! TGTTAACAACTTTATCTTTT+AGG - chr4_1:46404123-46404142 None:intergenic 20.0%
!! TTCAATTTGTCTATAATGAA+TGG + chr4_1:46404270-46404289 Msa0550840:intron 20.0%
!! ATAATGAATGGAAAAGAATA+TGG + chr4_1:46404282-46404301 Msa0550840:intron 20.0%
!! ATTAAATTGTCATGAATGTT+GGG - chr4_1:46404724-46404743 None:intergenic 20.0%
!! AATTAAATTGTCATGAATGT+TGG - chr4_1:46404725-46404744 None:intergenic 20.0%
! TTAAGATAAGTTTCATTAGG+AGG + chr4_1:46399277-46399296 Msa0550840:intron 25.0%
! TTTCTTTCTCTTTCTATTTC+TGG + chr4_1:46399599-46399618 Msa0550840:intron 25.0%
! AAGGAAATTGTATTGTTTAC+TGG + chr4_1:46399984-46400003 Msa0550840:CDS 25.0%
! TGAAATTGCACAATAATGTA+TGG + chr4_1:46400137-46400156 Msa0550840:intron 25.0%
! CTTTATATCAAAAGTCTTTC+TGG + chr4_1:46400563-46400582 Msa0550840:intron 25.0%
!! ATTTAAAGCAATGCATGATT+AGG + chr4_1:46400810-46400829 Msa0550840:intron 25.0%
!!! CAAAAGACCAGTAAATTTTT+TGG + chr4_1:46400868-46400887 Msa0550840:intron 25.0%
! ACATATTAACTAATCAAAGG+CGG - chr4_1:46400956-46400975 None:intergenic 25.0%
! TTAATATGTTTGTGTAGGAT+AGG + chr4_1:46400967-46400986 Msa0550840:intron 25.0%
! TAATATGTTTGTGTAGGATA+GGG + chr4_1:46400968-46400987 Msa0550840:intron 25.0%
!!! ATATCTGTCTTGCTTTTTAT+TGG + chr4_1:46401008-46401027 Msa0550840:CDS 25.0%
!!! TATCTGTCTTGCTTTTTATT+GGG + chr4_1:46401009-46401028 Msa0550840:CDS 25.0%
!!! CTTTTTTTCACAAGGTTATT+AGG + chr4_1:46401053-46401072 Msa0550840:CDS 25.0%
! GTAATTCACTAATGCATAAA+TGG + chr4_1:46401143-46401162 Msa0550840:intron 25.0%
! TCAGAAAGAAAAAAAAAACC+TGG - chr4_1:46401273-46401292 None:intergenic 25.0%
! TATTGAAATTGATCAAAGGA+AGG + chr4_1:46401495-46401514 Msa0550840:intron 25.0%
!! TTCAGTGTTACTAAATTAAG+CGG - chr4_1:46401530-46401549 None:intergenic 25.0%
!! TAGTAACACTGAATTTCTTT+TGG + chr4_1:46401537-46401556 Msa0550840:intron 25.0%
!! TAATAGTTGCTTGAAACTTT+TGG + chr4_1:46401759-46401778 Msa0550840:intron 25.0%
! ACCAATTCCATTTATAATAC+TGG - chr4_1:46402175-46402194 None:intergenic 25.0%
! TGTGCAGATATTTAAACTAT+GGG + chr4_1:46402205-46402224 Msa0550840:CDS 25.0%
! GGCACATAATATGTAAATAT+TGG + chr4_1:46402317-46402336 Msa0550840:intron 25.0%
! CAAAACACGTTAAAACATTT+CGG - chr4_1:46402398-46402417 None:intergenic 25.0%
!!! AATGTTTTAACGTGTTTTGA+AGG + chr4_1:46402399-46402418 Msa0550840:intron 25.0%
! ATTTGTGACATTGATGTTAA+AGG + chr4_1:46402833-46402852 Msa0550840:CDS 25.0%
! TACTATATATATGAGGTTGA+AGG - chr4_1:46403270-46403289 None:intergenic 25.0%
!!! ATCTTTCTTTTTGGTTTGAA+GGG + chr4_1:46403342-46403361 Msa0550840:intron 25.0%
!!! GTTGATTTTACAGGAAATAA+TGG - chr4_1:46404243-46404262 None:intergenic 25.0%
! TTCTTACAAACTTAATCTCT+AGG + chr4_1:46404318-46404337 Msa0550840:intron 25.0%
! AAGTACATATACATAAGAAG+CGG - chr4_1:46404377-46404396 None:intergenic 25.0%
!!! CTTAAAGGCATTATGTATAT+GGG - chr4_1:46404617-46404636 None:intergenic 25.0%
! TTAAATTGTCATGAATGTTG+GGG - chr4_1:46404723-46404742 None:intergenic 25.0%
! TTTATAAGTTTGTCAATGAC+TGG + chr4_1:46404817-46404836 Msa0550840:CDS 25.0%
! TTTGAATGGTCTAGTATTAT+TGG + chr4_1:46404849-46404868 Msa0550840:CDS 25.0%
! CATATTGTGTTTATTAGGTT+CGG + chr4_1:46405082-46405101 Msa0550840:intron 25.0%
!! AATTGAAGACTGCATAATTT+TGG + chr4_1:46405184-46405203 Msa0550840:exon 25.0%
! AATGTACCATGAACTAAAAA+TGG - chr4_1:46405214-46405233 None:intergenic 25.0%
! TGTTAAGCATGTTACAAAAT+AGG + chr4_1:46405263-46405282 Msa0550840:three_prime_UTR 25.0%
CACTTCGAAGAAAACAAAAA+TGG + chr4_1:46399656-46399675 Msa0550840:intron 30.0%
!! TAATGCATTGGTTTGTTGAA+TGG - chr4_1:46399794-46399813 None:intergenic 30.0%
TCGAGGATATAATAATGCAT+TGG - chr4_1:46399806-46399825 None:intergenic 30.0%
! GCACAATAATGTATGGATTT+TGG + chr4_1:46400144-46400163 Msa0550840:intron 30.0%
TAATCACAAAAAACAGTAGC+AGG - chr4_1:46400187-46400206 None:intergenic 30.0%
TATTGATGAATATGCGTGAA+TGG + chr4_1:46400315-46400334 Msa0550840:intron 30.0%
ATTGATGAATATGCGTGAAT+GGG + chr4_1:46400316-46400335 Msa0550840:intron 30.0%
! ATCAAAAGTCTTTCTGGTAA+TGG + chr4_1:46400569-46400588 Msa0550840:intron 30.0%
TTGTCATTGTTGGATGTATA+CGG - chr4_1:46400776-46400795 None:intergenic 30.0%
! TTTATGCACACACAACTTTT+AGG + chr4_1:46400920-46400939 Msa0550840:intron 30.0%
TTGAACAATTCATCAGTCAT+GGG - chr4_1:46401182-46401201 None:intergenic 30.0%
ATTGAACAATTCATCAGTCA+TGG - chr4_1:46401183-46401202 None:intergenic 30.0%
GGTACTAAATGTACATTCTT+CGG - chr4_1:46401232-46401251 None:intergenic 30.0%
AAGTAGACAACCTTTCAAAT+AGG + chr4_1:46401443-46401462 Msa0550840:intron 30.0%
AAAGCAGAATCCTATTTGAA+AGG - chr4_1:46401456-46401475 None:intergenic 30.0%
ATCGATCCAATAAGTAAACA+AGG - chr4_1:46401587-46401606 None:intergenic 30.0%
TATCTGAGAAAAGTCATTCA+TGG - chr4_1:46401800-46401819 None:intergenic 30.0%
GTATACTATTGAGTGACAAA+AGG - chr4_1:46401831-46401850 None:intergenic 30.0%
AGAACAATTTAGGCATTAAG+AGG - chr4_1:46401925-46401944 None:intergenic 30.0%
AGCACATTAAACTATTCTCA+GGG - chr4_1:46401976-46401995 None:intergenic 30.0%
AAGCACATTAAACTATTCTC+AGG - chr4_1:46401977-46401996 None:intergenic 30.0%
TCTTGGTATGAAAGATTCTT+GGG + chr4_1:46402125-46402144 Msa0550840:CDS 30.0%
GCCAGTATTATAAATGGAAT+TGG + chr4_1:46402171-46402190 Msa0550840:CDS 30.0%
CTGTGCAGATATTTAAACTA+TGG + chr4_1:46402204-46402223 Msa0550840:CDS 30.0%
! ATAAGTTTGTTCGCATACTT+GGG - chr4_1:46402262-46402281 None:intergenic 30.0%
! TATAAGTTTGTTCGCATACT+TGG - chr4_1:46402263-46402282 None:intergenic 30.0%
AAACAAGTAATTAGGGTTGT+AGG + chr4_1:46402296-46402315 Msa0550840:intron 30.0%
!!! ACGTGTTTTGAAGGTTTTTA+TGG + chr4_1:46402408-46402427 Msa0550840:intron 30.0%
!!! CGTGTTTTGAAGGTTTTTAT+GGG + chr4_1:46402409-46402428 Msa0550840:intron 30.0%
!!! GTGTTTTGAAGGTTTTTATG+GGG + chr4_1:46402410-46402429 Msa0550840:intron 30.0%
TTTGGATTATAGAATCCGAA+CGG - chr4_1:46402444-46402463 None:intergenic 30.0%
! AATATAGAAGCTTTAGCTCA+TGG - chr4_1:46402553-46402572 None:intergenic 30.0%
AACATCAATGTCACAAATAC+AGG - chr4_1:46402831-46402850 None:intergenic 30.0%
! AGTTGATGTATGGAGTAAAT+CGG + chr4_1:46403195-46403214 Msa0550840:CDS 30.0%
! TAGAGGATCATCTTTCTTTT+TGG + chr4_1:46403333-46403352 Msa0550840:intron 30.0%
!!! CATCTTTCTTTTTGGTTTGA+AGG + chr4_1:46403341-46403360 Msa0550840:intron 30.0%
ATGAATTAGTAAGGAGAACA+TGG - chr4_1:46403386-46403405 None:intergenic 30.0%
TGTCAAGATACTATAAACTC+AGG - chr4_1:46403456-46403475 None:intergenic 30.0%
TGAGTTTATAGTATCTTGAC+AGG + chr4_1:46403455-46403474 Msa0550840:intron 30.0%
TTGTTGTAACATCTGTTACT+TGG + chr4_1:46403538-46403557 Msa0550840:CDS 30.0%
TGATCAGGTGTAAAAATGTA+GGG - chr4_1:46403570-46403589 None:intergenic 30.0%
AAAAGAAGCCTTAATTCCAA+AGG - chr4_1:46403656-46403675 None:intergenic 30.0%
TCATGTTCGATTGGAATATT+AGG + chr4_1:46403790-46403809 Msa0550840:intron 30.0%
TTATGCTAAAAATCTAGGTC+AGG - chr4_1:46403884-46403903 None:intergenic 30.0%
!! ATTAGGATTTTCAAGAAGCT+TGG - chr4_1:46403923-46403942 None:intergenic 30.0%
AATCCTAATCTGTTTCACAT+AGG + chr4_1:46403934-46403953 Msa0550840:intron 30.0%
CTACTAAATAGTTAAGGGTT+AGG - chr4_1:46404073-46404092 None:intergenic 30.0%
CAGAGCTACTAAATAGTTAA+GGG - chr4_1:46404078-46404097 None:intergenic 30.0%
GATAAAGTTGTTAACAAGAC+AGG + chr4_1:46404127-46404146 Msa0550840:intron 30.0%
TTCCTGTAAAATCAACAGTT+TGG + chr4_1:46404247-46404266 Msa0550840:intron 30.0%
!!! AACCAAACTGTTGATTTTAC+AGG - chr4_1:46404252-46404271 None:intergenic 30.0%
GAGATTAAGTTTGTAAGAAG+TGG - chr4_1:46404317-46404336 None:intergenic 30.0%
TGTTTAAAGACTTCCTTACA+TGG + chr4_1:46404342-46404361 Msa0550840:intron 30.0%
TACATTGTCGTTACAACTAA+CGG - chr4_1:46404482-46404501 None:intergenic 30.0%
TGTAACGACAATGTAAGTAT+AGG + chr4_1:46404487-46404506 Msa0550840:intron 30.0%
! AGTCTCATATCGACTATAAA+AGG + chr4_1:46404562-46404581 Msa0550840:intron 30.0%
!! CCTTAAAGGCATTATGTATA+TGG - chr4_1:46404618-46404637 None:intergenic 30.0%
CCATATACATAATGCCTTTA+AGG + chr4_1:46404615-46404634 Msa0550840:intron 30.0%
!!! ACATAATGCCTTTAAGGTTT+TGG + chr4_1:46404621-46404640 Msa0550840:intron 30.0%
!! TATTGGTAACAACTTTTCCT+TGG + chr4_1:46404866-46404885 Msa0550840:intron 30.0%
TAGCACTTTCTATGAATTCT+AGG - chr4_1:46405031-46405050 None:intergenic 30.0%
AGGGACATATTGTGTTTATT+AGG + chr4_1:46405077-46405096 Msa0550840:intron 30.0%
!! TTATTAGGTTCGGTTTTCAT+CGG + chr4_1:46405092-46405111 Msa0550840:intron 30.0%
ATCACAAAGATATACGTTCA+AGG - chr4_1:46405384-46405403 None:intergenic 30.0%
TATATCTTTGTGATCAAGTG+TGG + chr4_1:46405390-46405409 Msa0550840:three_prime_UTR 30.0%
!! GGTAAACCTTTCTACTTTTA+TGG + chr4_1:46405435-46405454 Msa0550840:three_prime_UTR 30.0%
!! AAACCTTTCTACTTTTATGG+TGG + chr4_1:46405438-46405457 Msa0550840:three_prime_UTR 30.0%
AGCAAATATGTTCTCATTCT+TGG + chr4_1:46405485-46405504 Msa0550840:three_prime_UTR 30.0%
ATGTTCTCATTCTTGGAATT+TGG + chr4_1:46405492-46405511 Msa0550840:three_prime_UTR 30.0%
TGTTCTCATTCTTGGAATTT+GGG + chr4_1:46405493-46405512 Msa0550840:three_prime_UTR 30.0%
GTCTAAAAGAAGCGATAATG+TGG + chr4_1:46399110-46399129 Msa0550840:CDS 35.0%
TGAACTTGATTGCAAGTAAG+TGG + chr4_1:46399165-46399184 Msa0550840:intron 35.0%
TTCAACACCAATTCCATGTT+CGG + chr4_1:46399208-46399227 Msa0550840:intron 35.0%
! ATTTGATGGGTCATGATAAC+CGG - chr4_1:46399458-46399477 None:intergenic 35.0%
GGGAATGATAACTAAATGTC+GGG - chr4_1:46399552-46399571 None:intergenic 35.0%
CGGGAATGATAACTAAATGT+CGG - chr4_1:46399553-46399572 None:intergenic 35.0%
ACATTTAGTTATCATTCCCG+CGG + chr4_1:46399553-46399572 Msa0550840:intron 35.0%
AGAAAGAGAAAGAAAACGAG+TGG - chr4_1:46399594-46399613 None:intergenic 35.0%
!!! GCTGATTTGGTCTTTTTCTT+CGG - chr4_1:46399895-46399914 None:intergenic 35.0%
AGAAGAAGAAGAAGAAGTGA+AGG + chr4_1:46399929-46399948 Msa0550840:CDS 35.0%
GAGTATATGGATTCAGATGA+AGG + chr4_1:46399965-46399984 Msa0550840:CDS 35.0%
GTATCAATGAGACTCATCAA+CGG - chr4_1:46400038-46400057 None:intergenic 35.0%
!!! ATTTTGGTTTCTACATGAGC+AGG + chr4_1:46400160-46400179 Msa0550840:intron 35.0%
! ATCGATTGCTACTTCGAATA+TGG + chr4_1:46400231-46400250 Msa0550840:CDS 35.0%
AGAACAAACCTGTTTAGCAA+GGG - chr4_1:46400266-46400285 None:intergenic 35.0%
AAGAACAAACCTGTTTAGCA+AGG - chr4_1:46400267-46400286 None:intergenic 35.0%
AGCTTGTATTCAAATGTGAG+TGG + chr4_1:46400340-46400359 Msa0550840:intron 35.0%
TTCGTATGGCTAATGATCTT+AGG + chr4_1:46400417-46400436 Msa0550840:intron 35.0%
! TGGCTAATGATCTTAGGTTT+TGG + chr4_1:46400423-46400442 Msa0550840:intron 35.0%
! GGCTAATGATCTTAGGTTTT+GGG + chr4_1:46400424-46400443 Msa0550840:intron 35.0%
!!! TAATGATCTTAGGTTTTGGG+TGG + chr4_1:46400427-46400446 Msa0550840:intron 35.0%
TGGTCTTTGTAGTTCATGAT+TGG + chr4_1:46400463-46400482 Msa0550840:intron 35.0%
AAAAAATGTGAGTGTGACCT+TGG + chr4_1:46400637-46400656 Msa0550840:intron 35.0%
TGTCATTGTTGGATGTATAC+GGG - chr4_1:46400775-46400794 None:intergenic 35.0%
! TCCAACAATGACAAAAGCAT+AGG + chr4_1:46400782-46400801 Msa0550840:intron 35.0%
! TCCTATGCTTTTGTCATTGT+TGG - chr4_1:46400786-46400805 None:intergenic 35.0%
!!! CTTTTTATTGGGTTAGCATG+TGG + chr4_1:46401020-46401039 Msa0550840:CDS 35.0%
TGAACAATTCATCAGTCATG+GGG - chr4_1:46401181-46401200 None:intergenic 35.0%
! AGTGTTACTAAATTAAGCGG+AGG - chr4_1:46401527-46401546 None:intergenic 35.0%
!!! TTCTTTTGGTGTTAGATTCG+AGG + chr4_1:46401551-46401570 Msa0550840:intron 35.0%
!!! TCTTTTGGTGTTAGATTCGA+GGG + chr4_1:46401552-46401571 Msa0550840:intron 35.0%
! ATGACTTTTCTCAGATAGCA+AGG + chr4_1:46401803-46401822 Msa0550840:intron 35.0%
AAGCAATAGTTTACTCCTCA+GGG - chr4_1:46402023-46402042 None:intergenic 35.0%
AAAGCAATAGTTTACTCCTC+AGG - chr4_1:46402024-46402043 None:intergenic 35.0%
GTCTTGGTATGAAAGATTCT+TGG + chr4_1:46402124-46402143 Msa0550840:intron 35.0%
CTTGGTATGAAAGATTCTTG+GGG + chr4_1:46402126-46402145 Msa0550840:CDS 35.0%
TATTTAAACTATGGGATCGC+TGG + chr4_1:46402213-46402232 Msa0550840:CDS 35.0%
ATTTAAACTATGGGATCGCT+GGG + chr4_1:46402214-46402233 Msa0550840:CDS 35.0%
!!! CGGATTTTAGAATCCGAATA+GGG - chr4_1:46402378-46402397 None:intergenic 35.0%
!!! TCGGATTTTAGAATCCGAAT+AGG - chr4_1:46402379-46402398 None:intergenic 35.0%
!! AGCAAAGCTCTAAATGAGAA+GGG + chr4_1:46402738-46402757 Msa0550840:CDS 35.0%
! AACTGAAAGTTCTGATGTGT+AGG + chr4_1:46402918-46402937 Msa0550840:intron 35.0%
!!! CTTATTTTAGGTCATGCTTC+AGG + chr4_1:46403109-46403128 Msa0550840:intron 35.0%
TACATGTTATGCGCAATATG+TGG + chr4_1:46403134-46403153 Msa0550840:CDS 35.0%
CATAAATGATTGGGCAGTTT+GGG - chr4_1:46403171-46403190 None:intergenic 35.0%
CAACTCAGGCATAAATGATT+GGG - chr4_1:46403180-46403199 None:intergenic 35.0%
TCAACTCAGGCATAAATGAT+TGG - chr4_1:46403181-46403200 None:intergenic 35.0%
!! TTTATGCCTGAGTTGATGTA+TGG + chr4_1:46403185-46403204 Msa0550840:CDS 35.0%
TTTACTCCATACATCAACTC+AGG - chr4_1:46403194-46403213 None:intergenic 35.0%
TTATAGTATCTTGACAGGCT+CGG + chr4_1:46403460-46403479 Msa0550840:intron 35.0%
CTAAGGTCTCTTCTAACTAT+TGG + chr4_1:46403489-46403508 Msa0550840:CDS 35.0%
CTAACTATTGGAGCTGTATT+CGG + chr4_1:46403501-46403520 Msa0550840:CDS 35.0%
TAACTATTGGAGCTGTATTC+GGG + chr4_1:46403502-46403521 Msa0550840:CDS 35.0%
GATCAGGTGTAAAAATGTAG+GGG - chr4_1:46403569-46403588 None:intergenic 35.0%
CTGATCAGGTGTAAAAATGT+AGG - chr4_1:46403571-46403590 None:intergenic 35.0%
! CATTTTTACACCTGATCAGA+TGG + chr4_1:46403572-46403591 Msa0550840:CDS 35.0%
AAATTCAAGAACTAACCTCC+TGG - chr4_1:46403602-46403621 None:intergenic 35.0%
GAAAATTTCACTGTCTCCTT+TGG + chr4_1:46403637-46403656 Msa0550840:intron 35.0%
! GGAATTAAGGCTTCTTTTAG+TGG + chr4_1:46403658-46403677 Msa0550840:intron 35.0%
TTGTGATTATGCAGATGCAT+AGG + chr4_1:46403692-46403711 Msa0550840:intron 35.0%
!! TCCATTCTTTTTAGCACTAC+TGG + chr4_1:46403723-46403742 Msa0550840:CDS 35.0%
ACCAGTAGTGCTAAAAAGAA+TGG - chr4_1:46403727-46403746 None:intergenic 35.0%
!! TGTTGGTAGTGTTATTCAGT+TGG + chr4_1:46403837-46403856 Msa0550840:intron 35.0%
GAACCTATGTGAAACAGATT+AGG - chr4_1:46403940-46403959 None:intergenic 35.0%
TGAAATAGTCTTTGCGATTG+AGG + chr4_1:46403995-46404014 Msa0550840:intron 35.0%
AGGAGTAAGCCTACTTATTT+CGG + chr4_1:46404027-46404046 Msa0550840:intron 35.0%
CCTACTTATTTCGGTAGAAT+GGG + chr4_1:46404036-46404055 Msa0550840:intron 35.0%
GCAGAGCTACTAAATAGTTA+AGG - chr4_1:46404079-46404098 None:intergenic 35.0%
!! TCTTTTAGGAGAACTGATCT+TGG - chr4_1:46404109-46404128 None:intergenic 35.0%
ACATATACATAAGAAGCGGT+TGG - chr4_1:46404373-46404392 None:intergenic 35.0%
! TCTTTCTAGCAGTGCAATTA+GGG + chr4_1:46404448-46404467 Msa0550840:CDS 35.0%
!!! TTTTTGGGTTCAAATGTGAG+TGG + chr4_1:46404537-46404556 Msa0550840:intron 35.0%
!!! AATGCCTTTAAGGTTTTGGA+TGG + chr4_1:46404625-46404644 Msa0550840:intron 35.0%
ATCTCCATCCAAAACCTTAA+AGG - chr4_1:46404632-46404651 None:intergenic 35.0%
AAAAGAAGCAACATGCAACA+TGG - chr4_1:46404755-46404774 None:intergenic 35.0%
TTGTGTATATTTGCTCATGC+AGG + chr4_1:46404777-46404796 Msa0550840:intron 35.0%
!! ACTGGATGCTTTTGTTTGAA+TGG + chr4_1:46404835-46404854 Msa0550840:CDS 35.0%
! TTTCACTTGCTGGATTTCAA+TGG + chr4_1:46404993-46405012 Msa0550840:CDS 35.0%
! TTCACTTGCTGGATTTCAAT+GGG + chr4_1:46404994-46405013 Msa0550840:CDS 35.0%
TTTCGTGAACATATTCTGAC+AGG + chr4_1:46405057-46405076 Msa0550840:intron 35.0%
TTCGTGAACATATTCTGACA+GGG + chr4_1:46405058-46405077 Msa0550840:intron 35.0%
! TCCCAATGGCATTTTATACT+CGG + chr4_1:46405134-46405153 Msa0550840:CDS 35.0%
TCCGAGTATAAAATGCCATT+GGG - chr4_1:46405138-46405157 None:intergenic 35.0%
TTCCGAGTATAAAATGCCAT+TGG - chr4_1:46405139-46405158 None:intergenic 35.0%
ACAAAGATATACGTTCAAGG+CGG - chr4_1:46405381-46405400 None:intergenic 35.0%
AAGCCACCATAAAAGTAGAA+AGG - chr4_1:46405444-46405463 None:intergenic 35.0%
! GCTTTGCCATTTAGAAATAG+AGG + chr4_1:46405460-46405479 Msa0550840:three_prime_UTR 35.0%
!! TGCTCTCCTCTATTTCTAAA+TGG - chr4_1:46405469-46405488 None:intergenic 35.0%
! CTTGGAATTTGGGTTCAAAA+TGG + chr4_1:46405503-46405522 Msa0550840:three_prime_UTR 35.0%
! TTCAAAATGGCTTGTAAGGT+AGG + chr4_1:46405516-46405535 Msa0550840:three_prime_UTR 35.0%
! GAAAATCATCGATTGTGGAT+GGG - chr4_1:46405630-46405649 None:intergenic 35.0%
TCATAAGAGCGAAGACATCT+TGG + chr4_1:46399051-46399070 Msa0550840:CDS 40.0%
GATTGCAAGTAAGTGGTAGA+CGG + chr4_1:46399172-46399191 Msa0550840:intron 40.0%
GGTAGTGTTCTTCCTTAGAA+GGG - chr4_1:46399769-46399788 None:intergenic 40.0%
! TGGTAGTGTTCTTCCTTAGA+AGG - chr4_1:46399770-46399789 None:intergenic 40.0%
!! GCATTGGTTTGTTGAATGGA+TGG - chr4_1:46399790-46399809 None:intergenic 40.0%
GCATTATTATATCCTCGAGC+AGG + chr4_1:46399808-46399827 Msa0550840:intron 40.0%
AGAAAAAGACCAAATCAGCG+AGG + chr4_1:46399896-46399915 Msa0550840:CDS 40.0%
! TAGAAGAAACCTCGCTGATT+TGG - chr4_1:46399908-46399927 None:intergenic 40.0%
AGAAGAAGAAGTGAAGGAAC+TGG + chr4_1:46399935-46399954 Msa0550840:CDS 40.0%
AACTGGTTGAGCAGAGTATA+TGG + chr4_1:46399952-46399971 Msa0550840:CDS 40.0%
TTGTTTACTGGACCTGCTAT+TGG + chr4_1:46399996-46400015 Msa0550840:CDS 40.0%
CATAACCAAAGACCAATAGC+AGG - chr4_1:46400011-46400030 None:intergenic 40.0%
!! GCTATTGGTCTTTGGTTATG+CGG + chr4_1:46400011-46400030 Msa0550840:CDS 40.0%
CTCATTGATACTGCTGTTGT+TGG + chr4_1:46400047-46400066 Msa0550840:CDS 40.0%
! TCAATTGAACTCGCTGCTTT+AGG + chr4_1:46400080-46400099 Msa0550840:CDS 40.0%
! TGGGTGGAAATGTAGTGTTT+TGG + chr4_1:46400443-46400462 Msa0550840:intron 40.0%
! ATGGAGTCGTTGGTTAGTAA+TGG + chr4_1:46400588-46400607 Msa0550840:intron 40.0%
TTCCATGGAGCCTAAAACAA+TGG + chr4_1:46400666-46400685 Msa0550840:intron 40.0%
! ATGGTCCACTCCATTGTTTT+AGG - chr4_1:46400679-46400698 None:intergenic 40.0%
TCGCTCTTAGTTCAATGTGA+TGG - chr4_1:46400698-46400717 None:intergenic 40.0%
AGTTCAAAGTCTCACTTGTG+TGG - chr4_1:46400721-46400740 None:intergenic 40.0%
GTTGTGTGTGCATAAAGTCA+TGG - chr4_1:46400916-46400935 None:intergenic 40.0%
TATGTTTGTGTAGGATAGGG+AGG + chr4_1:46400971-46400990 Msa0550840:intron 40.0%
!!! TCCAGTTGTGTCCCTTTTTT+GGG + chr4_1:46401114-46401133 Msa0550840:intron 40.0%
! ATGCCTTTTGCAGCTTTTAC+TGG + chr4_1:46401205-46401224 Msa0550840:intron 40.0%
TGGACATAAGTATTAGCTGC+AGG - chr4_1:46401253-46401272 None:intergenic 40.0%
TGCAGCTAATACTTATGTCC+AGG + chr4_1:46401252-46401271 Msa0550840:CDS 40.0%
!! GCATGGCCTTGTTTACTTAT+TGG + chr4_1:46401578-46401597 Msa0550840:CDS 40.0%
AGTTCACTAGGTATATGCTC+TGG - chr4_1:46402000-46402019 None:intergenic 40.0%
GCTGCTGCCAGTATTATAAA+TGG + chr4_1:46402165-46402184 Msa0550840:CDS 40.0%
TTTAAACTATGGGATCGCTG+GGG + chr4_1:46402215-46402234 Msa0550840:CDS 40.0%
AGAGCACGTGAGAAATCAAT+AGG + chr4_1:46402470-46402489 Msa0550840:intron 40.0%
GAGCACGTGAGAAATCAATA+GGG + chr4_1:46402471-46402490 Msa0550840:intron 40.0%
ACGTGAGAAATCAATAGGGT+GGG + chr4_1:46402475-46402494 Msa0550840:intron 40.0%
ATCAATAGGGTGGGAAAAGA+AGG + chr4_1:46402484-46402503 Msa0550840:intron 40.0%
!! GAGCAAAGCTCTAAATGAGA+AGG + chr4_1:46402737-46402756 Msa0550840:CDS 40.0%
! TTTTCCTTCACCATTCCTTC+AGG + chr4_1:46402771-46402790 Msa0550840:CDS 40.0%
TTTCCTTCACCATTCCTTCA+GGG + chr4_1:46402772-46402791 Msa0550840:CDS 40.0%
AAATTCCTTCCCTGAAGGAA+TGG - chr4_1:46402784-46402803 None:intergenic 40.0%
! TGAAAGTTCTGATGTGTAGG+TGG + chr4_1:46402921-46402940 Msa0550840:intron 40.0%
AATGTGCAGATAGACAGCAA+AGG - chr4_1:46403050-46403069 None:intergenic 40.0%
GCATAAATGATTGGGCAGTT+TGG - chr4_1:46403172-46403191 None:intergenic 40.0%
GTATGGAGTAAATCGGAGTT+TGG + chr4_1:46403202-46403221 Msa0550840:CDS 40.0%
AGTAAATCGGAGTTTGGCAA+AGG + chr4_1:46403208-46403227 Msa0550840:CDS 40.0%
!! CACTGTCTCCTTTGGAATTA+AGG + chr4_1:46403645-46403664 Msa0550840:intron 40.0%
! TGCGATTGAGGTGCTAAAAA+AGG + chr4_1:46404007-46404026 Msa0550840:intron 40.0%
GCCTACTTATTTCGGTAGAA+TGG + chr4_1:46404035-46404054 Msa0550840:intron 40.0%
CCCATTCTACCGAAATAAGT+AGG - chr4_1:46404039-46404058 None:intergenic 40.0%
! ACAGGTTTGCATCGATAACT+CGG + chr4_1:46404145-46404164 Msa0550840:intron 40.0%
GTACTTTCATGATCCTACTC+AGG + chr4_1:46404391-46404410 Msa0550840:intron 40.0%
CAACGATCCACTACTATGAT+CGG - chr4_1:46404419-46404438 None:intergenic 40.0%
TGCACTGCTAGAAAGACTAT+GGG - chr4_1:46404444-46404463 None:intergenic 40.0%
TTGCACTGCTAGAAAGACTA+TGG - chr4_1:46404445-46404464 None:intergenic 40.0%
! GTCTTTCTAGCAGTGCAATT+AGG + chr4_1:46404447-46404466 Msa0550840:CDS 40.0%
! ACACTTGAGGGGGATATTTT+TGG + chr4_1:46404521-46404540 Msa0550840:intron 40.0%
! CACTTGAGGGGGATATTTTT+GGG + chr4_1:46404522-46404541 Msa0550840:intron 40.0%
!!! TAAGGTTTTGGATGGAGATC+TGG + chr4_1:46404633-46404652 Msa0550840:intron 40.0%
TCTTGTTGGTCCATGACATT+GGG + chr4_1:46404666-46404685 Msa0550840:intron 40.0%
TATATTTGCTCATGCAGGCT+GGG + chr4_1:46404782-46404801 Msa0550840:intron 40.0%
!!! ACAACTTTTCCTTGGTTTGC+TGG + chr4_1:46404874-46404893 Msa0550840:intron 40.0%
GATCTGCATCGAGGTAAATT+GGG - chr4_1:46404939-46404958 None:intergenic 40.0%
GGATTTCAATGGGTAAGACA+CGG + chr4_1:46405004-46405023 Msa0550840:intron 40.0%
AAATGCCATTGGGAGATAGA+AGG - chr4_1:46405128-46405147 None:intergenic 40.0%
! TCAATTTTTGCAGCTCAGAC+TGG - chr4_1:46405170-46405189 None:intergenic 40.0%
!!! GGAGCTCCATTTTTAGTTCA+TGG + chr4_1:46405205-46405224 Msa0550840:three_prime_UTR 40.0%
TGTCGATACAATTCAGTGCT+TGG + chr4_1:46405288-46405307 Msa0550840:three_prime_UTR 40.0%
ACCAAATAACTATACCCCAG+TGG - chr4_1:46405418-46405437 None:intergenic 40.0%
! TGGGTTCAAAATGGCTTGTA+AGG + chr4_1:46405512-46405531 Msa0550840:three_prime_UTR 40.0%
AAGAGCGAAGACATCTTGGT+AGG + chr4_1:46399055-46399074 Msa0550840:CDS 45.0%
! AATAGCGCCGAACATGGAAT+TGG - chr4_1:46399218-46399237 None:intergenic 45.0%
! TGTTGCCCACTTGTTAGCTA+AGG + chr4_1:46399311-46399330 Msa0550840:intron 45.0%
TGACGCCTTAGCTAACAAGT+GGG - chr4_1:46399319-46399338 None:intergenic 45.0%
ATGACGCCTTAGCTAACAAG+TGG - chr4_1:46399320-46399339 None:intergenic 45.0%
!! TCATGATAACCGGTGCTACA+GGG - chr4_1:46399448-46399467 None:intergenic 45.0%
AAAACGAGTGGTCTGTAACG+TGG - chr4_1:46399582-46399601 None:intergenic 45.0%
TCTTCCTTAGAAGGGAAGGT+GGG - chr4_1:46399761-46399780 None:intergenic 45.0%
TTCTTCCTTAGAAGGGAAGG+TGG - chr4_1:46399762-46399781 None:intergenic 45.0%
GTGTTCTTCCTTAGAAGGGA+AGG - chr4_1:46399765-46399784 None:intergenic 45.0%
GATACTGCTGTTGTTGGTCA+AGG + chr4_1:46400053-46400072 Msa0550840:CDS 45.0%
! TGAACTCGCTGCTTTAGGTA+TGG + chr4_1:46400085-46400104 Msa0550840:intron 45.0%
! TGCTGTTGCTCCCTATGTTT+TGG + chr4_1:46400492-46400511 Msa0550840:intron 45.0%
! GCTGTTGCTCCCTATGTTTT+GGG + chr4_1:46400493-46400512 Msa0550840:intron 45.0%
! CTGTTGCTCCCTATGTTTTG+GGG + chr4_1:46400494-46400513 Msa0550840:intron 45.0%
ATCCCAGTCCCCAAAACATA+GGG - chr4_1:46400505-46400524 None:intergenic 45.0%
!! AAGTTAACTTGCCGAGAGAG+CGG + chr4_1:46400532-46400551 Msa0550840:intron 45.0%
!! CTTTCTGGTAATGGAGTCGT+TGG + chr4_1:46400578-46400597 Msa0550840:intron 45.0%
! GAGTCGTTGGTTAGTAATGG+CGG + chr4_1:46400591-46400610 Msa0550840:intron 45.0%
TAGTAATGGCGGTGAGAGTA+CGG + chr4_1:46400602-46400621 Msa0550840:intron 45.0%
AAATGTGAGTGTGACCTTGG+TGG + chr4_1:46400640-46400659 Msa0550840:intron 45.0%
!!! CTCCATTGTTTTAGGCTCCA+TGG - chr4_1:46400671-46400690 None:intergenic 45.0%
TGGAGCCTAAAACAATGGAG+TGG + chr4_1:46400671-46400690 Msa0550840:intron 45.0%
GGATGTATACGGGTGTATAC+AGG - chr4_1:46400765-46400784 None:intergenic 45.0%
!! TATTGGGTTAGCATGTGGCT+CGG + chr4_1:46401025-46401044 Msa0550840:CDS 45.0%
!!! CGGCGATGCTTTTTTTCACA+AGG + chr4_1:46401045-46401064 Msa0550840:CDS 45.0%
!!! GTCCAGTTGTGTCCCTTTTT+TGG + chr4_1:46401113-46401132 Msa0550840:intron 45.0%
TCCCAAAAAAGGGACACAAC+TGG - chr4_1:46401118-46401137 None:intergenic 45.0%
CAATTCATCAGTCATGGGGT+AGG - chr4_1:46401177-46401196 None:intergenic 45.0%
GGTCCAGTAAAAGCTGCAAA+AGG - chr4_1:46401211-46401230 None:intergenic 45.0%
!! TTGGTGTTAGATTCGAGGGT+TGG + chr4_1:46401556-46401575 Msa0550840:intron 45.0%
GATCGATTGCTCAAAGTGCA+AGG + chr4_1:46401600-46401619 Msa0550840:CDS 45.0%
TAGGCATTAAGAGGAGAGAG+AGG - chr4_1:46401916-46401935 None:intergenic 45.0%
TATACCTAGTGAACTCCCTG+AGG + chr4_1:46402005-46402024 Msa0550840:intron 45.0%
CAAGACTGCGTGAAAGAATG+TGG - chr4_1:46402110-46402129 None:intergenic 45.0%
CACATTCTTTCACGCAGTCT+TGG + chr4_1:46402108-46402127 Msa0550840:intron 45.0%
TCGTAGGGTGGGAAAAGTAA+TGG - chr4_1:46402343-46402362 None:intergenic 45.0%
TATGGGGTGTATATGCCGTT+CGG + chr4_1:46402426-46402445 Msa0550840:intron 45.0%
CACGTGAGAAATCAATAGGG+TGG + chr4_1:46402474-46402493 Msa0550840:intron 45.0%
!! ATCAACGTGCACTGCTTTTC+AGG + chr4_1:46402695-46402714 Msa0550840:intron 45.0%
GACAGAAATTCCTTCCCTGA+AGG - chr4_1:46402789-46402808 None:intergenic 45.0%
!!! AGCTGTATTCGGGTTGCTTT+TGG + chr4_1:46403512-46403531 Msa0550840:CDS 45.0%
!!! GCTGTATTCGGGTTGCTTTT+GGG + chr4_1:46403513-46403532 Msa0550840:CDS 45.0%
!!! CTGTATTCGGGTTGCTTTTG+GGG + chr4_1:46403514-46403533 Msa0550840:CDS 45.0%
CTGGTATGCTCATGTTCGAT+TGG + chr4_1:46403781-46403800 Msa0550840:intron 45.0%
! GTTTGCATCGATAACTCGGA+GGG + chr4_1:46404149-46404168 Msa0550840:intron 45.0%
GATGTGAGACTCACACTTGA+GGG + chr4_1:46404509-46404528 Msa0550840:intron 45.0%
ATGTGAGACTCACACTTGAG+GGG + chr4_1:46404510-46404529 Msa0550840:intron 45.0%
TCATGGACCAACAAGAGATC+AGG - chr4_1:46404662-46404681 None:intergenic 45.0%
CTCTTGTTGGTCCATGACAT+TGG + chr4_1:46404665-46404684 Msa0550840:intron 45.0%
CAAAAACAGGCCCAATGTCA+TGG - chr4_1:46404679-46404698 None:intergenic 45.0%
GTATATTTGCTCATGCAGGC+TGG + chr4_1:46404781-46404800 Msa0550840:intron 45.0%
CTATGTACACCAGCAAACCA+AGG - chr4_1:46404886-46404905 None:intergenic 45.0%
GGATCTGCATCGAGGTAAAT+TGG - chr4_1:46404940-46404959 None:intergenic 45.0%
CAGATCCTATCCAGCAGATA+TGG + chr4_1:46404953-46404972 Msa0550840:intron 45.0%
GCAAACCATATCTGCTGGAT+AGG - chr4_1:46404961-46404980 None:intergenic 45.0%
! TCCAGCAGATATGGTTTGCA+AGG + chr4_1:46404962-46404981 Msa0550840:CDS 45.0%
! GATATGGTTTGCAAGGCTGT+TGG + chr4_1:46404969-46404988 Msa0550840:CDS 45.0%
ATTCAGTGCTTGGAAACTGC+AGG + chr4_1:46405298-46405317 Msa0550840:three_prime_UTR 45.0%
GAGTTGTATCGGAAACTGTG+CGG + chr4_1:46405325-46405344 Msa0550840:three_prime_UTR 45.0%
AGTTGTATCGGAAACTGTGC+GGG + chr4_1:46405326-46405345 Msa0550840:three_prime_UTR 45.0%
AAGATATACGTTCAAGGCGG+TGG - chr4_1:46405378-46405397 None:intergenic 45.0%
GCCACTGGGGTATAGTTATT+TGG + chr4_1:46405414-46405433 Msa0550840:three_prime_UTR 45.0%
! TGGCTTGTAAGGTAGGAATG+TGG + chr4_1:46405523-46405542 Msa0550840:three_prime_UTR 45.0%
! TCATCGATTGTGGATGGGAA+TGG - chr4_1:46405625-46405644 None:intergenic 45.0%
!! ATTTAATAATATTATACTAT+TGG + chr4_1:46402056-46402075 Msa0550840:intron 5.0%
!! TTTAATAATATTATACTATT+GGG + chr4_1:46402057-46402076 Msa0550840:intron 5.0%
! GTTCAGAATAGCGCCGAACA+TGG - chr4_1:46399224-46399243 None:intergenic 50.0%
AAATCAGTGCCCTGTAGCAC+CGG + chr4_1:46399436-46399455 Msa0550840:intron 50.0%
!! GTCATGATAACCGGTGCTAC+AGG - chr4_1:46399449-46399468 None:intergenic 50.0%
!! CTGGACCTGCTATTGGTCTT+TGG + chr4_1:46400003-46400022 Msa0550840:CDS 50.0%
TGCTACTGCCCTTGCTAAAC+AGG + chr4_1:46400255-46400274 Msa0550840:CDS 50.0%
!!! CTCCCTATGTTTTGGGGACT+GGG + chr4_1:46400500-46400519 Msa0550840:intron 50.0%
GATCCCAGTCCCCAAAACAT+AGG - chr4_1:46400506-46400525 None:intergenic 50.0%
GCTCTCTCGGCAAGTTAACT+TGG - chr4_1:46400533-46400552 None:intergenic 50.0%
!! AGTTAACTTGCCGAGAGAGC+GGG + chr4_1:46400533-46400552 Msa0550840:intron 50.0%
AAGATCTACTCCCGCTCTCT+CGG - chr4_1:46400546-46400565 None:intergenic 50.0%
! GTTAGATTCGAGGGTTGGCA+TGG + chr4_1:46401561-46401580 Msa0550840:intron 50.0%
TACTCCTCAGGGAGTTCACT+AGG - chr4_1:46402012-46402031 None:intergenic 50.0%
AGATTCTTGGGGACCCTTGA+AGG + chr4_1:46402137-46402156 Msa0550840:CDS 50.0%
TTCCCACCCTACGAGTTTCT+CGG + chr4_1:46402349-46402368 Msa0550840:intron 50.0%
AGTTTCTCGGGTGCCCTATT+CGG + chr4_1:46402362-46402381 Msa0550840:intron 50.0%
CTTCCCTGAAGGAATGGTGA+AGG - chr4_1:46402778-46402797 None:intergenic 50.0%
CTTCACCATTCCTTCAGGGA+AGG + chr4_1:46402776-46402795 Msa0550840:CDS 50.0%
ACCTGATCAGATGGTCATCC+AGG + chr4_1:46403581-46403600 Msa0550840:CDS 50.0%
TCCTGGATGACCATCTGATC+AGG - chr4_1:46403585-46403604 None:intergenic 50.0%
TGATCAGATGGTCATCCAGG+AGG + chr4_1:46403584-46403603 Msa0550840:CDS 50.0%
ATACCAGCAATGTTCCCTCC+AGG - chr4_1:46403768-46403787 None:intergenic 50.0%
! GGTTTGCATCGATAACTCGG+AGG + chr4_1:46404148-46404167 Msa0550840:intron 50.0%
! GCGGTTGGTACTTCCATGTA+AGG - chr4_1:46404358-46404377 None:intergenic 50.0%
ACTATGATCGGAGCCTGAGT+AGG - chr4_1:46404407-46404426 None:intergenic 50.0%
TCAGGCTCCGATCATAGTAG+TGG + chr4_1:46404409-46404428 Msa0550840:intron 50.0%
GGATGTGAGACTCACACTTG+AGG + chr4_1:46404508-46404527 Msa0550840:intron 50.0%
TGTGAGACTCACACTTGAGG+GGG + chr4_1:46404511-46404530 Msa0550840:intron 50.0%
CTGGTGTCCTGATCTCTTGT+TGG + chr4_1:46404652-46404671 Msa0550840:intron 50.0%
GGAGCAACGAGAGCAAAAAC+AGG - chr4_1:46404692-46404711 None:intergenic 50.0%
TCATGAATGTTGGGGAGTCC+GGG - chr4_1:46404715-46404734 None:intergenic 50.0%
GTCATGAATGTTGGGGAGTC+CGG - chr4_1:46404716-46404735 None:intergenic 50.0%
GCCTTGCAAACCATATCTGC+TGG - chr4_1:46404966-46404985 None:intergenic 50.0%
!!! GGCTGTTGGTTTTCACTTGC+TGG + chr4_1:46404983-46405002 Msa0550840:CDS 50.0%
! GGGAGATAGAAGGCGCAAAA+GGG - chr4_1:46405118-46405137 None:intergenic 50.0%
! TGGGAGATAGAAGGCGCAAA+AGG - chr4_1:46405119-46405138 None:intergenic 50.0%
TTGCGCCTTCTATCTCCCAA+TGG + chr4_1:46405120-46405139 Msa0550840:CDS 50.0%
!! CTGCAGGTGCTGAGTTGTAT+CGG + chr4_1:46405314-46405333 Msa0550840:three_prime_UTR 50.0%
GTTGTATCGGAAACTGTGCG+GGG + chr4_1:46405327-46405346 Msa0550840:three_prime_UTR 50.0%
!! TGATCAAGTGTGGTGCCACT+GGG + chr4_1:46405400-46405419 Msa0550840:three_prime_UTR 50.0%
AGGTCTCCCACAACTCAACG+AGG + chr4_1:46399075-46399094 Msa0550840:CDS 55.0%
TCTCCCACAACTCAACGAGG+CGG + chr4_1:46399078-46399097 Msa0550840:CDS 55.0%
GTCTGTAACGTGGAATCCGC+GGG - chr4_1:46399572-46399591 None:intergenic 55.0%
GGTCTGTAACGTGGAATCCG+CGG - chr4_1:46399573-46399592 None:intergenic 55.0%
GAAGGTGGGAGGAAACGAAG+AGG - chr4_1:46399747-46399766 None:intergenic 55.0%
TCCTCCCACCTTCCCTTCTA+AGG + chr4_1:46399754-46399773 Msa0550840:intron 55.0%
TCCTTAGAAGGGAAGGTGGG+AGG - chr4_1:46399758-46399777 None:intergenic 55.0%
!!! GCTCCCTATGTTTTGGGGAC+TGG + chr4_1:46400499-46400518 Msa0550840:intron 55.0%
! TGACCTTGGTGGCACTTCCA+TGG + chr4_1:46400651-46400670 Msa0550840:intron 55.0%
TTAGGCGCAACAACGCTAGC+AGG + chr4_1:46401071-46401090 Msa0550840:CDS 55.0%
TTGGGGACCCTTGAAGGCTT+TGG + chr4_1:46402143-46402162 Msa0550840:CDS 55.0%
GCAGCAGCCAAAGCCTTCAA+GGG - chr4_1:46402153-46402172 None:intergenic 55.0%
TCCCACCCTACGAGTTTCTC+GGG + chr4_1:46402350-46402369 Msa0550840:intron 55.0%
ACCCGAGAAACTCGTAGGGT+GGG - chr4_1:46402354-46402373 None:intergenic 55.0%
CTCACGTGCTCTGTGCAGTT+TGG - chr4_1:46402462-46402481 None:intergenic 55.0%
GATTGGGCAGTTTGGGAGAG+AGG - chr4_1:46403164-46403183 None:intergenic 55.0%
CTGGTCACACCTGCAACAGT+CGG + chr4_1:46403742-46403761 Msa0550840:CDS 55.0%
! TTTTGCTCTCGTTGCTCCCC+CGG + chr4_1:46404694-46404713 Msa0550840:intron 55.0%
ATGAATGTTGGGGAGTCCGG+GGG - chr4_1:46404713-46404732 None:intergenic 55.0%
CATGAATGTTGGGGAGTCCG+GGG - chr4_1:46404714-46404733 None:intergenic 55.0%
ATTTGCTCATGCAGGCTGGG+CGG + chr4_1:46404785-46404804 Msa0550840:intron 55.0%
GCTGGATAGGATCTGCATCG+AGG - chr4_1:46404948-46404967 None:intergenic 55.0%
TCGGAAACTGTGCGGGGAAA+TGG + chr4_1:46405333-46405352 Msa0550840:three_prime_UTR 55.0%
CGGAAACTGTGCGGGGAAAT+GGG + chr4_1:46405334-46405353 Msa0550840:three_prime_UTR 55.0%
GGAAACTGTGCGGGGAAATG+GGG + chr4_1:46405335-46405354 Msa0550840:three_prime_UTR 55.0%
GAAACTGTGCGGGGAAATGG+GGG + chr4_1:46405336-46405355 Msa0550840:three_prime_UTR 55.0%
!! GTGATCAAGTGTGGTGCCAC+TGG + chr4_1:46405399-46405418 Msa0550840:three_prime_UTR 55.0%
!! GATCAAGTGTGGTGCCACTG+GGG + chr4_1:46405401-46405420 Msa0550840:three_prime_UTR 55.0%
! CGTCCGCCTCGTTGAGTTGT+GGG - chr4_1:46399084-46399103 None:intergenic 60.0%
! GGAGGAAACGAAGAGGTGCG+TGG - chr4_1:46399740-46399759 None:intergenic 60.0%
GAAGCGACTGTTCCTGCTCG+AGG - chr4_1:46399823-46399842 None:intergenic 60.0%
!! GCTCCATGGAAGTGCCACCA+AGG - chr4_1:46400657-46400676 None:intergenic 60.0%
GGCAGCAGCCAAAGCCTTCA+AGG - chr4_1:46402154-46402173 None:intergenic 60.0%
! TGGGGCTGCATGGGCTACAT+TGG + chr4_1:46402233-46402252 Msa0550840:CDS 60.0%
CACCCGAGAAACTCGTAGGG+TGG - chr4_1:46402355-46402374 None:intergenic 60.0%
GGGCACCCGAGAAACTCGTA+GGG - chr4_1:46402358-46402377 None:intergenic 60.0%
! AGGGCACCCGAGAAACTCGT+AGG - chr4_1:46402359-46402378 None:intergenic 60.0%
! GACAGGCTCGGTCGCTTCTA+AGG + chr4_1:46403472-46403491 Msa0550840:intron 60.0%
TTTGCTCATGCAGGCTGGGC+GGG + chr4_1:46404786-46404805 Msa0550840:intron 60.0%
TGCGGGGAAATGGGGGATGT+GGG + chr4_1:46405343-46405362 Msa0550840:three_prime_UTR 60.0%
! GCGTCCGCCTCGTTGAGTTG+TGG - chr4_1:46399085-46399104 None:intergenic 65.0%
CTCAACGAGGCGGACGCAAG+AGG + chr4_1:46399088-46399107 Msa0550840:CDS 65.0%
ATGGGATCGCTGGGGCTGCA+TGG + chr4_1:46402223-46402242 Msa0550840:CDS 65.0%
TGGGATCGCTGGGGCTGCAT+GGG + chr4_1:46402224-46402243 Msa0550840:CDS 65.0%
CACACCTGCAACAGTCGGCC+TGG + chr4_1:46403747-46403766 Msa0550840:CDS 65.0%
ACCTGCAACAGTCGGCCTGG+AGG + chr4_1:46403750-46403769 Msa0550840:CDS 65.0%
CCTGCAACAGTCGGCCTGGA+GGG + chr4_1:46403751-46403770 Msa0550840:CDS 65.0%
CGGCCTGGAGGGAACATTGC+TGG + chr4_1:46403762-46403781 Msa0550840:CDS 65.0%
GTGCGGGGAAATGGGGGATG+TGG + chr4_1:46405342-46405361 Msa0550840:three_prime_UTR 65.0%
CCCTCCAGGCCGACTGTTGC+AGG - chr4_1:46403754-46403773 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 46399043 46405649 46399043 ID=Msa0550840;Name=Msa0550840
chr4_1 mRNA 46399043 46405649 46399043 ID=Msa0550840-mRNA-1;Parent=Msa0550840;Name=Msa0550840-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0.8|0.81|0.87|1|1|16|449|559
chr4_1 exon 46399043 46399179 46399043 ID=Msa0550840-mRNA-1:exon:12499;Parent=Msa0550840-mRNA-1
chr4_1 exon 46399830 46400101 46399830 ID=Msa0550840-mRNA-1:exon:12500;Parent=Msa0550840-mRNA-1
chr4_1 exon 46400182 46400276 46400182 ID=Msa0550840-mRNA-1:exon:12501;Parent=Msa0550840-mRNA-1
chr4_1 exon 46400984 46401092 46400984 ID=Msa0550840-mRNA-1:exon:12502;Parent=Msa0550840-mRNA-1
chr4_1 exon 46401218 46401273 46401218 ID=Msa0550840-mRNA-1:exon:12503;Parent=Msa0550840-mRNA-1
chr4_1 exon 46401566 46401621 46401566 ID=Msa0550840-mRNA-1:exon:12504;Parent=Msa0550840-mRNA-1
chr4_1 exon 46402125 46402263 46402125 ID=Msa0550840-mRNA-1:exon:12505;Parent=Msa0550840-mRNA-1
chr4_1 exon 46402717 46402854 46402717 ID=Msa0550840-mRNA-1:exon:12506;Parent=Msa0550840-mRNA-1
chr4_1 exon 46402940 46403008 46402940 ID=Msa0550840-mRNA-1:exon:12507;Parent=Msa0550840-mRNA-1
chr4_1 exon 46403119 46403229 46403119 ID=Msa0550840-mRNA-1:exon:12508;Parent=Msa0550840-mRNA-1
chr4_1 exon 46403477 46403605 46403477 ID=Msa0550840-mRNA-1:exon:12509;Parent=Msa0550840-mRNA-1
chr4_1 exon 46403706 46403783 46403706 ID=Msa0550840-mRNA-1:exon:12510;Parent=Msa0550840-mRNA-1
chr4_1 exon 46404413 46404469 46404413 ID=Msa0550840-mRNA-1:exon:12511;Parent=Msa0550840-mRNA-1
chr4_1 exon 46404799 46404870 46404799 ID=Msa0550840-mRNA-1:exon:12512;Parent=Msa0550840-mRNA-1
chr4_1 exon 46404956 46405015 46404956 ID=Msa0550840-mRNA-1:exon:12513;Parent=Msa0550840-mRNA-1
chr4_1 exon 46405099 46405649 46405099 ID=Msa0550840-mRNA-1:exon:12514;Parent=Msa0550840-mRNA-1
chr4_1 CDS 46399043 46399179 46399043 ID=Msa0550840-mRNA-1:cds;Parent=Msa0550840-mRNA-1
chr4_1 CDS 46399830 46400101 46399830 ID=Msa0550840-mRNA-1:cds;Parent=Msa0550840-mRNA-1
chr4_1 CDS 46400182 46400276 46400182 ID=Msa0550840-mRNA-1:cds;Parent=Msa0550840-mRNA-1
chr4_1 CDS 46400984 46401092 46400984 ID=Msa0550840-mRNA-1:cds;Parent=Msa0550840-mRNA-1
chr4_1 CDS 46401218 46401273 46401218 ID=Msa0550840-mRNA-1:cds;Parent=Msa0550840-mRNA-1
chr4_1 CDS 46401566 46401621 46401566 ID=Msa0550840-mRNA-1:cds;Parent=Msa0550840-mRNA-1
chr4_1 CDS 46402125 46402263 46402125 ID=Msa0550840-mRNA-1:cds;Parent=Msa0550840-mRNA-1
chr4_1 CDS 46402717 46402854 46402717 ID=Msa0550840-mRNA-1:cds;Parent=Msa0550840-mRNA-1
chr4_1 CDS 46402940 46403008 46402940 ID=Msa0550840-mRNA-1:cds;Parent=Msa0550840-mRNA-1
chr4_1 CDS 46403119 46403229 46403119 ID=Msa0550840-mRNA-1:cds;Parent=Msa0550840-mRNA-1
chr4_1 CDS 46403477 46403605 46403477 ID=Msa0550840-mRNA-1:cds;Parent=Msa0550840-mRNA-1
chr4_1 CDS 46403706 46403783 46403706 ID=Msa0550840-mRNA-1:cds;Parent=Msa0550840-mRNA-1
chr4_1 CDS 46404413 46404469 46404413 ID=Msa0550840-mRNA-1:cds;Parent=Msa0550840-mRNA-1
chr4_1 CDS 46404799 46404870 46404799 ID=Msa0550840-mRNA-1:cds;Parent=Msa0550840-mRNA-1
chr4_1 CDS 46404956 46405015 46404956 ID=Msa0550840-mRNA-1:cds;Parent=Msa0550840-mRNA-1
chr4_1 CDS 46405099 46405200 46405099 ID=Msa0550840-mRNA-1:cds;Parent=Msa0550840-mRNA-1
chr4_1 three_prime_UTR 46405201 46405649 46405201 ID=Msa0550840-mRNA-1:three_prime_utr;Parent=Msa0550840-mRNA-1
Gene Sequence

>Msa0550840

ATGGGAGTTCATAAGAGCGAAGACATCTTGGTAGGTCTCCCACAACTCAACGAGGCGGACGCAAGAGGTCTAAAAGAAGCGATAATGTGGCTTGATACTTTAAGTTTTACTTCGGTGTCTATTGAACTTGATTGCAAGAACAGTCGCTTCAAGTTTCTAACAGCTTGCTCAGTTCAAAATTACGATGCTATAGATGAAGCCGAAGAAAAAGACCAAATCAGCGAGGTTTCTTCTAAAGAAGAAGAAGAAGAAGTGAAGGAACTGGTTGAGCAGAGTATATGGATTCAGATGAAGGAAATTGTATTGTTTACTGGACCTGCTATTGGTCTTTGGTTATGCGGACCGTTGATGAGTCTCATTGATACTGCTGTTGTTGGTCAAGGAAGTTCAATTGAACTCGCTGCTTTAGGTCCTGCTACTGTTTTTTGTGATTATTTGGGCTACTCTTTTATGTTTCTATCGATTGCTACTTCGAATATGGTTGCTACTGCCCTTGCTAAACAGGATAGGGAGGAAGTGCAGCATCACATATCTGTCTTGCTTTTTATTGGGTTAGCATGTGGCTCGGCGATGCTTTTTTTCACAAGGTTATTAGGCGCAACAACGCTAGCAGCTTTTACTGGACCGAAGAATGTACATTTAGTACCTGCAGCTAATACTTATGTCCAGATTCGAGGGTTGGCATGGCCTTGTTTACTTATTGGATCGATTGCTCAAAGTGCAAGTCTTGGTATGAAAGATTCTTGGGGACCCTTGAAGGCTTTGGCTGCTGCCAGTATTATAAATGGAATTGGTGATATAGTTCTGTGCAGATATTTAAACTATGGGATCGCTGGGGCTGCATGGGCTACATTGGCATCCCAAGTCGTTGCTGCGTATATGATGAGCAAAGCTCTAAATGAGAAGGGATACAATGCATTTTCCTTCACCATTCCTTCAGGGAAGGAATTTCTGTCAATATTTAGTCTTGCTGCTCCTGTATTTGTGACATTGATGTTAAAGGTGGCTTTCTACTCTCTAATTATATATTTTGCTACATCAATGGGTACAAATAAAATAGCTGCTCATCAAGTCATGCTTCAGGTCTACATGTTATGCGCAATATGTGGTGAACCTCTCTCCCAAACTGCCCAATCATTTATGCCTGAGTTGATGTATGGAGTAAATCGGAGTTTGGCAAAGGCTCGGTCGCTTCTAAGGTCTCTTCTAACTATTGGAGCTGTATTCGGGTTGCTTTTGGGGATTGTTGTAACATCTGTTACTTGGTTATTCCCCTACATTTTTACACCTGATCAGATGGTCATCCAGGAGATGCATAGGATTCTGATTCCATTCTTTTTAGCACTACTGGTCACACCTGCAACAGTCGGCCTGGAGGGAACATTGCTGGCTCCGATCATAGTAGTGGATCGTTGCACCCATAGTCTTTCTAGCAGTGCAATTAGGGCTGGGCGGGATCTAAGATTTATAAGTTTGTCAATGACTGGATGCTTTTGTTTGAATGGTCTAGTATTATTGATCCTATCCAGCAGATATGGTTTGCAAGGCTGTTGGTTTTCACTTGCTGGATTTCAATGGGTTCGGTTTTCATCGGCCCTTTTGCGCCTTCTATCTCCCAATGGCATTTTATACTCGGAAGATATAAGCCAGTCTGAGCTGCAAAAATTGAAGACTGCATAA

Protein sequence

>Msa0550840

MGVHKSEDILVGLPQLNEADARGLKEAIMWLDTLSFTSVSIELDCKNSRFKFLTACSVQNYDAIDEAEEKDQISEVSSKEEEEEVKELVEQSIWIQMKEIVLFTGPAIGLWLCGPLMSLIDTAVVGQGSSIELAALGPATVFCDYLGYSFMFLSIATSNMVATALAKQDREEVQHHISVLLFIGLACGSAMLFFTRLLGATTLAAFTGPKNVHLVPAANTYVQIRGLAWPCLLIGSIAQSASLGMKDSWGPLKALAAASIINGIGDIVLCRYLNYGIAGAAWATLASQVVAAYMMSKALNEKGYNAFSFTIPSGKEFLSIFSLAAPVFVTLMLKVAFYSLIIYFATSMGTNKIAAHQVMLQVYMLCAICGEPLSQTAQSFMPELMYGVNRSLAKARSLLRSLLTIGAVFGLLLGIVVTSVTWLFPYIFTPDQMVIQEMHRILIPFFLALLVTPATVGLEGTLLAPIIVVDRCTHSLSSSAIRAGRDLRFISLSMTGCFCLNGLVLLILSSRYGLQGCWFSLAGFQWVRFSSALLRLLSPNGILYSEDISQSELQKLKTA*