AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0584250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0584250 MtrunA17_Chr4g0027001 95.082 244 11 1 1 243 1 244 4.55e-174 478
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0584250 AT3G44620.1 64.655 232 65 4 23 237 8 239 5.26e-98 286
Msa0584250 AT3G44620.2 58.824 255 65 5 23 237 8 262 2.70e-92 272
Msa0584250 AT3G44485.1 53.333 60 22 1 178 231 5 64 5.38e-11 57.4

Find 76 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCATTTGTGACTTAATTCT+TGG 0.152433 4_2:+3433543 None:intergenic
AATTCACATTGTCATATTAT+TGG 0.172149 4_2:+3433216 None:intergenic
TGGGAATATTTAACATGTTC+AGG 0.219183 4_2:-3433326 Msa0584250:three_prime_UTR
TCAAAATATCACTTGATAAT+TGG 0.220024 4_2:+3433358 None:intergenic
AATCCATGGCTTCTATATAT+TGG 0.226052 4_2:-3433586 Msa0584250:three_prime_UTR
AAGGAAATGGAAGAAGATTT+TGG 0.229242 4_2:+3436062 None:intergenic
GGATCTTCTGGCTATTAAAA+AGG 0.238113 4_2:+3433681 None:intergenic
TATATAGAAGCCATGGATTT+AGG 0.251890 4_2:+3433590 None:intergenic
ATCATTGCTGGATAGCATTT+TGG 0.270039 4_2:-3433735 Msa0584250:CDS
AAATAAATGGAAAAGAATAA+AGG 0.303449 4_2:-3433285 Msa0584250:three_prime_UTR
TTGGGTTTGAAGAGAGGAAT+TGG 0.313647 4_2:+3436129 None:intergenic
GAATGAAGAATGGGACATTT+GGG 0.319906 4_2:+3436111 None:intergenic
ACCTGAAGATGCACACAAAA+AGG 0.322490 4_2:-3435251 Msa0584250:intron
AATCCCAAGATTGGATCTTC+TGG 0.327565 4_2:+3433669 None:intergenic
GGAATGAAGAATGGGACATT+TGG 0.333230 4_2:+3436110 None:intergenic
TCCGTTCTCTTTGTGTGTCT+TGG 0.340599 4_2:-3435963 Msa0584250:CDS
TGCATTGTACCCAATCAAAT+TGG 0.346312 4_2:-3433392 Msa0584250:intron
ATCCATGGCTTCTATATATT+GGG 0.357423 4_2:-3433585 Msa0584250:three_prime_UTR
ACAAAATCAGAAGGCTTGAT+TGG 0.384101 4_2:+3435464 None:intergenic
GGCAAAATGGTAAATTAGTA+AGG 0.385409 4_2:+3436159 None:intergenic
TGGGTTTGAAGAGAGGAATT+GGG 0.389874 4_2:+3436130 None:intergenic
AGGAGAGGGTCCAATTTGAT+TGG 0.390326 4_2:+3433382 None:intergenic
TTCAGATAACTTCAATTTCA+AGG 0.407069 4_2:-3435487 Msa0584250:CDS
AATAAATGGAAAAGAATAAA+GGG 0.408842 4_2:-3433284 Msa0584250:three_prime_UTR
TGCTGAGTCTCAGTATTCAA+TGG 0.412548 4_2:+3433485 None:intergenic
TTCTCCGATTCAAGCTTCAA+TGG 0.416534 4_2:-3436024 Msa0584250:CDS
AATTGGGAAGAGTGGCAAAA+TGG 0.422646 4_2:+3436146 None:intergenic
TATTTCTCTGCAACCAATTG+AGG 0.423733 4_2:+3436215 None:intergenic
AGATGCTTGTGAATCATTGC+TGG 0.423871 4_2:-3433747 Msa0584250:CDS
TTGTGTGCATCTTCAGGTAA+AGG 0.430130 4_2:+3435256 None:intergenic
GTGAAAACACCTTCAGCAGC+TGG 0.442462 4_2:+3435924 None:intergenic
GTTTGATCTTATTCTTGCTA+TGG 0.444378 4_2:-3435438 Msa0584250:CDS
TGGGATTAAGCTGTAGAGAT+TGG 0.445393 4_2:-3433653 Msa0584250:three_prime_UTR
CTACAGCTTAATCCCAAGAT+TGG 0.448897 4_2:+3433660 None:intergenic
ATAGCCAGAAGATCCAATCT+TGG 0.451431 4_2:-3433673 Msa0584250:three_prime_UTR
GTTTCATTGTCCTAAATCCA+TGG 0.454744 4_2:-3433600 Msa0584250:three_prime_UTR
ATTGATTCTGCTGGTACAAT+CGG 0.457565 4_2:-3435861 Msa0584250:CDS
AAGAGAGGAATTGGGAAGAG+TGG 0.459268 4_2:+3436138 None:intergenic
ATCTAGTGGAGCTCCTCAAT+TGG 0.463965 4_2:-3436228 Msa0584250:five_prime_UTR
TTGTGACTTAATTCTTGGAT+AGG 0.464447 4_2:+3433548 None:intergenic
TAGCCAGAAGATCCAATCTT+GGG 0.466253 4_2:-3433672 Msa0584250:three_prime_UTR
GAAGTCCCGGATCCTTACTA+TGG 0.472238 4_2:-3434787 Msa0584250:CDS
GGGAATATTTAACATGTTCA+GGG 0.474221 4_2:-3433325 Msa0584250:three_prime_UTR
AAGTTCAGAATTGATTCTGC+TGG 0.475953 4_2:-3435870 Msa0584250:CDS
GGTCCACCATAGTAAGGATC+CGG 0.483919 4_2:+3434781 None:intergenic
CCTTGAGGTCCACCATAGTA+AGG 0.486542 4_2:+3434775 None:intergenic
GCTGAGTCTCAGTATTCAAT+GGG 0.486993 4_2:+3433486 None:intergenic
GGAGAGGGTCCAATTTGATT+GGG 0.492590 4_2:+3433383 None:intergenic
GGACATTTGGGTTTGAAGAG+AGG 0.496425 4_2:+3436123 None:intergenic
CCTTACTATGGTGGACCTCA+AGG 0.500453 4_2:-3434775 Msa0584250:CDS
GAAGCCATTGAAGCTTGAAT+CGG 0.524909 4_2:+3436020 None:intergenic
CACTTGATAATTGGAAGGAG+AGG 0.527441 4_2:+3433367 None:intergenic
CACACAAAGAGAACGGAGAA+TGG 0.528767 4_2:+3435969 None:intergenic
GCATGATGAAACCGAAGTCC+CGG 0.534176 4_2:-3434800 Msa0584250:CDS
TGTGTGAAAGGAATGAAGAA+TGG 0.535477 4_2:+3436101 None:intergenic
GATTAAGCTGTAGAGATTGG+CGG 0.539780 4_2:-3433650 Msa0584250:three_prime_UTR
TTCCCAATATATAGAAGCCA+TGG 0.544506 4_2:+3433583 None:intergenic
GTGTGAAAGGAATGAAGAAT+GGG 0.555627 4_2:+3436102 None:intergenic
ATGAAGCTGATTCAAGAATG+AGG 0.561617 4_2:-3435532 Msa0584250:CDS
AATATCACTTGATAATTGGA+AGG 0.564784 4_2:+3433362 None:intergenic
TGTAGAAGCCCAGCTGCTGA+AGG 0.566668 4_2:-3435933 Msa0584250:CDS
ACTTAATTCTTGGATAGGCA+TGG 0.571692 4_2:+3433553 None:intergenic
ACTCAGCAAATTATATAGCA+TGG 0.576748 4_2:-3433470 Msa0584250:three_prime_UTR
TGAAAACACCTTCAGCAGCT+GGG 0.579306 4_2:+3435925 None:intergenic
ATAGTAAGGATCCGGGACTT+CGG 0.579621 4_2:+3434789 None:intergenic
ACTTGATAATTGGAAGGAGA+GGG 0.580230 4_2:+3433368 None:intergenic
GTCCACCATAGTAAGGATCC+GGG 0.586473 4_2:+3434782 None:intergenic
TTGAATGTAAAGTTATCTAG+TGG 0.587388 4_2:-3436242 Msa0584250:five_prime_UTR
TGAAGCTGATTCAAGAATGA+GGG 0.590846 4_2:-3435531 Msa0584250:CDS
TCAAACTCAACAAAATCAGA+AGG 0.591117 4_2:+3435455 None:intergenic
GTCCCGGATCCTTACTATGG+TGG 0.618032 4_2:-3434784 Msa0584250:CDS
ACCAAGACACACAAAGAGAA+CGG 0.628894 4_2:+3435962 None:intergenic
ATGAAGACACTATACACTGA+CGG 0.640732 4_2:-3436188 Msa0584250:CDS
GCTATGGACAAGCAAAACAA+AGG 0.649274 4_2:-3435422 Msa0584250:intron
TATACCTTCTCAAAACCTTG+AGG 0.655564 4_2:+3434760 None:intergenic
TTTAGGACAATGAAACAACA+AGG 0.714835 4_2:+3433607 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTGTTAATTTTTTTTAATTT+CGG - chr4_2:3433725-3433744 Msa0584250:CDS 10.0%
!!! AGAAAAGTGATTATTTTTTA+AGG + chr4_2:3433411-3433430 None:intergenic 15.0%
!!! AAAATGTTGTTTTTTTATGA+TGG - chr4_2:3433677-3433696 Msa0584250:three_prime_UTR 15.0%
!!! AAATGTTGTTTTTTTATGAT+GGG - chr4_2:3433678-3433697 Msa0584250:three_prime_UTR 15.0%
!!! CTCTTTTTATTAAATTGTAA+TGG - chr4_2:3434105-3434124 Msa0584250:intron 15.0%
!!! ATAAAATTTTCATTTTTCCT+TGG + chr4_2:3434419-3434438 None:intergenic 15.0%
!! AAATAAATGGAAAAGAATAA+AGG - chr4_2:3436166-3436185 Msa0584250:CDS 15.0%
!! AATAAATGGAAAAGAATAAA+GGG - chr4_2:3436167-3436186 Msa0584250:CDS 15.0%
!!! GTGATTATTTTTTAAGGAAA+TGG + chr4_2:3433405-3433424 None:intergenic 20.0%
!!! TTGATTTTTTTTGTTGTTGA+AGG - chr4_2:3433893-3433912 Msa0584250:intron 20.0%
!!! TGATTTTTTTTGTTGTTGAA+GGG - chr4_2:3433894-3433913 Msa0584250:intron 20.0%
!! AAAACAAAAAAACAACAACA+AGG + chr4_2:3434132-3434151 None:intergenic 20.0%
!!! TTGTTGTTTTTTTGTTTTAG+AGG - chr4_2:3434134-3434153 Msa0584250:intron 20.0%
!!! AGTTTTTTTTTTTCTCTTTC+TGG - chr4_2:3434457-3434476 Msa0584250:intron 20.0%
!! TATTCTTTATGATAGGTTAT+TGG - chr4_2:3434712-3434731 Msa0584250:intron 20.0%
!!! ATGATAATATTTTCTGTCAT+TGG - chr4_2:3435121-3435140 Msa0584250:intron 20.0%
!! ATTGCATATATTCTAATATG+AGG - chr4_2:3435144-3435163 Msa0584250:intron 20.0%
!!! CTTCTAAAGACATTTTAAAT+TGG - chr4_2:3435396-3435415 Msa0584250:intron 20.0%
!!! AGAATCAAAAAACTACATTT+TGG - chr4_2:3435469-3435488 Msa0584250:CDS 20.0%
!!! TGTTTTCAAATGATAATATG+TGG + chr4_2:3435597-3435616 None:intergenic 20.0%
!!! TCAAAATATCACTTGATAAT+TGG + chr4_2:3436096-3436115 None:intergenic 20.0%
!!! GTATGAGAGTTTTAAATAAA+TGG - chr4_2:3436153-3436172 Msa0584250:CDS 20.0%
!!! ACTTTTTTTATTGTAACTAG+AGG - chr4_2:3436190-3436209 Msa0584250:CDS 20.0%
!! AATTCACATTGTCATATTAT+TGG + chr4_2:3436238-3436257 None:intergenic 20.0%
! TTGAATGTAAAGTTATCTAG+TGG - chr4_2:3433209-3433228 Msa0584250:three_prime_UTR 25.0%
!!! AGATTTTGGTGTTAATTTTC+TGG + chr4_2:3433378-3433397 None:intergenic 25.0%
!! AATTTCGGAATTGATTCTAT+TGG - chr4_2:3433740-3433759 Msa0584250:CDS 25.0%
! TACAATCAATTATCATGAAG+TGG - chr4_2:3433763-3433782 Msa0584250:CDS 25.0%
! ACAATCAATTATCATGAAGT+GGG - chr4_2:3433764-3433783 Msa0584250:CDS 25.0%
!!! TTTTTGGGTTGTTTTTATGA+TGG - chr4_2:3433847-3433866 Msa0584250:intron 25.0%
!!! TTTTGGGTTGTTTTTATGAT+GGG - chr4_2:3433848-3433867 Msa0584250:intron 25.0%
! TTCAGATAACTTCAATTTCA+AGG - chr4_2:3433964-3433983 Msa0584250:intron 25.0%
! GAGATGTTATAATCTGAATT+TGG - chr4_2:3434060-3434079 Msa0584250:intron 25.0%
! AATCTGAATTTGGTTGTTTA+TGG - chr4_2:3434070-3434089 Msa0584250:intron 25.0%
!!! TTTTGTTTTAGAGGACATAT+TGG - chr4_2:3434143-3434162 Msa0584250:intron 25.0%
!! TTGTTCTAAATCGTATATTG+TGG - chr4_2:3434343-3434362 Msa0584250:intron 25.0%
!!! TTTTTTTTTCTCTTTCTGGT+AGG - chr4_2:3434461-3434480 Msa0584250:intron 25.0%
! TTGTTAGACAACCTAAATTA+AGG - chr4_2:3434498-3434517 Msa0584250:intron 25.0%
!! GAAGGTATATTCTTTATGAT+AGG - chr4_2:3434705-3434724 Msa0584250:intron 25.0%
!! ATGATTAGTTGATTTCAGTT+AGG + chr4_2:3435087-3435106 None:intergenic 25.0%
! TGAAATCAACTAATCATAGT+TGG - chr4_2:3435090-3435109 Msa0584250:intron 25.0%
! ATTCTAATATGAGGAATACT+AGG - chr4_2:3435153-3435172 Msa0584250:intron 25.0%
! ATATTGAGTGAAATTCATGT+AGG - chr4_2:3435200-3435219 Msa0584250:intron 25.0%
!!! CTAACACTCACTTTTTTATT+GGG + chr4_2:3435280-3435299 None:intergenic 25.0%
!!! TCTAACACTCACTTTTTTAT+TGG + chr4_2:3435281-3435300 None:intergenic 25.0%
!!! AATTTTGCTTTTGCATTTCT+TGG - chr4_2:3435420-3435439 Msa0584250:intron 25.0%
!!! ATTTTGCTTTTGCATTTCTT+GGG - chr4_2:3435421-3435440 Msa0584250:intron 25.0%
!! TGATTTGTCATAATGTACAT+CGG - chr4_2:3435544-3435563 Msa0584250:intron 25.0%
! ACATTAGAAGAATGATTACA+AGG - chr4_2:3436033-3436052 Msa0584250:CDS 25.0%
!! AATATCACTTGATAATTGGA+AGG + chr4_2:3436092-3436111 None:intergenic 25.0%
!!! TTATCAAGTGATATTTTGAC+TGG - chr4_2:3436097-3436116 Msa0584250:CDS 25.0%
!!! TGATATTTTGACTGGTAAAT+TGG - chr4_2:3436105-3436124 Msa0584250:CDS 25.0%
!!! GATATTTTGACTGGTAAATT+GGG - chr4_2:3436106-3436125 Msa0584250:CDS 25.0%
GGCAAAATGGTAAATTAGTA+AGG + chr4_2:3433295-3433314 None:intergenic 30.0%
!! AATTTTCTGGTATGTGTGAA+AGG + chr4_2:3433365-3433384 None:intergenic 30.0%
! AAGGAAATGGAAGAAGATTT+TGG + chr4_2:3433392-3433411 None:intergenic 30.0%
TCAAACTCAACAAAATCAGA+AGG + chr4_2:3433999-3434018 None:intergenic 30.0%
GTTTGATCTTATTCTTGCTA+TGG - chr4_2:3434013-3434032 Msa0584250:intron 30.0%
! TATTGGAAGCTTTTAGTAGA+TGG - chr4_2:3434160-3434179 Msa0584250:intron 30.0%
CGTATATTGTGGAACAATTA+TGG - chr4_2:3434354-3434373 Msa0584250:intron 30.0%
TTTGACAACATTGAATTCCA+AGG - chr4_2:3434399-3434418 Msa0584250:intron 30.0%
! GTCTAACAAAAACTTGCTTT+AGG + chr4_2:3434487-3434506 None:intergenic 30.0%
!! AATATGTTTTTCAACCCTGA+TGG - chr4_2:3434580-3434599 Msa0584250:intron 30.0%
ATTCAAGACTATCTTTGCAT+CGG + chr4_2:3434783-3434802 None:intergenic 30.0%
TGGATCTGACTACTTTATAT+GGG + chr4_2:3435246-3435265 None:intergenic 30.0%
TTTATTGGGTGATATTCATG+TGG + chr4_2:3435266-3435285 None:intergenic 30.0%
GATTTGTCATAATGTACATC+GGG - chr4_2:3435545-3435564 Msa0584250:intron 30.0%
!! CTGGCTATTAAAAAGGTATT+AGG + chr4_2:3435766-3435785 None:intergenic 30.0%
! TTTAGGACAATGAAACAACA+AGG + chr4_2:3435847-3435866 None:intergenic 30.0%
TATATAGAAGCCATGGATTT+AGG + chr4_2:3435864-3435883 None:intergenic 30.0%
AATCCATGGCTTCTATATAT+TGG - chr4_2:3435865-3435884 Msa0584250:CDS 30.0%
ATCCATGGCTTCTATATATT+GGG - chr4_2:3435866-3435885 Msa0584250:CDS 30.0%
TTGTGACTTAATTCTTGGAT+AGG + chr4_2:3435906-3435925 None:intergenic 30.0%
ACTCAGCAAATTATATAGCA+TGG - chr4_2:3435981-3436000 Msa0584250:CDS 30.0%
TGGGAATATTTAACATGTTC+AGG - chr4_2:3436125-3436144 Msa0584250:CDS 30.0%
GGGAATATTTAACATGTTCA+GGG - chr4_2:3436126-3436145 Msa0584250:CDS 30.0%
TATTTCTCTGCAACCAATTG+AGG + chr4_2:3433239-3433258 None:intergenic 35.0%
ATGAAGACACTATACACTGA+CGG - chr4_2:3433263-3433282 Msa0584250:three_prime_UTR 35.0%
GAATGAAGAATGGGACATTT+GGG + chr4_2:3433343-3433362 None:intergenic 35.0%
GTGTGAAAGGAATGAAGAAT+GGG + chr4_2:3433352-3433371 None:intergenic 35.0%
TGTGTGAAAGGAATGAAGAA+TGG + chr4_2:3433353-3433372 None:intergenic 35.0%
!! ACAGACTTGGTGAAAAAAAG+AGG - chr4_2:3433548-3433567 Msa0584250:three_prime_UTR 35.0%
! AAGTTCAGAATTGATTCTGC+TGG - chr4_2:3433581-3433600 Msa0584250:three_prime_UTR 35.0%
! ATTGATTCTGCTGGTACAAT+CGG - chr4_2:3433590-3433609 Msa0584250:three_prime_UTR 35.0%
TACAATCGGTTATCATGAAG+TGG - chr4_2:3433604-3433623 Msa0584250:three_prime_UTR 35.0%
ACAATCGGTTATCATGAAGT+GGG - chr4_2:3433605-3433624 Msa0584250:three_prime_UTR 35.0%
! ATGAAGCTGATTCAAGAATG+AGG - chr4_2:3433919-3433938 Msa0584250:intron 35.0%
! TGAAGCTGATTCAAGAATGA+GGG - chr4_2:3433920-3433939 Msa0584250:intron 35.0%
ACAAAATCAGAAGGCTTGAT+TGG + chr4_2:3433990-3434009 None:intergenic 35.0%
TCACGGTCAACACAAATATA+AGG + chr4_2:3434534-3434553 None:intergenic 35.0%
AGCAACAAAAGTTCTACTCA+CGG + chr4_2:3434551-3434570 None:intergenic 35.0%
TATACCTTCTCAAAACCTTG+AGG + chr4_2:3434694-3434713 None:intergenic 35.0%
TAGCATGATACTGACATACA+CGG - chr4_2:3434896-3434915 Msa0584250:intron 35.0%
CTAGTGAAATAGTTGAGTGT+TGG - chr4_2:3435016-3435035 Msa0584250:intron 35.0%
!!! TGGGATCCATTTTAAAGTGT+GGG + chr4_2:3435227-3435246 None:intergenic 35.0%
!!! ATGGGATCCATTTTAAAGTG+TGG + chr4_2:3435228-3435247 None:intergenic 35.0%
GTGGATCTGACTACTTTATA+TGG + chr4_2:3435247-3435266 None:intergenic 35.0%
! ATCATTGCTGGATAGCATTT+TGG - chr4_2:3435716-3435735 Msa0584250:intron 35.0%
! GGATCTTCTGGCTATTAAAA+AGG + chr4_2:3435773-3435792 None:intergenic 35.0%
GTTTCATTGTCCTAAATCCA+TGG - chr4_2:3435851-3435870 Msa0584250:CDS 35.0%
TTCCCAATATATAGAAGCCA+TGG + chr4_2:3435871-3435890 None:intergenic 35.0%
ACTTAATTCTTGGATAGGCA+TGG + chr4_2:3435901-3435920 None:intergenic 35.0%
CGCATTTGTGACTTAATTCT+TGG + chr4_2:3435911-3435930 None:intergenic 35.0%
TGCATTGTACCCAATCAAAT+TGG - chr4_2:3436059-3436078 Msa0584250:CDS 35.0%
! ACTTGATAATTGGAAGGAGA+GGG + chr4_2:3436086-3436105 None:intergenic 35.0%
AATTGGGAAGAGTGGCAAAA+TGG + chr4_2:3433308-3433327 None:intergenic 40.0%
TGGGTTTGAAGAGAGGAATT+GGG + chr4_2:3433324-3433343 None:intergenic 40.0%
TTGGGTTTGAAGAGAGGAAT+TGG + chr4_2:3433325-3433344 None:intergenic 40.0%
GGAATGAAGAATGGGACATT+TGG + chr4_2:3433344-3433363 None:intergenic 40.0%
TTCTCCGATTCAAGCTTCAA+TGG - chr4_2:3433427-3433446 Msa0584250:intron 40.0%
GAAGCCATTGAAGCTTGAAT+CGG + chr4_2:3433434-3433453 None:intergenic 40.0%
ACCAAGACACACAAAGAGAA+CGG + chr4_2:3433492-3433511 None:intergenic 40.0%
!!! TGAAGGTGTTTTCACAGACT+TGG - chr4_2:3433535-3433554 Msa0584250:three_prime_UTR 40.0%
GCTATGGACAAGCAAAACAA+AGG - chr4_2:3434029-3434048 Msa0584250:intron 40.0%
TGGACAAGCAAAACAAAGGT+AGG - chr4_2:3434033-3434052 Msa0584250:intron 40.0%
GGACAAGCAAAACAAAGGTA+GGG - chr4_2:3434034-3434053 Msa0584250:intron 40.0%
GACAAGCAAAACAAAGGTAG+GGG - chr4_2:3434035-3434054 Msa0584250:intron 40.0%
TTGTGTGCATCTTCAGGTAA+AGG + chr4_2:3434198-3434217 None:intergenic 40.0%
ACCTGAAGATGCACACAAAA+AGG - chr4_2:3434200-3434219 Msa0584250:intron 40.0%
! ACCTTTTTGTGTGCATCTTC+AGG + chr4_2:3434204-3434223 None:intergenic 40.0%
AAATCGAACCCCTTTATCCA+AGG - chr4_2:3434240-3434259 Msa0584250:intron 40.0%
ACAACACTGCCTTGGATAAA+GGG + chr4_2:3434252-3434271 None:intergenic 40.0%
TTGTCAATTGCGGACAATAG+CGG - chr4_2:3434268-3434287 Msa0584250:intron 40.0%
GCTACAACATTCTAGCGTAT+CGG + chr4_2:3434306-3434325 None:intergenic 40.0%
GCGGTTCAAGTCCTTAATTT+AGG + chr4_2:3434512-3434531 None:intergenic 40.0%
CGGTCAACACAAATATAAGG+CGG + chr4_2:3434531-3434550 None:intergenic 40.0%
!! ATAGGTTATTGGTTCACCCT+TGG - chr4_2:3434723-3434742 Msa0584250:intron 40.0%
ACCCTTGGTTCATCTTTGTA+GGG - chr4_2:3434738-3434757 Msa0584250:intron 40.0%
TCCCTACAAAGATGAACCAA+GGG + chr4_2:3434742-3434761 None:intergenic 40.0%
! ACGCCTTTCATGAAAAGTGT+CGG + chr4_2:3434855-3434874 None:intergenic 40.0%
!!! GGGATCCATTTTAAAGTGTG+GGG + chr4_2:3435226-3435245 None:intergenic 40.0%
GTTCTTTGCATTCGCAATTC+TGG - chr4_2:3435319-3435338 Msa0584250:intron 40.0%
AGATGCTTGTGAATCATTGC+TGG - chr4_2:3435704-3435723 Msa0584250:intron 40.0%
ATAGCCAGAAGATCCAATCT+TGG - chr4_2:3435778-3435797 Msa0584250:intron 40.0%
TAGCCAGAAGATCCAATCTT+GGG - chr4_2:3435779-3435798 Msa0584250:intron 40.0%
AATCCCAAGATTGGATCTTC+TGG + chr4_2:3435785-3435804 None:intergenic 40.0%
CTACAGCTTAATCCCAAGAT+TGG + chr4_2:3435794-3435813 None:intergenic 40.0%
TGGGATTAAGCTGTAGAGAT+TGG - chr4_2:3435798-3435817 Msa0584250:intron 40.0%
GATTAAGCTGTAGAGATTGG+CGG - chr4_2:3435801-3435820 Msa0584250:intron 40.0%
GCTGAGTCTCAGTATTCAAT+GGG + chr4_2:3435968-3435987 None:intergenic 40.0%
TGCTGAGTCTCAGTATTCAA+TGG + chr4_2:3435969-3435988 None:intergenic 40.0%
! CACTTGATAATTGGAAGGAG+AGG + chr4_2:3436087-3436106 None:intergenic 40.0%
ATCTAGTGGAGCTCCTCAAT+TGG - chr4_2:3433223-3433242 Msa0584250:three_prime_UTR 45.0%
AAGAGAGGAATTGGGAAGAG+TGG + chr4_2:3433316-3433335 None:intergenic 45.0%
! GGACATTTGGGTTTGAAGAG+AGG + chr4_2:3433331-3433350 None:intergenic 45.0%
CACACAAAGAGAACGGAGAA+TGG + chr4_2:3433485-3433504 None:intergenic 45.0%
TCCGTTCTCTTTGTGTGTCT+TGG - chr4_2:3433488-3433507 Msa0584250:three_prime_UTR 45.0%
TGAAAACACCTTCAGCAGCT+GGG + chr4_2:3433529-3433548 None:intergenic 45.0%
CAACACTGCCTTGGATAAAG+GGG + chr4_2:3434251-3434270 None:intergenic 45.0%
GACAACACTGCCTTGGATAA+AGG + chr4_2:3434253-3434272 None:intergenic 45.0%
CAAGGCAGTGTTGTCAATTG+CGG - chr4_2:3434258-3434277 Msa0584250:intron 45.0%
TTCAACCCTGATGGAGAGTT+TGG - chr4_2:3434589-3434608 Msa0584250:intron 45.0%
TCAACCCTGATGGAGAGTTT+GGG - chr4_2:3434590-3434609 Msa0584250:intron 45.0%
ATAGTAAGGATCCGGGACTT+CGG + chr4_2:3434665-3434684 None:intergenic 45.0%
!!! TGGACCTCAAGGTTTTGAGA+AGG - chr4_2:3434687-3434706 Msa0584250:intron 45.0%
CACCCTTGGTTCATCTTTGT+AGG - chr4_2:3434737-3434756 Msa0584250:intron 45.0%
CTCCCTACAAAGATGAACCA+AGG + chr4_2:3434743-3434762 None:intergenic 45.0%
!! GCACCGACACTTTTCATGAA+AGG - chr4_2:3434849-3434868 Msa0584250:intron 45.0%
! ATGTGTCACTGTCGTGTCTA+GGG - chr4_2:3434965-3434984 Msa0584250:intron 45.0%
CAAGCAATGAAAGACCGACA+CGG + chr4_2:3434991-3435010 None:intergenic 45.0%
! GTAGGCCCCACACTTTAAAA+TGG - chr4_2:3435218-3435237 Msa0584250:intron 45.0%
GCAATTCTGGTGCACATACT+TGG - chr4_2:3435332-3435351 Msa0584250:intron 45.0%
TGGTGCACATACTTGGTACT+TGG - chr4_2:3435339-3435358 Msa0584250:intron 45.0%
CAAGCATATCTAACACCTGC+AGG + chr4_2:3435683-3435702 None:intergenic 45.0%
! GTAGAGATTGGCGGTTTTCA+TGG - chr4_2:3435810-3435829 Msa0584250:intron 45.0%
GGAGAGGGTCCAATTTGATT+GGG + chr4_2:3436071-3436090 None:intergenic 45.0%
AGGAGAGGGTCCAATTTGAT+TGG + chr4_2:3436072-3436091 None:intergenic 45.0%
!!! TAATTTTTTTTTTGTTTTTT+TGG - chr4_2:3433831-3433850 Msa0584250:intron 5.0%
!!! AATTTTTTTTTTGTTTTTTT+GGG - chr4_2:3433832-3433851 Msa0584250:intron 5.0%
GTGAAAACACCTTCAGCAGC+TGG + chr4_2:3433530-3433549 None:intergenic 50.0%
AGGGCAGCTTCAAAAAGACG+TGG - chr4_2:3433939-3433958 Msa0584250:intron 50.0%
GGGCAGCTTCAAAAAGACGT+GGG - chr4_2:3433940-3433959 Msa0584250:intron 50.0%
CGCAATTGACAACACTGCCT+TGG + chr4_2:3434260-3434279 None:intergenic 50.0%
CCATCCCAAACTCTCCATCA+GGG + chr4_2:3434597-3434616 None:intergenic 50.0%
ACCATCCCAAACTCTCCATC+AGG + chr4_2:3434598-3434617 None:intergenic 50.0%
GCATGATGAAACCGAAGTCC+CGG - chr4_2:3434651-3434670 Msa0584250:intron 50.0%
GAAGTCCCGGATCCTTACTA+TGG - chr4_2:3434664-3434683 Msa0584250:intron 50.0%
GTCCACCATAGTAAGGATCC+GGG + chr4_2:3434672-3434691 None:intergenic 50.0%
GGTCCACCATAGTAAGGATC+CGG + chr4_2:3434673-3434692 None:intergenic 50.0%
CCTTGAGGTCCACCATAGTA+AGG + chr4_2:3434679-3434698 None:intergenic 50.0%
!! CCTTACTATGGTGGACCTCA+AGG - chr4_2:3434676-3434695 Msa0584250:intron 50.0%
GTATCATGCTAGTGTCGTGC+TGG + chr4_2:3434887-3434906 None:intergenic 50.0%
CAGTGACACATCAACGACAC+TGG + chr4_2:3434956-3434975 None:intergenic 50.0%
! GATGTGTCACTGTCGTGTCT+AGG - chr4_2:3434964-3434983 Msa0584250:intron 50.0%
GATCATCATGTTGCACCTGC+AGG - chr4_2:3435665-3435684 Msa0584250:intron 50.0%
TGTAGAAGCCCAGCTGCTGA+AGG - chr4_2:3433518-3433537 Msa0584250:three_prime_UTR 55.0%
CCCTGATGGAGAGTTTGGGA+TGG - chr4_2:3434594-3434613 Msa0584250:intron 55.0%
! TGGAGAGTTTGGGATGGTGC+AGG - chr4_2:3434600-3434619 Msa0584250:intron 55.0%
GTCCCGGATCCTTACTATGG+TGG - chr4_2:3434667-3434686 Msa0584250:intron 55.0%
TCATGCTAGTGTCGTGCTGG+AGG + chr4_2:3434884-3434903 None:intergenic 55.0%
GCTAGTGTCGTGCTGGAGGT+TGG + chr4_2:3434880-3434899 None:intergenic 60.0%
! TGTCGTGTCTAGGGCCGTGT+CGG - chr4_2:3434974-3434993 Msa0584250:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 3433201 3436272 3433201 ID=Msa0584250;Name=Msa0584250
chr4_2 mRNA 3433201 3436272 3433201 ID=Msa0584250-mRNA-1;Parent=Msa0584250;Name=Msa0584250-mRNA-1;_AED=0.03;_eAED=0.03;_QI=62|1|1|1|0.8|0.66|6|483|243
chr4_2 exon 3433201 3433409 3433201 ID=Msa0584250-mRNA-1:exon:988;Parent=Msa0584250-mRNA-1
chr4_2 exon 3433432 3433786 3433432 ID=Msa0584250-mRNA-1:exon:987;Parent=Msa0584250-mRNA-1
chr4_2 exon 3434765 3434851 3434765 ID=Msa0584250-mRNA-1:exon:986;Parent=Msa0584250-mRNA-1
chr4_2 exon 3435252 3435319 3435252 ID=Msa0584250-mRNA-1:exon:985;Parent=Msa0584250-mRNA-1
chr4_2 exon 3435423 3435558 3435423 ID=Msa0584250-mRNA-1:exon:984;Parent=Msa0584250-mRNA-1
chr4_2 exon 3435851 3436272 3435851 ID=Msa0584250-mRNA-1:exon:983;Parent=Msa0584250-mRNA-1
chr4_2 five_prime_UTR 3436211 3436272 3436211 ID=Msa0584250-mRNA-1:five_prime_utr;Parent=Msa0584250-mRNA-1
chr4_2 CDS 3435851 3436210 3435851 ID=Msa0584250-mRNA-1:cds;Parent=Msa0584250-mRNA-1
chr4_2 CDS 3435423 3435558 3435423 ID=Msa0584250-mRNA-1:cds;Parent=Msa0584250-mRNA-1
chr4_2 CDS 3435252 3435319 3435252 ID=Msa0584250-mRNA-1:cds;Parent=Msa0584250-mRNA-1
chr4_2 CDS 3434765 3434851 3434765 ID=Msa0584250-mRNA-1:cds;Parent=Msa0584250-mRNA-1
chr4_2 CDS 3433706 3433786 3433706 ID=Msa0584250-mRNA-1:cds;Parent=Msa0584250-mRNA-1
chr4_2 three_prime_UTR 3433432 3433705 3433432 ID=Msa0584250-mRNA-1:three_prime_utr;Parent=Msa0584250-mRNA-1
chr4_2 three_prime_UTR 3433201 3433409 3433201 ID=Msa0584250-mRNA-1:three_prime_utr;Parent=Msa0584250-mRNA-1
Gene Sequence

>Msa0584250

ATGAAGACACTATACACTGACGGAACAAACCTTACTAATTTACCATTTTGCCACTCTTCCCAATTCCTCTCTTCAAACCCAAATGTCCCATTCTTCATTCCTTTCACACATACCAGAAAATTAACACCAAAATCTTCTTCCATTTCCTTAAAAAATAATCACTTTTCTCCGATTCAAGCTTCAATGGCTTCATCAACAGTCACAGAAGACACAAACAAACCATTCTCCGTTCTCTTTGTGTGTCTTGGTAACATCTGTAGAAGCCCAGCTGCTGAAGGTGTTTTCACAGACTTGGTGAAAAAAAGAGGTTTTGATTCGAAGTTCAGAATTGATTCTGCTGGTACAATCGGTTATCATGAAGGTAATGAAGCTGATTCAAGAATGAGGGCAGCTTCAAAAAGACGTGGGATTCAGATAACTTCAATTTCAAGGCCAATCAAGCCTTCTGATTTTGTTGAGTTTGATCTTATTCTTGCTATGGACAAGCAAAACAAAGAGGACATATTGGAAGCTTTTAGTAGATGGAAGTTTAGAGATCCTTTACCTGAAGATGCACACAAAAAGGTTAAGTTGATGTGCTCATATTGTAAGAAGCATGATGAAACCGAAGTCCCGGATCCTTACTATGGTGGACCTCAAGGTTTTGAGAAGGTGTTAGATATGCTTGAAGATGCTTGTGAATCATTGCTGGATAGCATTTTGGCAGAAAATAAACATATACAAGAATCCTAA

Protein sequence

>Msa0584250

MKTLYTDGTNLTNLPFCHSSQFLSSNPNVPFFIPFTHTRKLTPKSSSISLKNNHFSPIQASMASSTVTEDTNKPFSVLFVCLGNICRSPAAEGVFTDLVKKRGFDSKFRIDSAGTIGYHEGNEADSRMRAASKRRGIQITSISRPIKPSDFVEFDLILAMDKQNKEDILEAFSRWKFRDPLPEDAHKKVKLMCSYCKKHDETEVPDPYYGGPQGFEKVLDMLEDACESLLDSILAENKHIQES*