AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0880200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0880200 MtrunA17_Chr1g0188121 97.941 340 7 0 1 340 1 340 0.0 693
Msa0880200 MtrunA17_Chr1g0184951 77.233 347 72 2 1 340 1 347 2.67e-177 495
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0880200 AT3G63410.1 76.522 345 69 4 1 340 1 338 0.0 503

Find 132 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACACAAGAAAGAAGCATTT+TGG 0.213825 6_1:-26699635 Msa0880200:CDS
AGCTAAGGAGTTGTGGAATA+TGG 0.218960 6_1:+26700189 None:intergenic
AGCATATAAGCCAAGTTTAT+TGG 0.221137 6_1:-26697528 Msa0880200:three_prime_UTR
GTCCTGTATACCCAACATTT+TGG 0.229561 6_1:-26698232 Msa0880200:CDS
TCTTTAAGCCACATGTAAAT+TGG 0.231207 6_1:+26697819 None:intergenic
CGCACACCGCGATACCATTT+TGG 0.239417 6_1:+26698101 None:intergenic
AGAAACACCAATGGATTTAC+AGG 0.256390 6_1:+26697891 None:intergenic
CTGATTTCTGATTTCATGTC+TGG 0.273349 6_1:-26697478 Msa0880200:three_prime_UTR
TTCAGCACCACTAAGCATTA+AGG 0.275776 6_1:+26699839 None:intergenic
GTATATTGAATGGTTTAAAA+AGG 0.282915 6_1:-26698159 Msa0880200:CDS
TTTCTCTCAAGGCTCATTCT+TGG 0.311957 6_1:-26697873 Msa0880200:CDS
TTCTTGTGTTGGATGAATCT+AGG 0.315559 6_1:+26699648 None:intergenic
TCAATATACTCTTCCTCCTT+AGG 0.315806 6_1:+26698173 None:intergenic
GTTAATTTGTTGACATGTTT+TGG 0.318002 6_1:-26697647 Msa0880200:three_prime_UTR
ATGTCAACAAATTAACATTA+TGG 0.319352 6_1:+26697654 None:intergenic
GCCTGCCCTTTGGAACAATT+TGG 0.321260 6_1:+26697796 None:intergenic
GCATATAGAGTTCTGAAAAT+AGG 0.330673 6_1:-26698275 Msa0880200:CDS
TTTGCAACTGAAATGGAAAA+TGG 0.332120 6_1:+26699975 None:intergenic
ATCAGGCGACTCTCCCCTTC+AGG 0.333951 6_1:-26698030 Msa0880200:intron
GGAGGCAAAGCGTGCATTAT+AGG 0.339249 6_1:-26698254 Msa0880200:CDS
TATAAAAGTGTTAATTTCCT+TGG 0.349879 6_1:-26699899 Msa0880200:five_prime_UTR
TGAAAAGAATAGGTCCAAAA+TGG 0.366680 6_1:-26698115 Msa0880200:CDS
TGTTGTTCAGTATTGAATAC+TGG 0.372308 6_1:-26698325 Msa0880200:intron
GATTAAATACGCCTGCCCTT+TGG 0.378600 6_1:+26697786 None:intergenic
TTTGAACATTGTTTATTTGA+AGG 0.383114 6_1:-26697572 Msa0880200:three_prime_UTR
TTGGAGAATCAAGTAAAGTT+GGG 0.387660 6_1:-26697758 Msa0880200:three_prime_UTR
ACTGGTGTCAAACCTTTATC+AGG 0.388260 6_1:-26698047 Msa0880200:CDS
TTACTTAAATTTAAGTGTTA+CGG 0.388621 6_1:-26697288 Msa0880200:three_prime_UTR
AACCAAAATGTTGGGTATAC+AGG 0.392300 6_1:+26698230 None:intergenic
GTGGATGTTGGAGGAGGAAC+TGG 0.396715 6_1:-26699495 Msa0880200:CDS
AGCATAGTTCCATCTGGATT+AGG 0.398282 6_1:-26699798 Msa0880200:CDS
TGTTTATTTGAAGGTTAGTC+AGG 0.400689 6_1:-26697563 Msa0880200:three_prime_UTR
ATTGGAGAATCAAGTAAAGT+TGG 0.403522 6_1:-26697759 Msa0880200:three_prime_UTR
TTTGGAATTTGCAACTGAAA+TGG 0.404023 6_1:+26699968 None:intergenic
TGGTAAGGTACATAATGTTA+TGG 0.407729 6_1:+26699995 None:intergenic
GCGGCGGCACGGCCTCATCA+TGG 0.410184 6_1:-26698081 Msa0880200:CDS
AAAATGCTTCTTTCTTGTGT+TGG 0.410236 6_1:+26699637 None:intergenic
AGGGGAGAGTCGCCTGATAA+AGG 0.412042 6_1:+26698035 None:intergenic
GAATCGTAGTAAAATTTAAG+AGG 0.413419 6_1:+26697612 None:intergenic
GAAATGAGACATGGATGGTT+TGG 0.414913 6_1:+26699950 None:intergenic
CAATATACTCTTCCTCCTTA+GGG 0.416784 6_1:+26698174 None:intergenic
AGAAATAATGCAGTTTCATA+TGG 0.418931 6_1:-26699738 Msa0880200:CDS
TTAATGCCACGCTGTGGATC+AGG 0.419899 6_1:+26698302 None:intergenic
CAGACATGAAATCAGAAATC+AGG 0.420206 6_1:+26697479 None:intergenic
AAAGAATGTAAGATAATTGA+AGG 0.432985 6_1:-26699369 Msa0880200:CDS
ATTAATAGCATAGTTCCATC+TGG 0.434382 6_1:-26699804 Msa0880200:CDS
ATGGCCTCCTTAATGCTTAG+TGG 0.436810 6_1:-26699846 Msa0880200:CDS
GCTAAGGAGTTGTGGAATAT+GGG 0.445649 6_1:+26700190 None:intergenic
CTTTATGTAGCTTGGTCCTA+AGG 0.446738 6_1:-26697931 Msa0880200:intron
TCCGCATAATCAGTTGGAAA+TGG 0.449194 6_1:+26699330 None:intergenic
ATCATGGGTTGTTCTGTCAC+TGG 0.452148 6_1:-26698065 Msa0880200:CDS
GATGTCAAGCTGAAAAGAAT+AGG 0.453690 6_1:-26698125 Msa0880200:CDS
ATTATGGAAGGCAAAGTTCA+TGG 0.458064 6_1:+26697670 None:intergenic
CGGCGGCACGGCCTCATCAT+GGG 0.458451 6_1:-26698080 Msa0880200:CDS
GCGGACCGATATGTTTCTGC+TGG 0.461499 6_1:-26699312 Msa0880200:CDS
TTATACCTATCCAATAAACT+TGG 0.483592 6_1:+26697518 None:intergenic
CATCCACAACTCGCATTCTC+CGG 0.485995 6_1:+26699511 None:intergenic
ACCAAATTGTTCCAAAGGGC+AGG 0.486418 6_1:-26697797 Msa0880200:CDS
TATCGCGGTGTGCGGCGGCA+CGG 0.488724 6_1:-26698092 Msa0880200:CDS
ACATGAAAAGCATAGTGTAT+TGG 0.488827 6_1:+26700130 None:intergenic
AGGCGTATTTAATCGAAGAT+TGG 0.490077 6_1:-26697777 Msa0880200:exon
ATGTCTTCAGTCCAGTGACC+TGG 0.491830 6_1:+26699570 None:intergenic
AATTGAGACAACCAAAATGT+TGG 0.493584 6_1:+26698221 None:intergenic
ATTGAGACAACCAAAATGTT+GGG 0.494828 6_1:+26698222 None:intergenic
TTCTGTACATCCTCTACCTT+AGG 0.496880 6_1:+26697915 None:intergenic
AAACTTGGCTTATATGCTGC+AGG 0.498720 6_1:+26697533 None:intergenic
GATAGGTATAAAACATGTGC+TGG 0.500269 6_1:-26697506 Msa0880200:three_prime_UTR
GGAACTGGATTCACTACTCT+TGG 0.502345 6_1:-26699480 Msa0880200:CDS
ATATAATAAATCCAGGTCAC+TGG 0.503119 6_1:-26699581 Msa0880200:CDS
ATAAGCCAAGTTTATTGGAT+AGG 0.503163 6_1:-26697523 Msa0880200:three_prime_UTR
GTCTCCTCATCAGCTGGCTA+AGG 0.507432 6_1:-26699412 Msa0880200:CDS
ACCTTCCAGCAGAAACATAT+CGG 0.509798 6_1:+26699307 None:intergenic
ATCCATTGGTGTTTCTCTCA+AGG 0.513270 6_1:-26697884 Msa0880200:CDS
CTCCGGTCATACAAATCAGC+AGG 0.515409 6_1:+26699528 None:intergenic
CTCAATTCTTTGCAGACATG+TGG 0.515450 6_1:-26698205 Msa0880200:CDS
AGCAATACCTCAGTGGTGAA+TGG 0.518290 6_1:-26700104 Msa0880200:five_prime_UTR
TGATCAGTCTCCTCATCAGC+TGG 0.520456 6_1:-26699418 Msa0880200:CDS
TACATGTGAGTGGTGCTGAT+TGG 0.522534 6_1:+26700058 None:intergenic
TCTGATGATTGATGTTCTCA+AGG 0.524510 6_1:-26697715 Msa0880200:three_prime_UTR
TAAAGACCAAATTGTTCCAA+AGG 0.528009 6_1:-26697802 Msa0880200:CDS
AGCCTGCTGATTTGTATGAC+CGG 0.529953 6_1:-26699530 Msa0880200:CDS
AACTGAAATGGAAAATGGTA+AGG 0.530261 6_1:+26699980 None:intergenic
GCTGGCTAAGGCTAAGAAGA+AGG 0.533762 6_1:-26699400 Msa0880200:CDS
TATGATCATATAATAAATCC+AGG 0.542176 6_1:-26699588 Msa0880200:CDS
AAAGACCAAATTGTTCCAAA+GGG 0.542862 6_1:-26697801 Msa0880200:CDS
ACCGATATGTTTCTGCTGGA+AGG 0.544245 6_1:-26699308 Msa0880200:intron
TCCATTTCCAACTGATTATG+CGG 0.544265 6_1:-26699331 Msa0880200:CDS
CATGTGGATGCTCTTCCCTA+AGG 0.545532 6_1:-26698189 Msa0880200:CDS
AAAATTTGTGAAGATATGTC+TGG 0.548237 6_1:-26700218 Msa0880200:five_prime_UTR
CACCACTCACATGTATTATG+TGG 0.551164 6_1:-26700050 Msa0880200:five_prime_UTR
ATGCGAGTTGTGGATGTTGG+AGG 0.558982 6_1:-26699504 Msa0880200:CDS
TGGAACTAGTACATAGTAAG+TGG 0.561824 6_1:+26697839 None:intergenic
GTAGCTTGGTCCTAAGGTAG+AGG 0.563615 6_1:-26697925 Msa0880200:intron
ACTAAGCATTAAGGAGGCCA+TGG 0.563703 6_1:+26699848 None:intergenic
AGGAGGAAGAGTATATTGAA+TGG 0.563879 6_1:-26698169 Msa0880200:CDS
GATGCAGCGTCTCATCCGCA+AGG 0.564190 6_1:-26699683 Msa0880200:CDS
ATGAATCTAGGCTGAGAAGA+AGG 0.567539 6_1:+26699660 None:intergenic
TACTAGTTCCAATTTACATG+TGG 0.569755 6_1:-26697827 Msa0880200:CDS
CAACAAATTAACATTATGGA+AGG 0.575099 6_1:+26697658 None:intergenic
GAGGCACAGCTAAGGAGTTG+TGG 0.577245 6_1:+26700182 None:intergenic
AGAATGCGAGTTGTGGATGT+TGG 0.578151 6_1:-26699507 Msa0880200:CDS
ACAGAAGCCTGTAAATCCAT+TGG 0.579520 6_1:-26697898 Msa0880200:CDS
CTCACAGAACCTAATCCAGA+TGG 0.579852 6_1:+26699789 None:intergenic
TTAGCCTTAGCCAGCTGATG+AGG 0.582379 6_1:+26699408 None:intergenic
TGTATTCTATAGTACCTGAA+GGG 0.582741 6_1:+26698016 None:intergenic
TTAATACTAAGATTCTTCCA+AGG 0.583577 6_1:+26699882 None:intergenic
CAAAATGGTATCGCGGTGTG+CGG 0.584931 6_1:-26698100 Msa0880200:CDS
TGGAGAATCAAGTAAAGTTG+GGG 0.588040 6_1:-26697757 Msa0880200:three_prime_UTR
AATGGTATCGCGGTGTGCGG+CGG 0.590801 6_1:-26698097 Msa0880200:CDS
GAATCAAGTAAAGTTGGGGT+AGG 0.591713 6_1:-26697753 Msa0880200:three_prime_UTR
TATAGAGTTCTGAAAATAGG+AGG 0.592372 6_1:-26698272 Msa0880200:CDS
TATGCTGCAATATAACTAAG+TGG 0.595980 6_1:+26700020 None:intergenic
TATCGGTCCGCATAATCAGT+TGG 0.596748 6_1:+26699324 None:intergenic
TATTAAGTTCTACAACTCCA+TGG 0.596798 6_1:-26699865 Msa0880200:exon
AATACAGTCGTATTTAGATG+TGG 0.605074 6_1:+26697373 None:intergenic
TGTGGTCAAACATTGACTCA+TGG 0.611013 6_1:+26697391 None:intergenic
CGAGTTGTGGATGTTGGAGG+AGG 0.623443 6_1:-26699501 Msa0880200:CDS
AGCACCACTAAGCATTAAGG+AGG 0.625927 6_1:+26699842 None:intergenic
TGACCGGAGAATGCGAGTTG+TGG 0.630299 6_1:-26699514 Msa0880200:CDS
TGACAGAACAACCCATGATG+AGG 0.635531 6_1:+26698069 None:intergenic
GTGGATGCTCTTCCCTAAGG+AGG 0.637523 6_1:-26698186 Msa0880200:CDS
TCATAGAAATGAGACATGGA+TGG 0.640099 6_1:+26699945 None:intergenic
GCTTCTTTAATGCCACGCTG+TGG 0.647758 6_1:+26698296 None:intergenic
AGCCTTGAGAGAAACACCAA+TGG 0.656851 6_1:+26697882 None:intergenic
GTATTCTATAGTACCTGAAG+GGG 0.660431 6_1:+26698017 None:intergenic
AGGCTGAGAAGAAGGCCTTG+CGG 0.675664 6_1:+26699668 None:intergenic
ATAGGTCCAAAATGGTATCG+CGG 0.700687 6_1:-26698107 Msa0880200:CDS
ATGTGATAGCAATACCTCAG+TGG 0.708177 6_1:-26700111 Msa0880200:five_prime_UTR
TATATCATAGAAATGAGACA+TGG 0.715108 6_1:+26699941 None:intergenic
TGTTGTTCCATTCACCACTG+AGG 0.726264 6_1:+26700097 None:intergenic
TACTGGCCTGATCCACAGCG+TGG 0.734098 6_1:-26698308 Msa0880200:CDS
CACCACATAATACATGTGAG+TGG 0.746020 6_1:+26700048 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTGGATTTTTCTATTTTT+TGG + chr6_1:26697352-26697371 None:intergenic 15.0%
!!! TTATTTTAAGTTAAAAGACT+AGG - chr6_1:26698297-26698316 Msa0880200:CDS 15.0%
!!! ATCTTTTTGTTTTACTTAAT+AGG - chr6_1:26698487-26698506 Msa0880200:intron 15.0%
!! TTATAAAATGTCATTCAAAA+TGG - chr6_1:26698587-26698606 Msa0880200:intron 15.0%
!!! GATTTACTTTTCAAAATTAA+TGG - chr6_1:26699803-26699822 Msa0880200:CDS 15.0%
!! TTACTTAAATTTAAGTGTTA+CGG - chr6_1:26700208-26700227 Msa0880200:five_prime_UTR 15.0%
!!! TTTTTGGTACATTTTATTAG+AGG + chr6_1:26697336-26697355 None:intergenic 20.0%
!!! TATAAAAGTGTTAATTTCCT+TGG - chr6_1:26697597-26697616 Msa0880200:three_prime_UTR 20.0%
!! TATGATCATATAATAAATCC+AGG - chr6_1:26697908-26697927 Msa0880200:CDS 20.0%
!! AAAGAATGTAAGATAATTGA+AGG - chr6_1:26698127-26698146 Msa0880200:CDS 20.0%
!!! AAATGAAAAGACATCTTTTA+TGG - chr6_1:26698457-26698476 Msa0880200:intron 20.0%
!!! GTTTTACTTAATAGGAAAAT+TGG - chr6_1:26698495-26698514 Msa0880200:intron 20.0%
!!! CTAATTTGTCTATGAAATTT+AGG - chr6_1:26698722-26698741 Msa0880200:intron 20.0%
!! AAATGAGTAAATAGACAAAT+TGG + chr6_1:26699019-26699038 None:intergenic 20.0%
!! TTATGTTACATTGATACATA+AGG + chr6_1:26699144-26699163 None:intergenic 20.0%
!! GTATATTGAATGGTTTAAAA+AGG - chr6_1:26699337-26699356 Msa0880200:CDS 20.0%
!! AATATTTAAAGAACTGTAGA+AGG + chr6_1:26699506-26699525 None:intergenic 20.0%
!! ATGTCAACAAATTAACATTA+TGG + chr6_1:26699845-26699864 None:intergenic 20.0%
!! TTTGAACATTGTTTATTTGA+AGG - chr6_1:26699924-26699943 Msa0880200:five_prime_UTR 20.0%
! AAAATTTGTGAAGATATGTC+TGG - chr6_1:26697278-26697297 Msa0880200:three_prime_UTR 25.0%
! TATATCATAGAAATGAGACA+TGG + chr6_1:26697558-26697577 None:intergenic 25.0%
! TTAATACTAAGATTCTTCCA+AGG + chr6_1:26697617-26697636 None:intergenic 25.0%
! AGAAATAATGCAGTTTCATA+TGG - chr6_1:26697758-26697777 Msa0880200:three_prime_UTR 25.0%
! TGTATATACTGCAAGATTTA+TGG - chr6_1:26698259-26698278 Msa0880200:CDS 25.0%
!! ATATTTTGTCCTATGATCAT+AGG + chr6_1:26698432-26698451 None:intergenic 25.0%
!! CAATTTTGAATGACATATCA+TGG + chr6_1:26698652-26698671 None:intergenic 25.0%
! CATGATATGTCATTCAAAAT+TGG - chr6_1:26698650-26698669 Msa0880200:intron 25.0%
! AGGTCAACTAAAGAAAAAAA+TGG - chr6_1:26698742-26698761 Msa0880200:intron 25.0%
!! TCTATTTACTCATTTTCTAG+AGG - chr6_1:26699024-26699043 Msa0880200:intron 25.0%
! CAACAAATTAACATTATGGA+AGG + chr6_1:26699841-26699860 None:intergenic 25.0%
!!! GTTAATTTGTTGACATGTTT+TGG - chr6_1:26699849-26699868 Msa0880200:CDS 25.0%
! GAATCGTAGTAAAATTTAAG+AGG + chr6_1:26699887-26699906 None:intergenic 25.0%
!!! ATTTTACTACGATTCTGAAA+TGG - chr6_1:26699892-26699911 Msa0880200:five_prime_UTR 25.0%
! TTATACCTATCCAATAAACT+TGG + chr6_1:26699981-26700000 None:intergenic 25.0%
! ACATGAAAAGCATAGTGTAT+TGG + chr6_1:26697369-26697388 None:intergenic 30.0%
TATGCTGCAATATAACTAAG+TGG + chr6_1:26697479-26697498 None:intergenic 30.0%
TGGTAAGGTACATAATGTTA+TGG + chr6_1:26697504-26697523 None:intergenic 30.0%
AACTGAAATGGAAAATGGTA+AGG + chr6_1:26697519-26697538 None:intergenic 30.0%
TTTGCAACTGAAATGGAAAA+TGG + chr6_1:26697524-26697543 None:intergenic 30.0%
! TTTGGAATTTGCAACTGAAA+TGG + chr6_1:26697531-26697550 None:intergenic 30.0%
TATTAAGTTCTACAACTCCA+TGG - chr6_1:26697631-26697650 Msa0880200:three_prime_UTR 30.0%
ATTAATAGCATAGTTCCATC+TGG - chr6_1:26697692-26697711 Msa0880200:three_prime_UTR 30.0%
AAAATGCTTCTTTCTTGTGT+TGG + chr6_1:26697862-26697881 None:intergenic 30.0%
!!! AACACAAGAAAGAAGCATTT+TGG - chr6_1:26697861-26697880 Msa0880200:CDS 30.0%
!!! AAGAAGCATTTTGGTTTTAC+AGG - chr6_1:26697870-26697889 Msa0880200:CDS 30.0%
ATATAATAAATCCAGGTCAC+TGG - chr6_1:26697915-26697934 Msa0880200:CDS 30.0%
TCTTGCAGTATATACAATGA+AGG + chr6_1:26698255-26698274 None:intergenic 30.0%
!! TTGACTTGTAAAGCTCAAAT+GGG + chr6_1:26698390-26698409 None:intergenic 30.0%
!! TTTGACTTGTAAAGCTCAAA+TGG + chr6_1:26698391-26698410 None:intergenic 30.0%
AATCTTAGTCCTATGATCAT+AGG - chr6_1:26698420-26698439 Msa0880200:intron 30.0%
!! TGACAAATTAGTCTTTAGTG+TGG - chr6_1:26698797-26698816 Msa0880200:intron 30.0%
TAGCTGTAAAAGCTAACATA+TGG - chr6_1:26698900-26698919 Msa0880200:intron 30.0%
! ACCGTCACTTAACAATTTTA+GGG - chr6_1:26698932-26698951 Msa0880200:intron 30.0%
TCCCTAAAATTGTTAAGTGA+CGG + chr6_1:26698936-26698955 None:intergenic 30.0%
!! ACTCATTTTCTAGAGGAAAA+TGG - chr6_1:26699031-26699050 Msa0880200:intron 30.0%
! TGTTGTTCAGTATTGAATAC+TGG - chr6_1:26699171-26699190 Msa0880200:intron 30.0%
!! GCATATAGAGTTCTGAAAAT+AGG - chr6_1:26699221-26699240 Msa0880200:intron 30.0%
!! TATAGAGTTCTGAAAATAGG+AGG - chr6_1:26699224-26699243 Msa0880200:intron 30.0%
ATTGAGACAACCAAAATGTT+GGG + chr6_1:26699277-26699296 None:intergenic 30.0%
AATTGAGACAACCAAAATGT+TGG + chr6_1:26699278-26699297 None:intergenic 30.0%
ATTGAATGGTTTAAAAAGGC+TGG - chr6_1:26699341-26699360 Msa0880200:CDS 30.0%
TGAAAAGAATAGGTCCAAAA+TGG - chr6_1:26699381-26699400 Msa0880200:CDS 30.0%
TGTATTCTATAGTACCTGAA+GGG + chr6_1:26699483-26699502 None:intergenic 30.0%
TACTAGTTCCAATTTACATG+TGG - chr6_1:26699669-26699688 Msa0880200:CDS 30.0%
TCTTTAAGCCACATGTAAAT+TGG + chr6_1:26699680-26699699 None:intergenic 30.0%
TAAAGACCAAATTGTTCCAA+AGG - chr6_1:26699694-26699713 Msa0880200:CDS 30.0%
AAAGACCAAATTGTTCCAAA+GGG - chr6_1:26699695-26699714 Msa0880200:CDS 30.0%
ATTGGAGAATCAAGTAAAGT+TGG - chr6_1:26699737-26699756 Msa0880200:CDS 30.0%
TTGGAGAATCAAGTAAAGTT+GGG - chr6_1:26699738-26699757 Msa0880200:CDS 30.0%
! TGTTTATTTGAAGGTTAGTC+AGG - chr6_1:26699933-26699952 Msa0880200:five_prime_UTR 30.0%
AGCATATAAGCCAAGTTTAT+TGG - chr6_1:26699968-26699987 Msa0880200:five_prime_UTR 30.0%
ATAAGCCAAGTTTATTGGAT+AGG - chr6_1:26699973-26699992 Msa0880200:five_prime_UTR 30.0%
AATACAGTCGTATTTAGATG+TGG + chr6_1:26700126-26700145 None:intergenic 30.0%
TACCTGAAAAAAAACTCACA+TGG + chr6_1:26700166-26700185 None:intergenic 30.0%
!! TTTTATTAGAGGCACAGCTA+AGG + chr6_1:26697325-26697344 None:intergenic 35.0%
TCATAGAAATGAGACATGGA+TGG + chr6_1:26697554-26697573 None:intergenic 35.0%
TTCTTGTGTTGGATGAATCT+AGG + chr6_1:26697851-26697870 None:intergenic 35.0%
TCCATTTCCAACTGATTATG+CGG - chr6_1:26698165-26698184 Msa0880200:CDS 35.0%
AAGACTAGGTATGTGTTACA+TGG - chr6_1:26698311-26698330 Msa0880200:CDS 35.0%
! ACGGTTTGGACTCAAAATTA+AGG - chr6_1:26698335-26698354 Msa0880200:intron 35.0%
TTGGACTCAAAATTAAGGCA+TGG - chr6_1:26698340-26698359 Msa0880200:intron 35.0%
ACTCAAAATTAAGGCATGGT+TGG - chr6_1:26698344-26698363 Msa0880200:intron 35.0%
! AGTCCATCAATTTTGCGAAT+TGG - chr6_1:26698547-26698566 Msa0880200:intron 35.0%
TTGCCAATTCGCAAAATTGA+TGG + chr6_1:26698553-26698572 None:intergenic 35.0%
! TAGTGAGTTGACATTGATGT+GGG + chr6_1:26698698-26698717 None:intergenic 35.0%
! TTAGTGAGTTGACATTGATG+TGG + chr6_1:26698699-26698718 None:intergenic 35.0%
ACATCAATGTCAACTCACTA+AGG - chr6_1:26698698-26698717 Msa0880200:intron 35.0%
!! CAAATTAGTCTTTAGTGTGG+TGG - chr6_1:26698800-26698819 Msa0880200:intron 35.0%
! GACCGTCACTTAACAATTTT+AGG - chr6_1:26698931-26698950 Msa0880200:intron 35.0%
AACCAAAATGTTGGGTATAC+AGG + chr6_1:26699269-26699288 None:intergenic 35.0%
CAATATACTCTTCCTCCTTA+GGG + chr6_1:26699325-26699344 None:intergenic 35.0%
TCAATATACTCTTCCTCCTT+AGG + chr6_1:26699326-26699345 None:intergenic 35.0%
! AGGAGGAAGAGTATATTGAA+TGG - chr6_1:26699327-26699346 Msa0880200:CDS 35.0%
GATGTCAAGCTGAAAAGAAT+AGG - chr6_1:26699371-26699390 Msa0880200:CDS 35.0%
GTATTCTATAGTACCTGAAG+GGG + chr6_1:26699482-26699501 None:intergenic 35.0%
GTGTATTCTATAGTACCTGA+AGG + chr6_1:26699484-26699503 None:intergenic 35.0%
ATGCATGTCTTTATGTAGCT+TGG - chr6_1:26699557-26699576 Msa0880200:CDS 35.0%
! AGAAACACCAATGGATTTAC+AGG + chr6_1:26699608-26699627 None:intergenic 35.0%
TGGAACTAGTACATAGTAAG+TGG + chr6_1:26699660-26699679 None:intergenic 35.0%
AGGCGTATTTAATCGAAGAT+TGG - chr6_1:26699719-26699738 Msa0880200:CDS 35.0%
TGGAGAATCAAGTAAAGTTG+GGG - chr6_1:26699739-26699758 Msa0880200:CDS 35.0%
TCTGATGATTGATGTTCTCA+AGG - chr6_1:26699781-26699800 Msa0880200:CDS 35.0%
ATTATGGAAGGCAAAGTTCA+TGG + chr6_1:26699829-26699848 None:intergenic 35.0%
GATAGGTATAAAACATGTGC+TGG - chr6_1:26699990-26700009 Msa0880200:five_prime_UTR 35.0%
CAGACATGAAATCAGAAATC+AGG + chr6_1:26700020-26700039 None:intergenic 35.0%
CTGATTTCTGATTTCATGTC+TGG - chr6_1:26700018-26700037 Msa0880200:five_prime_UTR 35.0%
!!! GACCATGTGAGTTTTTTTTC+AGG - chr6_1:26700161-26700180 Msa0880200:five_prime_UTR 35.0%
GCTAAGGAGTTGTGGAATAT+GGG + chr6_1:26697309-26697328 None:intergenic 40.0%
AGCTAAGGAGTTGTGGAATA+TGG + chr6_1:26697310-26697329 None:intergenic 40.0%
ATGTGATAGCAATACCTCAG+TGG - chr6_1:26697385-26697404 Msa0880200:three_prime_UTR 40.0%
CACCACTCACATGTATTATG+TGG - chr6_1:26697446-26697465 Msa0880200:three_prime_UTR 40.0%
CACCACATAATACATGTGAG+TGG + chr6_1:26697451-26697470 None:intergenic 40.0%
GAAATGAGACATGGATGGTT+TGG + chr6_1:26697549-26697568 None:intergenic 40.0%
TTCAGCACCACTAAGCATTA+AGG + chr6_1:26697660-26697679 None:intergenic 40.0%
AGCATAGTTCCATCTGGATT+AGG - chr6_1:26697698-26697717 Msa0880200:three_prime_UTR 40.0%
ATGAATCTAGGCTGAGAAGA+AGG + chr6_1:26697839-26697858 None:intergenic 40.0%
TCCGCATAATCAGTTGGAAA+TGG + chr6_1:26698169-26698188 None:intergenic 40.0%
ACCTTCCAGCAGAAACATAT+CGG + chr6_1:26698192-26698211 None:intergenic 40.0%
TAGGTATGTGTTACATGGCA+CGG - chr6_1:26698316-26698335 Msa0880200:CDS 40.0%
TGATTCCATATCATGGCCAT+TGG + chr6_1:26698826-26698845 None:intergenic 40.0%
ATGGCCATGATATGGAATCA+AGG - chr6_1:26698826-26698845 Msa0880200:intron 40.0%
TCCACCTTGATTCCATATCA+TGG + chr6_1:26698833-26698852 None:intergenic 40.0%
ATGATATGGAATCAAGGTGG+AGG - chr6_1:26698832-26698851 Msa0880200:intron 40.0%
! GTCCTGTATACCCAACATTT+TGG - chr6_1:26699264-26699283 Msa0880200:intron 40.0%
CTCAATTCTTTGCAGACATG+TGG - chr6_1:26699291-26699310 Msa0880200:intron 40.0%
ATAGGTCCAAAATGGTATCG+CGG - chr6_1:26699389-26699408 Msa0880200:CDS 40.0%
! ACTGGTGTCAAACCTTTATC+AGG - chr6_1:26699449-26699468 Msa0880200:CDS 40.0%
CTTTATGTAGCTTGGTCCTA+AGG - chr6_1:26699565-26699584 Msa0880200:CDS 40.0%
TTCTGTACATCCTCTACCTT+AGG + chr6_1:26699584-26699603 None:intergenic 40.0%
ACAGAAGCCTGTAAATCCAT+TGG - chr6_1:26699598-26699617 Msa0880200:CDS 40.0%
! ATCCATTGGTGTTTCTCTCA+AGG - chr6_1:26699612-26699631 Msa0880200:CDS 40.0%
TTTCTCTCAAGGCTCATTCT+TGG - chr6_1:26699623-26699642 Msa0880200:CDS 40.0%
GAATCAAGTAAAGTTGGGGT+AGG - chr6_1:26699743-26699762 Msa0880200:CDS 40.0%
AAACTTGGCTTATATGCTGC+AGG + chr6_1:26699966-26699985 None:intergenic 40.0%
!! TGTGGTCAAACATTGACTCA+TGG + chr6_1:26700108-26700127 None:intergenic 40.0%
AGCAATACCTCAGTGGTGAA+TGG - chr6_1:26697392-26697411 Msa0880200:three_prime_UTR 45.0%
TGTTGTTCCATTCACCACTG+AGG + chr6_1:26697402-26697421 None:intergenic 45.0%
!! TACATGTGAGTGGTGCTGAT+TGG + chr6_1:26697441-26697460 None:intergenic 45.0%
ACTAAGCATTAAGGAGGCCA+TGG + chr6_1:26697651-26697670 None:intergenic 45.0%
ATGGCCTCCTTAATGCTTAG+TGG - chr6_1:26697650-26697669 Msa0880200:three_prime_UTR 45.0%
AGCACCACTAAGCATTAAGG+AGG + chr6_1:26697657-26697676 None:intergenic 45.0%
CTCACAGAACCTAATCCAGA+TGG + chr6_1:26697710-26697729 None:intergenic 45.0%
!! AGCCTGCTGATTTGTATGAC+CGG - chr6_1:26697966-26697985 Msa0880200:intron 45.0%
AGAATGCGAGTTGTGGATGT+TGG - chr6_1:26697989-26698008 Msa0880200:intron 45.0%
GGAACTGGATTCACTACTCT+TGG - chr6_1:26698016-26698035 Msa0880200:intron 45.0%
TATCGGTCCGCATAATCAGT+TGG + chr6_1:26698175-26698194 None:intergenic 45.0%
! ACCGATATGTTTCTGCTGGA+AGG - chr6_1:26698188-26698207 Msa0880200:CDS 45.0%
ATGTGTTACATGGCACGGTT+TGG - chr6_1:26698321-26698340 Msa0880200:intron 45.0%
TACTGCTAGAGACTATGACG+TGG - chr6_1:26698626-26698645 Msa0880200:intron 45.0%
GCCATGATATGGAATCAAGG+TGG - chr6_1:26698829-26698848 Msa0880200:intron 45.0%
TGACACCTCCACCAAATATG+TGG + chr6_1:26698868-26698887 None:intergenic 45.0%
TGACAGAACAACCCATGATG+AGG + chr6_1:26699430-26699449 None:intergenic 45.0%
! ATCATGGGTTGTTCTGTCAC+TGG - chr6_1:26699431-26699450 Msa0880200:CDS 45.0%
AGCCTTGAGAGAAACACCAA+TGG + chr6_1:26699617-26699636 None:intergenic 45.0%
ACCAAATTGTTCCAAAGGGC+AGG - chr6_1:26699699-26699718 Msa0880200:CDS 45.0%
GATTAAATACGCCTGCCCTT+TGG + chr6_1:26699713-26699732 None:intergenic 45.0%
ATGTCTTCAGTCCAGTGACC+TGG + chr6_1:26697929-26697948 None:intergenic 50.0%
CTCCGGTCATACAAATCAGC+AGG + chr6_1:26697971-26697990 None:intergenic 50.0%
CATCCACAACTCGCATTCTC+CGG + chr6_1:26697988-26698007 None:intergenic 50.0%
ATGCGAGTTGTGGATGTTGG+AGG - chr6_1:26697992-26698011 Msa0880200:intron 50.0%
TGATCAGTCTCCTCATCAGC+TGG - chr6_1:26698078-26698097 Msa0880200:CDS 50.0%
!! TTAGCCTTAGCCAGCTGATG+AGG + chr6_1:26698091-26698110 None:intergenic 50.0%
GCTGGCTAAGGCTAAGAAGA+AGG - chr6_1:26698096-26698115 Msa0880200:CDS 50.0%
GTCTTTAGTGTGGTGGCCAA+TGG - chr6_1:26698807-26698826 Msa0880200:intron 50.0%
ATGGAATCAAGGTGGAGGAC+AGG - chr6_1:26698837-26698856 Msa0880200:intron 50.0%
GACAGGAGGAGCCACATATT+TGG - chr6_1:26698854-26698873 Msa0880200:intron 50.0%
AGGAGGAGCCACATATTTGG+TGG - chr6_1:26698857-26698876 Msa0880200:intron 50.0%
! AGGAGCCACATATTTGGTGG+AGG - chr6_1:26698860-26698879 Msa0880200:intron 50.0%
TTAATGCCACGCTGTGGATC+AGG + chr6_1:26699197-26699216 None:intergenic 50.0%
GCTTCTTTAATGCCACGCTG+TGG + chr6_1:26699203-26699222 None:intergenic 50.0%
GGAGGCAAAGCGTGCATTAT+AGG - chr6_1:26699242-26699261 Msa0880200:intron 50.0%
CATGTGGATGCTCTTCCCTA+AGG - chr6_1:26699307-26699326 Msa0880200:intron 50.0%
CAAAATGGTATCGCGGTGTG+CGG - chr6_1:26699396-26699415 Msa0880200:CDS 50.0%
GTAGCTTGGTCCTAAGGTAG+AGG - chr6_1:26699571-26699590 Msa0880200:CDS 50.0%
!! GCCTGCCCTTTGGAACAATT+TGG + chr6_1:26699703-26699722 None:intergenic 50.0%
GAGGCACAGCTAAGGAGTTG+TGG + chr6_1:26697317-26697336 None:intergenic 55.0%
AGGCTGAGAAGAAGGCCTTG+CGG + chr6_1:26697831-26697850 None:intergenic 55.0%
TGACCGGAGAATGCGAGTTG+TGG - chr6_1:26697982-26698001 Msa0880200:intron 55.0%
CGAGTTGTGGATGTTGGAGG+AGG - chr6_1:26697995-26698014 Msa0880200:intron 55.0%
GTGGATGTTGGAGGAGGAAC+TGG - chr6_1:26698001-26698020 Msa0880200:intron 55.0%
GTCTCCTCATCAGCTGGCTA+AGG - chr6_1:26698084-26698103 Msa0880200:CDS 55.0%
! GCGGACCGATATGTTTCTGC+TGG - chr6_1:26698184-26698203 Msa0880200:CDS 55.0%
GGTGGCCAATGGCCATGATA+TGG - chr6_1:26698818-26698837 Msa0880200:intron 55.0%
GAATCAAGGTGGAGGACAGG+AGG - chr6_1:26698840-26698859 Msa0880200:intron 55.0%
GTGGATGCTCTTCCCTAAGG+AGG - chr6_1:26699310-26699329 Msa0880200:CDS 55.0%
! CGCACACCGCGATACCATTT+TGG + chr6_1:26699398-26699417 None:intergenic 55.0%
AGGGGAGAGTCGCCTGATAA+AGG + chr6_1:26699464-26699483 None:intergenic 55.0%
GATGCAGCGTCTCATCCGCA+AGG - chr6_1:26697813-26697832 Msa0880200:CDS 60.0%
! TACTGGCCTGATCCACAGCG+TGG - chr6_1:26699188-26699207 Msa0880200:intron 60.0%
AATGGTATCGCGGTGTGCGG+CGG - chr6_1:26699399-26699418 Msa0880200:CDS 60.0%
ATCAGGCGACTCTCCCCTTC+AGG - chr6_1:26699466-26699485 Msa0880200:CDS 60.0%
TATCGCGGTGTGCGGCGGCA+CGG - chr6_1:26699404-26699423 Msa0880200:CDS 70.0%
CGGCGGCACGGCCTCATCAT+GGG - chr6_1:26699416-26699435 Msa0880200:CDS 70.0%
GCGGCGGCACGGCCTCATCA+TGG - chr6_1:26699415-26699434 Msa0880200:CDS 75.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 26697271 26700247 26697271 ID=Msa0880200;Name=Msa0880200
chr6_1 mRNA 26697271 26700247 26697271 ID=Msa0880200-mRNA-1;Parent=Msa0880200;Name=Msa0880200-mRNA-1;_AED=0.02;_eAED=0.02;_QI=379|1|1|1|1|1|3|517|340
chr6_1 exon 26697271 26697943 26697271 ID=Msa0880200-mRNA-1:exon:6475;Parent=Msa0880200-mRNA-1
chr6_1 exon 26698031 26698337 26698031 ID=Msa0880200-mRNA-1:exon:6474;Parent=Msa0880200-mRNA-1
chr6_1 exon 26699309 26700247 26699309 ID=Msa0880200-mRNA-1:exon:6473;Parent=Msa0880200-mRNA-1
chr6_1 five_prime_UTR 26699869 26700247 26699869 ID=Msa0880200-mRNA-1:five_prime_utr;Parent=Msa0880200-mRNA-1
chr6_1 CDS 26699309 26699868 26699309 ID=Msa0880200-mRNA-1:cds;Parent=Msa0880200-mRNA-1
chr6_1 CDS 26698031 26698337 26698031 ID=Msa0880200-mRNA-1:cds;Parent=Msa0880200-mRNA-1
chr6_1 CDS 26697788 26697943 26697788 ID=Msa0880200-mRNA-1:cds;Parent=Msa0880200-mRNA-1
chr6_1 three_prime_UTR 26697271 26697787 26697271 ID=Msa0880200-mRNA-1:three_prime_utr;Parent=Msa0880200-mRNA-1
Gene Sequence

>Msa0880200

ATGGCCTCCTTAATGCTTAGTGGTGCTGAAAATACAAAGCTTATTAATAGCATAGTTCCATCTGGATTAGGTTCTGTGAGTCTTAACTTTCACAAGAAGTGTTTCATCAGAAATAATGCAGTTTCATATGGTAACAAATACAGTGCTAGAAACTTGACAGCGCGATGCAGCGTCTCATCCGCAAGGCCTTCTTCTCAGCCTAGATTCATCCAACACAAGAAAGAAGCATTTTGGTTTTACAGGTTTTTGTCAATTGTGTATGATCATATAATAAATCCAGGTCACTGGACTGAAGACATGAGAGATGATGCACTTGAGCCTGCTGATTTGTATGACCGGAGAATGCGAGTTGTGGATGTTGGAGGAGGAACTGGATTCACTACTCTTGGTATAGTGAAGCATGTTGATGCTAAAAATGTTACAATTCTTGATCAGTCTCCTCATCAGCTGGCTAAGGCTAAGAAGAAGGAAGCATTGAAAGAATGTAAGATAATTGAAGGTGATGCAGAAGATCTTCCATTTCCAACTGATTATGCGGACCGATATGTTTCTGCTGGAAGTATTGAATACTGGCCTGATCCACAGCGTGGCATTAAAGAAGCATATAGAGTTCTGAAAATAGGAGGCAAAGCGTGCATTATAGGTCCTGTATACCCAACATTTTGGTTGTCTCAATTCTTTGCAGACATGTGGATGCTCTTCCCTAAGGAGGAAGAGTATATTGAATGGTTTAAAAAGGCTGGTTTCAAAGATGTCAAGCTGAAAAGAATAGGTCCAAAATGGTATCGCGGTGTGCGGCGGCACGGCCTCATCATGGGTTGTTCTGTCACTGGTGTCAAACCTTTATCAGGCGACTCTCCCCTTCAGCTTGGTCCTAAGGTAGAGGATGTACAGAAGCCTGTAAATCCATTGGTGTTTCTCTCAAGGCTCATTCTTGGTACAATTGCAGCCACTTACTATGTACTAGTTCCAATTTACATGTGGCTTAAAGACCAAATTGTTCCAAAGGGCAGGCGTATTTAA

Protein sequence

>Msa0880200

MASLMLSGAENTKLINSIVPSGLGSVSLNFHKKCFIRNNAVSYGNKYSARNLTARCSVSSARPSSQPRFIQHKKEAFWFYRFLSIVYDHIINPGHWTEDMRDDALEPADLYDRRMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKKKEALKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACIIGPVYPTFWLSQFFADMWMLFPKEEEYIEWFKKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPLSGDSPLQLGPKVEDVQKPVNPLVFLSRLILGTIAATYYVLVPIYMWLKDQIVPKGRRI*