AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0501540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0501540 MtrunA17_Chr3g0099231 80.155 388 16 2 1 327 1 388 0.0 618
Msa0501540 MtrunA17_Chr3g0099161 59.834 361 82 4 1 298 64 424 9.16e-146 417
Msa0501540 MtrunA17_Chr3g0099151 57.967 364 89 5 1 300 59 422 7.51e-144 412
Msa0501540 MtrunA17_Chr5g0444401 53.448 348 100 3 13 298 13 360 1.53e-126 366
Msa0501540 MtrunA17_Chr3g0077571 27.824 363 191 5 1 300 3 357 1.10e-48 166
Msa0501540 MtrunA17_Chr4g0017431 27.168 346 180 5 21 300 24 363 9.71e-48 164
Msa0501540 MtrunA17_Chr8g0374101 30.137 365 180 8 7 297 10 373 3.59e-46 160
Msa0501540 MtrunA17_Chr4g0068441 27.473 364 189 7 2 299 13 367 4.02e-45 157
Msa0501540 MtrunA17_Chr1g0189901 29.609 358 175 8 9 298 13 361 2.94e-44 155
Msa0501540 MtrunA17_Chr2g0294301 28.415 366 186 7 4 298 6 366 1.28e-43 153
Msa0501540 MtrunA17_Chr7g0215961 29.825 342 176 8 14 298 16 350 1.77e-43 153
Msa0501540 MtrunA17_Chr5g0434621 26.727 333 172 6 15 282 12 337 3.43e-42 149
Msa0501540 MtrunA17_Chr7g0274991 27.976 336 172 4 28 298 33 363 5.50e-42 149
Msa0501540 MtrunA17_Chr7g0275021 27.701 361 184 7 9 298 10 364 9.09e-41 146
Msa0501540 MtrunA17_Chr8g0370951 26.912 353 189 7 16 301 19 369 1.02e-40 145
Msa0501540 MtrunA17_Chr8g0370981 27.250 400 177 9 9 298 22 417 1.47e-40 146
Msa0501540 MtrunA17_Chr4g0008851 28.022 364 189 7 2 298 7 364 2.84e-40 144
Msa0501540 MtrunA17_Chr1g0189931 28.333 360 180 7 8 298 12 362 1.15e-39 143
Msa0501540 MtrunA17_Chr2g0301641 28.530 347 166 7 28 302 43 379 1.68e-39 143
Msa0501540 MtrunA17_Chr3g0092131 26.036 338 181 5 9 281 3 336 2.66e-39 142
Msa0501540 MtrunA17_Chr3g0131321 27.123 365 190 8 4 297 7 366 3.45e-39 142
Msa0501540 MtrunA17_Chr7g0275001 28.319 339 168 5 28 298 25 356 4.09e-39 141
Msa0501540 MtrunA17_Chr4g0060811 25.633 316 167 5 30 281 29 340 1.73e-38 140
Msa0501540 MtrunA17_Chr3g0086641 28.319 339 177 6 25 300 35 370 7.20e-38 138
Msa0501540 MtrunA17_Chr2g0285061 27.493 371 192 8 1 300 1 365 1.73e-37 137
Msa0501540 MtrunA17_Chr1g0182811 27.811 338 172 8 28 298 33 365 4.66e-37 136
Msa0501540 MtrunA17_Chr2g0294311 26.437 348 175 6 27 299 31 372 8.30e-37 135
Msa0501540 MtrunA17_Chr7g0275011 27.059 340 176 5 28 301 34 367 1.11e-36 135
Msa0501540 MtrunA17_Chr8g0380041 26.822 343 177 7 25 300 28 363 1.62e-36 134
Msa0501540 MtrunA17_Chr2g0320671 28.693 352 170 12 2 281 1 343 2.00e-36 134
Msa0501540 MtrunA17_Chr5g0420811 27.635 351 167 11 4 282 1 336 4.16e-35 130
Msa0501540 MtrunA17_Chr6g0457921 27.147 361 184 8 10 298 7 360 4.49e-35 130
Msa0501540 MtrunA17_Chr1g0189891 28.011 357 182 9 7 298 8 354 9.05e-35 130
Msa0501540 MtrunA17_Chr8g0370961 35.948 153 96 1 147 297 90 242 1.60e-34 126
Msa0501540 MtrunA17_Chr8g0371491 28.443 334 155 11 16 277 24 345 6.47e-33 125
Msa0501540 MtrunA17_Chr1g0156921 27.492 331 167 8 26 289 40 364 2.05e-32 124
Msa0501540 MtrunA17_Chr8g0349331 27.193 342 196 9 1 299 1 332 4.75e-32 122
Msa0501540 MtrunA17_Chr2g0283191 27.586 348 167 11 4 271 8 350 6.34e-32 122
Msa0501540 MtrunA17_Chr8g0341001 26.989 352 180 11 1 281 1 346 1.10e-31 121
Msa0501540 MtrunA17_Chr4g0046151 26.722 363 174 10 8 284 10 366 4.32e-31 120
Msa0501540 MtrunA17_Chr3g0077581 25.731 342 184 7 22 297 30 367 3.58e-30 117
Msa0501540 MtrunA17_Chr8g0349321 26.471 374 190 11 1 299 1 364 1.79e-29 115
Msa0501540 MtrunA17_Chr8g0349341 26.786 336 172 8 28 298 37 363 2.11e-29 115
Msa0501540 MtrunA17_Chr5g0405821 26.074 326 171 7 24 283 39 360 3.01e-29 115
Msa0501540 MtrunA17_Chr5g0405831 27.019 322 160 10 24 277 39 353 3.31e-29 115
Msa0501540 MtrunA17_Chr1g0156931 27.654 358 176 9 1 281 1 352 1.02e-28 113
Msa0501540 MtrunA17_Chr2g0330781 27.545 334 166 10 18 281 18 345 1.73e-28 112
Msa0501540 MtrunA17_Chr8g0344931 24.926 337 185 8 24 300 33 361 2.11e-28 112
Msa0501540 MtrunA17_Chr5g0396511 24.629 337 179 8 30 298 48 377 3.58e-28 112
Msa0501540 MtrunA17_Chr5g0432101 27.414 321 159 9 25 277 30 344 1.26e-27 110
Msa0501540 MtrunA17_Chr8g0344941 26.852 324 162 11 28 283 41 357 1.40e-27 110
Msa0501540 MtrunA17_Chr5g0438641 25.387 323 167 9 23 278 27 342 1.99e-26 107
Msa0501540 MtrunA17_Chr3g0085881 25.439 342 175 8 23 300 28 353 8.93e-26 105
Msa0501540 MtrunA17_Chr4g0027521 25.153 326 167 10 26 281 25 343 1.03e-25 105
Msa0501540 MtrunA17_Chr1g0156911 26.959 319 158 8 27 278 36 346 1.27e-25 105
Msa0501540 MtrunA17_Chr5g0438621 24.843 318 175 7 26 281 28 343 1.59e-25 104
Msa0501540 MtrunA17_Chr5g0438631 26.543 324 163 10 26 281 26 342 1.83e-25 104
Msa0501540 MtrunA17_Chr3g0105401 23.276 348 194 8 1 281 1 342 3.54e-25 103
Msa0501540 MtrunA17_Chr8g0380031 22.849 372 189 11 2 298 56 404 1.44e-24 102
Msa0501540 MtrunA17_Chr1g0189911 34.266 143 91 1 159 298 2 144 3.17e-24 96.3
Msa0501540 MtrunA17_Chr3g0085231 24.118 340 175 8 26 300 29 350 1.23e-23 99.8
Msa0501540 MtrunA17_Chr5g0437421 24.688 320 176 8 25 279 29 348 3.08e-23 98.6
Msa0501540 MtrunA17_Chr1g0156901 25.648 347 175 10 4 278 24 359 6.13e-23 97.8
Msa0501540 MtrunA17_Chr3g0120861 23.100 329 177 7 21 281 31 351 8.62e-23 97.4
Msa0501540 MtrunA17_Chr6g0455661 30.688 189 125 5 116 300 286 472 1.48e-22 97.8
Msa0501540 MtrunA17_Chr6g0459921 33.333 156 100 4 147 300 208 361 1.61e-22 96.7
Msa0501540 MtrunA17_Chr1g0156891 26.844 339 177 8 10 278 16 353 4.77e-22 95.5
Msa0501540 MtrunA17_Chr3g0142941 25.552 317 167 9 26 278 45 356 8.80e-22 94.7
Msa0501540 MtrunA17_Chr3g0142921 25.466 322 166 8 27 281 35 349 2.72e-21 93.2
Msa0501540 MtrunA17_Chr2g0285001 22.487 378 202 10 1 302 1 363 3.74e-21 92.8
Msa0501540 MtrunA17_Chr8g0371471 25.543 368 173 14 1 281 1 354 6.03e-21 92.0
Msa0501540 MtrunA17_Chr6g0450731 26.606 327 161 9 27 284 32 348 1.41e-20 91.3
Msa0501540 MtrunA17_Chr2g0284951 23.306 369 192 12 7 302 7 357 1.71e-20 90.9
Msa0501540 MtrunA17_Chr8g0371481 24.398 332 162 10 27 283 40 357 1.83e-20 90.9
Msa0501540 MtrunA17_Chr7g0229581 30.216 139 93 2 147 281 8 146 8.45e-19 82.0
Msa0501540 MtrunA17_Chr2g0284991 22.159 352 193 9 25 308 30 368 1.46e-18 85.5
Msa0501540 MtrunA17_Chr4g0027571 29.371 143 97 2 143 281 71 213 6.45e-18 81.3
Msa0501540 MtrunA17_Chr8g0349301 24.188 277 148 7 28 248 37 307 7.07e-18 82.8
Msa0501540 MtrunA17_Chr1g0160011 25.959 339 162 13 27 284 39 369 8.62e-18 83.2
Msa0501540 MtrunA17_Chr7g0226941 26.361 349 165 14 27 292 32 371 1.27e-17 82.8
Msa0501540 MtrunA17_Chr7g0228261 38.750 80 49 0 219 298 11 90 1.62e-17 76.6
Msa0501540 MtrunA17_Chr7g0226911 23.834 386 176 13 2 284 1 371 1.91e-17 82.4
Msa0501540 MtrunA17_Chr7g0226931 24.021 383 188 15 1 284 7 385 2.41e-17 82.0
Msa0501540 MtrunA17_Chr2g0284941 23.362 351 165 11 25 306 30 345 2.68e-17 81.6
Msa0501540 MtrunA17_Chr1g0157001 23.926 326 188 6 33 299 41 365 3.75e-17 81.3
Msa0501540 MtrunA17_Chr5g0440501 28.221 163 106 3 147 298 87 249 4.74e-17 79.3
Msa0501540 MtrunA17_Chr4g0018571 29.936 157 104 3 129 281 15 169 8.04e-17 77.0
Msa0501540 MtrunA17_Chr4g0057991 24.047 341 168 13 29 291 40 367 1.49e-16 79.7
Msa0501540 MtrunA17_Chr7g0271551 30.128 156 96 5 147 291 203 356 1.76e-16 79.3
Msa0501540 MtrunA17_Chr7g0275291 27.513 189 109 5 129 291 181 367 2.07e-16 79.3
Msa0501540 MtrunA17_Chr1g0159991 26.225 347 165 14 27 291 35 372 3.68e-16 78.6
Msa0501540 MtrunA17_Chr1g0160031 26.331 338 162 12 27 284 38 368 1.16e-15 77.0
Msa0501540 MtrunA17_Chr2g0301581 25.496 353 169 14 9 285 13 347 6.20e-15 74.7
Msa0501540 MtrunA17_Chr6g0450721 26.901 171 113 4 120 284 182 346 8.56e-15 74.3
Msa0501540 MtrunA17_Chr1g0160101 29.341 167 99 5 147 294 219 385 2.31e-14 73.2
Msa0501540 MtrunA17_Chr3g0104821 25.148 338 166 12 28 285 44 374 9.29e-14 71.6
Msa0501540 MtrunA17_Chr8g0347751 28.000 175 105 7 130 284 196 369 1.13e-13 71.2
Msa0501540 MtrunA17_Chr2g0301541 25.496 353 169 14 9 285 13 347 1.88e-13 70.5
Msa0501540 MtrunA17_Chr1g0159981 30.189 159 91 5 151 291 226 382 2.40e-13 70.1
Msa0501540 MtrunA17_Chr6g0450711 23.235 340 167 9 27 284 121 448 2.93e-13 70.1
Msa0501540 MtrunA17_Chr6g0450701 23.967 363 188 14 1 284 12 365 8.75e-13 68.6
Msa0501540 MtrunA17_Chr3g0093031 24.633 341 171 13 28 290 30 362 1.23e-12 68.2
Msa0501540 MtrunA17_Chr2g0283511 24.662 296 164 11 50 291 76 366 1.24e-12 68.2
Msa0501540 MtrunA17_Chr3g0112821 24.702 336 172 12 28 290 30 357 1.71e-12 67.4
Msa0501540 MtrunA17_Chr2g0301551 26.667 285 136 11 56 285 37 303 4.34e-12 65.9
Msa0501540 MtrunA17_Chr2g0301571 26.667 285 136 11 56 285 37 303 1.29e-11 64.7
Msa0501540 MtrunA17_Chr3g0104831 29.348 184 111 6 121 285 110 293 1.39e-11 64.3
Msa0501540 MtrunA17_Chr7g0273101 24.623 199 127 4 114 291 170 366 3.13e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0501540 AT5G55050.1 39.823 339 137 7 26 298 37 374 4.31e-67 215
Msa0501540 AT5G37690.2 30.968 310 152 5 29 282 28 331 1.62e-51 174
Msa0501540 AT5G37690.1 29.874 318 153 5 29 282 28 339 1.05e-49 169
Msa0501540 AT3G50400.1 30.028 363 176 9 8 297 14 371 5.08e-44 155
Msa0501540 AT3G04290.1 28.846 364 186 7 7 304 9 365 2.50e-43 153
Msa0501540 AT1G71691.2 27.381 336 172 7 26 297 53 380 1.48e-41 149
Msa0501540 AT1G71250.1 28.363 342 173 6 25 299 38 374 9.85e-41 146
Msa0501540 AT5G08460.1 27.222 360 185 7 10 297 28 382 1.89e-40 146
Msa0501540 AT5G33370.1 29.118 340 169 6 28 301 30 363 2.25e-39 142
Msa0501540 AT1G29660.1 28.169 355 181 8 14 300 16 364 2.50e-39 142
Msa0501540 AT2G23540.1 28.158 380 183 11 3 297 10 384 3.68e-38 140
Msa0501540 AT5G18430.1 27.224 371 189 9 2 300 1 362 2.69e-37 137
Msa0501540 AT4G28780.1 28.024 339 172 7 28 300 31 363 6.28e-37 136
Msa0501540 AT4G10950.2 26.979 341 176 8 26 299 69 403 3.49e-36 135
Msa0501540 AT1G74460.1 25.223 337 182 5 9 281 6 336 2.03e-35 132
Msa0501540 AT4G10950.1 27.003 337 177 8 26 299 69 399 2.86e-35 132
Msa0501540 AT1G71691.1 25.806 279 158 4 61 297 8 279 4.18e-35 129
Msa0501540 AT1G53920.1 27.954 347 170 10 26 300 46 384 6.59e-35 131
Msa0501540 AT1G29670.1 27.500 360 185 9 11 300 10 363 1.03e-34 130
Msa0501540 AT1G29670.2 27.500 360 185 9 11 300 78 431 3.31e-34 130
Msa0501540 AT5G15720.1 26.844 339 176 7 26 297 28 361 4.34e-34 128
Msa0501540 AT1G33811.1 26.685 371 185 12 9 300 8 370 1.20e-33 127
Msa0501540 AT1G20120.1 27.726 321 160 9 27 281 77 391 3.88e-33 127
Msa0501540 AT3G53100.1 28.490 351 172 10 1 281 1 342 7.48e-33 125
Msa0501540 AT5G45670.1 26.377 345 189 8 1 282 1 343 1.22e-32 124
Msa0501540 AT4G18970.1 25.294 340 185 10 26 300 26 361 2.17e-32 124
Msa0501540 AT5G22810.1 30.120 332 154 12 21 281 26 350 2.30e-32 124
Msa0501540 AT1G53990.1 25.737 373 199 9 1 302 1 366 4.02e-32 123
Msa0501540 AT2G30310.1 31.090 312 145 12 27 272 33 340 4.91e-32 123
Msa0501540 AT4G18970.2 25.294 340 185 10 26 300 26 361 5.10e-32 124
Msa0501540 AT1G75880.1 28.483 323 162 6 26 283 50 368 2.69e-31 121
Msa0501540 AT3G16370.1 28.743 334 163 10 15 281 19 344 3.98e-31 120
Msa0501540 AT1G75890.2 27.439 328 161 7 24 282 43 362 1.65e-30 119
Msa0501540 AT1G75890.3 27.744 328 160 7 24 282 72 391 2.06e-30 119
Msa0501540 AT1G20130.1 27.964 329 158 10 22 277 198 520 7.66e-30 119
Msa0501540 AT1G75880.2 28.483 323 161 7 26 283 50 367 8.74e-30 117
Msa0501540 AT1G20130.2 27.964 329 158 10 22 277 178 500 1.10e-29 119
Msa0501540 AT5G45960.1 26.562 320 155 9 24 271 43 354 1.14e-29 117
Msa0501540 AT5G03820.1 27.035 344 174 9 7 281 13 348 1.45e-29 116
Msa0501540 AT5G03820.2 27.035 344 174 9 7 281 41 376 4.09e-29 115
Msa0501540 AT1G75900.1 26.377 345 177 10 7 283 22 357 4.48e-29 115
Msa0501540 AT1G75890.1 27.003 337 164 7 24 282 43 375 5.02e-29 115
Msa0501540 AT2G04570.1 27.143 350 181 10 1 283 1 343 8.08e-29 114
Msa0501540 AT1G20132.1 27.160 324 166 10 24 282 57 375 8.65e-29 114
Msa0501540 AT5G40990.1 25.507 345 179 7 28 301 37 374 2.83e-28 113
Msa0501540 AT5G42170.1 28.438 320 158 10 26 281 48 360 4.36e-28 112
Msa0501540 AT1G71120.1 26.347 334 183 8 23 297 26 355 6.13e-28 112
Msa0501540 AT2G31540.1 28.097 331 163 13 27 287 34 359 1.94e-27 110
Msa0501540 AT1G53940.2 27.826 345 171 11 28 301 39 376 2.93e-27 110
Msa0501540 AT2G40250.1 26.087 322 162 6 26 277 34 349 3.40e-27 110
Msa0501540 AT2G30220.1 27.445 317 156 11 27 275 32 342 1.22e-26 108
Msa0501540 AT3G14225.1 23.988 346 185 8 28 300 37 377 1.31e-26 108
Msa0501540 AT5G15720.3 25.784 287 161 5 58 297 49 330 1.51e-26 107
Msa0501540 AT1G06990.1 24.251 334 174 8 14 277 23 347 1.73e-26 107
Msa0501540 AT3G14225.2 24.419 344 182 8 28 300 37 373 2.10e-26 107
Msa0501540 AT5G41890.1 26.099 364 185 10 12 297 15 372 2.63e-26 107
Msa0501540 AT2G24560.1 26.752 314 158 11 27 273 33 341 1.46e-25 105
Msa0501540 AT5G03810.1 27.160 324 161 11 26 281 28 344 1.57e-25 105
Msa0501540 AT1G75920.2 26.608 342 159 10 12 281 13 334 3.23e-25 104
Msa0501540 AT2G42990.1 26.061 330 168 11 21 282 21 342 3.50e-25 104
Msa0501540 AT1G58430.1 26.537 309 165 10 27 273 34 342 4.80e-25 103
Msa0501540 AT5G45950.1 25.237 317 167 9 26 280 38 346 7.69e-25 103
Msa0501540 AT4G26790.1 23.529 323 175 7 25 281 26 342 2.99e-24 101
Msa0501540 AT4G26790.2 23.529 323 175 7 25 281 26 342 2.99e-24 101
Msa0501540 AT2G31550.1 35.664 143 87 3 144 281 67 209 3.22e-24 98.6
Msa0501540 AT3G14820.1 24.713 348 187 11 2 281 1 341 8.19e-24 100
Msa0501540 AT1G75910.1 28.406 345 154 14 9 281 11 334 1.10e-23 100
Msa0501540 AT1G75920.1 25.490 357 159 11 12 281 8 344 4.75e-23 98.2
Msa0501540 AT4G16233.1 33.594 128 84 1 176 302 5 132 1.04e-22 92.4
Msa0501540 AT1G54030.1 25.397 315 184 11 29 298 53 361 1.87e-22 97.4
Msa0501540 AT1G20135.1 24.839 310 163 7 28 278 29 327 1.89e-22 96.3
Msa0501540 AT4G30140.1 25.519 337 177 12 22 299 27 348 3.68e-22 95.9
Msa0501540 AT1G59406.1 27.457 346 170 13 11 283 5 342 6.42e-22 95.1
Msa0501540 AT1G59030.1 27.457 346 170 13 11 283 5 342 6.42e-22 95.1
Msa0501540 AT1G58725.1 27.457 346 170 13 11 283 5 342 6.42e-22 95.1
Msa0501540 AT1G75920.3 25.552 317 163 9 12 281 13 303 1.11e-21 94.0
Msa0501540 AT2G03980.2 28.617 311 148 11 27 271 42 344 2.60e-21 93.6
Msa0501540 AT2G03980.3 28.617 311 148 11 27 271 42 344 2.60e-21 93.6
Msa0501540 AT2G03980.1 28.617 311 148 11 27 271 42 344 2.60e-21 93.6
Msa0501540 AT2G03980.4 28.617 311 148 11 27 271 42 344 2.60e-21 93.6
Msa0501540 AT2G19060.1 24.332 337 177 14 21 294 23 344 6.43e-21 92.4
Msa0501540 AT5G63170.1 25.075 335 163 13 4 271 6 319 1.82e-20 90.9
Msa0501540 AT1G54000.1 25.305 328 182 10 26 297 34 354 4.56e-20 90.5
Msa0501540 AT1G58520.3 27.245 323 155 13 26 283 28 335 8.80e-20 89.0
Msa0501540 AT1G58525.1 27.245 323 155 13 26 283 28 335 8.80e-20 89.0
Msa0501540 AT1G75930.1 24.924 329 173 11 12 277 13 330 2.06e-19 87.8
Msa0501540 AT3G14220.1 23.684 342 206 12 9 298 13 351 4.39e-19 87.4
Msa0501540 AT1G54010.1 24.355 349 198 12 8 298 15 355 1.07e-18 86.3
Msa0501540 AT2G19010.2 22.222 324 176 10 23 284 55 364 1.90e-18 85.5
Msa0501540 AT2G19010.1 22.222 324 176 10 23 284 25 334 3.89e-18 84.3
Msa0501540 AT1G75920.4 26.749 243 118 7 86 281 77 306 4.24e-18 84.0
Msa0501540 AT3G48460.1 23.529 340 173 12 29 291 39 368 1.23e-17 83.2
Msa0501540 AT1G73610.1 26.801 347 147 16 3 271 8 325 1.66e-17 82.4
Msa0501540 AT1G23500.1 28.169 142 88 3 147 284 208 339 5.87e-16 78.2
Msa0501540 AT5G14450.1 23.032 343 170 12 27 284 40 373 7.64e-16 78.2
Msa0501540 AT1G54020.2 23.077 338 186 11 21 298 24 347 1.12e-15 77.4
Msa0501540 AT5G33370.2 25.468 267 127 6 28 228 30 290 4.06e-15 75.5
Msa0501540 AT3G62280.1 28.977 176 108 6 131 293 188 359 6.37e-15 75.1
Msa0501540 AT3G27950.1 22.626 358 185 11 11 284 8 357 6.93e-15 75.1
Msa0501540 AT4G16230.1 27.632 228 94 7 21 182 23 245 1.12e-14 73.2
Msa0501540 AT1G28650.1 26.525 377 181 16 1 292 7 372 1.20e-14 74.3
Msa0501540 AT1G56670.1 29.932 147 92 3 146 281 209 355 1.67e-14 73.9
Msa0501540 AT1G54790.3 23.978 367 186 15 8 291 13 369 1.85e-14 73.9
Msa0501540 AT4G01130.3 26.425 193 116 4 122 288 93 285 5.78e-14 71.6
Msa0501540 AT1G54020.4 25.000 180 129 3 123 298 35 212 7.15e-14 70.5
Msa0501540 AT1G28610.2 26.211 351 167 14 22 291 25 364 8.13e-14 72.0
Msa0501540 AT4G01130.1 26.425 193 116 4 122 288 179 371 1.18e-13 71.6
Msa0501540 AT1G54020.1 25.000 180 129 3 123 298 84 261 1.31e-13 70.5
Msa0501540 AT1G54020.5 25.000 180 129 3 123 298 84 261 1.31e-13 70.5
Msa0501540 AT1G54020.3 25.000 180 129 3 123 298 84 261 1.31e-13 70.5
Msa0501540 AT1G09390.1 28.205 156 99 4 147 291 207 360 5.32e-13 69.3
Msa0501540 AT3G14210.1 24.419 344 177 15 23 298 29 357 7.46e-13 69.3
Msa0501540 AT1G54790.1 23.306 369 189 15 8 291 9 368 9.92e-13 68.9
Msa0501540 AT3G05180.1 26.316 171 104 5 146 294 209 379 2.85e-12 67.4
Msa0501540 AT3G14210.2 27.419 186 122 7 123 298 47 229 1.14e-11 64.7
Msa0501540 AT1G54030.2 25.630 238 128 10 29 221 53 286 2.61e-11 63.9

Find 58 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAACTGAACTTACATAATT+TGG 0.132540 3_4:+42843515 None:intergenic
AAACCTTCACTCCATGTTAA+AGG 0.251588 3_4:-42842097 Msa0501540:CDS
ATATTTAACTGACAATAAAT+TGG 0.254327 3_4:+42842125 None:intergenic
GTATGAGTAACTTAAGTTCT+TGG 0.261236 3_4:+42842059 None:intergenic
ATACACATCTCCTGTTAATA+TGG 0.273274 3_4:-42841737 Msa0501540:CDS
GGTGGTGCTGGAATATTTAA+AGG 0.285187 3_4:-42843545 Msa0501540:CDS
TCTTTCTTCATCTTAAGTTT+AGG 0.311509 3_4:-42844328 Msa0501540:CDS
ATAGACAAGACCATATCTTT+TGG 0.336790 3_4:-42841828 Msa0501540:CDS
AACTTTGCCTCTGGTGGTGC+TGG 0.348127 3_4:-42843557 Msa0501540:CDS
GTTCCTGCTGTTTACGTGTT+TGG 0.359325 3_4:-42844286 Msa0501540:CDS
CCTCTCTCTAGCATCTTCTA+AGG 0.361160 3_4:-42843615 Msa0501540:CDS
GCTTCATATTAAGAAATTGA+TGG 0.374726 3_4:+42841492 None:intergenic
AAAGATATGGTCTTGTCTAT+TGG 0.388766 3_4:+42841831 None:intergenic
AGTAGCTCTTCCATATTAAC+AGG 0.400012 3_4:+42841727 None:intergenic
GAAGAATCGACAAAGCAAAT+AGG 0.417938 3_4:-42842692 Msa0501540:CDS
GGAAACAATGATTACTTGAA+TGG 0.427461 3_4:-42844244 Msa0501540:CDS
CATGTTAAAGGAATGGCAAT+TGG 0.427882 3_4:-42842085 Msa0501540:CDS
ATTGTCGATAGACTTTATAA+TGG 0.436718 3_4:-42841769 Msa0501540:CDS
AGGATTCTTAGAAGCTCAAA+AGG 0.440544 3_4:-42844308 Msa0501540:CDS
GCAAGGAGATTCGAGATTGC+TGG 0.448718 3_4:-42842213 Msa0501540:CDS
TTGGATTCTGAATGAGGTCT+TGG 0.448841 3_4:+42842016 None:intergenic
GGACTGAATCCCAAAAGATA+TGG 0.451724 3_4:+42841818 None:intergenic
AAAGCTGCATGTTGTGGAAT+TGG 0.456571 3_4:-42841901 Msa0501540:CDS
AGTGGTGTTAACTTTGCCTC+TGG 0.462882 3_4:-42843566 Msa0501540:CDS
GAAGAAAGAGATAAAGAGAA+AGG 0.475686 3_4:+42844342 None:intergenic
CAATTGCCATTCCTTTAACA+TGG 0.483611 3_4:+42842086 None:intergenic
GTGATAATACCATGAGAAGT+TGG 0.483668 3_4:+42841997 None:intergenic
GGAAAATCAATACCATAGTA+AGG 0.489381 3_4:+42844199 None:intergenic
ATTGCTGGCGTGGCTGCAAT+CGG 0.491625 3_4:-42842198 Msa0501540:CDS
GCCAATCACAACAAAGAAGA+TGG 0.499649 3_4:+42842637 None:intergenic
GGTGTTAACTTTGCCTCTGG+TGG 0.510704 3_4:-42843563 Msa0501540:CDS
GGTGACTCACTTGTTGATGT+TGG 0.515859 3_4:-42844265 Msa0501540:CDS
GATGCTAGAGAGAGGTATGG+TGG 0.518679 3_4:+42843623 None:intergenic
GAAGATGCTAGAGAGAGGTA+TGG 0.527555 3_4:+42843620 None:intergenic
ATTCAGAATCCAACTTCTCA+TGG 0.531711 3_4:-42842006 Msa0501540:intron
TTGTTCTTAAGCCTCAATGT+AGG 0.542501 3_4:+42842168 None:intergenic
ATGTTTGCACTTGGTAAACA+TGG 0.553043 3_4:+42841859 None:intergenic
AAAGTTAACACCACTCAAGA+AGG 0.556148 3_4:+42843574 None:intergenic
AATACATTTAACAAAGCAAG+TGG 0.558076 3_4:-42842735 Msa0501540:CDS
TTGGTACAAATGTTTGCACT+TGG 0.559430 3_4:+42841850 None:intergenic
GAGAAGTTGGATTCTGAATG+AGG 0.559748 3_4:+42842010 None:intergenic
TTCACTCCATGTTAAAGGAA+TGG 0.568239 3_4:-42842092 Msa0501540:CDS
TCGGATGTTGTCCTACATTG+AGG 0.568542 3_4:-42842179 Msa0501540:CDS
GAGATTCGAGATTGCTGGCG+TGG 0.575105 3_4:-42842208 Msa0501540:CDS
ATTCCTTTAACATGGAGTGA+AGG 0.588758 3_4:+42842094 None:intergenic
TCACCAAACACGTAAACAGC+AGG 0.589080 3_4:+42844283 None:intergenic
ATGCGAGTTACTGCCTCAGT+AGG 0.597608 3_4:+42841793 None:intergenic
GGTATGGTGGTGAAGTTGCA+AGG 0.604428 3_4:+42843636 None:intergenic
ACAGGAGATGTGTATTGTGA+CGG 0.626006 3_4:+42841745 None:intergenic
CCTTAGAAGATGCTAGAGAG+AGG 0.626625 3_4:+42843615 None:intergenic
GAGTTACTGCCTCAGTAGGA+TGG 0.632248 3_4:+42841797 None:intergenic
ATTCTGAATGAGGTCTTGGA+TGG 0.637285 3_4:+42842020 None:intergenic
AAGAATGTATCCTTCTTGAG+TGG 0.641923 3_4:-42843584 Msa0501540:CDS
GATGTGAAAGCTGCATGTTG+TGG 0.645421 3_4:-42841907 Msa0501540:CDS
AAATATTCCAGCACCACCAG+AGG 0.649840 3_4:+42843550 None:intergenic
CAAAGAAGATGGATTCTGAG+AGG 0.677477 3_4:+42842648 None:intergenic
GGATTCAGTCCATCCTACTG+AGG 0.681661 3_4:-42841806 Msa0501540:CDS
GAATTACCAAGAGAAAAGTG+TGG 0.722332 3_4:-42841602 Msa0501540:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAATGAAAAATGTAAA+GGG + chr3_4:42844160-42844179 None:intergenic 10.0%
!! TCATTATTAATATTAACTTC+TGG + chr3_4:42842112-42842131 None:intergenic 15.0%
!!! ATTGATTTAATGCAAAAATT+AGG + chr3_4:42842153-42842172 None:intergenic 15.0%
!! TAATATCTTTGTTAAAAGTT+CGG + chr3_4:42842744-42842763 None:intergenic 15.0%
!! TTTCCAAATAAAATATACAA+TGG - chr3_4:42842771-42842790 Msa0501540:intron 15.0%
!! ATATTTAACTGACAATAAAT+TGG + chr3_4:42843711-42843730 None:intergenic 15.0%
!! CAATAAAATGAAAAATGTAA+AGG + chr3_4:42844161-42844180 None:intergenic 15.0%
!!! TATGAGTTGTTTTTTCAATT+TGG + chr3_4:42842700-42842719 None:intergenic 20.0%
!! ATTGAAAAAACAACTCATAT+CGG - chr3_4:42842701-42842720 Msa0501540:CDS 20.0%
!!! CAACCATTGTATATTTTATT+TGG + chr3_4:42842777-42842796 None:intergenic 20.0%
!! TAACAACTATTACTACATTT+GGG + chr3_4:42843006-42843025 None:intergenic 20.0%
!! ATAACAACTATTACTACATT+TGG + chr3_4:42843007-42843026 None:intergenic 20.0%
!!! TATTTTATGTCCATTTTTTC+AGG - chr3_4:42843896-42843915 Msa0501540:intron 20.0%
!!! TTTCATTTTATTGAGTTTGT+TGG - chr3_4:42844168-42844187 Msa0501540:intron 20.0%
! TCTTTCTTCATCTTAAGTTT+AGG - chr3_4:42841505-42841524 Msa0501540:three_prime_UTR 25.0%
!!! AAAGCTATTTTACCTTACTA+TGG - chr3_4:42841622-42841641 Msa0501540:exon 25.0%
!! ACTGTTTTCATAAACTATCT+TGG - chr3_4:42841835-42841854 Msa0501540:CDS 25.0%
! ATGTTATGTGAGAAAGAAAA+AGG - chr3_4:42842029-42842048 Msa0501540:CDS 25.0%
! AAGAAAAAGGTAGGAAAAAA+AGG - chr3_4:42842042-42842061 Msa0501540:CDS 25.0%
! ATTGTTATAGCTGAAAAAGT+AGG - chr3_4:42842174-42842193 Msa0501540:CDS 25.0%
! AGAACTGAACTTACATAATT+TGG + chr3_4:42842321-42842340 None:intergenic 25.0%
!!! AATGTGACACATAGTTTTTT+TGG + chr3_4:42842569-42842588 None:intergenic 25.0%
! TAAAATGACCCAATTATATC+TGG - chr3_4:42842819-42842838 Msa0501540:intron 25.0%
! AAAATGACCCAATTATATCT+GGG - chr3_4:42842820-42842839 Msa0501540:intron 25.0%
! AAGTCAAAGTGATTAAAGAA+TGG - chr3_4:42843033-42843052 Msa0501540:intron 25.0%
! AATACATTTAACAAAGCAAG+TGG - chr3_4:42843098-42843117 Msa0501540:intron 25.0%
!!! TAAGCATAGTTCTAAATATG+CGG + chr3_4:42843519-42843538 None:intergenic 25.0%
!! TATTTAGAACTATGCTTAGA+AGG - chr3_4:42843521-42843540 Msa0501540:intron 25.0%
!! TATTTGCATCCATTTTCATT+TGG - chr3_4:42843559-42843578 Msa0501540:CDS 25.0%
! TCACAGAGATTATACAAAAA+CGG - chr3_4:42843596-42843615 Msa0501540:CDS 25.0%
! ATCACATACTCATACTTTAT+TGG - chr3_4:42843854-42843873 Msa0501540:intron 25.0%
! ATCTACAAATCCTGAAAAAA+TGG + chr3_4:42843909-42843928 None:intergenic 25.0%
! ATTGTCGATAGACTTTATAA+TGG - chr3_4:42844064-42844083 Msa0501540:intron 25.0%
! GCTTCATATTAAGAAATTGA+TGG + chr3_4:42844344-42844363 None:intergenic 25.0%
GAAGAAAGAGATAAAGAGAA+AGG + chr3_4:42841494-42841513 None:intergenic 30.0%
GGAAACAATGATTACTTGAA+TGG - chr3_4:42841589-42841608 Msa0501540:three_prime_UTR 30.0%
! AGGTAAAATAGCTTTTGCAA+AGG + chr3_4:42841617-42841636 None:intergenic 30.0%
GGAAAATCAATACCATAGTA+AGG + chr3_4:42841637-42841656 None:intergenic 30.0%
GGAAGAAAACTCATGTTTAT+TGG - chr3_4:42841895-42841914 Msa0501540:CDS 30.0%
TATGTGAGAAAGAAAAAGGT+AGG - chr3_4:42842033-42842052 Msa0501540:CDS 30.0%
TACAAACACAAAAGCAAAGT+TGG + chr3_4:42842368-42842387 None:intergenic 30.0%
TTGTGTTTGTACGATAAACA+TGG - chr3_4:42842377-42842396 Msa0501540:intron 30.0%
TGTGTTTGTACGATAAACAT+GGG - chr3_4:42842378-42842397 Msa0501540:intron 30.0%
! TAGACCACAAAATTGCATTT+TGG + chr3_4:42842406-42842425 None:intergenic 30.0%
! TTTTGTGGTCTATTTCAACA+TGG - chr3_4:42842414-42842433 Msa0501540:intron 30.0%
TATTTCAACATGGCCAAAAA+GGG - chr3_4:42842424-42842443 Msa0501540:intron 30.0%
AAAAACTATGTGTCACATTG+TGG - chr3_4:42842570-42842589 Msa0501540:intron 30.0%
TTTGTAGCCCAGATATAATT+GGG + chr3_4:42842830-42842849 None:intergenic 30.0%
! TTTTGTAGCCCAGATATAAT+TGG + chr3_4:42842831-42842850 None:intergenic 30.0%
TTTAACTGGACCAAAATTGA+CGG - chr3_4:42842876-42842895 Msa0501540:intron 30.0%
!! ACTTTCATTTTTGTCTCAAG+TGG + chr3_4:42842943-42842962 None:intergenic 30.0%
TACAAAAAATGTCACCAGTT+GGG + chr3_4:42843069-42843088 None:intergenic 30.0%
CTTTGATTACTTCAATTCGA+AGG - chr3_4:42843230-42843249 Msa0501540:intron 30.0%
ACACAATGGTTGTATATTGT+AGG - chr3_4:42843328-42843347 Msa0501540:intron 30.0%
! GTTGTTCTAAATTGTGTTTG+CGG - chr3_4:42843381-42843400 Msa0501540:intron 30.0%
AATATGCGGACACAATATAA+AGG + chr3_4:42843505-42843524 None:intergenic 30.0%
GTTACCATACCAAATGAAAA+TGG + chr3_4:42843571-42843590 None:intergenic 30.0%
GTATGAGTAACTTAAGTTCT+TGG + chr3_4:42843777-42843796 None:intergenic 30.0%
!! AAAGATATGGTCTTGTCTAT+TGG + chr3_4:42844005-42844024 None:intergenic 30.0%
! ATAGACAAGACCATATCTTT+TGG - chr3_4:42844005-42844024 Msa0501540:intron 30.0%
! TAGACAAGACCATATCTTTT+GGG - chr3_4:42844006-42844025 Msa0501540:intron 30.0%
ATACACATCTCCTGTTAATA+TGG - chr3_4:42844096-42844115 Msa0501540:intron 30.0%
AGGATTCTTAGAAGCTCAAA+AGG - chr3_4:42841525-42841544 Msa0501540:three_prime_UTR 35.0%
!! AAGAATGCTGCTGATTTGAT+TGG - chr3_4:42841691-42841710 Msa0501540:CDS 35.0%
! TTTCTGCAGTGTTTTTCTCA+TGG - chr3_4:42841874-42841893 Msa0501540:CDS 35.0%
TGAAAGAGAGACATCACAAT+TGG - chr3_4:42841935-42841954 Msa0501540:intron 35.0%
AAGAATGTATCCTTCTTGAG+TGG - chr3_4:42842249-42842268 Msa0501540:intron 35.0%
AAAGTTAACACCACTCAAGA+AGG + chr3_4:42842262-42842281 None:intergenic 35.0%
GTGTTTGTACGATAAACATG+GGG - chr3_4:42842379-42842398 Msa0501540:intron 35.0%
CTATTTCAACATGGCCAAAA+AGG - chr3_4:42842423-42842442 Msa0501540:intron 35.0%
AACCACTTGTGTGATATTTG+TGG - chr3_4:42842447-42842466 Msa0501540:intron 35.0%
ACTTGTGTGATATTTGTGGT+GGG - chr3_4:42842451-42842470 Msa0501540:intron 35.0%
!!! TTGGGTCATTTTAACTCTCT+GGG + chr3_4:42842812-42842831 None:intergenic 35.0%
!!! ATTGGGTCATTTTAACTCTC+TGG + chr3_4:42842813-42842832 None:intergenic 35.0%
ATCTGGGCTACAAAACATAT+CGG - chr3_4:42842836-42842855 Msa0501540:intron 35.0%
GTTAAATGAGCTAGTTCGAT+GGG + chr3_4:42842862-42842881 None:intergenic 35.0%
AGTTAAATGAGCTAGTTCGA+TGG + chr3_4:42842863-42842882 None:intergenic 35.0%
ATCGAACTAGCTCATTTAAC+TGG - chr3_4:42842862-42842881 Msa0501540:intron 35.0%
ATGGAAAAATTTCTCCCAAC+TGG - chr3_4:42843052-42843071 Msa0501540:intron 35.0%
CTACAAAAAATGTCACCAGT+TGG + chr3_4:42843070-42843089 None:intergenic 35.0%
GAAGAATCGACAAAGCAAAT+AGG - chr3_4:42843141-42843160 Msa0501540:intron 35.0%
! TCCATCTTCTTTGTTGTGAT+TGG - chr3_4:42843195-42843214 Msa0501540:intron 35.0%
! GTCATTAAAAGTGCAACTAC+AGG - chr3_4:42843302-42843321 Msa0501540:intron 35.0%
!! TTCATTTTTCCGCAATGTCA+AGG + chr3_4:42843431-42843450 None:intergenic 35.0%
TCAACATTGCTGCTCAATTA+CGG + chr3_4:42843465-42843484 None:intergenic 35.0%
! GCATCCATTTTCATTTGGTA+TGG - chr3_4:42843564-42843583 Msa0501540:CDS 35.0%
GATTATACAAAAACGGTGCA+AGG - chr3_4:42843603-42843622 Msa0501540:CDS 35.0%
TTGTTCTTAAGCCTCAATGT+AGG + chr3_4:42843668-42843687 None:intergenic 35.0%
AAACCTTCACTCCATGTTAA+AGG - chr3_4:42843736-42843755 Msa0501540:intron 35.0%
ATTCCTTTAACATGGAGTGA+AGG + chr3_4:42843742-42843761 None:intergenic 35.0%
TTCACTCCATGTTAAAGGAA+TGG - chr3_4:42843741-42843760 Msa0501540:intron 35.0%
CAATTGCCATTCCTTTAACA+TGG + chr3_4:42843750-42843769 None:intergenic 35.0%
CATGTTAAAGGAATGGCAAT+TGG - chr3_4:42843748-42843767 Msa0501540:intron 35.0%
ATTCAGAATCCAACTTCTCA+TGG - chr3_4:42843827-42843846 Msa0501540:intron 35.0%
GTGATAATACCATGAGAAGT+TGG + chr3_4:42843839-42843858 None:intergenic 35.0%
ATGTTTGCACTTGGTAAACA+TGG + chr3_4:42843977-42843996 None:intergenic 35.0%
TTGGTACAAATGTTTGCACT+TGG + chr3_4:42843986-42844005 None:intergenic 35.0%
AGTAGCTCTTCCATATTAAC+AGG + chr3_4:42844109-42844128 None:intergenic 35.0%
GAATTACCAAGAGAAAAGTG+TGG - chr3_4:42844231-42844250 Msa0501540:CDS 35.0%
TTTCCAACTAAGAAACCTGC+TGG - chr3_4:42841652-42841671 Msa0501540:CDS 40.0%
TTCCAACTAAGAAACCTGCT+GGG - chr3_4:42841653-42841672 Msa0501540:CDS 40.0%
GTCTCTCTTTCATGCTTTGT+GGG + chr3_4:42841927-42841946 None:intergenic 40.0%
TGTCTCTCTTTCATGCTTTG+TGG + chr3_4:42841928-42841947 None:intergenic 40.0%
AGATTGTGCAGTGCATTTCA+AGG - chr3_4:42842085-42842104 Msa0501540:CDS 40.0%
! GGTGGTGCTGGAATATTTAA+AGG - chr3_4:42842288-42842307 Msa0501540:intron 40.0%
! GGGTCCAAAATGCAATTTTG+TGG - chr3_4:42842399-42842418 Msa0501540:intron 40.0%
CACCACAAATATCACACAAG+TGG + chr3_4:42842452-42842471 None:intergenic 40.0%
CACTTGTGTGATATTTGTGG+TGG - chr3_4:42842450-42842469 Msa0501540:intron 40.0%
AAAAGCCACATGTCACATTG+CGG + chr3_4:42842499-42842518 None:intergenic 40.0%
ACTATGTGTCACATTGTGGT+TGG - chr3_4:42842574-42842593 Msa0501540:intron 40.0%
AAAATTGACGGCTCTACTTG+CGG - chr3_4:42842888-42842907 Msa0501540:intron 40.0%
TACTTGCGGACAATGAAGTA+GGG - chr3_4:42842902-42842921 Msa0501540:intron 40.0%
! CAAAGAAGATGGATTCTGAG+AGG + chr3_4:42843188-42843207 None:intergenic 40.0%
GCCAATCACAACAAAGAAGA+TGG + chr3_4:42843199-42843218 None:intergenic 40.0%
TGGATTCGACAAACTGTTGT+GGG + chr3_4:42843275-42843294 None:intergenic 40.0%
ATGGATTCGACAAACTGTTG+TGG + chr3_4:42843276-42843295 None:intergenic 40.0%
ACAACAGTTTGTCGAATCCA+TGG - chr3_4:42843275-42843294 Msa0501540:intron 40.0%
! CACTTTTAATGACGAAGCCA+TGG + chr3_4:42843295-42843314 None:intergenic 40.0%
GCAACTACAGGTAAACACAA+TGG - chr3_4:42843314-42843333 Msa0501540:intron 40.0%
CACAACAAACCTTGACATTG+CGG - chr3_4:42843419-42843438 Msa0501540:intron 40.0%
ATTGAGCAGCAATGTTGAAG+CGG - chr3_4:42843467-42843486 Msa0501540:intron 40.0%
ATTCTGAATGAGGTCTTGGA+TGG + chr3_4:42843816-42843835 None:intergenic 40.0%
TTGGATTCTGAATGAGGTCT+TGG + chr3_4:42843820-42843839 None:intergenic 40.0%
GAGAAGTTGGATTCTGAATG+AGG + chr3_4:42843826-42843845 None:intergenic 40.0%
AAAGCTGCATGTTGTGGAAT+TGG - chr3_4:42843932-42843951 Msa0501540:intron 40.0%
GGACTGAATCCCAAAAGATA+TGG + chr3_4:42844018-42844037 None:intergenic 40.0%
ACAGGAGATGTGTATTGTGA+CGG + chr3_4:42844091-42844110 None:intergenic 40.0%
! GTTCCTGCTGTTTACGTGTT+TGG - chr3_4:42841547-42841566 Msa0501540:three_prime_UTR 45.0%
TCACCAAACACGTAAACAGC+AGG + chr3_4:42841553-42841572 None:intergenic 45.0%
! GGTGACTCACTTGTTGATGT+TGG - chr3_4:42841568-42841587 Msa0501540:three_prime_UTR 45.0%
GAAGATGCTAGAGAGAGGTA+TGG + chr3_4:42842216-42842235 None:intergenic 45.0%
CCTTAGAAGATGCTAGAGAG+AGG + chr3_4:42842221-42842240 None:intergenic 45.0%
CCTCTCTCTAGCATCTTCTA+AGG - chr3_4:42842218-42842237 Msa0501540:CDS 45.0%
! AGTGGTGTTAACTTTGCCTC+TGG - chr3_4:42842267-42842286 Msa0501540:intron 45.0%
AAATATTCCAGCACCACCAG+AGG + chr3_4:42842286-42842305 None:intergenic 45.0%
! CACACAAGTGGTTCCCTTTT+TGG + chr3_4:42842440-42842459 None:intergenic 45.0%
CACTTGTGTGACATTGTGGT+GGG + chr3_4:42842618-42842637 None:intergenic 45.0%
GAACCACTTGTGTGACATTG+TGG + chr3_4:42842622-42842641 None:intergenic 45.0%
!!! TCCAATGCCTCACTTTTTGG+CGG + chr3_4:42842645-42842664 None:intergenic 45.0%
!! CAGTCCAATGCCTCACTTTT+TGG + chr3_4:42842648-42842667 None:intergenic 45.0%
CAATTTGGTCCACTGAACTG+CGG + chr3_4:42842685-42842704 None:intergenic 45.0%
! GCAAGTAGAGCCGTCAATTT+TGG + chr3_4:42842889-42842908 None:intergenic 45.0%
CTACTTGCGGACAATGAAGT+AGG - chr3_4:42842901-42842920 Msa0501540:intron 45.0%
GGATTCGACAAACTGTTGTG+GGG + chr3_4:42843274-42843293 None:intergenic 45.0%
TCGGATGTTGTCCTACATTG+AGG - chr3_4:42843654-42843673 Msa0501540:intron 45.0%
GATGTGAAAGCTGCATGTTG+TGG - chr3_4:42843926-42843945 Msa0501540:intron 45.0%
! GTTGTGCCACACTTTTCTCT+TGG + chr3_4:42844240-42844259 None:intergenic 45.0%
CTCCCAGCAGGTTTCTTAGT+TGG + chr3_4:42841658-42841677 None:intergenic 50.0%
CAACTAAGAAACCTGCTGGG+AGG - chr3_4:42841656-42841675 Msa0501540:CDS 50.0%
! GGTATGGTGGTGAAGTTGCA+AGG + chr3_4:42842200-42842219 None:intergenic 50.0%
! GATGCTAGAGAGAGGTATGG+TGG + chr3_4:42842213-42842232 None:intergenic 50.0%
GGTGTTAACTTTGCCTCTGG+TGG - chr3_4:42842270-42842289 Msa0501540:intron 50.0%
CCACATGTCACATTGCGGTT+GGG + chr3_4:42842494-42842513 None:intergenic 50.0%
CCACTTGTGTGACATTGTGG+TGG + chr3_4:42842619-42842638 None:intergenic 50.0%
CCACCACAATGTCACACAAG+TGG - chr3_4:42842616-42842635 Msa0501540:intron 50.0%
!!! CCAATGCCTCACTTTTTGGC+GGG + chr3_4:42842644-42842663 None:intergenic 50.0%
GTTCGGACATGACTCAGTCT+AGG + chr3_4:42842727-42842746 None:intergenic 50.0%
GCAAGGAGATTCGAGATTGC+TGG - chr3_4:42843620-42843639 Msa0501540:CDS 50.0%
GGATTCAGTCCATCCTACTG+AGG - chr3_4:42844027-42844046 Msa0501540:intron 50.0%
GAGTTACTGCCTCAGTAGGA+TGG + chr3_4:42844039-42844058 None:intergenic 50.0%
ATGCGAGTTACTGCCTCAGT+AGG + chr3_4:42844043-42844062 None:intergenic 50.0%
CCATTGCAAAACCTCCCAGC+AGG + chr3_4:42841670-42841689 None:intergenic 55.0%
! CCTGCTGGGAGGTTTTGCAA+TGG - chr3_4:42841667-42841686 Msa0501540:CDS 55.0%
! AACTTTGCCTCTGGTGGTGC+TGG - chr3_4:42842276-42842295 Msa0501540:intron 55.0%
CCCAACCGCAATGTGACATG+TGG - chr3_4:42842491-42842510 Msa0501540:intron 55.0%
GCCACATGTCACATTGCGGT+TGG + chr3_4:42842495-42842514 None:intergenic 55.0%
GTGGTTCCCGCCAAAAAGTG+AGG - chr3_4:42842635-42842654 Msa0501540:intron 55.0%
CCCGCCAAAAAGTGAGGCAT+TGG - chr3_4:42842641-42842660 Msa0501540:intron 55.0%
TTTGGTCCACTGAACTGCGG+CGG + chr3_4:42842682-42842701 None:intergenic 55.0%
GAGATTCGAGATTGCTGGCG+TGG - chr3_4:42843625-42843644 Msa0501540:CDS 55.0%
ATTGCTGGCGTGGCTGCAAT+CGG - chr3_4:42843635-42843654 Msa0501540:CDS 55.0%
TTGGTCCACTGAACTGCGGC+GGG + chr3_4:42842681-42842700 None:intergenic 60.0%
CCACTGAACTGCGGCGGGTC+AGG + chr3_4:42842676-42842695 None:intergenic 70.0%
CCTGACCCGCCGCAGTTCAG+TGG - chr3_4:42842673-42842692 Msa0501540:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 42841472 42844383 42841472 ID=Msa0501540;Name=Msa0501540
chr3_4 mRNA 42841472 42844383 42841472 ID=Msa0501540-mRNA-1;Parent=Msa0501540;Name=Msa0501540-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|0.5|0.6|1|0.75|0.8|5|164|327
chr3_4 exon 42841472 42841937 42841472 ID=Msa0501540-mRNA-1:exon:9076;Parent=Msa0501540-mRNA-1
chr3_4 exon 42842007 42842253 42842007 ID=Msa0501540-mRNA-1:exon:9075;Parent=Msa0501540-mRNA-1
chr3_4 exon 42842646 42842765 42842646 ID=Msa0501540-mRNA-1:exon:9074;Parent=Msa0501540-mRNA-1
chr3_4 exon 42843529 42843671 42843529 ID=Msa0501540-mRNA-1:exon:9073;Parent=Msa0501540-mRNA-1
chr3_4 exon 42844212 42844383 42844212 ID=Msa0501540-mRNA-1:exon:9072;Parent=Msa0501540-mRNA-1
chr3_4 CDS 42844212 42844383 42844212 ID=Msa0501540-mRNA-1:cds;Parent=Msa0501540-mRNA-1
chr3_4 CDS 42843529 42843671 42843529 ID=Msa0501540-mRNA-1:cds;Parent=Msa0501540-mRNA-1
chr3_4 CDS 42842646 42842765 42842646 ID=Msa0501540-mRNA-1:cds;Parent=Msa0501540-mRNA-1
chr3_4 CDS 42842007 42842253 42842007 ID=Msa0501540-mRNA-1:cds;Parent=Msa0501540-mRNA-1
chr3_4 CDS 42841636 42841937 42841636 ID=Msa0501540-mRNA-1:cds;Parent=Msa0501540-mRNA-1
chr3_4 three_prime_UTR 42841472 42841635 42841472 ID=Msa0501540-mRNA-1:three_prime_utr;Parent=Msa0501540-mRNA-1
Gene Sequence

>Msa0501540

ATGATGAGATTGAGAACTTCCTTTCTCTTTATCTCTTTCTTCATCTTAAGTTTAGGATTCTTAGAAGCTCAAAAGGTTCCTGCTGTTTACGTGTTTGGTGACTCACTTGTTGATGTTGGAAACAATGATTACTTGAATGGTACCTTTGCAAAAGCTATTTTACCTTACTATGCTGAAAAAGTAGGCCTTGCAACTTCACCACCATACCTCTCTCTAGCATCTTCTAAGGTAAAAAACAAGAATGTATCCTTCTTGAGTGGTGTTAACTTTGCCTCTGGTGGTGCTGGAATATTTAAAGGCACAGATCCAAATTATATACGATCAATACATTTAACAAAGCAAGTGGACTACTATTCACAAATGTATGAAGAATCGACAAAGCAAATAGGAGTATCAACACTTCAGAAACACCTCTCAGAATCCATCTTCTTTGTTAGATTATACAAAAACGGTGCAAGGAGATTCGAGATTGCTGGCGTGGCTGCAATCGGATGTTGTCCTACATTGAGGCTTAAGAACAAAACAGAATGCTTCTCAGAAGCCAATTTATTGTCAGTTAAATATAATGAAAACCTTCACTCCATGTTAAAGGAATGGCAATTGGAGACCAAGAACTTAAGTTACTCATACTTTGATACTTATGCTGCCATCCAAGACCTCATTCAGAATCCAACTTCTCATGGATTTGTAGATGTGAAAGCTGCATGTTGTGGAATTGGTGAACTGAATGCTGAACTTCCATGTTTACCAAGTGCAAACATTTGTACCAATAGACAAGACCATATCTTTTGGGATTCAGTCCATCCTACTGAGGCAGTAACTCGCATAATTGTCGATAGACTTTATAATGGACCGTCACAATACACATCTCCTGTTAATATGGAAGAGCTACTTCATGTATCGATTGCTAAATCATTTTGTCCCTTTACATTTTTCATTTTATTGAGTTTGTTGGTTACTTGTTATCAAACACAAACAAATTAG
Protein sequence

>Msa0501540

MMRLRTSFLFISFFILSLGFLEAQKVPAVYVFGDSLVDVGNNDYLNGTFAKAILPYYAEKVGLATSPPYLSLASSKVKNKNVSFLSGVNFASGGAGIFKGTDPNYIRSIHLTKQVDYYSQMYEESTKQIGVSTLQKHLSESIFFVRLYKNGARRFEIAGVAAIGCCPTLRLKNKTECFSEANLLSVKYNENLHSMLKEWQLETKNLSYSYFDTYAAIQDLIQNPTSHGFVDVKAACCGIGELNAELPCLPSANICTNRQDHIFWDSVHPTEAVTRIIVDRLYNGPSQYTSPVNMEELLHVSIAKSFCPFTFFILLSLLVTCYQTQTN*