AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0408490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0408490 MtrunA17_Chr3g0099231 96.134 388 15 0 1 388 1 388 0.0 775
Msa0408490 MtrunA17_Chr3g0099161 73.961 361 92 2 1 359 64 424 0.0 555
Msa0408490 MtrunA17_Chr3g0099151 70.879 364 103 3 1 361 59 422 0.0 545
Msa0408490 MtrunA17_Chr5g0444401 65.812 351 118 2 10 359 11 360 1.19e-173 488
Msa0408490 MtrunA17_Chr4g0068441 33.243 367 225 7 2 360 13 367 1.12e-70 226
Msa0408490 MtrunA17_Chr8g0370951 34.270 356 220 6 16 362 19 369 3.50e-70 224
Msa0408490 MtrunA17_Chr2g0294301 35.230 369 218 7 4 359 6 366 5.23e-70 224
Msa0408490 MtrunA17_Chr3g0077571 33.242 364 231 5 1 361 3 357 1.50e-69 223
Msa0408490 MtrunA17_Chr8g0374101 35.135 370 216 10 7 358 10 373 5.06e-69 222
Msa0408490 MtrunA17_Chr1g0189901 35.754 358 214 7 9 359 13 361 5.32e-69 221
Msa0408490 MtrunA17_Chr5g0434621 33.735 332 211 5 15 343 12 337 3.26e-68 219
Msa0408490 MtrunA17_Chr4g0017431 33.141 347 219 6 21 361 24 363 1.04e-67 218
Msa0408490 MtrunA17_Chr7g0275021 33.241 361 225 6 9 359 10 364 3.97e-66 214
Msa0408490 MtrunA17_Chr1g0189931 34.254 362 221 6 6 359 10 362 4.08e-65 211
Msa0408490 MtrunA17_Chr8g0370981 32.500 400 217 7 9 359 22 417 1.34e-64 211
Msa0408490 MtrunA17_Chr7g0274991 34.513 339 207 6 28 359 33 363 6.32e-64 208
Msa0408490 MtrunA17_Chr2g0294311 33.429 350 209 7 27 360 31 372 1.23e-63 208
Msa0408490 MtrunA17_Chr1g0182811 35.103 339 207 7 28 359 33 365 3.14e-63 207
Msa0408490 MtrunA17_Chr7g0275011 33.824 340 212 5 28 361 34 366 1.49e-62 205
Msa0408490 MtrunA17_Chr7g0275001 34.118 340 208 5 28 359 25 356 3.67e-62 204
Msa0408490 MtrunA17_Chr2g0320671 34.571 350 213 9 2 342 1 343 1.01e-61 202
Msa0408490 MtrunA17_Chr2g0285061 34.316 373 225 10 1 361 1 365 1.22e-61 202
Msa0408490 MtrunA17_Chr3g0092131 31.361 338 224 4 9 342 3 336 2.04e-61 202
Msa0408490 MtrunA17_Chr3g0086641 34.884 344 209 8 25 361 35 370 6.67e-61 201
Msa0408490 MtrunA17_Chr4g0060811 31.761 318 206 4 30 342 29 340 1.96e-60 199
Msa0408490 MtrunA17_Chr7g0215961 32.958 355 209 8 14 359 16 350 5.80e-60 197
Msa0408490 MtrunA17_Chr4g0008851 33.607 366 227 8 2 359 7 364 7.89e-60 198
Msa0408490 MtrunA17_Chr8g0380041 32.329 365 222 9 9 361 12 363 2.70e-59 196
Msa0408490 MtrunA17_Chr6g0457921 32.687 361 225 9 10 359 7 360 3.25e-59 196
Msa0408490 MtrunA17_Chr3g0131321 32.240 366 231 7 4 358 7 366 6.82e-59 196
Msa0408490 MtrunA17_Chr1g0189891 34.540 359 217 9 7 359 8 354 1.49e-58 194
Msa0408490 MtrunA17_Chr2g0301641 32.565 347 213 6 28 363 43 379 4.22e-57 191
Msa0408490 MtrunA17_Chr8g0341001 32.578 353 220 10 1 342 1 346 1.19e-54 184
Msa0408490 MtrunA17_Chr2g0283191 34.195 348 205 10 4 332 8 350 3.22e-54 183
Msa0408490 MtrunA17_Chr8g0371491 34.639 332 198 9 16 338 24 345 3.92e-54 182
Msa0408490 MtrunA17_Chr1g0156921 34.925 335 198 9 26 350 40 364 4.06e-54 182
Msa0408490 MtrunA17_Chr5g0396511 30.655 336 221 5 30 359 48 377 1.04e-53 182
Msa0408490 MtrunA17_Chr2g0330781 34.328 335 203 9 18 342 18 345 6.19e-53 179
Msa0408490 MtrunA17_Chr4g0046151 32.418 364 213 10 8 345 10 366 1.00e-52 179
Msa0408490 MtrunA17_Chr5g0420811 32.682 358 201 12 4 343 1 336 1.65e-52 178
Msa0408490 MtrunA17_Chr1g0156931 33.148 359 216 7 1 342 1 352 9.53e-52 176
Msa0408490 MtrunA17_Chr3g0077581 32.670 352 208 11 22 358 30 367 1.20e-51 176
Msa0408490 MtrunA17_Chr5g0405821 31.818 330 208 7 24 344 39 360 3.38e-48 167
Msa0408490 MtrunA17_Chr5g0432101 31.677 322 205 7 25 338 30 344 4.21e-48 167
Msa0408490 MtrunA17_Chr3g0105401 29.714 350 230 8 1 342 1 342 6.62e-48 166
Msa0408490 MtrunA17_Chr3g0085881 32.749 342 207 10 23 359 28 351 7.17e-48 166
Msa0408490 MtrunA17_Chr2g0285001 30.079 379 233 12 1 363 1 363 8.44e-48 166
Msa0408490 MtrunA17_Chr4g0027521 31.804 327 205 9 26 342 25 343 9.60e-48 166
Msa0408490 MtrunA17_Chr5g0405831 31.988 322 205 9 24 338 39 353 1.70e-47 165
Msa0408490 MtrunA17_Chr5g0438641 30.960 323 210 7 23 339 27 342 2.20e-47 165
Msa0408490 MtrunA17_Chr5g0438621 30.960 323 210 7 26 342 28 343 2.96e-47 164
Msa0408490 MtrunA17_Chr8g0380031 29.412 374 223 13 2 359 56 404 3.71e-47 166
Msa0408490 MtrunA17_Chr5g0438631 31.692 325 206 8 26 342 26 342 4.62e-46 161
Msa0408490 MtrunA17_Chr1g0156911 33.123 317 202 5 27 339 36 346 6.31e-46 161
Msa0408490 MtrunA17_Chr8g0349341 31.398 379 224 11 1 359 1 363 7.33e-46 161
Msa0408490 MtrunA17_Chr2g0284951 30.997 371 222 14 7 363 7 357 1.77e-45 160
Msa0408490 MtrunA17_Chr3g0085231 29.810 369 224 11 8 361 2 350 4.01e-45 159
Msa0408490 MtrunA17_Chr8g0344931 30.058 346 217 9 24 361 33 361 6.03e-45 159
Msa0408490 MtrunA17_Chr2g0284991 30.362 359 226 11 25 374 30 373 6.40e-45 159
Msa0408490 MtrunA17_Chr1g0156891 34.203 345 205 8 10 339 16 353 6.61e-45 159
Msa0408490 MtrunA17_Chr3g0142941 31.889 323 200 8 26 339 45 356 8.02e-45 158
Msa0408490 MtrunA17_Chr3g0120861 27.829 327 225 6 21 342 31 351 1.14e-44 158
Msa0408490 MtrunA17_Chr8g0370961 31.004 229 155 2 132 358 15 242 1.88e-43 151
Msa0408490 MtrunA17_Chr3g0142921 31.638 354 214 7 9 342 4 349 3.97e-43 154
Msa0408490 MtrunA17_Chr8g0344941 28.963 328 211 8 28 344 41 357 7.39e-43 153
Msa0408490 MtrunA17_Chr1g0156901 31.609 348 214 9 4 339 24 359 9.46e-43 153
Msa0408490 MtrunA17_Chr8g0349321 30.000 380 230 11 1 360 1 364 1.95e-42 152
Msa0408490 MtrunA17_Chr2g0284941 32.092 349 190 14 25 363 30 341 2.45e-42 151
Msa0408490 MtrunA17_Chr2g0284921 28.889 360 230 11 12 361 18 361 2.36e-41 149
Msa0408490 MtrunA17_Chr8g0371481 30.606 330 205 9 27 344 40 357 8.57e-40 145
Msa0408490 MtrunA17_Chr8g0371471 29.508 366 222 11 1 342 1 354 6.32e-39 142
Msa0408490 MtrunA17_Chr8g0349331 28.084 381 204 11 1 360 1 332 6.96e-38 139
Msa0408490 MtrunA17_Chr5g0437421 28.829 333 207 9 25 340 29 348 7.16e-38 140
Msa0408490 MtrunA17_Chr1g0157001 30.844 308 194 8 33 332 41 337 5.97e-34 129
Msa0408490 MtrunA17_Chr8g0349301 29.965 287 180 7 28 309 37 307 1.22e-33 127
Msa0408490 MtrunA17_Chr6g0455661 31.799 239 154 7 130 361 236 472 1.89e-32 127
Msa0408490 MtrunA17_Chr6g0455661 43.284 134 63 5 2 133 3 125 3.82e-21 94.7
Msa0408490 MtrunA17_Chr6g0459921 31.061 264 167 8 105 361 106 361 1.95e-32 125
Msa0408490 MtrunA17_Chr7g0226911 27.621 391 216 13 2 345 1 371 1.18e-31 123
Msa0408490 MtrunA17_Chr7g0226941 29.526 359 204 15 27 354 32 372 2.12e-30 120
Msa0408490 MtrunA17_Chr1g0160011 29.191 346 203 11 27 345 39 369 2.48e-30 120
Msa0408490 MtrunA17_Chr7g0226931 26.263 396 224 14 1 345 7 385 5.02e-30 119
Msa0408490 MtrunA17_Chr1g0160031 30.259 347 198 14 27 345 38 368 9.67e-28 112
Msa0408490 MtrunA17_Chr7g0275291 25.937 347 223 10 28 352 33 367 1.77e-27 112
Msa0408490 MtrunA17_Chr3g0104821 29.155 343 207 11 28 346 44 374 2.11e-27 112
Msa0408490 MtrunA17_Chr7g0271551 26.197 355 208 15 23 352 31 356 1.26e-26 109
Msa0408490 MtrunA17_Chr1g0159991 27.606 355 211 11 27 352 35 372 3.13e-26 108
Msa0408490 MtrunA17_Chr6g0450731 28.107 338 203 11 27 345 32 348 4.25e-26 107
Msa0408490 MtrunA17_Chr1g0178931 26.543 324 205 13 29 342 38 338 8.98e-26 106
Msa0408490 MtrunA17_Chr4g0057991 27.666 347 209 14 29 352 40 367 9.53e-26 107
Msa0408490 MtrunA17_Chr4g0027571 28.436 211 146 3 137 342 3 213 1.52e-25 103
Msa0408490 MtrunA17_Chr2g0283481 27.859 341 213 13 28 346 47 376 2.43e-25 106
Msa0408490 MtrunA17_Chr1g0198351 26.554 354 192 16 10 332 17 333 8.34e-25 103
Msa0408490 MtrunA17_Chr2g0283511 30.117 342 206 17 33 352 36 366 2.00e-24 103
Msa0408490 MtrunA17_Chr7g0229591 39.655 174 96 5 26 197 28 194 3.56e-24 99.4
Msa0408490 MtrunA17_Chr1g0178941 25.758 330 208 14 29 342 41 349 3.83e-24 102
Msa0408490 MtrunA17_Chr3g0093031 27.794 349 211 13 28 351 30 362 6.29e-24 101
Msa0408490 MtrunA17_Chr1g0159981 27.500 360 205 16 27 352 45 382 6.44e-24 102
Msa0408490 MtrunA17_Chr3g0112821 28.779 344 209 13 28 351 30 357 6.58e-24 101
Msa0408490 MtrunA17_Chr6g0450721 26.686 341 202 13 27 345 32 346 1.07e-23 100
Msa0408490 MtrunA17_Chr8g0370971 47.899 119 53 4 13 124 17 133 1.23e-23 96.3
Msa0408490 MtrunA17_Chr6g0450701 26.702 382 234 14 1 355 12 374 1.33e-23 100
Msa0408490 MtrunA17_Chr7g0254461 26.197 355 212 13 25 345 40 378 1.38e-23 101
Msa0408490 MtrunA17_Chr1g0160101 25.989 354 207 15 27 345 41 374 1.46e-23 101
Msa0408490 MtrunA17_Chr6g0450711 27.920 351 198 14 27 345 121 448 3.59e-23 100
Msa0408490 MtrunA17_Chr7g0266061 24.695 328 213 13 26 342 40 344 4.41e-23 99.4
Msa0408490 MtrunA17_Chr5g0440501 27.016 248 157 6 136 359 2 249 5.82e-23 97.1
Msa0408490 MtrunA17_Chr2g0301581 27.424 361 213 13 9 346 13 347 9.48e-23 98.2
Msa0408490 MtrunA17_Chr1g0189921 45.082 122 57 3 5 124 8 121 1.50e-22 92.8
Msa0408490 MtrunA17_Chr1g0189911 32.867 143 93 1 220 359 2 144 2.49e-22 92.4
Msa0408490 MtrunA17_Chr8g0352901 28.133 391 221 15 2 355 1 368 3.87e-22 96.7
Msa0408490 MtrunA17_Chr8g0347751 25.496 353 209 12 28 345 36 369 4.57e-22 96.7
Msa0408490 MtrunA17_Chr1g0159971 25.543 368 227 14 28 365 47 397 1.39e-21 95.5
Msa0408490 MtrunA17_Chr2g0301541 27.147 361 214 13 9 346 13 347 2.48e-21 94.4
Msa0408490 MtrunA17_Chr1g0191461 26.012 346 210 13 27 342 30 359 3.44e-21 94.0
Msa0408490 MtrunA17_Chr2g0321991 49.000 100 46 3 22 121 27 121 4.07e-21 88.2
Msa0408490 MtrunA17_Chr8g0381581 26.966 356 203 14 27 345 39 374 1.60e-20 92.4
Msa0408490 MtrunA17_Chr1g0198381 25.758 330 200 13 29 342 3 303 5.04e-20 89.7
Msa0408490 MtrunA17_Chr2g0317271 27.697 343 197 12 28 346 30 345 7.39e-20 90.1
Msa0408490 MtrunA17_Chr2g0317261 27.697 343 197 12 28 346 30 345 1.63e-19 89.0
Msa0408490 MtrunA17_Chr0c01g0489581 27.811 338 203 11 28 346 30 345 3.99e-19 87.8
Msa0408490 MtrunA17_Chr0c01g0489571 27.811 338 203 11 28 346 30 345 7.69e-19 87.0
Msa0408490 MtrunA17_Chr7g0273101 24.157 356 223 12 27 352 28 366 1.34e-18 86.7
Msa0408490 MtrunA17_Chr2g0283531 26.720 378 226 17 2 346 1 360 1.47e-18 86.3
Msa0408490 MtrunA17_Chr7g0229581 29.861 144 97 2 203 342 3 146 2.28e-18 81.6
Msa0408490 MtrunA17_Chr3g0112691 26.571 350 212 13 28 351 30 360 7.66e-18 84.3
Msa0408490 MtrunA17_Chr4g0027561 45.283 106 51 3 26 130 28 127 1.26e-17 79.0
Msa0408490 MtrunA17_Chr6g0469511 42.623 122 62 4 26 146 28 142 4.03e-17 77.8
Msa0408490 MtrunA17_Chr3g0096551 27.083 384 214 16 9 345 3 367 4.04e-17 82.4
Msa0408490 MtrunA17_Chr4g0018571 30.282 142 95 2 205 342 28 169 6.68e-17 78.2
Msa0408490 MtrunA17_Chr8g0339251 28.754 313 186 12 2 299 1 291 8.28e-17 80.9
Msa0408490 MtrunA17_Chr7g0228261 37.500 80 50 0 280 359 11 90 9.24e-17 75.1
Msa0408490 MtrunA17_Chr3g0104831 27.509 269 166 9 102 346 30 293 9.44e-16 77.4
Msa0408490 MtrunA17_Chr1g0198391 24.302 358 193 13 17 332 22 343 2.87e-15 76.6
Msa0408490 MtrunA17_Chr2g0301591 24.516 310 165 11 9 288 13 283 1.04e-11 65.1
Msa0408490 MtrunA17_Chr1g0198401 25.806 279 154 13 75 332 6 252 4.23e-11 63.2
Msa0408490 MtrunA17_Chr4g0018561 50.943 53 25 1 26 78 28 79 4.68e-11 59.3
Msa0408490 MtrunA17_Chr2g0308201 46.250 80 35 3 9 82 10 87 8.75e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0408490 AT5G55050.1 51.327 339 159 5 26 359 37 374 7.50e-113 335
Msa0408490 AT5G37690.1 37.421 318 190 5 29 343 28 339 3.89e-75 237
Msa0408490 AT3G50400.1 37.088 364 210 10 8 358 14 371 1.09e-71 229
Msa0408490 AT5G37690.2 36.164 318 186 5 29 343 28 331 4.22e-70 224
Msa0408490 AT3G04290.1 34.699 366 223 8 7 365 9 365 8.84e-66 213
Msa0408490 AT5G08460.1 32.964 361 224 7 10 358 28 382 1.59e-63 208
Msa0408490 AT5G18430.1 33.423 371 227 7 2 361 1 362 1.85e-63 207
Msa0408490 AT4G10950.2 32.845 341 217 5 26 360 69 403 1.85e-63 209
Msa0408490 AT1G29660.1 34.072 361 219 10 11 361 13 364 2.34e-63 207
Msa0408490 AT4G28780.1 33.333 339 215 5 28 361 31 363 4.47e-63 206
Msa0408490 AT1G71691.2 33.234 337 212 6 26 358 53 380 4.59e-63 207
Msa0408490 AT5G33370.1 35.000 340 208 5 28 361 30 362 3.45e-62 204
Msa0408490 AT2G23540.1 33.071 381 224 11 3 358 10 384 8.51e-61 201
Msa0408490 AT1G71250.1 33.721 344 213 6 25 360 38 374 3.09e-60 199
Msa0408490 AT4G10950.1 32.551 341 214 6 26 360 69 399 7.87e-60 199
Msa0408490 AT1G74460.1 31.657 338 220 5 9 342 6 336 4.17e-59 196
Msa0408490 AT1G75890.2 36.474 329 191 8 24 343 43 362 1.21e-58 195
Msa0408490 AT1G75890.3 36.474 329 191 8 24 343 72 391 1.88e-58 195
Msa0408490 AT1G29670.1 33.609 363 220 10 11 361 10 363 1.29e-57 192
Msa0408490 AT3G53100.1 34.384 349 215 9 1 342 1 342 1.31e-57 192
Msa0408490 AT1G75890.1 35.484 341 191 9 24 343 43 375 3.45e-57 191
Msa0408490 AT1G29670.2 33.609 363 220 10 11 361 78 431 8.07e-57 192
Msa0408490 AT5G22810.1 35.736 333 195 11 21 342 26 350 1.22e-56 189
Msa0408490 AT5G15720.1 33.333 345 207 8 26 358 28 361 1.12e-55 187
Msa0408490 AT5G45960.1 34.161 322 189 9 24 332 43 354 1.17e-55 187
Msa0408490 AT1G20120.1 33.846 325 196 8 27 342 77 391 1.61e-55 188
Msa0408490 AT1G33811.1 33.067 375 217 13 9 361 8 370 2.02e-55 187
Msa0408490 AT1G75880.1 35.185 324 200 5 26 344 50 368 1.74e-53 182
Msa0408490 AT5G45670.1 31.534 352 223 9 1 343 1 343 9.80e-53 179
Msa0408490 AT3G16370.1 34.627 335 203 10 15 342 19 344 5.78e-52 177
Msa0408490 AT1G75880.2 35.185 324 199 6 26 344 50 367 6.35e-52 177
Msa0408490 AT2G04570.1 32.194 351 223 8 1 344 1 343 5.60e-51 174
Msa0408490 AT1G53920.1 32.530 332 199 8 26 345 46 364 6.13e-51 175
Msa0408490 AT4G18970.1 30.548 347 219 9 26 361 26 361 1.08e-50 174
Msa0408490 AT5G03820.1 32.267 344 217 8 7 342 13 348 1.24e-50 174
Msa0408490 AT2G42990.1 31.003 329 214 7 21 343 21 342 1.47e-50 173
Msa0408490 AT5G03820.2 32.267 344 217 8 7 342 41 376 3.13e-50 173
Msa0408490 AT4G18970.2 31.105 344 221 9 26 361 26 361 4.25e-50 174
Msa0408490 AT1G71120.1 30.946 349 209 9 23 358 26 355 1.78e-49 171
Msa0408490 AT5G41890.1 32.065 368 219 11 12 358 15 372 2.14e-49 171
Msa0408490 AT1G75900.1 30.636 346 222 8 7 344 22 357 6.69e-49 169
Msa0408490 AT1G20130.1 32.578 353 206 8 22 361 198 531 1.35e-48 172
Msa0408490 AT5G42170.1 32.609 322 203 7 26 342 48 360 1.48e-48 169
Msa0408490 AT5G45950.1 31.776 321 206 8 24 341 36 346 1.82e-48 168
Msa0408490 AT1G20130.2 32.578 353 206 8 22 361 178 511 2.04e-48 172
Msa0408490 AT2G40250.1 32.308 325 199 7 26 338 34 349 1.51e-47 166
Msa0408490 AT1G20132.1 31.692 325 211 7 24 343 57 375 3.50e-47 165
Msa0408490 AT5G03810.1 31.173 324 209 7 26 342 28 344 4.64e-47 164
Msa0408490 AT1G53990.1 29.319 382 235 10 1 363 1 366 9.71e-47 164
Msa0408490 AT2G30310.1 31.210 314 203 6 27 333 33 340 6.51e-46 161
Msa0408490 AT3G14820.1 30.791 354 219 12 2 342 1 341 7.16e-46 161
Msa0408490 AT1G75920.2 32.945 343 197 11 12 342 13 334 8.83e-46 160
Msa0408490 AT1G06990.1 28.916 332 222 6 14 338 23 347 1.67e-45 160
Msa0408490 AT1G20135.1 30.625 320 193 9 28 339 29 327 3.79e-45 159
Msa0408490 AT1G71691.1 28.169 284 193 4 79 358 3 279 5.52e-45 157
Msa0408490 AT1G58430.1 30.650 323 211 7 27 342 34 350 1.33e-44 158
Msa0408490 AT3G14225.1 28.161 348 229 8 28 361 37 377 2.66e-44 157
Msa0408490 AT3G14225.2 28.613 346 226 8 28 361 37 373 3.40e-44 157
Msa0408490 AT1G75910.1 32.416 327 191 10 27 342 27 334 3.62e-44 156
Msa0408490 AT4G26790.1 30.581 327 208 9 25 342 26 342 5.43e-44 156
Msa0408490 AT4G26790.2 30.581 327 208 9 25 342 26 342 5.43e-44 156
Msa0408490 AT5G40990.1 28.818 347 226 7 28 362 37 374 2.92e-43 155
Msa0408490 AT2G19010.1 28.099 363 228 12 5 358 7 345 7.76e-43 153
Msa0408490 AT2G31540.1 31.045 335 209 9 27 348 34 359 7.83e-43 153
Msa0408490 AT2G19010.2 29.275 345 211 12 23 358 55 375 1.04e-42 153
Msa0408490 AT2G24560.1 31.132 318 200 9 27 334 33 341 1.27e-42 153
Msa0408490 AT1G53940.2 28.818 347 226 7 28 362 39 376 1.28e-42 153
Msa0408490 AT2G03980.2 34.385 317 183 10 27 332 42 344 4.40e-42 151
Msa0408490 AT2G03980.3 34.385 317 183 10 27 332 42 344 4.40e-42 151
Msa0408490 AT2G03980.1 34.385 317 183 10 27 332 42 344 4.40e-42 151
Msa0408490 AT2G03980.4 34.385 317 183 10 27 332 42 344 4.40e-42 151
Msa0408490 AT1G75920.1 31.564 358 197 12 12 342 8 344 7.07e-42 150
Msa0408490 AT1G71691.3 33.209 268 166 6 26 289 53 311 1.00e-41 149
Msa0408490 AT2G30220.1 29.907 321 204 7 27 336 32 342 1.54e-41 150
Msa0408490 AT5G63170.1 31.268 355 177 15 4 332 6 319 4.65e-41 148
Msa0408490 AT2G19060.1 29.310 348 207 13 21 355 23 344 7.40e-41 148
Msa0408490 AT4G30140.1 30.058 346 211 13 22 360 27 348 2.92e-40 146
Msa0408490 AT1G59406.1 31.322 348 215 9 11 344 5 342 1.37e-39 144
Msa0408490 AT1G59030.1 31.322 348 215 9 11 344 5 342 1.37e-39 144
Msa0408490 AT1G58725.1 31.322 348 215 9 11 344 5 342 1.37e-39 144
Msa0408490 AT2G19050.1 29.107 347 215 11 23 361 26 349 3.79e-39 143
Msa0408490 AT1G75930.1 29.464 336 210 10 12 338 13 330 8.05e-39 142
Msa0408490 AT4G16230.1 37.662 231 128 8 21 243 23 245 1.30e-38 139
Msa0408490 AT5G33370.2 33.209 268 166 5 28 289 30 290 1.94e-37 138
Msa0408490 AT5G15720.3 29.210 291 186 6 80 358 48 330 2.27e-37 138
Msa0408490 AT1G58520.3 31.790 324 196 11 26 342 28 333 2.33e-37 138
Msa0408490 AT1G58525.1 31.790 324 196 11 26 342 28 333 2.33e-37 138
Msa0408490 AT1G73610.1 30.460 348 194 12 3 332 8 325 2.84e-37 138
Msa0408490 AT3G43570.1 29.023 348 207 9 2 344 1 313 8.86e-37 136
Msa0408490 AT1G75920.4 31.879 298 171 10 57 342 29 306 6.62e-36 134
Msa0408490 AT1G54030.1 25.826 333 221 7 29 359 53 361 9.07e-36 135
Msa0408490 AT1G75920.3 29.118 340 183 9 12 342 13 303 1.39e-35 132
Msa0408490 AT5G15720.2 32.364 275 163 8 27 289 29 292 6.39e-34 128
Msa0408490 AT3G14220.1 26.796 362 231 12 9 359 13 351 1.88e-32 125
Msa0408490 AT1G23500.1 28.531 354 220 10 1 345 10 339 1.24e-30 120
Msa0408490 AT1G54000.1 26.453 344 219 9 26 358 34 354 1.33e-30 121
Msa0408490 AT1G54010.1 26.446 363 234 10 8 359 15 355 1.43e-30 120
Msa0408490 AT3G48460.1 28.446 341 216 13 29 352 39 368 1.72e-30 120
Msa0408490 AT2G04020.1 36.842 209 120 6 27 233 42 240 1.46e-29 115
Msa0408490 AT2G04020.2 36.842 209 120 6 27 233 42 240 2.43e-29 116
Msa0408490 AT2G19050.2 30.000 260 163 7 23 277 26 271 4.61e-29 114
Msa0408490 AT1G54020.2 25.862 348 225 10 21 359 24 347 7.30e-29 115
Msa0408490 AT2G24560.2 30.072 276 174 9 27 292 33 299 1.44e-28 114
Msa0408490 AT1G54790.3 26.471 374 229 13 8 352 13 369 1.95e-28 115
Msa0408490 AT1G53940.1 28.731 268 176 6 28 289 39 297 9.89e-28 111
Msa0408490 AT1G28610.2 28.933 356 212 14 22 352 25 364 1.10e-27 112
Msa0408490 AT3G27950.1 26.703 367 220 12 11 345 8 357 1.89e-27 112
Msa0408490 AT5G14450.1 26.857 350 209 12 27 345 40 373 2.62e-27 112
Msa0408490 AT1G56670.1 27.182 401 216 15 7 373 12 370 4.11e-27 111
Msa0408490 AT2G27360.1 27.250 400 242 17 9 377 12 393 5.75e-27 111
Msa0408490 AT1G28670.1 26.893 383 234 17 1 353 5 371 5.18e-26 108
Msa0408490 AT1G54790.1 26.064 376 231 13 8 352 9 368 6.58e-26 107
Msa0408490 AT3G05180.1 25.556 360 223 10 16 345 24 368 7.86e-26 107
Msa0408490 AT3G43550.1 29.478 268 176 6 26 289 28 286 1.23e-25 105
Msa0408490 AT1G28650.1 27.297 381 232 16 1 352 7 371 1.43e-25 107
Msa0408490 AT5G03610.1 27.217 327 203 12 29 342 44 348 4.66e-25 105
Msa0408490 AT1G28580.1 27.273 374 229 17 1 346 9 367 5.49e-25 105
Msa0408490 AT1G54030.2 26.562 256 164 6 29 282 53 286 9.06e-25 103
Msa0408490 AT1G28600.1 27.978 361 223 15 28 365 31 377 9.92e-25 104
Msa0408490 AT1G09390.1 26.596 376 209 17 24 373 33 367 1.96e-24 103
Msa0408490 AT3G62280.1 27.273 341 203 12 22 340 30 347 2.02e-24 103
Msa0408490 AT3G14210.1 25.496 353 223 12 23 359 29 357 3.84e-24 103
Msa0408490 AT3G09930.2 26.364 330 205 12 29 343 40 346 6.02e-24 102
Msa0408490 AT3G09930.1 26.364 330 205 12 29 343 40 346 6.02e-24 102
Msa0408490 AT2G31550.1 31.551 187 114 6 167 342 26 209 6.75e-24 99.0
Msa0408490 AT1G28570.1 27.177 379 222 17 2 346 6 364 8.40e-24 102
Msa0408490 AT1G28660.2 27.749 382 230 16 1 353 5 369 1.11e-23 101
Msa0408490 AT1G28660.1 27.937 383 229 17 1 353 5 370 1.30e-23 101
Msa0408490 AT1G28640.1 27.225 382 231 17 1 352 5 369 1.42e-23 101
Msa0408490 AT1G67830.1 25.915 355 214 13 27 348 29 367 5.53e-23 99.8
Msa0408490 AT4G01130.1 25.393 382 233 13 3 349 7 371 8.48e-22 96.3
Msa0408490 AT1G31550.2 24.731 372 239 14 1 346 9 365 9.46e-22 96.3
Msa0408490 AT1G28590.1 28.205 351 212 16 22 346 30 366 9.61e-22 96.3
Msa0408490 AT4G16233.1 32.031 128 86 1 237 363 5 132 4.43e-21 88.6
Msa0408490 AT1G54790.2 24.378 402 231 15 8 352 9 394 6.62e-21 94.0
Msa0408490 AT1G54020.1 24.803 254 175 5 110 359 20 261 2.35e-20 90.5
Msa0408490 AT1G54020.5 24.803 254 175 5 110 359 20 261 2.35e-20 90.5
Msa0408490 AT1G54020.3 24.803 254 175 5 110 359 20 261 2.35e-20 90.5
Msa0408490 AT5G03600.1 25.581 344 201 14 20 344 6 313 8.80e-19 86.7
Msa0408490 AT5G03600.2 25.000 344 203 14 20 344 41 348 9.93e-19 87.0
Msa0408490 AT1G54020.4 23.529 204 152 2 160 359 9 212 2.15e-18 84.0
Msa0408490 AT5G45910.1 26.302 384 235 16 4 353 1 370 4.35e-18 85.5
Msa0408490 AT3G14210.2 26.190 210 144 5 160 359 21 229 1.93e-17 82.0
Msa0408490 AT1G56670.2 26.282 312 175 11 7 289 12 297 1.12e-15 77.4
Msa0408490 AT1G28580.2 25.862 290 178 13 81 346 10 286 2.62e-15 76.6
Msa0408490 AT4G01130.3 26.540 211 129 5 161 349 79 285 6.20e-15 75.1
Msa0408490 AT4G01130.2 25.887 282 172 10 28 289 34 298 7.37e-14 72.4
Msa0408490 AT2G36325.1 24.260 338 205 13 25 342 44 350 8.33e-14 72.4
Msa0408490 AT3G62280.2 25.000 272 164 10 22 276 30 278 7.77e-12 65.9

Find 71 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAACTGCACTTACATAATT+TGG 0.117449 3_2:+48397690 None:intergenic
ATATTTAACTGACAATAAAT+TGG 0.254327 3_2:+48396286 None:intergenic
GGTGGTGCTGGAATATTTAA+AGG 0.285187 3_2:-48397720 Msa0408490:CDS
TCCATCTTCTTTGTTGTGAT+TGG 0.305205 3_2:-48396814 Msa0408490:CDS
TCTTTCTTCATCTTAAGTTT+AGG 0.311509 3_2:-48398616 Msa0408490:CDS
TTTCACTTTATTGAGTTTGT+TGG 0.329314 3_2:-48395803 Msa0408490:CDS
ATAGACAAGACCATATCTTT+TGG 0.336790 3_2:-48395966 Msa0408490:CDS
GTTCCTGCTGTTTATGTGTT+TGG 0.346997 3_2:-48398574 Msa0408490:CDS
AACTTTGCCTCTGGTGGTGC+TGG 0.348127 3_2:-48397732 Msa0408490:CDS
CTCCCAGCAGGTTTCTTAGT+TGG 0.349233 3_2:+48398466 None:intergenic
CCTCTCTCTAGCATCTTCTA+AGG 0.361160 3_2:-48397790 Msa0408490:CDS
GCTTCATATTAAGAAATTGA+TGG 0.374726 3_2:+48395630 None:intergenic
AAAGATATGGTCTTGTCTAT+TGG 0.388766 3_2:+48395969 None:intergenic
AGTAGCTCTTTCATACTAAC+AGG 0.395222 3_2:+48395865 None:intergenic
CATGTTAAAGAAATGGCAAT+TGG 0.399875 3_2:-48396246 Msa0408490:CDS
TTCACTCCATGTTAAAGAAA+TGG 0.408633 3_2:-48396253 Msa0408490:CDS
TTGATAATACCATGAGAAGT+TGG 0.412767 3_2:+48396158 None:intergenic
GAAGAATCGACAAAGCAAAT+AGG 0.417938 3_2:-48396868 Msa0408490:CDS
TTGGATTCTGAATGAGGTCT+TGG 0.419885 3_2:+48396177 None:intergenic
AAAGCTGCATGTTGTGGAAT+TGG 0.426836 3_2:-48396039 Msa0408490:CDS
GGAAACAATGATTACTTGAA+TGG 0.427461 3_2:-48398532 Msa0408490:CDS
ATTGTCGATAGACTTTATAA+TGG 0.436718 3_2:-48395907 Msa0408490:CDS
AGGATTCTTAGAAGCTCAAA+AGG 0.440544 3_2:-48398596 Msa0408490:CDS
CAATTGCCATTTCTTTAACA+TGG 0.440983 3_2:+48396247 None:intergenic
GCAAGGAGATTCGAGATTGC+TGG 0.450012 3_2:-48396374 Msa0408490:CDS
GGACTGAATCCCAAAAGATA+TGG 0.451724 3_2:+48395956 None:intergenic
AGTGGTGTTAACTTTGCCTC+TGG 0.462882 3_2:-48397741 Msa0408490:CDS
GAAGAAAGAGATAAAGAGAA+AGG 0.475686 3_2:+48398630 None:intergenic
AAGAATGCTGCTGATTTGAT+TGG 0.486579 3_2:-48398430 Msa0408490:intron
GGAAAATCAATACCATAGTA+AGG 0.489381 3_2:+48398487 None:intergenic
ATTGCTGGCGTGGCTGCAAT+CGG 0.491625 3_2:-48396359 Msa0408490:CDS
CCATTGCAAAACCTCCCAGC+AGG 0.499605 3_2:+48398454 None:intergenic
GCCAATCACAACAAAGAAGA+TGG 0.499649 3_2:+48396813 None:intergenic
GTCATTAAAAGTGCAACTAC+AGG 0.501266 3_2:-48396707 Msa0408490:intron
CTTTGATTACTTCAATTCAA+AGG 0.503540 3_2:-48396779 Msa0408490:CDS
TTTCCAACTAAGAAACCTGC+TGG 0.509034 3_2:-48398469 Msa0408490:CDS
GGTGTTAACTTTGCCTCTGG+TGG 0.510704 3_2:-48397738 Msa0408490:CDS
GGTGACTCACTTGTTGATGT+TGG 0.515859 3_2:-48398553 Msa0408490:CDS
GATGCTAGAGAGAGGTATGG+TGG 0.518679 3_2:+48397798 None:intergenic
TTTGTCTTTGTAGTGTGTAG+TGG 0.524025 3_2:+48398726 None:intergenic
GAAGATGCTAGAGAGAGGTA+TGG 0.527555 3_2:+48397795 None:intergenic
ATTCAGAATCCAACTTCTCA+TGG 0.531711 3_2:-48396167 Msa0408490:intron
ACAACAGTTTGTCGAATCCA+TGG 0.541949 3_2:-48396734 Msa0408490:CDS
TTGTTCTTAAGCCTCAATGT+AGG 0.542501 3_2:+48396329 None:intergenic
TGGATTCGACAAACTGTTGT+GGG 0.544904 3_2:+48396737 None:intergenic
ATGTTTGCACTTGGTAAACA+TGG 0.553043 3_2:+48395997 None:intergenic
AATACATTTAACAAAGCAAG+TGG 0.558076 3_2:-48396911 Msa0408490:CDS
TTGGTACAAATGTTTGCACT+TGG 0.559430 3_2:+48395988 None:intergenic
GAGAAGTTGGATTCTGAATG+AGG 0.559748 3_2:+48396171 None:intergenic
AAAGTTAACACCACTCAAGA+AGG 0.564501 3_2:+48397749 None:intergenic
ATGGATTCGACAAACTGTTG+TGG 0.566468 3_2:+48396736 None:intergenic
GTGTAGTGGTTGAGAATAGT+CGG 0.567243 3_2:+48398740 None:intergenic
TCGGATGTTGTCCTACATTG+AGG 0.568542 3_2:-48396340 Msa0408490:CDS
GAGATTCGAGATTGCTGGCG+TGG 0.575105 3_2:-48396369 Msa0408490:CDS
ATTTCTTTAACATGGAGTGA+AGG 0.582231 3_2:+48396255 None:intergenic
ATGCGAGTTACTGCCTCAGT+AGG 0.597608 3_2:+48395931 None:intergenic
TCACCAAACACATAAACAGC+AGG 0.599187 3_2:+48398571 None:intergenic
GGTATGGTGGTGAAGTTGCA+AGG 0.604428 3_2:+48397811 None:intergenic
TTCCAACTAAGAAACCTGCT+GGG 0.609808 3_2:-48398468 Msa0408490:CDS
CCTTAGAAGATGCTAGAGAG+AGG 0.626625 3_2:+48397790 None:intergenic
GAGTTACTGCCTCAGTAGGA+TGG 0.632248 3_2:+48395935 None:intergenic
CATTACAAAACAGACAACAT+AGG 0.633363 3_2:-48398673 Msa0408490:five_prime_UTR
AAGAATGCATCCTTCTTGAG+TGG 0.637438 3_2:-48397759 Msa0408490:CDS
GATGTGAAAGCTGCATGTTG+TGG 0.645421 3_2:-48396045 Msa0408490:CDS
AAATATTCCAGCACCACCAG+AGG 0.649840 3_2:+48397725 None:intergenic
ACAGGAGATGTGTATTGTGA+TGG 0.654472 3_2:+48395883 None:intergenic
CAACTAAGAAACCTGCTGGG+AGG 0.666597 3_2:-48398465 Msa0408490:CDS
CAAAGAAGATGGATTCTGAG+AGG 0.677477 3_2:+48396824 None:intergenic
GGATTCAGTCCATCCTACTG+AGG 0.681661 3_2:-48395944 Msa0408490:CDS
GAATTACCAAGAGAAAAGTG+TGG 0.722332 3_2:-48395740 Msa0408490:three_prime_UTR
GGATTCGACAAACTGTTGTG+GGG 0.742366 3_2:+48396738 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAACATTAAATAAGTTTAT+TGG - chr3_2:48398265-48398284 Msa0408490:intron 10.0%
!!! ATTTTTTTTAGCAACATTTT+TGG - chr3_2:48396213-48396232 Msa0408490:CDS 15.0%
!! TCATTATTAATATTAACTTC+TGG + chr3_2:48396486-48396505 None:intergenic 15.0%
!!! ATTGATTTAATGCAAAAATT+AGG + chr3_2:48396527-48396546 None:intergenic 15.0%
!! TAATATCTTTGTTAAAAGTT+CGG + chr3_2:48397116-48397135 None:intergenic 15.0%
!! TTTCCAAATAAAATATACAA+TGG - chr3_2:48397143-48397162 Msa0408490:intron 15.0%
!!! TATAAAGATTTTAGAGATTT+CGG + chr3_2:48397865-48397884 None:intergenic 15.0%
!! ATATTTAACTGACAATAAAT+TGG + chr3_2:48398099-48398118 None:intergenic 15.0%
!!! TATTTTTTTCTATTTTTTGC+AGG - chr3_2:48398307-48398326 Msa0408490:intron 15.0%
!! AATAAAGTGAAAAATGTAAA+GGG + chr3_2:48398571-48398590 None:intergenic 15.0%
!!! CAACCATTGTATATTTTATT+TGG + chr3_2:48397149-48397168 None:intergenic 20.0%
!! TAACAACTATTACTACATTT+GGG + chr3_2:48397378-48397397 None:intergenic 20.0%
!! ATAACAACTATTACTACATT+TGG + chr3_2:48397379-48397398 None:intergenic 20.0%
!!! TTAATCACTTTTGACTTTAA+GGG + chr3_2:48397402-48397421 None:intergenic 20.0%
!!! TTTAATCACTTTTGACTTTA+AGG + chr3_2:48397403-48397422 None:intergenic 20.0%
!! CAATAAAGTGAAAAATGTAA+AGG + chr3_2:48398572-48398591 None:intergenic 20.0%
! TCTTTCTTCATCTTAAGTTT+AGG - chr3_2:48395766-48395785 Msa0408490:exon 25.0%
!!! AAAGCTATTTTACCTTACTA+TGG - chr3_2:48395883-48395902 Msa0408490:CDS 25.0%
! AACAGTAATTTGAGAACATA+TGG + chr3_2:48396170-48396189 None:intergenic 25.0%
!! GTTTTATCAAATATCTTCCT+TGG - chr3_2:48396187-48396206 Msa0408490:CDS 25.0%
! TTGCTAAAAAAAATTGTCCA+AGG + chr3_2:48396207-48396226 None:intergenic 25.0%
! ATGTTATGTGAGAAAGAAAA+AGG - chr3_2:48396403-48396422 Msa0408490:intron 25.0%
! AAGAAAAAGGTAGGAAAAAA+AGG - chr3_2:48396416-48396435 Msa0408490:intron 25.0%
!!! AATGTGACACATAGTTTTTT+TGG + chr3_2:48396941-48396960 None:intergenic 25.0%
!!! TATGGGTTGTTTTTTCAATT+TGG + chr3_2:48397072-48397091 None:intergenic 25.0%
! ATTGAAAAAACAACCCATAT+CGG - chr3_2:48397073-48397092 Msa0408490:intron 25.0%
! TAAAATGACCCAATTATATC+TGG - chr3_2:48397191-48397210 Msa0408490:intron 25.0%
! AAAATGACCCAATTATATCT+GGG - chr3_2:48397192-48397211 Msa0408490:intron 25.0%
! AGTCAAAAGTGATTAAAGAA+TGG - chr3_2:48397406-48397425 Msa0408490:intron 25.0%
! AATACATTTAACAAAGCAAG+TGG - chr3_2:48397471-48397490 Msa0408490:intron 25.0%
! CTTTGATTACTTCAATTCAA+AGG - chr3_2:48397603-48397622 Msa0408490:intron 25.0%
!!! ATGGTTTTAAATTGTGTTTG+CGG - chr3_2:48397756-48397775 Msa0408490:CDS 25.0%
!! TATTTGCATGCATTTTCATT+TGG - chr3_2:48397947-48397966 Msa0408490:intron 25.0%
! TCACAGAGATTATACAAAAA+TGG - chr3_2:48397984-48398003 Msa0408490:intron 25.0%
! ATTGTCGATAGACTTTATAA+TGG - chr3_2:48398475-48398494 Msa0408490:CDS 25.0%
! TTTCACTTTATTGAGTTTGT+TGG - chr3_2:48398579-48398598 Msa0408490:CDS 25.0%
! GCTTCATATTAAGAAATTGA+TGG + chr3_2:48398755-48398774 None:intergenic 25.0%
CATTACAAAACAGACAACAT+AGG - chr3_2:48395709-48395728 Msa0408490:three_prime_UTR 30.0%
GAAGAAAGAGATAAAGAGAA+AGG + chr3_2:48395755-48395774 None:intergenic 30.0%
GGAAACAATGATTACTTGAA+TGG - chr3_2:48395850-48395869 Msa0408490:CDS 30.0%
! AGGTAAAATAGCTTTTGCAA+AGG + chr3_2:48395878-48395897 None:intergenic 30.0%
GGAAAATCAATACCATAGTA+AGG + chr3_2:48395898-48395917 None:intergenic 30.0%
! ACTGTTTTCATACACTATCT+TGG - chr3_2:48396092-48396111 Msa0408490:intron 30.0%
GAAAAACATTGCAGAAAACA+AGG + chr3_2:48396245-48396264 None:intergenic 30.0%
! TTTCTGCAATGTTTTTCTCA+TGG - chr3_2:48396248-48396267 Msa0408490:CDS 30.0%
GGAAGAAAACTCATGTTTAT+TGG - chr3_2:48396269-48396288 Msa0408490:CDS 30.0%
TATGTGAGAAAGAAAAAGGT+AGG - chr3_2:48396407-48396426 Msa0408490:intron 30.0%
ATTGTTACAGCTGAAAAAGT+AGG - chr3_2:48396548-48396567 Msa0408490:intron 30.0%
AGAACTGCACTTACATAATT+TGG + chr3_2:48396695-48396714 None:intergenic 30.0%
TACAAACACAAAAGCAAAGT+TGG + chr3_2:48396742-48396761 None:intergenic 30.0%
TTGTGTTTGTACGATAAACA+TGG - chr3_2:48396751-48396770 Msa0408490:CDS 30.0%
TGTGTTTGTACGATAAACAT+GGG - chr3_2:48396752-48396771 Msa0408490:CDS 30.0%
! TAGACCACAAAATTGCATTT+TGG + chr3_2:48396780-48396799 None:intergenic 30.0%
! TTTTGTGGTCTATTTCAACA+TGG - chr3_2:48396788-48396807 Msa0408490:CDS 30.0%
TATTTCAACATGGCCAAAAA+GGG - chr3_2:48396798-48396817 Msa0408490:CDS 30.0%
AAAAACTATGTGTCACATTG+TGG - chr3_2:48396942-48396961 Msa0408490:intron 30.0%
TTTAACTGGACCAAAATTGA+CGG - chr3_2:48397248-48397267 Msa0408490:intron 30.0%
!! ACTTTCATTTTTGTCTCAAG+TGG + chr3_2:48397315-48397334 None:intergenic 30.0%
TACAAAAAATGTCACCAGTT+GGG + chr3_2:48397442-48397461 None:intergenic 30.0%
!! TGAGCATAGTTCTAAATATG+CGG + chr3_2:48397894-48397913 None:intergenic 30.0%
GATTATACAAAAATGGTGCA+AGG - chr3_2:48397991-48398010 Msa0408490:intron 30.0%
ATTTCTTTAACATGGAGTGA+AGG + chr3_2:48398130-48398149 None:intergenic 30.0%
TTCACTCCATGTTAAAGAAA+TGG - chr3_2:48398129-48398148 Msa0408490:intron 30.0%
! CAATTGCCATTTCTTTAACA+TGG + chr3_2:48398138-48398157 None:intergenic 30.0%
CATGTTAAAGAAATGGCAAT+TGG - chr3_2:48398136-48398155 Msa0408490:intron 30.0%
! TTGATAATACCATGAGAAGT+TGG + chr3_2:48398227-48398246 None:intergenic 30.0%
!! AAAGATATGGTCTTGTCTAT+TGG + chr3_2:48398416-48398435 None:intergenic 30.0%
! ATAGACAAGACCATATCTTT+TGG - chr3_2:48398416-48398435 Msa0408490:intron 30.0%
! TAGACAAGACCATATCTTTT+GGG - chr3_2:48398417-48398436 Msa0408490:intron 30.0%
TTTGTCTTTGTAGTGTGTAG+TGG + chr3_2:48395659-48395678 None:intergenic 35.0%
AGGATTCTTAGAAGCTCAAA+AGG - chr3_2:48395786-48395805 Msa0408490:CDS 35.0%
!! AAGAATGCTGCTGATTTGAT+TGG - chr3_2:48395952-48395971 Msa0408490:CDS 35.0%
TGAAAGAGAGACATCACAAT+TGG - chr3_2:48396309-48396328 Msa0408490:CDS 35.0%
AAAGTTAACACCACTCAAGA+AGG + chr3_2:48396636-48396655 None:intergenic 35.0%
GTGTTTGTACGATAAACATG+GGG - chr3_2:48396753-48396772 Msa0408490:CDS 35.0%
CTATTTCAACATGGCCAAAA+AGG - chr3_2:48396797-48396816 Msa0408490:CDS 35.0%
!!! TTGGGTCATTTTAACTCTCT+GGG + chr3_2:48397184-48397203 None:intergenic 35.0%
!!! ATTGGGTCATTTTAACTCTC+TGG + chr3_2:48397185-48397204 None:intergenic 35.0%
TTCGTAGCCCAGATATAATT+GGG + chr3_2:48397202-48397221 None:intergenic 35.0%
TTTCGTAGCCCAGATATAAT+TGG + chr3_2:48397203-48397222 None:intergenic 35.0%
GTTAAATGAGCTAGTTCGAT+GGG + chr3_2:48397234-48397253 None:intergenic 35.0%
AGTTAAATGAGCTAGTTCGA+TGG + chr3_2:48397235-48397254 None:intergenic 35.0%
ATCGAACTAGCTCATTTAAC+TGG - chr3_2:48397234-48397253 Msa0408490:intron 35.0%
ATGGAAAAATTTCTCCCAAC+TGG - chr3_2:48397425-48397444 Msa0408490:intron 35.0%
CTACAAAAAATGTCACCAGT+TGG + chr3_2:48397443-48397462 None:intergenic 35.0%
GAAGAATCGACAAAGCAAAT+AGG - chr3_2:48397514-48397533 Msa0408490:intron 35.0%
! TCCATCTTCTTTGTTGTGAT+TGG - chr3_2:48397568-48397587 Msa0408490:intron 35.0%
! GTCATTAAAAGTGCAACTAC+AGG - chr3_2:48397675-48397694 Msa0408490:intron 35.0%
TAACTCTATGTATACGAGCA+TGG - chr3_2:48397737-48397756 Msa0408490:CDS 35.0%
CACTACAAACCTTGATATTG+CGG - chr3_2:48397794-48397813 Msa0408490:CDS 35.0%
! TTCATTTTGCCGCAATATCA+AGG + chr3_2:48397806-48397825 None:intergenic 35.0%
ACAACATTGCAGCTCAATTA+CGG + chr3_2:48397840-48397859 None:intergenic 35.0%
! GCATGCATTTTCATTTGGTA+TGG - chr3_2:48397952-48397971 Msa0408490:intron 35.0%
TTGTTCTTAAGCCTCAATGT+AGG + chr3_2:48398056-48398075 None:intergenic 35.0%
ATTCAGAATCCAACTTCTCA+TGG - chr3_2:48398215-48398234 Msa0408490:intron 35.0%
ATGTTTGCACTTGGTAAACA+TGG + chr3_2:48398388-48398407 None:intergenic 35.0%
TTGGTACAAATGTTTGCACT+TGG + chr3_2:48398397-48398416 None:intergenic 35.0%
AGTAGCTCTTTCATACTAAC+AGG + chr3_2:48398520-48398539 None:intergenic 35.0%
GTGAAAAATGTAAAGGGACT+AGG + chr3_2:48398565-48398584 None:intergenic 35.0%
GAATTACCAAGAGAAAAGTG+TGG - chr3_2:48398642-48398661 Msa0408490:CDS 35.0%
GTGTAGTGGTTGAGAATAGT+CGG + chr3_2:48395645-48395664 None:intergenic 40.0%
! GTTCCTGCTGTTTATGTGTT+TGG - chr3_2:48395808-48395827 Msa0408490:CDS 40.0%
TCACCAAACACATAAACAGC+AGG + chr3_2:48395814-48395833 None:intergenic 40.0%
TTTCCAACTAAGAAACCTGC+TGG - chr3_2:48395913-48395932 Msa0408490:CDS 40.0%
TTCCAACTAAGAAACCTGCT+GGG - chr3_2:48395914-48395933 Msa0408490:CDS 40.0%
GTCTCTCTTTCATGCTTTGT+GGG + chr3_2:48396301-48396320 None:intergenic 40.0%
TGTCTCTCTTTCATGCTTTG+TGG + chr3_2:48396302-48396321 None:intergenic 40.0%
AGATTGTGCAGTGCATTTCA+AGG - chr3_2:48396459-48396478 Msa0408490:intron 40.0%
AAGAATGCATCCTTCTTGAG+TGG - chr3_2:48396623-48396642 Msa0408490:intron 40.0%
! GGTGGTGCTGGAATATTTAA+AGG - chr3_2:48396662-48396681 Msa0408490:intron 40.0%
! GGGTCCAAAATGCAATTTTG+TGG - chr3_2:48396773-48396792 Msa0408490:CDS 40.0%
! ATCACAAGTGGTTCCCTTTT+TGG + chr3_2:48396814-48396833 None:intergenic 40.0%
GGAACCACTTGTGATATTTG+TGG - chr3_2:48396819-48396838 Msa0408490:CDS 40.0%
ACCACTTGTGATATTTGTGG+TGG - chr3_2:48396822-48396841 Msa0408490:CDS 40.0%
CCACTTGTGATATTTGTGGT+GGG - chr3_2:48396823-48396842 Msa0408490:CDS 40.0%
AAAAGCCACATGTCACATTG+CGG + chr3_2:48396871-48396890 None:intergenic 40.0%
ACTATGTGTCACATTGTGGT+TGG - chr3_2:48396946-48396965 Msa0408490:intron 40.0%
ATCTGGGCTACGAAACATAT+CGG - chr3_2:48397208-48397227 Msa0408490:intron 40.0%
AAAATTGACGGCTCTACTTG+CGG - chr3_2:48397260-48397279 Msa0408490:intron 40.0%
TACTTGCGGACAATGAAGTA+GGG - chr3_2:48397274-48397293 Msa0408490:intron 40.0%
! CAAAGAAGATGGATTCTGAG+AGG + chr3_2:48397561-48397580 None:intergenic 40.0%
GCCAATCACAACAAAGAAGA+TGG + chr3_2:48397572-48397591 None:intergenic 40.0%
TGGATTCGACAAACTGTTGT+GGG + chr3_2:48397648-48397667 None:intergenic 40.0%
ATGGATTCGACAAACTGTTG+TGG + chr3_2:48397649-48397668 None:intergenic 40.0%
ACAACAGTTTGTCGAATCCA+TGG - chr3_2:48397648-48397667 Msa0408490:intron 40.0%
! CACTTTTAATGACGAAGCCA+TGG + chr3_2:48397668-48397687 None:intergenic 40.0%
GCAACTACAGGTAAACACAA+TGG - chr3_2:48397687-48397706 Msa0408490:intron 40.0%
TTGGATTCTGAATGAGGTCT+TGG + chr3_2:48398208-48398227 None:intergenic 40.0%
GAGAAGTTGGATTCTGAATG+AGG + chr3_2:48398214-48398233 None:intergenic 40.0%
AAAGCTGCATGTTGTGGAAT+TGG - chr3_2:48398343-48398362 Msa0408490:intron 40.0%
GGACTGAATCCCAAAAGATA+TGG + chr3_2:48398429-48398448 None:intergenic 40.0%
ACAGGAGATGTGTATTGTGA+TGG + chr3_2:48398502-48398521 None:intergenic 40.0%
! GGTGACTCACTTGTTGATGT+TGG - chr3_2:48395829-48395848 Msa0408490:CDS 45.0%
GAAGATGCTAGAGAGAGGTA+TGG + chr3_2:48396590-48396609 None:intergenic 45.0%
CCTTAGAAGATGCTAGAGAG+AGG + chr3_2:48396595-48396614 None:intergenic 45.0%
CCTCTCTCTAGCATCTTCTA+AGG - chr3_2:48396592-48396611 Msa0408490:intron 45.0%
! AGTGGTGTTAACTTTGCCTC+TGG - chr3_2:48396641-48396660 Msa0408490:intron 45.0%
AAATATTCCAGCACCACCAG+AGG + chr3_2:48396660-48396679 None:intergenic 45.0%
CCCACCACAAATATCACAAG+TGG + chr3_2:48396826-48396845 None:intergenic 45.0%
CACTTGTGTGACATTGTGGT+GGG + chr3_2:48396990-48397009 None:intergenic 45.0%
GAACCACTTGTGTGACATTG+TGG + chr3_2:48396994-48397013 None:intergenic 45.0%
!!! TCCAATGCCTCACTTTTTGG+CGG + chr3_2:48397017-48397036 None:intergenic 45.0%
!! CAGTCCAATGCCTCACTTTT+TGG + chr3_2:48397020-48397039 None:intergenic 45.0%
CAATTTGGTCCACTGAACTG+CGG + chr3_2:48397057-48397076 None:intergenic 45.0%
! GCAAGTAGAGCCGTCAATTT+TGG + chr3_2:48397261-48397280 None:intergenic 45.0%
CTACTTGCGGACAATGAAGT+AGG - chr3_2:48397273-48397292 Msa0408490:intron 45.0%
GGATTCGACAAACTGTTGTG+GGG + chr3_2:48397647-48397666 None:intergenic 45.0%
TCGGATGTTGTCCTACATTG+AGG - chr3_2:48398042-48398061 Msa0408490:intron 45.0%
GATGTGAAAGCTGCATGTTG+TGG - chr3_2:48398337-48398356 Msa0408490:intron 45.0%
! GTTGTGCCACACTTTTCTCT+TGG + chr3_2:48398651-48398670 None:intergenic 45.0%
CTCCCAGCAGGTTTCTTAGT+TGG + chr3_2:48395919-48395938 None:intergenic 50.0%
CAACTAAGAAACCTGCTGGG+AGG - chr3_2:48395917-48395936 Msa0408490:CDS 50.0%
! GGTATGGTGGTGAAGTTGCA+AGG + chr3_2:48396574-48396593 None:intergenic 50.0%
! GATGCTAGAGAGAGGTATGG+TGG + chr3_2:48396587-48396606 None:intergenic 50.0%
GGTGTTAACTTTGCCTCTGG+TGG - chr3_2:48396644-48396663 Msa0408490:intron 50.0%
CCACATGTCACATTGCGGTT+GGG + chr3_2:48396866-48396885 None:intergenic 50.0%
CCACTTGTGTGACATTGTGG+TGG + chr3_2:48396991-48397010 None:intergenic 50.0%
CCACCACAATGTCACACAAG+TGG - chr3_2:48396988-48397007 Msa0408490:intron 50.0%
!!! CCAATGCCTCACTTTTTGGC+GGG + chr3_2:48397016-48397035 None:intergenic 50.0%
GACTCAGTCTAGGCCGATAT+GGG + chr3_2:48397089-48397108 None:intergenic 50.0%
TGACTCAGTCTAGGCCGATA+TGG + chr3_2:48397090-48397109 None:intergenic 50.0%
GTTCGGACATGACTCAGTCT+AGG + chr3_2:48397099-48397118 None:intergenic 50.0%
GCAAGGAGATTCGAGATTGC+TGG - chr3_2:48398008-48398027 Msa0408490:intron 50.0%
GGATTCAGTCCATCCTACTG+AGG - chr3_2:48398438-48398457 Msa0408490:CDS 50.0%
GAGTTACTGCCTCAGTAGGA+TGG + chr3_2:48398450-48398469 None:intergenic 50.0%
ATGCGAGTTACTGCCTCAGT+AGG + chr3_2:48398454-48398473 None:intergenic 50.0%
CCATTGCAAAACCTCCCAGC+AGG + chr3_2:48395931-48395950 None:intergenic 55.0%
! CCTGCTGGGAGGTTTTGCAA+TGG - chr3_2:48395928-48395947 Msa0408490:CDS 55.0%
! AACTTTGCCTCTGGTGGTGC+TGG - chr3_2:48396650-48396669 Msa0408490:intron 55.0%
CCCAACCGCAATGTGACATG+TGG - chr3_2:48396863-48396882 Msa0408490:CDS 55.0%
GCCACATGTCACATTGCGGT+TGG + chr3_2:48396867-48396886 None:intergenic 55.0%
GTGGTTCCCGCCAAAAAGTG+AGG - chr3_2:48397007-48397026 Msa0408490:intron 55.0%
CCCGCCAAAAAGTGAGGCAT+TGG - chr3_2:48397013-48397032 Msa0408490:intron 55.0%
TTTGGTCCACTGAACTGCGG+CGG + chr3_2:48397054-48397073 None:intergenic 55.0%
GAGATTCGAGATTGCTGGCG+TGG - chr3_2:48398013-48398032 Msa0408490:intron 55.0%
ATTGCTGGCGTGGCTGCAAT+CGG - chr3_2:48398023-48398042 Msa0408490:intron 55.0%
TTGGTCCACTGAACTGCGGC+GGG + chr3_2:48397053-48397072 None:intergenic 60.0%
CCACTGAACTGCGGCGGGTC+AGG + chr3_2:48397048-48397067 None:intergenic 70.0%
CCTGACCCGCCGCAGTTCAG+TGG - chr3_2:48397045-48397064 Msa0408490:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 48395610 48398794 48395610 ID=Msa0408490;Name=Msa0408490
chr3_2 mRNA 48395610 48398794 48395610 ID=Msa0408490-mRNA-1;Parent=Msa0408490;Name=Msa0408490-mRNA-1;_AED=0.22;_eAED=0.22;_QI=123|1|1|1|1|1|5|164|388
chr3_2 exon 48395610 48396075 48395610 ID=Msa0408490-mRNA-1:exon:9409;Parent=Msa0408490-mRNA-1
chr3_2 exon 48396168 48396414 48396168 ID=Msa0408490-mRNA-1:exon:9408;Parent=Msa0408490-mRNA-1
chr3_2 exon 48396708 48396941 48396708 ID=Msa0408490-mRNA-1:exon:9407;Parent=Msa0408490-mRNA-1
chr3_2 exon 48397704 48397846 48397704 ID=Msa0408490-mRNA-1:exon:9406;Parent=Msa0408490-mRNA-1
chr3_2 exon 48398431 48398794 48398431 ID=Msa0408490-mRNA-1:exon:9405;Parent=Msa0408490-mRNA-1
chr3_2 five_prime_UTR 48398672 48398794 48398672 ID=Msa0408490-mRNA-1:five_prime_utr;Parent=Msa0408490-mRNA-1
chr3_2 CDS 48398431 48398671 48398431 ID=Msa0408490-mRNA-1:cds;Parent=Msa0408490-mRNA-1
chr3_2 CDS 48397704 48397846 48397704 ID=Msa0408490-mRNA-1:cds;Parent=Msa0408490-mRNA-1
chr3_2 CDS 48396708 48396941 48396708 ID=Msa0408490-mRNA-1:cds;Parent=Msa0408490-mRNA-1
chr3_2 CDS 48396168 48396414 48396168 ID=Msa0408490-mRNA-1:cds;Parent=Msa0408490-mRNA-1
chr3_2 CDS 48395774 48396075 48395774 ID=Msa0408490-mRNA-1:cds;Parent=Msa0408490-mRNA-1
chr3_2 three_prime_UTR 48395610 48395773 48395610 ID=Msa0408490-mRNA-1:three_prime_utr;Parent=Msa0408490-mRNA-1
Gene Sequence

>Msa0408490

ATGATGAGATTGAGAACTTCCTTTCTCTTTATCTCTTTCTTCATCTTAAGTTTAGGATTCTTAGAAGCTCAAAAGGTTCCTGCTGTTTATGTGTTTGGTGACTCACTTGTTGATGTTGGAAACAATGATTACTTGAATGGTACCTTTGCAAAAGCTATTTTACCTTACTATGGTATTGATTTTCCAACTAAGAAACCTGCTGGGAGGTTTTGCAATGGCAAGAATGCTGCTGATTTGATTGCTGAAAAAGTAGGCCTTGCAACTTCACCACCATACCTCTCTCTAGCATCTTCTAAGGTAAAAAACAAGAATGCATCCTTCTTGAGTGGTGTTAACTTTGCCTCTGGTGGTGCTGGAATATTTAAAGGCACAGATCCAAATTATATACGATCAATACATTTAACAAAGCAAGTGGACTACTATTCACAAATGTATGAAGAATCGACAAAGCAAATAGGAGTATCAACACTTCAGAAACACCTCTCAGAATCCATCTTCTTTGTTGTGATTGGCAACAATGATATCTTTGATTACTTCAATTCAAAGGATCTTCAAAAGAAAAACACCCCACAACAGTTTGTCGAATCCATGGCTTCGTCATTAAAAGTGCAACTACAGAGATTATACAAAAATGGTGCAAGGAGATTCGAGATTGCTGGCGTGGCTGCAATCGGATGTTGTCCTACATTGAGGCTTAAGAACAAAACAGAATGCTTCTCAGAAGCCAATTTATTGTCAGTTAAATATAATGAAAACCTTCACTCCATGTTAAAGAAATGGCAATTGGAGAGCAAGAACTTAAGTTACTCATACTTTGATACTTATGCTGCTATCCAAGACCTCATTCAGAATCCAACTTCTCATGGATTTGTAGATGTGAAAGCTGCATGTTGTGGAATTGGAGAACTGAATGCTGAACTTCCATGTTTACCAAGTGCAAACATTTGTACCAATAGACAAGACCATATCTTTTGGGATTCAGTCCATCCTACTGAGGCAGTAACTCGCATAATTGTCGATAGACTTTATAATGGACCATCACAATACACATCTCCTGTTAGTATGAAAGAGCTACTTCATGTATCAATTGCTAAATCACCTAGTCCCTTTACATTTTTCACTTTATTGAGTTTGTTGGTTACTTGTTATCAAACAAAAACAAATTAG
Protein sequence

>Msa0408490

MMRLRTSFLFISFFILSLGFLEAQKVPAVYVFGDSLVDVGNNDYLNGTFAKAILPYYGIDFPTKKPAGRFCNGKNAADLIAEKVGLATSPPYLSLASSKVKNKNASFLSGVNFASGGAGIFKGTDPNYIRSIHLTKQVDYYSQMYEESTKQIGVSTLQKHLSESIFFVVIGNNDIFDYFNSKDLQKKNTPQQFVESMASSLKVQLQRLYKNGARRFEIAGVAAIGCCPTLRLKNKTECFSEANLLSVKYNENLHSMLKKWQLESKNLSYSYFDTYAAIQDLIQNPTSHGFVDVKAACCGIGELNAELPCLPSANICTNRQDHIFWDSVHPTEAVTRIIVDRLYNGPSQYTSPVSMKELLHVSIAKSPSPFTFFTLLSLLVTCYQTKTN*