AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0512930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0512930 MtrunA17_Chr3g0119841 95.896 268 8 2 1 267 1 266 0.0 527
Msa0512930 MtrunA17_Chr1g0184911 37.727 220 136 1 43 262 40 258 4.97e-53 173
Msa0512930 MtrunA17_Chr7g0260531 46.746 169 89 1 94 262 80 247 6.11e-51 167
Msa0512930 MtrunA17_Chr1g0194531 33.468 248 136 7 23 261 17 244 6.21e-37 131
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0512930 AT1G64680.1 75.000 240 53 1 28 267 18 250 1.66e-134 380
Msa0512930 AT1G64680.2 76.684 193 38 1 28 220 18 203 2.31e-105 304
Msa0512930 AT1G03055.1 36.100 241 133 3 8 248 32 251 6.26e-49 162
Msa0512930 AT4G01995.3 41.176 153 83 4 108 256 66 215 4.24e-31 115
Msa0512930 AT4G01995.1 41.176 153 83 4 108 256 97 246 5.25e-31 116
Msa0512930 AT1G03055.2 29.775 178 104 3 7 184 31 187 3.30e-17 78.2

Find 77 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAAGGTTGGTTGGATATT+TGG 0.135539 3_4:+62970774 Msa0512930:CDS
TTCTCATTTGTTTGTAATAT+TGG 0.161737 3_4:-62973668 None:intergenic
ACTTATGAGTTTCTAGATTA+TGG 0.162339 3_4:-62970398 None:intergenic
TCTACCTGCATTTCTTTATA+TGG 0.188356 3_4:-62972672 None:intergenic
TTTCCTCTTGGAGCATATTT+TGG 0.212329 3_4:-62970572 None:intergenic
GTTATAGAAGTGGAGATAAA+TGG 0.222746 3_4:+62972628 Msa0512930:CDS
GAAAGGTTGGTTGGATATTT+GGG 0.230670 3_4:+62970775 Msa0512930:CDS
TAGAAACTCATAAGTATATT+TGG 0.258452 3_4:+62970406 Msa0512930:five_prime_UTR
CCATTTGCAGAGCCTGTAAT+AGG 0.265083 3_4:+62970728 Msa0512930:CDS
ATACTTGGAATCATTGTTAA+TGG 0.282259 3_4:-62973169 None:intergenic
TAGATTATGGATGGGTATAT+TGG 0.301563 3_4:-62970385 None:intergenic
TTCTCATGATTTCTACTTTG+AGG 0.336451 3_4:+62973604 Msa0512930:three_prime_UTR
TTAGGACATATACTTGAGTT+TGG 0.337599 3_4:-62973515 None:intergenic
ATGAGCTGTGATATGGTTTA+TGG 0.344676 3_4:+62973339 Msa0512930:CDS
TTATAGAAGTGGAGATAAAT+GGG 0.344984 3_4:+62972629 Msa0512930:CDS
TCCTCCAGGTGCGCCTGCTC+AGG 0.352565 3_4:+62970901 Msa0512930:CDS
ATCAGCATAGCAAGGTTGTT+TGG 0.360336 3_4:-62973397 None:intergenic
TCTGGTGAACCTGCTCCTTT+AGG 0.365720 3_4:+62970635 Msa0512930:CDS
CCTTTCTTCCACTGGCTAGT+TGG 0.368715 3_4:+62971814 Msa0512930:CDS
CTTCAAATGAAGGCGGGGTT+TGG 0.384590 3_4:-62973362 None:intergenic
TGAAGACATGAGCTGTGATA+TGG 0.412579 3_4:+62973332 Msa0512930:CDS
AATTGAGATTAACCGGCCTT+TGG 0.412665 3_4:-62973796 None:intergenic
AAATATGCTCCAAGAGGAAA+TGG 0.435825 3_4:+62970575 Msa0512930:CDS
AGCAAGGTTGTTTGGAGACT+GGG 0.442350 3_4:-62973389 None:intergenic
TCTGCTCATGATTGTAGCTT+AGG 0.444862 3_4:-62973533 None:intergenic
TAGCAAGGTTGTTTGGAGAC+TGG 0.446056 3_4:-62973390 None:intergenic
CCTATTACAGGCTCTGCAAA+TGG 0.450834 3_4:-62970728 None:intergenic
TCCACCTGAGCAGGCGCACC+TGG 0.454996 3_4:-62970905 None:intergenic
TGACAGTGCCTTTCTTCCAC+TGG 0.455282 3_4:+62971806 Msa0512930:CDS
ATGAGTTTCTAGATTATGGA+TGG 0.458081 3_4:-62970394 None:intergenic
AACTCTGCAGCCCATCTTGT+CGG 0.474565 3_4:-62971772 None:intergenic
CAACACATCCACTGTTCTCC+AGG 0.477413 3_4:-62973084 None:intergenic
ATCATGAGCAGACACTCCTT+TGG 0.478526 3_4:+62973544 Msa0512930:exon
GCAGTAGCACCATTTCCTCT+TGG 0.483001 3_4:-62970584 None:intergenic
AAAAGAAGGAAAAGAAAGGT+TGG 0.484991 3_4:+62970762 Msa0512930:CDS
AATTATTTCCACCGACAAGA+TGG 0.485076 3_4:+62971761 Msa0512930:CDS
CATTTGCAGAGCCTGTAATA+GGG 0.488770 3_4:+62970729 Msa0512930:CDS
CTTCTCTCTATGCTTCCTCC+AGG 0.491765 3_4:+62970887 Msa0512930:CDS
CCAACTAGCCAGTGGAAGAA+AGG 0.501151 3_4:-62971814 None:intergenic
GAAGGAAAAGAAAGGTTGGT+TGG 0.501209 3_4:+62970766 Msa0512930:CDS
GGTCGTCTTCAAATGAAGGC+GGG 0.508459 3_4:-62973368 None:intergenic
CAAGAGTGTGAATTAATCAA+TGG 0.519580 3_4:+62970508 Msa0512930:exon
TATTGTAATATATTTGTCAA+AGG 0.519655 3_4:+62973636 Msa0512930:three_prime_UTR
TCTATAATATCCACCTGAGC+AGG 0.524418 3_4:-62970914 None:intergenic
ATTATTTCCACCGACAAGAT+GGG 0.535916 3_4:+62971762 Msa0512930:CDS
TGTGGTATAGCTGAACCATC+TGG 0.549247 3_4:+62970617 Msa0512930:CDS
ACTGGGTCGTCTTCAAATGA+AGG 0.561598 3_4:-62973372 None:intergenic
CTGGCTAGTTGGTCCTTCTG+AGG 0.564292 3_4:+62971825 Msa0512930:CDS
AGTAACAAAATCACCTCAGA+AGG 0.568318 3_4:-62971838 None:intergenic
AAACTCATAAGTATATTTGG+TGG 0.577668 3_4:+62970409 Msa0512930:five_prime_UTR
AGTATACACTAATTCTGTCA+TGG 0.578832 3_4:-62973575 None:intergenic
AAAGGAGCAGGTTCACCAGA+TGG 0.579959 3_4:-62970632 None:intergenic
GTCGTCTTCAAATGAAGGCG+GGG 0.581705 3_4:-62973367 None:intergenic
TGAGTTTCTAGATTATGGAT+GGG 0.584413 3_4:-62970393 None:intergenic
ATTTATCAAGTACAAGCAGA+AGG 0.585320 3_4:+62970470 Msa0512930:five_prime_UTR
GCGTCCATATAAAGAAATGC+AGG 0.585636 3_4:+62972668 Msa0512930:CDS
TTTGGTGGAGTTATTAGCTG+AGG 0.595601 3_4:-62970554 None:intergenic
GCAAGATGAAAGCCAAAGGC+CGG 0.597747 3_4:+62973784 Msa0512930:three_prime_UTR
ACCTGAGCAGGCGCACCTGG+AGG 0.601220 3_4:-62970902 None:intergenic
CTGGAGAACAGTGGATGTGT+TGG 0.601316 3_4:+62973085 Msa0512930:CDS
TATGTACTAGGTTATAGAAG+TGG 0.602466 3_4:+62972618 Msa0512930:intron
TCTGCAGCCCATCTTGTCGG+TGG 0.616866 3_4:-62971769 None:intergenic
TGTCATGGAAAATTATCCAA+AGG 0.620810 3_4:-62973560 None:intergenic
GCAACAGCAAGTTGTTCGTG+AGG 0.628043 3_4:+62970862 Msa0512930:CDS
CGAAAAGAGTAATGTTGCGT+CGG 0.630829 3_4:+62970828 Msa0512930:CDS
TATAGAAGTGGAGATAAATG+GGG 0.632566 3_4:+62972630 Msa0512930:CDS
ATGTGCAAGATGAAAGCCAA+AGG 0.633519 3_4:+62973780 Msa0512930:three_prime_UTR
TTCAGCTATACCACAACGGA+TGG 0.634641 3_4:-62970609 None:intergenic
GAGTGTGAATTAATCAATGG+TGG 0.639064 3_4:+62970511 Msa0512930:exon
TTCAGGTACCTGGAGAACAG+TGG 0.643237 3_4:+62973076 Msa0512930:intron
GGGTCGTCTTCAAATGAAGG+CGG 0.644771 3_4:-62973369 None:intergenic
CCACCAAAATATGCTCCAAG+AGG 0.652709 3_4:+62970569 Msa0512930:CDS
TTACATATATCAGCATAGCA+AGG 0.671867 3_4:-62973405 None:intergenic
CAGAAGGACCAACTAGCCAG+TGG 0.676589 3_4:-62971822 None:intergenic
AATGGGGTGAAGCAAAAGAG+TGG 0.694674 3_4:+62972646 Msa0512930:CDS
GCTACTGCTACCATCCGTTG+TGG 0.697016 3_4:+62970599 Msa0512930:CDS
ATGGTTCAGCTATACCACAA+CGG 0.757452 3_4:-62970613 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAATATAAATTACATAAT+TGG - chr3_4:62971876-62971895 None:intergenic 10.0%
!! TATTATTAGAAAAACTTATA+GGG - chr3_4:62972565-62972584 None:intergenic 10.0%
!! ATATTATTAGAAAAACTTAT+AGG - chr3_4:62972566-62972585 None:intergenic 10.0%
!! TAAAAAAATCCAAAAAAAAT+TGG - chr3_4:62973248-62973267 None:intergenic 10.0%
!!! AATATGATTTTGCTATTTTT+TGG - chr3_4:62970449-62970468 None:intergenic 15.0%
!! TCAATATCAAAGTAAAAAAT+TGG + chr3_4:62972089-62972108 Msa0512930:intron 15.0%
!! TTAAAAATGACTAAAAATCA+AGG - chr3_4:62972283-62972302 None:intergenic 15.0%
!!! ATATTTTTTTTTTCTTGTTC+AGG + chr3_4:62973059-62973078 Msa0512930:intron 15.0%
!! TATTGTAATATATTTGTCAA+AGG + chr3_4:62973636-62973655 Msa0512930:three_prime_UTR 15.0%
!! TAGAAACTCATAAGTATATT+TGG + chr3_4:62970406-62970425 Msa0512930:five_prime_UTR 20.0%
!! AAAAAAAAGAAGGAAAAGAA+AGG + chr3_4:62970758-62970777 Msa0512930:CDS 20.0%
!! AGTATATAATTCAATAATCC+TGG - chr3_4:62971004-62971023 None:intergenic 20.0%
!! AGGATTATTGAATTATATAC+TGG + chr3_4:62971003-62971022 Msa0512930:intron 20.0%
!!! AAAATAAAGTCAAATGGTTT+TGG - chr3_4:62971109-62971128 None:intergenic 20.0%
!! CAAGATAAAATAAAGTCAAA+TGG - chr3_4:62971115-62971134 None:intergenic 20.0%
!! ATAATCCATTACTAGTAATA+TGG + chr3_4:62971429-62971448 Msa0512930:intron 20.0%
!! ACAAAATTGAATGATATGAA+AGG - chr3_4:62971457-62971476 None:intergenic 20.0%
!! TAAAAGTGAATTTATTGCTT+CGG - chr3_4:62971716-62971735 None:intergenic 20.0%
!! TAAACAAACACTAAATTGAT+AGG - chr3_4:62971900-62971919 None:intergenic 20.0%
!! AAAGTAAAAAATTGGAAGTT+AGG + chr3_4:62972097-62972116 Msa0512930:intron 20.0%
!!! TTTCTATTTGAAACTTTATG+AGG + chr3_4:62972473-62972492 Msa0512930:intron 20.0%
!! GTCATTGATATTTAGATTAT+TGG + chr3_4:62972595-62972614 Msa0512930:intron 20.0%
!! ATCAACAAAAATTCATTAGA+AGG - chr3_4:62973032-62973051 None:intergenic 20.0%
!! TTCATTAGTGAAAAAATCTT+GGG - chr3_4:62973140-62973159 None:intergenic 20.0%
!! ATTCATTAGTGAAAAAATCT+TGG - chr3_4:62973141-62973160 None:intergenic 20.0%
!!! GATTTTTTCACTAATGAATT+TGG + chr3_4:62973142-62973161 Msa0512930:CDS 20.0%
!! TTCTCATTTGTTTGTAATAT+TGG - chr3_4:62973671-62973690 None:intergenic 20.0%
!! ACTTATGAGTTTCTAGATTA+TGG - chr3_4:62970401-62970420 None:intergenic 25.0%
! AAACTCATAAGTATATTTGG+TGG + chr3_4:62970409-62970428 Msa0512930:five_prime_UTR 25.0%
! ATAAAAATCGTTATCAAGAG+AGG + chr3_4:62971253-62971272 Msa0512930:intron 25.0%
!! CAATTTTGTTGAATATGTAG+TGG + chr3_4:62971468-62971487 Msa0512930:intron 25.0%
! TATATAACAAGTTCACAAGT+TGG - chr3_4:62971618-62971637 None:intergenic 25.0%
!!! CTTGTGAACTTGTTATATAT+AGG + chr3_4:62971619-62971638 Msa0512930:intron 25.0%
! TTTCAAACTAATATAGATCC+AGG - chr3_4:62971659-62971678 None:intergenic 25.0%
! TAATTTCCTAAACTGCAATA+AGG - chr3_4:62971746-62971765 None:intergenic 25.0%
! AACGCTTGCAAAAAAAATTT+AGG - chr3_4:62971945-62971964 None:intergenic 25.0%
! TTGGACAATATTACATATCT+TGG - chr3_4:62972192-62972211 None:intergenic 25.0%
! CTAAAAATCAAGGAAATCAA+TGG - chr3_4:62972273-62972292 None:intergenic 25.0%
!! ATTTTAAACCAAACTTCAGA+GGG - chr3_4:62972340-62972359 None:intergenic 25.0%
! TCATGTGTGAAAACAAAAAA+TGG + chr3_4:62972508-62972527 Msa0512930:intron 25.0%
! AAAAAATGGCTGAAATATCA+AGG + chr3_4:62972522-62972541 Msa0512930:intron 25.0%
! TTAGATTATTGGTATGTACT+AGG + chr3_4:62972606-62972625 Msa0512930:intron 25.0%
! TTATAGAAGTGGAGATAAAT+GGG + chr3_4:62972629-62972648 Msa0512930:CDS 25.0%
!!! ACTAATCTTTGCATTGATTA+TGG + chr3_4:62973006-62973025 Msa0512930:intron 25.0%
! ATACTTGGAATCATTGTTAA+TGG - chr3_4:62973172-62973191 None:intergenic 25.0%
!!! TATGACTGACCAATTTTTTT+TGG + chr3_4:62973236-62973255 Msa0512930:intron 25.0%
! TTGATTGAATTGAACACAAA+AGG - chr3_4:62973441-62973460 None:intergenic 25.0%
TAGATTATGGATGGGTATAT+TGG - chr3_4:62970388-62970407 None:intergenic 30.0%
! TGAGTTTCTAGATTATGGAT+GGG - chr3_4:62970396-62970415 None:intergenic 30.0%
! ATGAGTTTCTAGATTATGGA+TGG - chr3_4:62970397-62970416 None:intergenic 30.0%
!!! TGCTATTTTTTGGCTCTAAA+AGG - chr3_4:62970439-62970458 None:intergenic 30.0%
ATTTATCAAGTACAAGCAGA+AGG + chr3_4:62970470-62970489 Msa0512930:five_prime_UTR 30.0%
! CAAGAGTGTGAATTAATCAA+TGG + chr3_4:62970508-62970527 Msa0512930:exon 30.0%
!! CAATGACAGTATTTTTGAGA+AGG + chr3_4:62970673-62970692 Msa0512930:CDS 30.0%
!! TTTTTAGCATTCCCTATTAC+AGG - chr3_4:62970743-62970762 None:intergenic 30.0%
AGGGAATGCTAAAAAAAAGA+AGG + chr3_4:62970748-62970767 Msa0512930:CDS 30.0%
AAAAGAAGGAAAAGAAAGGT+TGG + chr3_4:62970762-62970781 Msa0512930:CDS 30.0%
! GTATGATTATGAGAGTTTTG+TGG + chr3_4:62970799-62970818 Msa0512930:CDS 30.0%
AAGTATCTATGTTTCTTTCC+AGG + chr3_4:62970983-62971002 Msa0512930:intron 30.0%
GTTTATCGAAACAAAGTCTA+AGG + chr3_4:62971190-62971209 Msa0512930:intron 30.0%
ATTAATTATGCATCCCTTTC+TGG - chr3_4:62971235-62971254 None:intergenic 30.0%
AGGATCCATATTACTAGTAA+TGG - chr3_4:62971437-62971456 None:intergenic 30.0%
AAATTCTTCAATGAATAGCC+AGG - chr3_4:62971589-62971608 None:intergenic 30.0%
TCTACATTATGCATGCAATA+TGG + chr3_4:62971681-62971700 Msa0512930:intron 30.0%
! GTTTAACTTCATAAGAGCAT+TGG + chr3_4:62971915-62971934 Msa0512930:intron 30.0%
TCAATCCATTTATTTGTCAG+TGG + chr3_4:62972004-62972023 Msa0512930:intron 30.0%
ATTTACCACCATTTGAAAAC+TGG - chr3_4:62972036-62972055 None:intergenic 30.0%
!! TACAAGTATTTTTGCTTTCC+CGG - chr3_4:62972062-62972081 None:intergenic 30.0%
! CATTTTAAACCAAACTTCAG+AGG - chr3_4:62972341-62972360 None:intergenic 30.0%
! GTAACTCAACCTTTTTGAAT+TGG + chr3_4:62972400-62972419 Msa0512930:intron 30.0%
! ATGCCTTTCATTTTACTCAT+GGG + chr3_4:62972424-62972443 Msa0512930:intron 30.0%
TATGTACTAGGTTATAGAAG+TGG + chr3_4:62972618-62972637 Msa0512930:intron 30.0%
GTTATAGAAGTGGAGATAAA+TGG + chr3_4:62972628-62972647 Msa0512930:CDS 30.0%
TATAGAAGTGGAGATAAATG+GGG + chr3_4:62972630-62972649 Msa0512930:CDS 30.0%
TCTACCTGCATTTCTTTATA+TGG - chr3_4:62972675-62972694 None:intergenic 30.0%
!! AGATTTCATGTCTCTAAGAT+TGG + chr3_4:62972692-62972711 Msa0512930:intron 30.0%
CTATCAGTGGTTATTTGTTT+AGG + chr3_4:62972848-62972867 Msa0512930:intron 30.0%
TCAAAGGAGTAATAATCAGA+AGG - chr3_4:62972927-62972946 None:intergenic 30.0%
TTAGTGAAAAAATCTTGGGT+AGG - chr3_4:62973136-62973155 None:intergenic 30.0%
TTACATATATCAGCATAGCA+AGG - chr3_4:62973408-62973427 None:intergenic 30.0%
TATGCTGATATATGTAAGCA+TGG + chr3_4:62973411-62973430 Msa0512930:intron 30.0%
ATTGAATTGAACACAAAAGG+AGG - chr3_4:62973438-62973457 None:intergenic 30.0%
! CTAACACAAAAATAACTTGC+AGG + chr3_4:62973479-62973498 Msa0512930:intron 30.0%
TTAGGACATATACTTGAGTT+TGG - chr3_4:62973518-62973537 None:intergenic 30.0%
TGTCATGGAAAATTATCCAA+AGG - chr3_4:62973563-62973582 None:intergenic 30.0%
AGTATACACTAATTCTGTCA+TGG - chr3_4:62973578-62973597 None:intergenic 30.0%
TTCTCATGATTTCTACTTTG+AGG + chr3_4:62973604-62973623 Msa0512930:three_prime_UTR 30.0%
GAGTGTGAATTAATCAATGG+TGG + chr3_4:62970511-62970530 Msa0512930:exon 35.0%
! TTTCCTCTTGGAGCATATTT+TGG - chr3_4:62970575-62970594 None:intergenic 35.0%
AAATATGCTCCAAGAGGAAA+TGG + chr3_4:62970575-62970594 Msa0512930:CDS 35.0%
! TAACGTGTCTTTTGTCCTAA+AGG - chr3_4:62970653-62970672 None:intergenic 35.0%
! GACTTTGTTTGCACGAAAAA+TGG + chr3_4:62970703-62970722 Msa0512930:CDS 35.0%
! AGAAAGGTTGGTTGGATATT+TGG + chr3_4:62970774-62970793 Msa0512930:CDS 35.0%
! GAAAGGTTGGTTGGATATTT+GGG + chr3_4:62970775-62970794 Msa0512930:CDS 35.0%
! TTGTGACAGTGTTTCTAAGA+AGG + chr3_4:62971032-62971051 Msa0512930:intron 35.0%
! AAGTCTAAGGTGTTTGCTTT+AGG + chr3_4:62971203-62971222 Msa0512930:intron 35.0%
CTGCTAAAATATTGAGTTCG+AGG - chr3_4:62971279-62971298 None:intergenic 35.0%
TAGTAAGGACTCCTCTTTAT+AGG - chr3_4:62971306-62971325 None:intergenic 35.0%
TGTCAAATGCAGAACGTAAA+TGG - chr3_4:62971355-62971374 None:intergenic 35.0%
CGTTCTGCATTTGACAATTT+AGG + chr3_4:62971359-62971378 Msa0512930:intron 35.0%
! AGGGTTTGGAACTTTGATTT+GGG + chr3_4:62971508-62971527 Msa0512930:intron 35.0%
!! TTTGGAACTTTGATTTGGGA+AGG + chr3_4:62971512-62971531 Msa0512930:intron 35.0%
CTAGTACCTTATTGCAGTTT+AGG + chr3_4:62971737-62971756 Msa0512930:intron 35.0%
AATTATTTCCACCGACAAGA+TGG + chr3_4:62971761-62971780 Msa0512930:CDS 35.0%
ATTATTTCCACCGACAAGAT+GGG + chr3_4:62971762-62971781 Msa0512930:CDS 35.0%
AGTAACAAAATCACCTCAGA+AGG - chr3_4:62971841-62971860 None:intergenic 35.0%
TTGCAGAGCTGCATAATATT+AGG + chr3_4:62972241-62972260 Msa0512930:intron 35.0%
TGCAGAGCTGCATAATATTA+GGG + chr3_4:62972242-62972261 Msa0512930:intron 35.0%
GTGAGAGTTACAAAATGTCT+TGG - chr3_4:62972315-62972334 None:intergenic 35.0%
! AAAGGCATGCCAATTCAAAA+AGG - chr3_4:62972412-62972431 None:intergenic 35.0%
! CATGCCTTTCATTTTACTCA+TGG + chr3_4:62972423-62972442 Msa0512930:intron 35.0%
CATCCCATGAGTAAAATGAA+AGG - chr3_4:62972430-62972449 None:intergenic 35.0%
TGAAAGTAATCAATCGAGTC+TGG + chr3_4:62972808-62972827 Msa0512930:intron 35.0%
ATGTTAGTATCCACTATCCA+TGG + chr3_4:62972888-62972907 Msa0512930:intron 35.0%
!!! TTTTTTCTTGTTCAGGTACC+TGG + chr3_4:62973066-62973085 Msa0512930:intron 35.0%
GAAAGACAAGAAGACATACT+TGG - chr3_4:62973187-62973206 None:intergenic 35.0%
ATGAGCTGTGATATGGTTTA+TGG + chr3_4:62973339-62973358 Msa0512930:CDS 35.0%
TTTGGTGGAGTTATTAGCTG+AGG - chr3_4:62970557-62970576 None:intergenic 40.0%
ATGGTTCAGCTATACCACAA+CGG - chr3_4:62970616-62970635 None:intergenic 40.0%
CATTTGCAGAGCCTGTAATA+GGG + chr3_4:62970729-62970748 Msa0512930:CDS 40.0%
! GAAGGAAAAGAAAGGTTGGT+TGG + chr3_4:62970766-62970785 Msa0512930:CDS 40.0%
CGAAAAGAGTAATGTTGCGT+CGG + chr3_4:62970828-62970847 Msa0512930:CDS 40.0%
TCTATAATATCCACCTGAGC+AGG - chr3_4:62970917-62970936 None:intergenic 40.0%
CTTTAGGCTTCATCCAGAAA+GGG + chr3_4:62971219-62971238 Msa0512930:intron 40.0%
TTAGCAGACCTCCTATAAAG+AGG + chr3_4:62971292-62971311 Msa0512930:intron 40.0%
TAAGGACTCCTCTTTATAGG+AGG - chr3_4:62971303-62971322 None:intergenic 40.0%
GGAGTCCTTACTAATCTGTT+TGG + chr3_4:62971313-62971332 Msa0512930:intron 40.0%
GTCCTTACTAATCTGTTTGG+AGG + chr3_4:62971316-62971335 Msa0512930:intron 40.0%
CACCTCCAAACAGATTAGTA+AGG - chr3_4:62971321-62971340 None:intergenic 40.0%
!! ATCTGTTTGGAGGTGTCATT+AGG + chr3_4:62971326-62971345 Msa0512930:intron 40.0%
! GAGGGTTTGGAACTTTGATT+TGG + chr3_4:62971507-62971526 Msa0512930:intron 40.0%
! ATTTGGGAAGGTGCATAGTA+GGG + chr3_4:62971524-62971543 Msa0512930:intron 40.0%
CTTCAATGAATAGCCAGGTT+GGG - chr3_4:62971584-62971603 None:intergenic 40.0%
TCTTCAATGAATAGCCAGGT+TGG - chr3_4:62971585-62971604 None:intergenic 40.0%
! ACAAGTTCACAAGTTGGCTT+CGG - chr3_4:62971612-62971631 None:intergenic 40.0%
TCGGTCCACTGACAAATAAA+TGG - chr3_4:62972012-62972031 None:intergenic 40.0%
CCACCATTTGAAAACTGGTT+CGG - chr3_4:62972031-62972050 None:intergenic 40.0%
TCAAATGGTGGTAAATCCTC+CGG + chr3_4:62972040-62972059 Msa0512930:intron 40.0%
!! AAGTATTTTTGCTTTCCCGG+AGG - chr3_4:62972059-62972078 None:intergenic 40.0%
GCGTCCATATAAAGAAATGC+AGG + chr3_4:62972668-62972687 Msa0512930:CDS 40.0%
TGAAGACATGAGCTGTGATA+TGG + chr3_4:62973332-62973351 Msa0512930:CDS 40.0%
ATCAGCATAGCAAGGTTGTT+TGG - chr3_4:62973400-62973419 None:intergenic 40.0%
TCTGCTCATGATTGTAGCTT+AGG - chr3_4:62973536-62973555 None:intergenic 40.0%
ATGTGCAAGATGAAAGCCAA+AGG + chr3_4:62973780-62973799 Msa0512930:three_prime_UTR 40.0%
!! CCTCTTGGAGCATATTTTGG+TGG - chr3_4:62970572-62970591 None:intergenic 45.0%
CCACCAAAATATGCTCCAAG+AGG + chr3_4:62970569-62970588 Msa0512930:CDS 45.0%
TTCAGCTATACCACAACGGA+TGG - chr3_4:62970612-62970631 None:intergenic 45.0%
TGTGGTATAGCTGAACCATC+TGG + chr3_4:62970617-62970636 Msa0512930:CDS 45.0%
! GTCTTTTGTCCTAAAGGAGC+AGG - chr3_4:62970647-62970666 None:intergenic 45.0%
CCTATTACAGGCTCTGCAAA+TGG - chr3_4:62970731-62970750 None:intergenic 45.0%
CCATTTGCAGAGCCTGTAAT+AGG + chr3_4:62970728-62970747 Msa0512930:CDS 45.0%
! GCTTTAGGCTTCATCCAGAA+AGG + chr3_4:62971218-62971237 Msa0512930:intron 45.0%
! TGGAAATTTTGAGCCGTGAG+AGG + chr3_4:62971488-62971507 Msa0512930:intron 45.0%
! GGAAATTTTGAGCCGTGAGA+GGG + chr3_4:62971489-62971508 Msa0512930:intron 45.0%
CAAAGTTCCAAACCCTCTCA+CGG - chr3_4:62971504-62971523 None:intergenic 45.0%
! GATTTGGGAAGGTGCATAGT+AGG + chr3_4:62971523-62971542 Msa0512930:intron 45.0%
! TTGGGACTCAAGCATTGTGT+AGG - chr3_4:62971566-62971585 None:intergenic 45.0%
TGCAAGCGTTCTGCATTTCA+AGG + chr3_4:62971955-62971974 Msa0512930:intron 45.0%
! GGACCGAACCAGTTTTCAAA+TGG + chr3_4:62972025-62972044 Msa0512930:intron 45.0%
! CCGAACCAGTTTTCAAATGG+TGG + chr3_4:62972028-62972047 Msa0512930:intron 45.0%
CAAATGGTGGTAAATCCTCC+GGG + chr3_4:62972041-62972060 Msa0512930:intron 45.0%
TTGTCCAAGTGCTTCCACTT+TGG + chr3_4:62972204-62972223 Msa0512930:intron 45.0%
! TCCACTTTGGAGAGGATTGT+AGG + chr3_4:62972217-62972236 Msa0512930:intron 45.0%
ACCTACAATCCTCTCCAAAG+TGG - chr3_4:62972221-62972240 None:intergenic 45.0%
!! TCTCACAACCCTCTGAAGTT+TGG + chr3_4:62972329-62972348 Msa0512930:intron 45.0%
AATGGGGTGAAGCAAAAGAG+TGG + chr3_4:62972646-62972665 Msa0512930:CDS 45.0%
AGTCTGGAAAGTCCTGAACA+GGG + chr3_4:62972824-62972843 Msa0512930:intron 45.0%
ATCCACTATCCATGGTTCGA+AGG + chr3_4:62972896-62972915 Msa0512930:intron 45.0%
AACCTTCGAACCATGGATAG+TGG - chr3_4:62972901-62972920 None:intergenic 45.0%
ACTATCCATGGTTCGAAGGT+TGG + chr3_4:62972900-62972919 Msa0512930:intron 45.0%
AGTTAAGCAGACAGCTCGAT+CGG - chr3_4:62972970-62972989 None:intergenic 45.0%
ACTGGGTCGTCTTCAAATGA+AGG - chr3_4:62973375-62973394 None:intergenic 45.0%
AGCAAGGTTGTTTGGAGACT+GGG - chr3_4:62973392-62973411 None:intergenic 45.0%
TAGCAAGGTTGTTTGGAGAC+TGG - chr3_4:62973393-62973412 None:intergenic 45.0%
ATCATGAGCAGACACTCCTT+TGG + chr3_4:62973544-62973563 Msa0512930:exon 45.0%
GCAGTAGCACCATTTCCTCT+TGG - chr3_4:62970587-62970606 None:intergenic 50.0%
AAAGGAGCAGGTTCACCAGA+TGG - chr3_4:62970635-62970654 None:intergenic 50.0%
TCTGGTGAACCTGCTCCTTT+AGG + chr3_4:62970635-62970654 Msa0512930:CDS 50.0%
GCAACAGCAAGTTGTTCGTG+AGG + chr3_4:62970862-62970881 Msa0512930:CDS 50.0%
CTTCTCTCTATGCTTCCTCC+AGG + chr3_4:62970887-62970906 Msa0512930:CDS 50.0%
! TTTTGAGCCGTGAGAGGGTT+TGG + chr3_4:62971494-62971513 Msa0512930:intron 50.0%
! GGACTCAAGCATTGTGTAGG+AGG - chr3_4:62971563-62971582 None:intergenic 50.0%
ACAATGCTTGAGTCCCAACC+TGG + chr3_4:62971568-62971587 Msa0512930:intron 50.0%
AACTCTGCAGCCCATCTTGT+CGG - chr3_4:62971775-62971794 None:intergenic 50.0%
TGACAGTGCCTTTCTTCCAC+TGG + chr3_4:62971806-62971825 Msa0512930:CDS 50.0%
CCAACTAGCCAGTGGAAGAA+AGG - chr3_4:62971817-62971836 None:intergenic 50.0%
! CCTTTCTTCCACTGGCTAGT+TGG + chr3_4:62971814-62971833 Msa0512930:CDS 50.0%
!! CTCTCCAAAGTGGAAGCACT+TGG - chr3_4:62972211-62972230 None:intergenic 50.0%
! CAAGTGCTTCCACTTTGGAG+AGG + chr3_4:62972209-62972228 Msa0512930:intron 50.0%
GAGTCTGGAAAGTCCTGAAC+AGG + chr3_4:62972823-62972842 Msa0512930:intron 50.0%
TCCTGAACAGGGACTATCAG+TGG + chr3_4:62972835-62972854 Msa0512930:intron 50.0%
ACCACTGATAGTCCCTGTTC+AGG - chr3_4:62972839-62972858 None:intergenic 50.0%
AAGGTCCAACCTTCGAACCA+TGG - chr3_4:62972908-62972927 None:intergenic 50.0%
!! TCGATCGGTATCGGTGAACT+GGG - chr3_4:62972955-62972974 None:intergenic 50.0%
TTCAGGTACCTGGAGAACAG+TGG + chr3_4:62973076-62973095 Msa0512930:intron 50.0%
CAACACATCCACTGTTCTCC+AGG - chr3_4:62973087-62973106 None:intergenic 50.0%
CTGGAGAACAGTGGATGTGT+TGG + chr3_4:62973085-62973104 Msa0512930:CDS 50.0%
CTTCAAATGAAGGCGGGGTT+TGG - chr3_4:62973365-62973384 None:intergenic 50.0%
GTCGTCTTCAAATGAAGGCG+GGG - chr3_4:62973370-62973389 None:intergenic 50.0%
GGTCGTCTTCAAATGAAGGC+GGG - chr3_4:62973371-62973390 None:intergenic 50.0%
GGGTCGTCTTCAAATGAAGG+CGG - chr3_4:62973372-62973391 None:intergenic 50.0%
GCTACTGCTACCATCCGTTG+TGG + chr3_4:62970599-62970618 Msa0512930:CDS 55.0%
TAGGAGTCTGCTCTCATGCC+TGG + chr3_4:62971638-62971657 Msa0512930:intron 55.0%
CAGAAGGACCAACTAGCCAG+TGG - chr3_4:62971825-62971844 None:intergenic 55.0%
! CTGGCTAGTTGGTCCTTCTG+AGG + chr3_4:62971825-62971844 Msa0512930:CDS 55.0%
GGTGAACTGGGGGACATCAA+AGG - chr3_4:62972943-62972962 None:intergenic 55.0%
!! GATCGGTATCGGTGAACTGG+GGG - chr3_4:62972953-62972972 None:intergenic 55.0%
!! CGATCGGTATCGGTGAACTG+GGG - chr3_4:62972954-62972973 None:intergenic 55.0%
!! CTCGATCGGTATCGGTGAAC+TGG - chr3_4:62972956-62972975 None:intergenic 55.0%
GCAGACAGCTCGATCGGTAT+CGG - chr3_4:62972964-62972983 None:intergenic 55.0%
TCTGCAGCCCATCTTGTCGG+TGG - chr3_4:62971772-62971791 None:intergenic 60.0%
TCCTCCAGGTGCGCCTGCTC+AGG + chr3_4:62970901-62970920 Msa0512930:CDS 70.0%
ACCTGAGCAGGCGCACCTGG+AGG - chr3_4:62970905-62970924 None:intergenic 70.0%
TCCAGGTGCGCCTGCTCAGG+TGG + chr3_4:62970904-62970923 Msa0512930:intron 70.0%
TCCACCTGAGCAGGCGCACC+TGG - chr3_4:62970908-62970927 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 62970371 62973806 62970371 ID=Msa0512930;Name=Msa0512930
chr3_4 mRNA 62970371 62973806 62970371 ID=Msa0512930-mRNA-1;Parent=Msa0512930;Name=Msa0512930-mRNA-1;_AED=0.03;_eAED=0.03;_QI=156|1|1|1|1|1|6|256|267
chr3_4 exon 62970371 62970922 62970371 ID=Msa0512930-mRNA-1:exon:15630;Parent=Msa0512930-mRNA-1
chr3_4 exon 62971754 62971846 62971754 ID=Msa0512930-mRNA-1:exon:15631;Parent=Msa0512930-mRNA-1
chr3_4 exon 62972628 62972689 62972628 ID=Msa0512930-mRNA-1:exon:15632;Parent=Msa0512930-mRNA-1
chr3_4 exon 62973081 62973187 62973081 ID=Msa0512930-mRNA-1:exon:15633;Parent=Msa0512930-mRNA-1
chr3_4 exon 62973328 62973423 62973328 ID=Msa0512930-mRNA-1:exon:15634;Parent=Msa0512930-mRNA-1
chr3_4 exon 62973501 62973806 62973501 ID=Msa0512930-mRNA-1:exon:15635;Parent=Msa0512930-mRNA-1
chr3_4 five_prime_UTR 62970371 62970526 62970371 ID=Msa0512930-mRNA-1:five_prime_utr;Parent=Msa0512930-mRNA-1
chr3_4 CDS 62970527 62970922 62970527 ID=Msa0512930-mRNA-1:cds;Parent=Msa0512930-mRNA-1
chr3_4 CDS 62971754 62971846 62971754 ID=Msa0512930-mRNA-1:cds;Parent=Msa0512930-mRNA-1
chr3_4 CDS 62972628 62972689 62972628 ID=Msa0512930-mRNA-1:cds;Parent=Msa0512930-mRNA-1
chr3_4 CDS 62973081 62973187 62973081 ID=Msa0512930-mRNA-1:cds;Parent=Msa0512930-mRNA-1
chr3_4 CDS 62973328 62973423 62973328 ID=Msa0512930-mRNA-1:cds;Parent=Msa0512930-mRNA-1
chr3_4 CDS 62973501 62973550 62973501 ID=Msa0512930-mRNA-1:cds;Parent=Msa0512930-mRNA-1
chr3_4 three_prime_UTR 62973551 62973806 62973551 ID=Msa0512930-mRNA-1:three_prime_utr;Parent=Msa0512930-mRNA-1
Gene Sequence

>Msa0512930

ATGGTGGTTCTTAACTTTCAGCTTGTTCCTCAGCTAATAACTCCACCAAAATATGCTCCAAGAGGAAATGGTGCTACTGCTACCATCCGTTGTGGTATAGCTGAACCATCTGGTGAACCTGCTCCTTTAGGACAAAAGACACGTTACAATGACAGTATTTTTGAGAAGGTTTTCATGACTTTGTTTGCACGAAAAATGGAACCATTTGCAGAGCCTGTAATAGGGAATGCTAAAAAAAAGAAGGAAAAGAAAGGTTGGTTGGATATTTGGGAGTATGATTATGAGAGTTTTGTGGATGTGTCGAAAAGAGTAATGTTGCGTCGGTCTCGTTTGCAGCAACAGCAAGTTGTTCGTGAGGTTCTTCTCTCTATGCTTCCTCCAGGTGCGCCTGCTCAGTTTAGGAAATTATTTCCACCGACAAGATGGGCTGCAGAGTTTAATGCTGCATTGACAGTGCCTTTCTTCCACTGGCTAGTTGGTCCTTCTGAGGTTATAGAAGTGGAGATAAATGGGGTGAAGCAAAAGAGTGGCGTCCATATAAAGAAATGCAGGTACCTGGAGAACAGTGGATGTGTTGGACAGTGTGTTAATATGTGCAAGATTCCTACCCAAGATTTTTTCACTAATGAATTTGGACTTCCATTAACAATGATTCCAAATTTTGAAGACATGAGCTGTGATATGGTTTATGGCCAAACCCCGCCTTCATTTGAAGACGACCCAGTCTCCAAACAACCTTGCTATGCTGATATATGTTCTGTAGCGAATCCAAACTCAAGTATATGTCCTAAGCTACAATCATGA

Protein sequence

>Msa0512930

MVVLNFQLVPQLITPPKYAPRGNGATATIRCGIAEPSGEPAPLGQKTRYNDSIFEKVFMTLFARKMEPFAEPVIGNAKKKKEKKGWLDIWEYDYESFVDVSKRVMLRRSRLQQQQVVREVLLSMLPPGAPAQFRKLFPPTRWAAEFNAALTVPFFHWLVGPSEVIEVEINGVKQKSGVHIKKCRYLENSGCVGQCVNMCKIPTQDFFTNEFGLPLTMIPNFEDMSCDMVYGQTPPSFEDDPVSKQPCYADICSVANPNSSICPKLQS*