AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0748470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0748470 MtrunA17_Chr1g0188121 97.941 340 7 0 1 340 1 340 0.0 693
Msa0748470 MtrunA17_Chr1g0184951 77.233 347 72 2 1 340 1 347 2.67e-177 495
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0748470 AT3G63410.1 76.522 345 69 4 1 340 1 338 0.0 503

Find 132 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACACAAGAAAGAAGCATTT+TGG 0.213825 5_2:+1731476 Msa0748470:CDS
AGCTAAGGAGTTGTGGAATA+TGG 0.218960 5_2:-1730922 None:intergenic
AGCATATAAGCCAAGTTTAT+TGG 0.221137 5_2:+1733583 Msa0748470:three_prime_UTR
GTCCTGTATACCCAACATTT+TGG 0.229561 5_2:+1732879 Msa0748470:CDS
TCTTTAAGCCACATGTAAAT+TGG 0.231207 5_2:-1733292 None:intergenic
CGCACACCGCGATACCATTT+TGG 0.239417 5_2:-1733010 None:intergenic
AGAAACACCAATGGATTTAC+AGG 0.256390 5_2:-1733220 None:intergenic
CTGATTTCTGATTTCATGTC+TGG 0.273349 5_2:+1733633 Msa0748470:three_prime_UTR
TTCAGCACCACTAAGCATTA+AGG 0.275776 5_2:-1731272 None:intergenic
GTATATTGAATGGTTTAAAA+AGG 0.282915 5_2:+1732952 Msa0748470:CDS
TTTCTCTCAAGGCTCATTCT+TGG 0.311957 5_2:+1733238 Msa0748470:CDS
TTCTTGTGTTGGATGAATCT+AGG 0.315559 5_2:-1731463 None:intergenic
TCAATATACTCTTCCTCCTT+AGG 0.315806 5_2:-1732938 None:intergenic
GTTAATTTGTTGACATGTTT+TGG 0.318002 5_2:+1733464 Msa0748470:three_prime_UTR
ATGTCAACAAATTAACATTA+TGG 0.319352 5_2:-1733457 None:intergenic
GCCTGCCCTTTGGAACAATT+TGG 0.321260 5_2:-1733315 None:intergenic
GCATATAGAGTTCTGAAAAT+AGG 0.330673 5_2:+1732836 Msa0748470:CDS
TTTGCAACTGAAATGGAAAA+TGG 0.332120 5_2:-1731136 None:intergenic
ATCAGGCGACTCTCCCCTTC+AGG 0.333951 5_2:+1733081 Msa0748470:CDS
GGAGGCAAAGCGTGCATTAT+AGG 0.339249 5_2:+1732857 Msa0748470:CDS
TATAAAAGTGTTAATTTCCT+TGG 0.349879 5_2:+1731212 Msa0748470:five_prime_UTR
TGAAAAGAATAGGTCCAAAA+TGG 0.366680 5_2:+1732996 Msa0748470:CDS
TGTTGTTCAGTATTGAATAC+TGG 0.372308 5_2:+1732786 Msa0748470:intron
GATTAAATACGCCTGCCCTT+TGG 0.378600 5_2:-1733325 None:intergenic
TTTGAACATTGTTTATTTGA+AGG 0.383114 5_2:+1733539 Msa0748470:three_prime_UTR
TTGGAGAATCAAGTAAAGTT+GGG 0.387660 5_2:+1733353 Msa0748470:three_prime_UTR
ACTGGTGTCAAACCTTTATC+AGG 0.388260 5_2:+1733064 Msa0748470:CDS
TTACTTAAATTTAAGTGTTA+CGG 0.388621 5_2:+1733823 Msa0748470:three_prime_UTR
AACCAAAATGTTGGGTATAC+AGG 0.392300 5_2:-1732881 None:intergenic
GTGGATGTTGGAGGAGGAAC+TGG 0.396715 5_2:+1731616 Msa0748470:CDS
AGCATAGTTCCATCTGGATT+AGG 0.398282 5_2:+1731313 Msa0748470:CDS
TGTTTATTTGAAGGTTAGTC+AGG 0.400689 5_2:+1733548 Msa0748470:three_prime_UTR
ATTGGAGAATCAAGTAAAGT+TGG 0.403522 5_2:+1733352 Msa0748470:three_prime_UTR
TTTGGAATTTGCAACTGAAA+TGG 0.404023 5_2:-1731143 None:intergenic
TGGTAAGGTACATAATGTTA+TGG 0.407729 5_2:-1731116 None:intergenic
GCGGCGGCACGGCCTCATCA+TGG 0.410184 5_2:+1733030 Msa0748470:CDS
AAAATGCTTCTTTCTTGTGT+TGG 0.410236 5_2:-1731474 None:intergenic
AGGGGAGAGTCGCCTGATAA+AGG 0.412042 5_2:-1733076 None:intergenic
GAATCGTAGTAAAATTTAAG+AGG 0.413419 5_2:-1733499 None:intergenic
GAAATGAGACATGGATGGTT+TGG 0.414913 5_2:-1731161 None:intergenic
CAATATACTCTTCCTCCTTA+GGG 0.416784 5_2:-1732937 None:intergenic
AGAAATAATGCAGTTTCATA+TGG 0.418931 5_2:+1731373 Msa0748470:CDS
TTAATGCCACGCTGTGGATC+AGG 0.419899 5_2:-1732809 None:intergenic
CAGACATGAAATCAGAAATC+AGG 0.420206 5_2:-1733632 None:intergenic
AAAGAATGTAAGATAATTGA+AGG 0.432985 5_2:+1731742 Msa0748470:CDS
ATTAATAGCATAGTTCCATC+TGG 0.434382 5_2:+1731307 Msa0748470:CDS
ATGGCCTCCTTAATGCTTAG+TGG 0.436810 5_2:+1731265 Msa0748470:CDS
GCTAAGGAGTTGTGGAATAT+GGG 0.445649 5_2:-1730921 None:intergenic
CTTTATGTAGCTTGGTCCTA+AGG 0.446738 5_2:+1733180 Msa0748470:intron
TCCGCATAATCAGTTGGAAA+TGG 0.449194 5_2:-1731781 None:intergenic
ATCATGGGTTGTTCTGTCAC+TGG 0.452148 5_2:+1733046 Msa0748470:CDS
GATGTCAAGCTGAAAAGAAT+AGG 0.453690 5_2:+1732986 Msa0748470:CDS
ATTATGGAAGGCAAAGTTCA+TGG 0.458064 5_2:-1733441 None:intergenic
CGGCGGCACGGCCTCATCAT+GGG 0.458451 5_2:+1733031 Msa0748470:CDS
GCGGACCGATATGTTTCTGC+TGG 0.461499 5_2:+1731799 Msa0748470:CDS
TTATACCTATCCAATAAACT+TGG 0.483592 5_2:-1733593 None:intergenic
CATCCACAACTCGCATTCTC+CGG 0.485995 5_2:-1731600 None:intergenic
ACCAAATTGTTCCAAAGGGC+AGG 0.486418 5_2:+1733314 Msa0748470:CDS
TATCGCGGTGTGCGGCGGCA+CGG 0.488724 5_2:+1733019 Msa0748470:CDS
ACATGAAAAGCATAGTGTAT+TGG 0.488827 5_2:-1730981 None:intergenic
AGGCGTATTTAATCGAAGAT+TGG 0.490077 5_2:+1733334 Msa0748470:exon
ATGTCTTCAGTCCAGTGACC+TGG 0.491830 5_2:-1731541 None:intergenic
AATTGAGACAACCAAAATGT+TGG 0.493584 5_2:-1732890 None:intergenic
ATTGAGACAACCAAAATGTT+GGG 0.494828 5_2:-1732889 None:intergenic
TTCTGTACATCCTCTACCTT+AGG 0.496880 5_2:-1733196 None:intergenic
AAACTTGGCTTATATGCTGC+AGG 0.498720 5_2:-1733578 None:intergenic
GATAGGTATAAAACATGTGC+TGG 0.500269 5_2:+1733605 Msa0748470:three_prime_UTR
GGAACTGGATTCACTACTCT+TGG 0.502345 5_2:+1731631 Msa0748470:CDS
ATATAATAAATCCAGGTCAC+TGG 0.503119 5_2:+1731530 Msa0748470:CDS
ATAAGCCAAGTTTATTGGAT+AGG 0.503163 5_2:+1733588 Msa0748470:three_prime_UTR
GTCTCCTCATCAGCTGGCTA+AGG 0.507432 5_2:+1731699 Msa0748470:CDS
ACCTTCCAGCAGAAACATAT+CGG 0.509798 5_2:-1731804 None:intergenic
ATCCATTGGTGTTTCTCTCA+AGG 0.513270 5_2:+1733227 Msa0748470:CDS
CTCCGGTCATACAAATCAGC+AGG 0.515409 5_2:-1731583 None:intergenic
CTCAATTCTTTGCAGACATG+TGG 0.515450 5_2:+1732906 Msa0748470:CDS
AGCAATACCTCAGTGGTGAA+TGG 0.518290 5_2:+1731007 Msa0748470:five_prime_UTR
TGATCAGTCTCCTCATCAGC+TGG 0.520456 5_2:+1731693 Msa0748470:CDS
TACATGTGAGTGGTGCTGAT+TGG 0.522534 5_2:-1731053 None:intergenic
TCTGATGATTGATGTTCTCA+AGG 0.524510 5_2:+1733396 Msa0748470:three_prime_UTR
TAAAGACCAAATTGTTCCAA+AGG 0.528009 5_2:+1733309 Msa0748470:CDS
AGCCTGCTGATTTGTATGAC+CGG 0.529953 5_2:+1731581 Msa0748470:CDS
AACTGAAATGGAAAATGGTA+AGG 0.530261 5_2:-1731131 None:intergenic
GCTGGCTAAGGCTAAGAAGA+AGG 0.533762 5_2:+1731711 Msa0748470:CDS
TATGATCATATAATAAATCC+AGG 0.542176 5_2:+1731523 Msa0748470:CDS
AAAGACCAAATTGTTCCAAA+GGG 0.542862 5_2:+1733310 Msa0748470:CDS
ACCGATATGTTTCTGCTGGA+AGG 0.544245 5_2:+1731803 Msa0748470:CDS
TCCATTTCCAACTGATTATG+CGG 0.544265 5_2:+1731780 Msa0748470:CDS
CATGTGGATGCTCTTCCCTA+AGG 0.545532 5_2:+1732922 Msa0748470:CDS
AAAATTTGTGAAGATATGTC+TGG 0.548237 5_2:+1730893 Msa0748470:five_prime_UTR
CACCACTCACATGTATTATG+TGG 0.551164 5_2:+1731061 Msa0748470:five_prime_UTR
ATGCGAGTTGTGGATGTTGG+AGG 0.558982 5_2:+1731607 Msa0748470:CDS
TGGAACTAGTACATAGTAAG+TGG 0.561824 5_2:-1733272 None:intergenic
GTAGCTTGGTCCTAAGGTAG+AGG 0.563615 5_2:+1733186 Msa0748470:intron
ACTAAGCATTAAGGAGGCCA+TGG 0.563703 5_2:-1731263 None:intergenic
AGGAGGAAGAGTATATTGAA+TGG 0.563879 5_2:+1732942 Msa0748470:CDS
GATGCAGCGTCTCATCCGCA+AGG 0.564190 5_2:+1731428 Msa0748470:CDS
ATGAATCTAGGCTGAGAAGA+AGG 0.567539 5_2:-1731451 None:intergenic
TACTAGTTCCAATTTACATG+TGG 0.569755 5_2:+1733284 Msa0748470:CDS
CAACAAATTAACATTATGGA+AGG 0.575099 5_2:-1733453 None:intergenic
GAGGCACAGCTAAGGAGTTG+TGG 0.577245 5_2:-1730929 None:intergenic
AGAATGCGAGTTGTGGATGT+TGG 0.578151 5_2:+1731604 Msa0748470:CDS
ACAGAAGCCTGTAAATCCAT+TGG 0.579520 5_2:+1733213 Msa0748470:CDS
CTCACAGAACCTAATCCAGA+TGG 0.579852 5_2:-1731322 None:intergenic
TTAGCCTTAGCCAGCTGATG+AGG 0.582379 5_2:-1731703 None:intergenic
TGTATTCTATAGTACCTGAA+GGG 0.582741 5_2:-1733095 None:intergenic
TTAATACTAAGATTCTTCCA+AGG 0.583577 5_2:-1731229 None:intergenic
CAAAATGGTATCGCGGTGTG+CGG 0.584931 5_2:+1733011 Msa0748470:CDS
TGGAGAATCAAGTAAAGTTG+GGG 0.588040 5_2:+1733354 Msa0748470:three_prime_UTR
AATGGTATCGCGGTGTGCGG+CGG 0.590801 5_2:+1733014 Msa0748470:CDS
GAATCAAGTAAAGTTGGGGT+AGG 0.591713 5_2:+1733358 Msa0748470:three_prime_UTR
TATAGAGTTCTGAAAATAGG+AGG 0.592372 5_2:+1732839 Msa0748470:CDS
TATGCTGCAATATAACTAAG+TGG 0.595980 5_2:-1731091 None:intergenic
TATCGGTCCGCATAATCAGT+TGG 0.596748 5_2:-1731787 None:intergenic
TATTAAGTTCTACAACTCCA+TGG 0.596798 5_2:+1731246 Msa0748470:exon
AATACAGTCGTATTTAGATG+TGG 0.605074 5_2:-1733738 None:intergenic
TGTGGTCAAACATTGACTCA+TGG 0.611013 5_2:-1733720 None:intergenic
CGAGTTGTGGATGTTGGAGG+AGG 0.623443 5_2:+1731610 Msa0748470:CDS
AGCACCACTAAGCATTAAGG+AGG 0.625927 5_2:-1731269 None:intergenic
TGACCGGAGAATGCGAGTTG+TGG 0.630299 5_2:+1731597 Msa0748470:CDS
TGACAGAACAACCCATGATG+AGG 0.635531 5_2:-1733042 None:intergenic
GTGGATGCTCTTCCCTAAGG+AGG 0.637523 5_2:+1732925 Msa0748470:CDS
TCATAGAAATGAGACATGGA+TGG 0.640099 5_2:-1731166 None:intergenic
GCTTCTTTAATGCCACGCTG+TGG 0.647758 5_2:-1732815 None:intergenic
AGCCTTGAGAGAAACACCAA+TGG 0.656851 5_2:-1733229 None:intergenic
GTATTCTATAGTACCTGAAG+GGG 0.660431 5_2:-1733094 None:intergenic
AGGCTGAGAAGAAGGCCTTG+CGG 0.675664 5_2:-1731443 None:intergenic
ATAGGTCCAAAATGGTATCG+CGG 0.700687 5_2:+1733004 Msa0748470:CDS
ATGTGATAGCAATACCTCAG+TGG 0.708177 5_2:+1731000 Msa0748470:five_prime_UTR
TATATCATAGAAATGAGACA+TGG 0.715108 5_2:-1731170 None:intergenic
TGTTGTTCCATTCACCACTG+AGG 0.726264 5_2:-1731014 None:intergenic
TACTGGCCTGATCCACAGCG+TGG 0.734098 5_2:+1732803 Msa0748470:CDS
CACCACATAATACATGTGAG+TGG 0.746020 5_2:-1731063 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTGGATTTTTCTATTTTT+TGG - chr5_2:1730967-1730986 None:intergenic 15.0%
!!! TTATTTTAAGTTAAAAGACT+AGG + chr5_2:1731912-1731931 Msa0748470:intron 15.0%
!!! ATCTTTTTGTTTTACTTAAT+AGG + chr5_2:1732102-1732121 Msa0748470:intron 15.0%
!! TTATAAAATGTCATTCAAAA+TGG + chr5_2:1732202-1732221 Msa0748470:intron 15.0%
!!! GATTTACTTTTCAAAATTAA+TGG + chr5_2:1733418-1733437 Msa0748470:three_prime_UTR 15.0%
!! TTACTTAAATTTAAGTGTTA+CGG + chr5_2:1733823-1733842 Msa0748470:three_prime_UTR 15.0%
!!! TTTTTGGTACATTTTATTAG+AGG - chr5_2:1730951-1730970 None:intergenic 20.0%
!!! TATAAAAGTGTTAATTTCCT+TGG + chr5_2:1731212-1731231 Msa0748470:five_prime_UTR 20.0%
!! TATGATCATATAATAAATCC+AGG + chr5_2:1731523-1731542 Msa0748470:CDS 20.0%
!! AAAGAATGTAAGATAATTGA+AGG + chr5_2:1731742-1731761 Msa0748470:CDS 20.0%
!!! AAATGAAAAGACATCTTTTA+TGG + chr5_2:1732072-1732091 Msa0748470:intron 20.0%
!!! GTTTTACTTAATAGGAAAAT+TGG + chr5_2:1732110-1732129 Msa0748470:intron 20.0%
!!! CTAATTTGTCTATGAAATTT+AGG + chr5_2:1732337-1732356 Msa0748470:intron 20.0%
!! AAATGAGTAAATAGACAAAT+TGG - chr5_2:1732634-1732653 None:intergenic 20.0%
!! TTATGTTACATTGATACATA+AGG - chr5_2:1732759-1732778 None:intergenic 20.0%
!! GTATATTGAATGGTTTAAAA+AGG + chr5_2:1732952-1732971 Msa0748470:CDS 20.0%
!! AATATTTAAAGAACTGTAGA+AGG - chr5_2:1733121-1733140 None:intergenic 20.0%
!! ATGTCAACAAATTAACATTA+TGG - chr5_2:1733460-1733479 None:intergenic 20.0%
!! TTTGAACATTGTTTATTTGA+AGG + chr5_2:1733539-1733558 Msa0748470:three_prime_UTR 20.0%
! AAAATTTGTGAAGATATGTC+TGG + chr5_2:1730893-1730912 Msa0748470:five_prime_UTR 25.0%
! TATATCATAGAAATGAGACA+TGG - chr5_2:1731173-1731192 None:intergenic 25.0%
! TTAATACTAAGATTCTTCCA+AGG - chr5_2:1731232-1731251 None:intergenic 25.0%
! AGAAATAATGCAGTTTCATA+TGG + chr5_2:1731373-1731392 Msa0748470:CDS 25.0%
! TGTATATACTGCAAGATTTA+TGG + chr5_2:1731874-1731893 Msa0748470:intron 25.0%
!! ATATTTTGTCCTATGATCAT+AGG - chr5_2:1732047-1732066 None:intergenic 25.0%
!! CAATTTTGAATGACATATCA+TGG - chr5_2:1732267-1732286 None:intergenic 25.0%
! CATGATATGTCATTCAAAAT+TGG + chr5_2:1732265-1732284 Msa0748470:intron 25.0%
! AGGTCAACTAAAGAAAAAAA+TGG + chr5_2:1732357-1732376 Msa0748470:intron 25.0%
!! TCTATTTACTCATTTTCTAG+AGG + chr5_2:1732639-1732658 Msa0748470:intron 25.0%
! CAACAAATTAACATTATGGA+AGG - chr5_2:1733456-1733475 None:intergenic 25.0%
!!! GTTAATTTGTTGACATGTTT+TGG + chr5_2:1733464-1733483 Msa0748470:three_prime_UTR 25.0%
! GAATCGTAGTAAAATTTAAG+AGG - chr5_2:1733502-1733521 None:intergenic 25.0%
!!! ATTTTACTACGATTCTGAAA+TGG + chr5_2:1733507-1733526 Msa0748470:three_prime_UTR 25.0%
! TTATACCTATCCAATAAACT+TGG - chr5_2:1733596-1733615 None:intergenic 25.0%
! ACATGAAAAGCATAGTGTAT+TGG - chr5_2:1730984-1731003 None:intergenic 30.0%
TATGCTGCAATATAACTAAG+TGG - chr5_2:1731094-1731113 None:intergenic 30.0%
TGGTAAGGTACATAATGTTA+TGG - chr5_2:1731119-1731138 None:intergenic 30.0%
AACTGAAATGGAAAATGGTA+AGG - chr5_2:1731134-1731153 None:intergenic 30.0%
TTTGCAACTGAAATGGAAAA+TGG - chr5_2:1731139-1731158 None:intergenic 30.0%
! TTTGGAATTTGCAACTGAAA+TGG - chr5_2:1731146-1731165 None:intergenic 30.0%
TATTAAGTTCTACAACTCCA+TGG + chr5_2:1731246-1731265 Msa0748470:exon 30.0%
ATTAATAGCATAGTTCCATC+TGG + chr5_2:1731307-1731326 Msa0748470:CDS 30.0%
AAAATGCTTCTTTCTTGTGT+TGG - chr5_2:1731477-1731496 None:intergenic 30.0%
!!! AACACAAGAAAGAAGCATTT+TGG + chr5_2:1731476-1731495 Msa0748470:CDS 30.0%
!!! AAGAAGCATTTTGGTTTTAC+AGG + chr5_2:1731485-1731504 Msa0748470:CDS 30.0%
ATATAATAAATCCAGGTCAC+TGG + chr5_2:1731530-1731549 Msa0748470:CDS 30.0%
TCTTGCAGTATATACAATGA+AGG - chr5_2:1731870-1731889 None:intergenic 30.0%
!! TTGACTTGTAAAGCTCAAAT+GGG - chr5_2:1732005-1732024 None:intergenic 30.0%
!! TTTGACTTGTAAAGCTCAAA+TGG - chr5_2:1732006-1732025 None:intergenic 30.0%
AATCTTAGTCCTATGATCAT+AGG + chr5_2:1732035-1732054 Msa0748470:intron 30.0%
!! TGACAAATTAGTCTTTAGTG+TGG + chr5_2:1732412-1732431 Msa0748470:intron 30.0%
TAGCTGTAAAAGCTAACATA+TGG + chr5_2:1732515-1732534 Msa0748470:intron 30.0%
! ACCGTCACTTAACAATTTTA+GGG + chr5_2:1732547-1732566 Msa0748470:intron 30.0%
TCCCTAAAATTGTTAAGTGA+CGG - chr5_2:1732551-1732570 None:intergenic 30.0%
!! ACTCATTTTCTAGAGGAAAA+TGG + chr5_2:1732646-1732665 Msa0748470:intron 30.0%
! TGTTGTTCAGTATTGAATAC+TGG + chr5_2:1732786-1732805 Msa0748470:intron 30.0%
!! GCATATAGAGTTCTGAAAAT+AGG + chr5_2:1732836-1732855 Msa0748470:CDS 30.0%
!! TATAGAGTTCTGAAAATAGG+AGG + chr5_2:1732839-1732858 Msa0748470:CDS 30.0%
ATTGAGACAACCAAAATGTT+GGG - chr5_2:1732892-1732911 None:intergenic 30.0%
AATTGAGACAACCAAAATGT+TGG - chr5_2:1732893-1732912 None:intergenic 30.0%
ATTGAATGGTTTAAAAAGGC+TGG + chr5_2:1732956-1732975 Msa0748470:CDS 30.0%
TGAAAAGAATAGGTCCAAAA+TGG + chr5_2:1732996-1733015 Msa0748470:CDS 30.0%
TGTATTCTATAGTACCTGAA+GGG - chr5_2:1733098-1733117 None:intergenic 30.0%
TACTAGTTCCAATTTACATG+TGG + chr5_2:1733284-1733303 Msa0748470:CDS 30.0%
TCTTTAAGCCACATGTAAAT+TGG - chr5_2:1733295-1733314 None:intergenic 30.0%
TAAAGACCAAATTGTTCCAA+AGG + chr5_2:1733309-1733328 Msa0748470:CDS 30.0%
AAAGACCAAATTGTTCCAAA+GGG + chr5_2:1733310-1733329 Msa0748470:CDS 30.0%
ATTGGAGAATCAAGTAAAGT+TGG + chr5_2:1733352-1733371 Msa0748470:three_prime_UTR 30.0%
TTGGAGAATCAAGTAAAGTT+GGG + chr5_2:1733353-1733372 Msa0748470:three_prime_UTR 30.0%
! TGTTTATTTGAAGGTTAGTC+AGG + chr5_2:1733548-1733567 Msa0748470:three_prime_UTR 30.0%
AGCATATAAGCCAAGTTTAT+TGG + chr5_2:1733583-1733602 Msa0748470:three_prime_UTR 30.0%
ATAAGCCAAGTTTATTGGAT+AGG + chr5_2:1733588-1733607 Msa0748470:three_prime_UTR 30.0%
AATACAGTCGTATTTAGATG+TGG - chr5_2:1733741-1733760 None:intergenic 30.0%
TACCTGAAAAAAAACTCACA+TGG - chr5_2:1733781-1733800 None:intergenic 30.0%
!! TTTTATTAGAGGCACAGCTA+AGG - chr5_2:1730940-1730959 None:intergenic 35.0%
TCATAGAAATGAGACATGGA+TGG - chr5_2:1731169-1731188 None:intergenic 35.0%
TTCTTGTGTTGGATGAATCT+AGG - chr5_2:1731466-1731485 None:intergenic 35.0%
TCCATTTCCAACTGATTATG+CGG + chr5_2:1731780-1731799 Msa0748470:CDS 35.0%
AAGACTAGGTATGTGTTACA+TGG + chr5_2:1731926-1731945 Msa0748470:intron 35.0%
! ACGGTTTGGACTCAAAATTA+AGG + chr5_2:1731950-1731969 Msa0748470:intron 35.0%
TTGGACTCAAAATTAAGGCA+TGG + chr5_2:1731955-1731974 Msa0748470:intron 35.0%
ACTCAAAATTAAGGCATGGT+TGG + chr5_2:1731959-1731978 Msa0748470:intron 35.0%
! AGTCCATCAATTTTGCGAAT+TGG + chr5_2:1732162-1732181 Msa0748470:intron 35.0%
TTGCCAATTCGCAAAATTGA+TGG - chr5_2:1732168-1732187 None:intergenic 35.0%
! TAGTGAGTTGACATTGATGT+GGG - chr5_2:1732313-1732332 None:intergenic 35.0%
! TTAGTGAGTTGACATTGATG+TGG - chr5_2:1732314-1732333 None:intergenic 35.0%
ACATCAATGTCAACTCACTA+AGG + chr5_2:1732313-1732332 Msa0748470:intron 35.0%
!! CAAATTAGTCTTTAGTGTGG+TGG + chr5_2:1732415-1732434 Msa0748470:intron 35.0%
! GACCGTCACTTAACAATTTT+AGG + chr5_2:1732546-1732565 Msa0748470:intron 35.0%
AACCAAAATGTTGGGTATAC+AGG - chr5_2:1732884-1732903 None:intergenic 35.0%
CAATATACTCTTCCTCCTTA+GGG - chr5_2:1732940-1732959 None:intergenic 35.0%
TCAATATACTCTTCCTCCTT+AGG - chr5_2:1732941-1732960 None:intergenic 35.0%
! AGGAGGAAGAGTATATTGAA+TGG + chr5_2:1732942-1732961 Msa0748470:CDS 35.0%
GATGTCAAGCTGAAAAGAAT+AGG + chr5_2:1732986-1733005 Msa0748470:CDS 35.0%
GTATTCTATAGTACCTGAAG+GGG - chr5_2:1733097-1733116 None:intergenic 35.0%
GTGTATTCTATAGTACCTGA+AGG - chr5_2:1733099-1733118 None:intergenic 35.0%
ATGCATGTCTTTATGTAGCT+TGG + chr5_2:1733172-1733191 Msa0748470:intron 35.0%
! AGAAACACCAATGGATTTAC+AGG - chr5_2:1733223-1733242 None:intergenic 35.0%
TGGAACTAGTACATAGTAAG+TGG - chr5_2:1733275-1733294 None:intergenic 35.0%
AGGCGTATTTAATCGAAGAT+TGG + chr5_2:1733334-1733353 Msa0748470:exon 35.0%
TGGAGAATCAAGTAAAGTTG+GGG + chr5_2:1733354-1733373 Msa0748470:three_prime_UTR 35.0%
TCTGATGATTGATGTTCTCA+AGG + chr5_2:1733396-1733415 Msa0748470:three_prime_UTR 35.0%
ATTATGGAAGGCAAAGTTCA+TGG - chr5_2:1733444-1733463 None:intergenic 35.0%
GATAGGTATAAAACATGTGC+TGG + chr5_2:1733605-1733624 Msa0748470:three_prime_UTR 35.0%
CAGACATGAAATCAGAAATC+AGG - chr5_2:1733635-1733654 None:intergenic 35.0%
CTGATTTCTGATTTCATGTC+TGG + chr5_2:1733633-1733652 Msa0748470:three_prime_UTR 35.0%
!!! GACCATGTGAGTTTTTTTTC+AGG + chr5_2:1733776-1733795 Msa0748470:three_prime_UTR 35.0%
GCTAAGGAGTTGTGGAATAT+GGG - chr5_2:1730924-1730943 None:intergenic 40.0%
AGCTAAGGAGTTGTGGAATA+TGG - chr5_2:1730925-1730944 None:intergenic 40.0%
ATGTGATAGCAATACCTCAG+TGG + chr5_2:1731000-1731019 Msa0748470:five_prime_UTR 40.0%
CACCACTCACATGTATTATG+TGG + chr5_2:1731061-1731080 Msa0748470:five_prime_UTR 40.0%
CACCACATAATACATGTGAG+TGG - chr5_2:1731066-1731085 None:intergenic 40.0%
GAAATGAGACATGGATGGTT+TGG - chr5_2:1731164-1731183 None:intergenic 40.0%
TTCAGCACCACTAAGCATTA+AGG - chr5_2:1731275-1731294 None:intergenic 40.0%
AGCATAGTTCCATCTGGATT+AGG + chr5_2:1731313-1731332 Msa0748470:CDS 40.0%
ATGAATCTAGGCTGAGAAGA+AGG - chr5_2:1731454-1731473 None:intergenic 40.0%
TCCGCATAATCAGTTGGAAA+TGG - chr5_2:1731784-1731803 None:intergenic 40.0%
ACCTTCCAGCAGAAACATAT+CGG - chr5_2:1731807-1731826 None:intergenic 40.0%
TAGGTATGTGTTACATGGCA+CGG + chr5_2:1731931-1731950 Msa0748470:intron 40.0%
TGATTCCATATCATGGCCAT+TGG - chr5_2:1732441-1732460 None:intergenic 40.0%
ATGGCCATGATATGGAATCA+AGG + chr5_2:1732441-1732460 Msa0748470:intron 40.0%
TCCACCTTGATTCCATATCA+TGG - chr5_2:1732448-1732467 None:intergenic 40.0%
ATGATATGGAATCAAGGTGG+AGG + chr5_2:1732447-1732466 Msa0748470:intron 40.0%
! GTCCTGTATACCCAACATTT+TGG + chr5_2:1732879-1732898 Msa0748470:CDS 40.0%
CTCAATTCTTTGCAGACATG+TGG + chr5_2:1732906-1732925 Msa0748470:CDS 40.0%
ATAGGTCCAAAATGGTATCG+CGG + chr5_2:1733004-1733023 Msa0748470:CDS 40.0%
! ACTGGTGTCAAACCTTTATC+AGG + chr5_2:1733064-1733083 Msa0748470:CDS 40.0%
CTTTATGTAGCTTGGTCCTA+AGG + chr5_2:1733180-1733199 Msa0748470:intron 40.0%
TTCTGTACATCCTCTACCTT+AGG - chr5_2:1733199-1733218 None:intergenic 40.0%
ACAGAAGCCTGTAAATCCAT+TGG + chr5_2:1733213-1733232 Msa0748470:CDS 40.0%
! ATCCATTGGTGTTTCTCTCA+AGG + chr5_2:1733227-1733246 Msa0748470:CDS 40.0%
TTTCTCTCAAGGCTCATTCT+TGG + chr5_2:1733238-1733257 Msa0748470:CDS 40.0%
GAATCAAGTAAAGTTGGGGT+AGG + chr5_2:1733358-1733377 Msa0748470:three_prime_UTR 40.0%
AAACTTGGCTTATATGCTGC+AGG - chr5_2:1733581-1733600 None:intergenic 40.0%
!! TGTGGTCAAACATTGACTCA+TGG - chr5_2:1733723-1733742 None:intergenic 40.0%
AGCAATACCTCAGTGGTGAA+TGG + chr5_2:1731007-1731026 Msa0748470:five_prime_UTR 45.0%
TGTTGTTCCATTCACCACTG+AGG - chr5_2:1731017-1731036 None:intergenic 45.0%
!! TACATGTGAGTGGTGCTGAT+TGG - chr5_2:1731056-1731075 None:intergenic 45.0%
ACTAAGCATTAAGGAGGCCA+TGG - chr5_2:1731266-1731285 None:intergenic 45.0%
ATGGCCTCCTTAATGCTTAG+TGG + chr5_2:1731265-1731284 Msa0748470:CDS 45.0%
AGCACCACTAAGCATTAAGG+AGG - chr5_2:1731272-1731291 None:intergenic 45.0%
CTCACAGAACCTAATCCAGA+TGG - chr5_2:1731325-1731344 None:intergenic 45.0%
!! AGCCTGCTGATTTGTATGAC+CGG + chr5_2:1731581-1731600 Msa0748470:CDS 45.0%
AGAATGCGAGTTGTGGATGT+TGG + chr5_2:1731604-1731623 Msa0748470:CDS 45.0%
GGAACTGGATTCACTACTCT+TGG + chr5_2:1731631-1731650 Msa0748470:CDS 45.0%
TATCGGTCCGCATAATCAGT+TGG - chr5_2:1731790-1731809 None:intergenic 45.0%
! ACCGATATGTTTCTGCTGGA+AGG + chr5_2:1731803-1731822 Msa0748470:CDS 45.0%
ATGTGTTACATGGCACGGTT+TGG + chr5_2:1731936-1731955 Msa0748470:intron 45.0%
TACTGCTAGAGACTATGACG+TGG + chr5_2:1732241-1732260 Msa0748470:intron 45.0%
GCCATGATATGGAATCAAGG+TGG + chr5_2:1732444-1732463 Msa0748470:intron 45.0%
TGACACCTCCACCAAATATG+TGG - chr5_2:1732483-1732502 None:intergenic 45.0%
TGACAGAACAACCCATGATG+AGG - chr5_2:1733045-1733064 None:intergenic 45.0%
! ATCATGGGTTGTTCTGTCAC+TGG + chr5_2:1733046-1733065 Msa0748470:CDS 45.0%
AGCCTTGAGAGAAACACCAA+TGG - chr5_2:1733232-1733251 None:intergenic 45.0%
ACCAAATTGTTCCAAAGGGC+AGG + chr5_2:1733314-1733333 Msa0748470:CDS 45.0%
GATTAAATACGCCTGCCCTT+TGG - chr5_2:1733328-1733347 None:intergenic 45.0%
ATGTCTTCAGTCCAGTGACC+TGG - chr5_2:1731544-1731563 None:intergenic 50.0%
CTCCGGTCATACAAATCAGC+AGG - chr5_2:1731586-1731605 None:intergenic 50.0%
CATCCACAACTCGCATTCTC+CGG - chr5_2:1731603-1731622 None:intergenic 50.0%
ATGCGAGTTGTGGATGTTGG+AGG + chr5_2:1731607-1731626 Msa0748470:CDS 50.0%
TGATCAGTCTCCTCATCAGC+TGG + chr5_2:1731693-1731712 Msa0748470:CDS 50.0%
!! TTAGCCTTAGCCAGCTGATG+AGG - chr5_2:1731706-1731725 None:intergenic 50.0%
GCTGGCTAAGGCTAAGAAGA+AGG + chr5_2:1731711-1731730 Msa0748470:CDS 50.0%
GTCTTTAGTGTGGTGGCCAA+TGG + chr5_2:1732422-1732441 Msa0748470:intron 50.0%
ATGGAATCAAGGTGGAGGAC+AGG + chr5_2:1732452-1732471 Msa0748470:intron 50.0%
GACAGGAGGAGCCACATATT+TGG + chr5_2:1732469-1732488 Msa0748470:intron 50.0%
AGGAGGAGCCACATATTTGG+TGG + chr5_2:1732472-1732491 Msa0748470:intron 50.0%
! AGGAGCCACATATTTGGTGG+AGG + chr5_2:1732475-1732494 Msa0748470:intron 50.0%
TTAATGCCACGCTGTGGATC+AGG - chr5_2:1732812-1732831 None:intergenic 50.0%
GCTTCTTTAATGCCACGCTG+TGG - chr5_2:1732818-1732837 None:intergenic 50.0%
GGAGGCAAAGCGTGCATTAT+AGG + chr5_2:1732857-1732876 Msa0748470:CDS 50.0%
CATGTGGATGCTCTTCCCTA+AGG + chr5_2:1732922-1732941 Msa0748470:CDS 50.0%
CAAAATGGTATCGCGGTGTG+CGG + chr5_2:1733011-1733030 Msa0748470:CDS 50.0%
GTAGCTTGGTCCTAAGGTAG+AGG + chr5_2:1733186-1733205 Msa0748470:intron 50.0%
!! GCCTGCCCTTTGGAACAATT+TGG - chr5_2:1733318-1733337 None:intergenic 50.0%
GAGGCACAGCTAAGGAGTTG+TGG - chr5_2:1730932-1730951 None:intergenic 55.0%
AGGCTGAGAAGAAGGCCTTG+CGG - chr5_2:1731446-1731465 None:intergenic 55.0%
TGACCGGAGAATGCGAGTTG+TGG + chr5_2:1731597-1731616 Msa0748470:CDS 55.0%
CGAGTTGTGGATGTTGGAGG+AGG + chr5_2:1731610-1731629 Msa0748470:CDS 55.0%
GTGGATGTTGGAGGAGGAAC+TGG + chr5_2:1731616-1731635 Msa0748470:CDS 55.0%
GTCTCCTCATCAGCTGGCTA+AGG + chr5_2:1731699-1731718 Msa0748470:CDS 55.0%
! GCGGACCGATATGTTTCTGC+TGG + chr5_2:1731799-1731818 Msa0748470:CDS 55.0%
GGTGGCCAATGGCCATGATA+TGG + chr5_2:1732433-1732452 Msa0748470:intron 55.0%
GAATCAAGGTGGAGGACAGG+AGG + chr5_2:1732455-1732474 Msa0748470:intron 55.0%
GTGGATGCTCTTCCCTAAGG+AGG + chr5_2:1732925-1732944 Msa0748470:CDS 55.0%
! CGCACACCGCGATACCATTT+TGG - chr5_2:1733013-1733032 None:intergenic 55.0%
AGGGGAGAGTCGCCTGATAA+AGG - chr5_2:1733079-1733098 None:intergenic 55.0%
GATGCAGCGTCTCATCCGCA+AGG + chr5_2:1731428-1731447 Msa0748470:CDS 60.0%
! TACTGGCCTGATCCACAGCG+TGG + chr5_2:1732803-1732822 Msa0748470:CDS 60.0%
AATGGTATCGCGGTGTGCGG+CGG + chr5_2:1733014-1733033 Msa0748470:CDS 60.0%
ATCAGGCGACTCTCCCCTTC+AGG + chr5_2:1733081-1733100 Msa0748470:CDS 60.0%
TATCGCGGTGTGCGGCGGCA+CGG + chr5_2:1733019-1733038 Msa0748470:CDS 70.0%
CGGCGGCACGGCCTCATCAT+GGG + chr5_2:1733031-1733050 Msa0748470:CDS 70.0%
GCGGCGGCACGGCCTCATCA+TGG + chr5_2:1733030-1733049 Msa0748470:CDS 75.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 1730886 1733862 1730886 ID=Msa0748470;Name=Msa0748470
chr5_2 mRNA 1730886 1733862 1730886 ID=Msa0748470-mRNA-1;Parent=Msa0748470;Name=Msa0748470-mRNA-1;_AED=0.02;_eAED=0.02;_QI=379|1|1|1|1|1|3|517|340
chr5_2 exon 1730886 1731824 1730886 ID=Msa0748470-mRNA-1:exon:494;Parent=Msa0748470-mRNA-1
chr5_2 exon 1732796 1733102 1732796 ID=Msa0748470-mRNA-1:exon:495;Parent=Msa0748470-mRNA-1
chr5_2 exon 1733190 1733862 1733190 ID=Msa0748470-mRNA-1:exon:496;Parent=Msa0748470-mRNA-1
chr5_2 five_prime_UTR 1730886 1731264 1730886 ID=Msa0748470-mRNA-1:five_prime_utr;Parent=Msa0748470-mRNA-1
chr5_2 CDS 1731265 1731824 1731265 ID=Msa0748470-mRNA-1:cds;Parent=Msa0748470-mRNA-1
chr5_2 CDS 1732796 1733102 1732796 ID=Msa0748470-mRNA-1:cds;Parent=Msa0748470-mRNA-1
chr5_2 CDS 1733190 1733345 1733190 ID=Msa0748470-mRNA-1:cds;Parent=Msa0748470-mRNA-1
chr5_2 three_prime_UTR 1733346 1733862 1733346 ID=Msa0748470-mRNA-1:three_prime_utr;Parent=Msa0748470-mRNA-1
Gene Sequence

>Msa0748470

ATGGCCTCCTTAATGCTTAGTGGTGCTGAAAATACAAAGCTTATTAATAGCATAGTTCCATCTGGATTAGGTTCTGTGAGTCTTAACTTTCACAAGAAGTGTTTCATCAGAAATAATGCAGTTTCATATGGTAACAAATACAGTGCTAGAAACTTGACAGCGCGATGCAGCGTCTCATCCGCAAGGCCTTCTTCTCAGCCTAGATTCATCCAACACAAGAAAGAAGCATTTTGGTTTTACAGGTTTTTGTCAATTGTGTATGATCATATAATAAATCCAGGTCACTGGACTGAAGACATGAGAGATGATGCACTTGAGCCTGCTGATTTGTATGACCGGAGAATGCGAGTTGTGGATGTTGGAGGAGGAACTGGATTCACTACTCTTGGTATAGTGAAGCATGTTGATGCTAAAAATGTTACAATTCTTGATCAGTCTCCTCATCAGCTGGCTAAGGCTAAGAAGAAGGAAGCATTGAAAGAATGTAAGATAATTGAAGGTGATGCAGAAGATCTTCCATTTCCAACTGATTATGCGGACCGATATGTTTCTGCTGGAAGTATTGAATACTGGCCTGATCCACAGCGTGGCATTAAAGAAGCATATAGAGTTCTGAAAATAGGAGGCAAAGCGTGCATTATAGGTCCTGTATACCCAACATTTTGGTTGTCTCAATTCTTTGCAGACATGTGGATGCTCTTCCCTAAGGAGGAAGAGTATATTGAATGGTTTAAAAAGGCTGGTTTCAAAGATGTCAAGCTGAAAAGAATAGGTCCAAAATGGTATCGCGGTGTGCGGCGGCACGGCCTCATCATGGGTTGTTCTGTCACTGGTGTCAAACCTTTATCAGGCGACTCTCCCCTTCAGCTTGGTCCTAAGGTAGAGGATGTACAGAAGCCTGTAAATCCATTGGTGTTTCTCTCAAGGCTCATTCTTGGTACAATTGCAGCCACTTACTATGTACTAGTTCCAATTTACATGTGGCTTAAAGACCAAATTGTTCCAAAGGGCAGGCGTATTTAA

Protein sequence

>Msa0748470

MASLMLSGAENTKLINSIVPSGLGSVSLNFHKKCFIRNNAVSYGNKYSARNLTARCSVSSARPSSQPRFIQHKKEAFWFYRFLSIVYDHIINPGHWTEDMRDDALEPADLYDRRMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKKKEALKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACIIGPVYPTFWLSQFFADMWMLFPKEEEYIEWFKKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPLSGDSPLQLGPKVEDVQKPVNPLVFLSRLILGTIAATYYVLVPIYMWLKDQIVPKGRRI*