AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0930150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0930150 MtrunA17_Chr8g0392631 87.449 247 13 4 1 244 1 232 1.14e-153 426
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0930150 AT1G18060.1 71.066 197 56 1 47 242 28 224 3.35e-101 293

Find 59 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAATCATTCAGAGATATT+TGG 0.159294 6_2:-78966991 None:intergenic
TCTCTGAGTTTCTGACTTAT+TGG 0.171564 6_2:+78966499 Msa0930150:three_prime_UTR
GAAAGAAATATTCACATATA+TGG 0.257473 6_2:+78966521 Msa0930150:three_prime_UTR
TGATAAATTGTTAGGCAAAA+AGG 0.263160 6_2:+78966151 Msa0930150:intron
ATCGAAAACGGTGTATTTCT+TGG 0.273425 6_2:+78966174 Msa0930150:CDS
TGTTGAATAATAACACATTA+TGG 0.301842 6_2:-78966904 None:intergenic
GAAACAGTTGAAGTTCATTC+AGG 0.309771 6_2:+78966547 Msa0930150:three_prime_UTR
ACATATTGAGTACTAGGTTT+TGG 0.317968 6_2:+78966796 Msa0930150:three_prime_UTR
CCGGCCATTTGTGAGAAAAT+AGG 0.320453 6_2:+78966712 Msa0930150:three_prime_UTR
ATGCCCCTGCTGTAGAAATT+CGG 0.341608 6_2:+78966687 Msa0930150:intron
GGAATGCATTTCGTCTATAA+TGG 0.355470 6_2:+78967093 Msa0930150:three_prime_UTR
GGATTTGTTGCTGGCTGAAA+TGG 0.375364 6_2:+78966817 Msa0930150:three_prime_UTR
TCAAGACGACAATCCCAAAA+AGG 0.386923 6_2:+78964943 Msa0930150:CDS
TGCCCCTGCTGTAGAAATTC+GGG 0.391526 6_2:+78966688 Msa0930150:intron
GAAGTGGAGGCACTGCATTT+TGG 0.392068 6_2:+78966403 Msa0930150:CDS
GTTGTTCTGAGAGACTTTGA+TGG 0.410391 6_2:-78964824 None:intergenic
GAGAACCTTCGAATAAAAGT+TGG 0.424151 6_2:+78966264 Msa0930150:CDS
ACAAATCAGCCTTGGACAAA+AGG 0.429622 6_2:+78966302 Msa0930150:CDS
TTAGTTACATATTGAGTACT+AGG 0.432461 6_2:+78966790 Msa0930150:three_prime_UTR
AGCACTCACACTTGCAAGAT+AGG 0.432634 6_2:-78967156 None:intergenic
GCCTTGGACAAAAGGAAGAC+AGG 0.435622 6_2:+78966310 Msa0930150:CDS
AGGATTCCCCTGGGAGAACC+TGG 0.442328 6_2:+78965344 Msa0930150:CDS
ATCGGACAATTAACATTTGA+AGG 0.443887 6_2:+78966201 Msa0930150:CDS
GCAGCTAACTTCACCTAATG+AGG 0.470454 6_2:-78966866 None:intergenic
TCTTGACACCCTTGGAGGAA+AGG 0.485221 6_2:+78965324 Msa0930150:CDS
CAGGGGAATCCTTTCCTCCA+AGG 0.495511 6_2:-78965333 None:intergenic
CAGCTAGCTACATTTGCAAA+TGG 0.499233 6_2:+78964742 Msa0930150:exon
GAGATGTACAACACATGAAT+CGG 0.503782 6_2:-78964791 None:intergenic
AAACCTCTACAAATCAGCCT+TGG 0.505462 6_2:+78966294 Msa0930150:CDS
GAAAAGAAAGTCATAAGTAT+TGG 0.511297 6_2:-78967058 None:intergenic
CTTGGAGGAAAGGATTCCCC+TGG 0.519361 6_2:+78965334 Msa0930150:CDS
TGTCCAAGGCTGATTTGTAG+AGG 0.525164 6_2:-78966297 None:intergenic
GGTGTATTTCTTGGACCTAT+CGG 0.527087 6_2:+78966183 Msa0930150:CDS
AGGGGAATCCTTTCCTCCAA+GGG 0.528136 6_2:-78965332 None:intergenic
ATAAGCATCCAGGTTCTCCC+AGG 0.529448 6_2:-78965352 None:intergenic
TCAAATGTTAATTGTCCGAT+AGG 0.532866 6_2:-78966198 None:intergenic
GCTGAAAGAATCTCTTCTGC+TGG 0.545166 6_2:-78965259 None:intergenic
ATGTAACTAACTGAATCTGA+TGG 0.559804 6_2:-78966777 None:intergenic
TTGTCGTCTTGAACAACAAG+TGG 0.560112 6_2:-78964932 None:intergenic
TATCTTTACGTAGGAAGTAG+AGG 0.562498 6_2:+78965192 Msa0930150:intron
CAGCTAACTTCACCTAATGA+GGG 0.569648 6_2:-78966865 None:intergenic
GTTGCTCGAGGCCGAAGTGG+AGG 0.570500 6_2:+78966390 Msa0930150:CDS
AAATGCAGCTAAGACAAGAA+AGG 0.570671 6_2:+78965234 Msa0930150:CDS
CTGCTGTAGAAATTCGGGCC+CGG 0.582483 6_2:+78966693 Msa0930150:intron
AATCTCTGAACAGCTGTGAG+AGG 0.593439 6_2:-78965505 None:intergenic
CCTTGGACAAAAGGAAGACA+GGG 0.594579 6_2:+78966311 Msa0930150:CDS
TAAAATGGTTGAGAAGTGAA+AGG 0.596929 6_2:+78964698 Msa0930150:five_prime_UTR
TAAGCATCCAGGTTCTCCCA+GGG 0.619857 6_2:-78965351 None:intergenic
GCTGTTGCTCGAGGCCGAAG+TGG 0.620105 6_2:+78966387 Msa0930150:CDS
AGGGTGTCAAGAAAAGAAGA+AGG 0.621327 6_2:-78965313 None:intergenic
CATTTGAAGGCAGACTGTCG+TGG 0.634559 6_2:+78966214 Msa0930150:CDS
TTGGAGGAAAGGATTCCCCT+GGG 0.641606 6_2:+78965335 Msa0930150:CDS
TGTCGTCTTGAACAACAAGT+GGG 0.651937 6_2:-78964931 None:intergenic
AATGCATTCCAACAAATGTG+TGG 0.652324 6_2:-78967080 None:intergenic
AAAATGCAGTGCCTCCACTT+CGG 0.663787 6_2:-78966401 None:intergenic
GAGGAAATAGCTGTTGCTCG+AGG 0.672148 6_2:+78966378 Msa0930150:CDS
AGACAGGGAACCAAGTACAA+AGG 0.680370 6_2:+78966326 Msa0930150:CDS
ATGTCGTAACATCTTTACTG+TGG 0.709946 6_2:+78966927 Msa0930150:three_prime_UTR
AAGCATCCAGGTTCTCCCAG+GGG 0.717216 6_2:-78965350 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAGTAAAGTAAAA+TGG + chr6_2:78964683-78964702 Msa0930150:five_prime_UTR 10.0%
!!! TATAATTTTTACTTATGTTA+AGG + chr6_2:78965716-78965735 Msa0930150:intron 10.0%
!!! GAATTTTAGAAAAAATTAGA+TGG + chr6_2:78965469-78965488 Msa0930150:intron 15.0%
!!! ATTAATTTTTCCACTATAAA+TGG - chr6_2:78965594-78965613 None:intergenic 15.0%
!!! TTTTAGAAAAAATTAGATGG+TGG + chr6_2:78965472-78965491 Msa0930150:intron 20.0%
!!! TATCTAGAATGAAATATAGA+TGG - chr6_2:78965562-78965581 None:intergenic 20.0%
!!! GTTTTTATCTATGAGTTATA+AGG + chr6_2:78965935-78965954 Msa0930150:intron 20.0%
!!! TCTTTAGAAGAAAAAAAACT+AGG + chr6_2:78966082-78966101 Msa0930150:intron 20.0%
!!! CTTTAGAAGAAAAAAAACTA+GGG + chr6_2:78966083-78966102 Msa0930150:intron 20.0%
!!! TGTTATGTTGATAAATTGTT+AGG + chr6_2:78966143-78966162 Msa0930150:intron 20.0%
!! ACATAAAACCAGATAAAAAA+TGG - chr6_2:78966354-78966373 None:intergenic 20.0%
!! GAAAGAAATATTCACATATA+TGG + chr6_2:78966521-78966540 Msa0930150:three_prime_UTR 20.0%
!! TGTTGAATAATAACACATTA+TGG - chr6_2:78966907-78966926 None:intergenic 20.0%
! CCAAATTGAAATAAATGGAA+AGG - chr6_2:78965001-78965020 None:intergenic 25.0%
! CCTTTCCATTTATTTCAATT+TGG + chr6_2:78964998-78965017 Msa0930150:intron 25.0%
! TGGTTCCAAATTGAAATAAA+TGG - chr6_2:78965006-78965025 None:intergenic 25.0%
!! TTTAACTTCTATCTTTACGT+AGG + chr6_2:78965183-78965202 Msa0930150:intron 25.0%
! CTTCTAATTATGCAAATGAA+GGG - chr6_2:78965621-78965640 None:intergenic 25.0%
! TCAAAACACAAACACATAAA+AGG - chr6_2:78965650-78965669 None:intergenic 25.0%
! TGGTAAATCACAATGTTATT+TGG + chr6_2:78965895-78965914 Msa0930150:intron 25.0%
!! AATCACAATGTTATTTGGAA+TGG + chr6_2:78965900-78965919 Msa0930150:intron 25.0%
!! CAATGAAGAATCTTTTATAG+AGG - chr6_2:78965961-78965980 None:intergenic 25.0%
! TGATAAATTGTTAGGCAAAA+AGG + chr6_2:78966151-78966170 Msa0930150:intron 25.0%
!! TTGATTCTTTTGCATTTTTG+TGG + chr6_2:78966449-78966468 Msa0930150:exon 25.0%
! TCTATATACATTTCAGTTTC+TGG - chr6_2:78966623-78966642 None:intergenic 25.0%
! TTAGTTACATATTGAGTACT+AGG + chr6_2:78966790-78966809 Msa0930150:three_prime_UTR 25.0%
! TCAAATCATTCAGAGATATT+TGG - chr6_2:78966994-78967013 None:intergenic 25.0%
! GAAAAGAAAGTCATAAGTAT+TGG - chr6_2:78967061-78967080 None:intergenic 25.0%
TAAAATGGTTGAGAAGTGAA+AGG + chr6_2:78964698-78964717 Msa0930150:five_prime_UTR 30.0%
!!! GTTGTTTTGAATGTCATCAA+GGG - chr6_2:78964912-78964931 None:intergenic 30.0%
! AATAGCATGCATACCTTTTT+GGG - chr6_2:78964959-78964978 None:intergenic 30.0%
CTTATGGACATGTTATAAGT+TGG - chr6_2:78965026-78965045 None:intergenic 30.0%
ATATATCCTTGAAGAGCTTA+TGG - chr6_2:78965042-78965061 None:intergenic 30.0%
AGCTCTTCAAGGATATATTA+TGG + chr6_2:78965044-78965063 Msa0930150:intron 30.0%
!!! GATGCTTATTTTTACTGCTA+AGG + chr6_2:78965366-78965385 Msa0930150:CDS 30.0%
! TCTCTTATTTCGTATGATTC+TGG + chr6_2:78965401-78965420 Msa0930150:intron 30.0%
ACATAAGAGTCCATTTATAG+TGG + chr6_2:78965581-78965600 Msa0930150:intron 30.0%
GCTTCTAATTATGCAAATGA+AGG - chr6_2:78965622-78965641 None:intergenic 30.0%
!! TGTGTTTTGAACTACATTCT+CGG + chr6_2:78965660-78965679 Msa0930150:intron 30.0%
TGTTAAGGACAATTCTACAT+TGG + chr6_2:78965731-78965750 Msa0930150:intron 30.0%
TTCTACATTGGATATTGTGA+TGG + chr6_2:78965743-78965762 Msa0930150:intron 30.0%
ATAACATTGTGATTTACCAC+CGG - chr6_2:78965894-78965913 None:intergenic 30.0%
TTGCATAAGAAGAGTTAAGA+AGG - chr6_2:78965984-78966003 None:intergenic 30.0%
TGGCATAAGCAACATTTAAA+AGG - chr6_2:78966038-78966057 None:intergenic 30.0%
TATGCCAAATCATCAAACTA+TGG + chr6_2:78966051-78966070 Msa0930150:intron 30.0%
! TTAGCCATAGTTTGATGATT+TGG - chr6_2:78966058-78966077 None:intergenic 30.0%
TCAAATGTTAATTGTCCGAT+AGG - chr6_2:78966201-78966220 None:intergenic 30.0%
ATCGGACAATTAACATTTGA+AGG + chr6_2:78966201-78966220 Msa0930150:CDS 30.0%
!! CTGATTTGTAGAGGTTTTAA+AGG - chr6_2:78966291-78966310 None:intergenic 30.0%
AAAAATGGATCCTTTGTACT+TGG - chr6_2:78966339-78966358 None:intergenic 30.0%
!!! CAAAGGATCCATTTTTTATC+TGG + chr6_2:78966343-78966362 Msa0930150:CDS 30.0%
!!! TATCTGGTTTTATGTTGATG+AGG + chr6_2:78966359-78966378 Msa0930150:CDS 30.0%
! ATTCTTTTGCATTTTTGTGG+AGG + chr6_2:78966452-78966471 Msa0930150:exon 30.0%
! GAATCCTATTTTCTCACAAA+TGG - chr6_2:78966719-78966738 None:intergenic 30.0%
ATGTAACTAACTGAATCTGA+TGG - chr6_2:78966780-78966799 None:intergenic 30.0%
! ACATATTGAGTACTAGGTTT+TGG + chr6_2:78966796-78966815 Msa0930150:three_prime_UTR 30.0%
GAGTAGATAAAAAAGGAAGA+CGG - chr6_2:78967033-78967052 None:intergenic 30.0%
GGTAAGAGAGTAGATAAAAA+AGG - chr6_2:78967040-78967059 None:intergenic 30.0%
! TTTCTTTTCCACACATTTGT+TGG + chr6_2:78967072-78967091 Msa0930150:three_prime_UTR 30.0%
GAGATGTACAACACATGAAT+CGG - chr6_2:78964794-78964813 None:intergenic 35.0%
!!! GGTTGTTTTGAATGTCATCA+AGG - chr6_2:78964913-78964932 None:intergenic 35.0%
! CAATAGCATGCATACCTTTT+TGG - chr6_2:78964960-78964979 None:intergenic 35.0%
TATCTTTACGTAGGAAGTAG+AGG + chr6_2:78965192-78965211 Msa0930150:intron 35.0%
AAATGCAGCTAAGACAAGAA+AGG + chr6_2:78965234-78965253 Msa0930150:CDS 35.0%
AGCAGTAAAAATAAGCATCC+AGG - chr6_2:78965365-78965384 None:intergenic 35.0%
CTTAGCCACTTACATGAAAT+CGG + chr6_2:78965812-78965831 Msa0930150:intron 35.0%
TTAGCCACTTACATGAAATC+GGG + chr6_2:78965813-78965832 Msa0930150:intron 35.0%
TAACATTGTGATTTACCACC+GGG - chr6_2:78965893-78965912 None:intergenic 35.0%
TAGGCAAAAAGGATCGAAAA+CGG + chr6_2:78966162-78966181 Msa0930150:intron 35.0%
ATCGAAAACGGTGTATTTCT+TGG + chr6_2:78966174-78966193 Msa0930150:CDS 35.0%
GAGAACCTTCGAATAAAAGT+TGG + chr6_2:78966264-78966283 Msa0930150:CDS 35.0%
! AAGGTCCAACTTTTATTCGA+AGG - chr6_2:78966272-78966291 None:intergenic 35.0%
TCTCTGAGTTTCTGACTTAT+TGG + chr6_2:78966499-78966518 Msa0930150:three_prime_UTR 35.0%
GAAACAGTTGAAGTTCATTC+AGG + chr6_2:78966547-78966566 Msa0930150:three_prime_UTR 35.0%
ACCTAATGAGGGAAAAAGTT+TGG - chr6_2:78966857-78966876 None:intergenic 35.0%
ATGTCGTAACATCTTTACTG+TGG + chr6_2:78966927-78966946 Msa0930150:three_prime_UTR 35.0%
AATGCATTCCAACAAATGTG+TGG - chr6_2:78967083-78967102 None:intergenic 35.0%
GGAATGCATTTCGTCTATAA+TGG + chr6_2:78967093-78967112 Msa0930150:three_prime_UTR 35.0%
CAGCTAGCTACATTTGCAAA+TGG + chr6_2:78964742-78964761 Msa0930150:exon 40.0%
!! GTTGTTCTGAGAGACTTTGA+TGG - chr6_2:78964827-78964846 None:intergenic 40.0%
TGTCGTCTTGAACAACAAGT+GGG - chr6_2:78964934-78964953 None:intergenic 40.0%
TTGTCGTCTTGAACAACAAG+TGG - chr6_2:78964935-78964954 None:intergenic 40.0%
TCAAGACGACAATCCCAAAA+AGG + chr6_2:78964943-78964962 Msa0930150:CDS 40.0%
ACATGTCCATAAGCTCTTCA+AGG + chr6_2:78965033-78965052 Msa0930150:intron 40.0%
! AGGGTGTCAAGAAAAGAAGA+AGG - chr6_2:78965316-78965335 None:intergenic 40.0%
! TCTTCTTTTCTTGACACCCT+TGG + chr6_2:78965316-78965335 Msa0930150:CDS 40.0%
! TACGAGGTTGTGAGGATTTT+AGG + chr6_2:78965775-78965794 Msa0930150:intron 40.0%
TAGCCACTTACATGAAATCG+GGG + chr6_2:78965814-78965833 Msa0930150:intron 40.0%
TAACCCCGATTTCATGTAAG+TGG - chr6_2:78965820-78965839 None:intergenic 40.0%
AACATTGTGATTTACCACCG+GGG - chr6_2:78965892-78965911 None:intergenic 40.0%
! GTTATTTGGAATGGCTCTTG+TGG + chr6_2:78965909-78965928 Msa0930150:intron 40.0%
GGTGTATTTCTTGGACCTAT+CGG + chr6_2:78966183-78966202 Msa0930150:CDS 40.0%
AAACCTCTACAAATCAGCCT+TGG + chr6_2:78966294-78966313 Msa0930150:CDS 40.0%
ACAAATCAGCCTTGGACAAA+AGG + chr6_2:78966302-78966321 Msa0930150:CDS 40.0%
! CTATTTTCTCACAAATGGCC+GGG - chr6_2:78966714-78966733 None:intergenic 40.0%
! CCTATTTTCTCACAAATGGC+CGG - chr6_2:78966715-78966734 None:intergenic 40.0%
!!! CTAGGTTTTGGATTTGTTGC+TGG + chr6_2:78966808-78966827 Msa0930150:three_prime_UTR 40.0%
!! GCCAAACTTTTTCCCTCATT+AGG + chr6_2:78966853-78966872 Msa0930150:three_prime_UTR 40.0%
CAGCTAACTTCACCTAATGA+GGG - chr6_2:78966868-78966887 None:intergenic 40.0%
GCTGAAAGAATCTCTTCTGC+TGG - chr6_2:78965262-78965281 None:intergenic 45.0%
! TCTTTTCTTGACACCCTTGG+AGG + chr6_2:78965319-78965338 Msa0930150:CDS 45.0%
AATCTCTGAACAGCTGTGAG+AGG - chr6_2:78965508-78965527 None:intergenic 45.0%
!! GTGATGGTACCACTTTTACG+AGG + chr6_2:78965759-78965778 Msa0930150:intron 45.0%
!! ACCACTTTTACGAGGTTGTG+AGG + chr6_2:78965767-78965786 Msa0930150:intron 45.0%
TCCTCACAACCTCGTAAAAG+TGG - chr6_2:78965771-78965790 None:intergenic 45.0%
!! TGTCCAAGGCTGATTTGTAG+AGG - chr6_2:78966300-78966319 None:intergenic 45.0%
CCTTGGACAAAAGGAAGACA+GGG + chr6_2:78966311-78966330 Msa0930150:CDS 45.0%
AGACAGGGAACCAAGTACAA+AGG + chr6_2:78966326-78966345 Msa0930150:CDS 45.0%
AAAATGCAGTGCCTCCACTT+CGG - chr6_2:78966404-78966423 None:intergenic 45.0%
ATGCCCCTGCTGTAGAAATT+CGG + chr6_2:78966687-78966706 Msa0930150:intron 45.0%
CCGGCCATTTGTGAGAAAAT+AGG + chr6_2:78966712-78966731 Msa0930150:three_prime_UTR 45.0%
!! GGATTTGTTGCTGGCTGAAA+TGG + chr6_2:78966817-78966836 Msa0930150:three_prime_UTR 45.0%
GCAGCTAACTTCACCTAATG+AGG - chr6_2:78966869-78966888 None:intergenic 45.0%
TCTTGACACCCTTGGAGGAA+AGG + chr6_2:78965324-78965343 Msa0930150:CDS 50.0%
AGGGGAATCCTTTCCTCCAA+GGG - chr6_2:78965335-78965354 None:intergenic 50.0%
TTGGAGGAAAGGATTCCCCT+GGG + chr6_2:78965335-78965354 Msa0930150:CDS 50.0%
TAAGCATCCAGGTTCTCCCA+GGG - chr6_2:78965354-78965373 None:intergenic 50.0%
ATAAGCATCCAGGTTCTCCC+AGG - chr6_2:78965355-78965374 None:intergenic 50.0%
CATTTGAAGGCAGACTGTCG+TGG + chr6_2:78966214-78966233 Msa0930150:CDS 50.0%
GCCTTGGACAAAAGGAAGAC+AGG + chr6_2:78966310-78966329 Msa0930150:CDS 50.0%
! CCCTGTCTTCCTTTTGTCCA+AGG - chr6_2:78966314-78966333 None:intergenic 50.0%
GAGGAAATAGCTGTTGCTCG+AGG + chr6_2:78966378-78966397 Msa0930150:CDS 50.0%
!!! GAAGTGGAGGCACTGCATTT+TGG + chr6_2:78966403-78966422 Msa0930150:CDS 50.0%
!!! GAGGCACTGCATTTTGGTGT+CGG + chr6_2:78966409-78966428 Msa0930150:CDS 50.0%
!!! ATTTTGGTGTCGGTGTCGTC+AGG + chr6_2:78966419-78966438 Msa0930150:CDS 50.0%
!!! GGAGGCACTGCATTTTGTGT+CGG + chr6_2:78966470-78966489 Msa0930150:three_prime_UTR 50.0%
TGCCCCTGCTGTAGAAATTC+GGG + chr6_2:78966688-78966707 Msa0930150:intron 50.0%
CAGGGGAATCCTTTCCTCCA+AGG - chr6_2:78965336-78965355 None:intergenic 55.0%
CTTGGAGGAAAGGATTCCCC+TGG + chr6_2:78965334-78965353 Msa0930150:CDS 55.0%
AAGCATCCAGGTTCTCCCAG+GGG - chr6_2:78965353-78965372 None:intergenic 55.0%
GGTTTAGCACAAGTGGTCGG+TGG - chr6_2:78965871-78965890 None:intergenic 55.0%
CGGGGTTTAGCACAAGTGGT+CGG - chr6_2:78965874-78965893 None:intergenic 55.0%
CGACCACTTGTGCTAAACCC+CGG + chr6_2:78965872-78965891 Msa0930150:intron 55.0%
GGCCCGAATTTCTACAGCAG+GGG - chr6_2:78966693-78966712 None:intergenic 55.0%
GGGCCCGAATTTCTACAGCA+GGG - chr6_2:78966694-78966713 None:intergenic 55.0%
CTGCTGTAGAAATTCGGGCC+CGG + chr6_2:78966693-78966712 Msa0930150:intron 55.0%
AGGATTCCCCTGGGAGAACC+TGG + chr6_2:78965344-78965363 Msa0930150:CDS 60.0%
AGCACAAGTGGTCGGTGGCT+CGG - chr6_2:78965866-78965885 None:intergenic 60.0%
CCACCGGGGTTTAGCACAAG+TGG - chr6_2:78965878-78965897 None:intergenic 60.0%
CCACTTGTGCTAAACCCCGG+TGG + chr6_2:78965875-78965894 Msa0930150:intron 60.0%
CGGGCCCGAATTTCTACAGC+AGG - chr6_2:78966695-78966714 None:intergenic 60.0%
GCTGTTGCTCGAGGCCGAAG+TGG + chr6_2:78966387-78966406 Msa0930150:CDS 65.0%
GTTGCTCGAGGCCGAAGTGG+AGG + chr6_2:78966390-78966409 Msa0930150:CDS 65.0%
!! GCTCGGTGTGCAGGGTGCGT+GGG - chr6_2:78965849-78965868 None:intergenic 70.0%
!! GGTCGGTGGCTCGGTGTGCA+GGG - chr6_2:78965857-78965876 None:intergenic 70.0%
!! TGGTCGGTGGCTCGGTGTGC+AGG - chr6_2:78965858-78965877 None:intergenic 70.0%
!! GGCTCGGTGTGCAGGGTGCG+TGG - chr6_2:78965850-78965869 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 78964660 78967169 78964660 ID=Msa0930150;Name=Msa0930150
chr6_2 mRNA 78964660 78967169 78964660 ID=Msa0930150-mRNA-1;Parent=Msa0930150;Name=Msa0930150-mRNA-1;_AED=0.17;_eAED=0.17;_QI=101|1|1|1|0.75|0.6|5|584|244
chr6_2 exon 78964660 78964964 78964660 ID=Msa0930150-mRNA-1:exon:13429;Parent=Msa0930150-mRNA-1
chr6_2 exon 78965205 78965387 78965205 ID=Msa0930150-mRNA-1:exon:13430;Parent=Msa0930150-mRNA-1
chr6_2 exon 78965478 78965537 78965478 ID=Msa0930150-mRNA-1:exon:13431;Parent=Msa0930150-mRNA-1
chr6_2 exon 78966165 78966568 78966165 ID=Msa0930150-mRNA-1:exon:13432;Parent=Msa0930150-mRNA-1
chr6_2 exon 78966702 78967169 78966702 ID=Msa0930150-mRNA-1:exon:13433;Parent=Msa0930150-mRNA-1
chr6_2 five_prime_UTR 78964660 78964760 78964660 ID=Msa0930150-mRNA-1:five_prime_utr;Parent=Msa0930150-mRNA-1
chr6_2 CDS 78964761 78964964 78964761 ID=Msa0930150-mRNA-1:cds;Parent=Msa0930150-mRNA-1
chr6_2 CDS 78965205 78965387 78965205 ID=Msa0930150-mRNA-1:cds;Parent=Msa0930150-mRNA-1
chr6_2 CDS 78965478 78965537 78965478 ID=Msa0930150-mRNA-1:cds;Parent=Msa0930150-mRNA-1
chr6_2 CDS 78966165 78966452 78966165 ID=Msa0930150-mRNA-1:cds;Parent=Msa0930150-mRNA-1
chr6_2 three_prime_UTR 78966453 78966568 78966453 ID=Msa0930150-mRNA-1:three_prime_utr;Parent=Msa0930150-mRNA-1
chr6_2 three_prime_UTR 78966702 78967169 78966702 ID=Msa0930150-mRNA-1:three_prime_utr;Parent=Msa0930150-mRNA-1
Gene Sequence

>Msa0930150

ATGGCAATGAACTACTGTATACACACATCACCGATTCATGTGTTGTACATCTCATCTTTTAAACCATCAAAGTCTCTCAGAACAACAACAACAACAACAACAACAACAAAACATCATCATCATGTTCAAAGAACAAGAATAAGAGCAACCCTTGATGACATTCAAAACAACCCACTTGTTGTTCAAGACGACAATCCCAAAAAGGAAGTAGAGGAATGTGTGAAACTGCTTAAAAATGCAGCTAAGACAAGAAAGGTACCAGCAGAAGAGATTCTTTCAGCACTGTCTCTCATTGAGAAAGCAAAAATTGATCCTTCTTCTTTTCTTGACACCCTTGGAGGAAAGGATTCCCCTGGGAGAACCTGGATGCTTATTTTTACTGCTAAGAAAAAATTAGATGGTGGTGTATATTTTCCTCTCACAGCTGTTCAGAGATTTGATGCTGCTGCAAAAAGGATCGAAAACGGTGTATTTCTTGGACCTATCGGACAATTAACATTTGAAGGCAGACTGTCGTGGAAAAACAGAATATTGTCTTTCATTTTTGAGAACCTTCGAATAAAAGTTGGACCTTTAAAACCTCTACAAATCAGCCTTGGACAAAAGGAAGACAGGGAACCAAGTACAAAGGATCCATTTTTTATCTGGTTTTATGTTGATGAGGAAATAGCTGTTGCTCGAGGCCGAAGTGGAGGCACTGCATTTTGGTGTCGGTGTCGTCAGGTTGATATTTGA

Protein sequence

>Msa0930150

MAMNYCIHTSPIHVLYISSFKPSKSLRTTTTTTTTTKHHHHVQRTRIRATLDDIQNNPLVVQDDNPKKEVEECVKLLKNAAKTRKVPAEEILSALSLIEKAKIDPSSFLDTLGGKDSPGRTWMLIFTAKKKLDGGVYFPLTAVQRFDAAAKRIENGVFLGPIGQLTFEGRLSWKNRILSFIFENLRIKVGPLKPLQISLGQKEDREPSTKDPFFIWFYVDEEIAVARGRSGGTAFWCRCRQVDI*