AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0469770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0469770 MtrunA17_Chr3g0124681 99.259 270 2 0 1 270 1 270 0.0 526
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0469770 AT1G44575.1 72.426 272 65 4 1 270 1 264 1.38e-110 320
Msa0469770 AT1G44575.3 72.426 272 65 4 1 270 1 264 1.38e-110 320
Msa0469770 AT1G44575.2 69.271 192 49 4 1 190 1 184 1.27e-61 193
Msa0469770 AT1G44575.2 71.429 49 14 0 194 242 84 132 4.65e-16 75.1

Find 88 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTGGTTCAATTTCAGTAAT+TGG 0.150098 3_3:-71759557 None:intergenic
AATTCTAGCACAATTGAATT+TGG 0.184443 3_3:+71759018 Msa0469770:CDS
AAATATTATCTTTAATAATA+AGG 0.211059 3_3:-71757394 None:intergenic
TGCATGTTAGGTCCTTTATT+TGG 0.212751 3_3:+71759410 Msa0469770:intron
GATGGTATCTTTGGAACTTC+TGG 0.221695 3_3:+71757878 Msa0469770:CDS
TTGAGTCATGTTAGTGTCTT+TGG 0.244409 3_3:-71759925 None:intergenic
AACAAACAATTCATTGGATT+TGG 0.255758 3_3:-71759438 None:intergenic
AATTACAGTGTCAAAGATTA+AGG 0.268924 3_3:+71757581 Msa0469770:CDS
TTGATTGGAGAAATTATTAC+TGG 0.283745 3_3:+71759494 Msa0469770:CDS
TTTGGAACTTCTGGAGGATT+TGG 0.286142 3_3:+71757887 Msa0469770:CDS
AAGGTTGAAGATGGTATCTT+TGG 0.291595 3_3:+71757869 Msa0469770:CDS
AGAGGCTCAGCTTCATAAAT+TGG 0.298533 3_3:-71759052 None:intergenic
CATTTGCAGGCATCAATATT+AGG 0.305704 3_3:+71758974 Msa0469770:intron
TTCATTGCTGCTTTGAATCC+TGG 0.310194 3_3:+71759605 Msa0469770:CDS
TGTTGGAAGATTGGCTCAAT+TGG 0.313349 3_3:+71759457 Msa0469770:CDS
CCATCTTCAACCTTTGGCTT+TGG 0.320599 3_3:-71757860 None:intergenic
TCTTCCAACAAACAATTCAT+TGG 0.342233 3_3:-71759444 None:intergenic
TCTCGTCTATTGTACTATAT+TGG 0.359613 3_3:-71757311 None:intergenic
GATTTGGTGAATCCAAATAA+AGG 0.360093 3_3:-71759422 None:intergenic
TGTGATAATATTTCCATTTG+AGG 0.365580 3_3:-71757283 None:intergenic
GTGGTTCAATTTCAGTAATT+GGG 0.365857 3_3:-71759556 None:intergenic
GCACAATTGAATTTGGAAAC+TGG 0.368263 3_3:+71759025 Msa0469770:CDS
TTAGATCAGCTCTTGGTCTC+AGG 0.379018 3_3:+71759191 Msa0469770:CDS
GTTACAAAAGTGCCAGTTCC+AGG 0.380949 3_3:-71759623 None:intergenic
TGAATTGTTTGTTGGAAGAT+TGG 0.385211 3_3:+71759448 Msa0469770:CDS
AAGATACCATCTTCAACCTT+TGG 0.387880 3_3:-71757866 None:intergenic
ATAAATCATAATACCTCAAA+TGG 0.391937 3_3:+71757270 Msa0469770:five_prime_UTR
AAATCCAATGAATTGTTTGT+TGG 0.392325 3_3:+71759440 Msa0469770:CDS
AAGCAGAATGAACTCTTTGT+TGG 0.396845 3_3:+71757917 Msa0469770:CDS
AGTGTCAAAGATTAAGGCCT+AGG 0.399815 3_3:+71757587 Msa0469770:CDS
TATACATTATTTAAGTAGTA+AGG 0.400009 3_3:-71759880 None:intergenic
GTTGGAAGATTGGCTCAATT+GGG 0.400071 3_3:+71759458 Msa0469770:CDS
TAGTACCTTAGCAGGGGCTT+TGG 0.417597 3_3:-71757701 None:intergenic
TGGAGAAATTATTACTGGTA+AGG 0.421923 3_3:+71759499 Msa0469770:CDS
ATCACGTACATTCACTACTT+TGG 0.425907 3_3:+71757660 Msa0469770:CDS
ATATTAGGTGAAGCATTAAC+TGG 0.440539 3_3:+71758989 Msa0469770:CDS
AAAATGAGTAGTACCTTAGC+AGG 0.443793 3_3:-71757709 None:intergenic
CACTTAGAATTTGAAGGAAG+TGG 0.453095 3_3:-71757631 None:intergenic
TTCACCTTGCTAGGAGCCAT+TGG 0.454770 3_3:+71759094 Msa0469770:CDS
GGAGTTATTCCTCCAGGAAA+AGG 0.455401 3_3:+71759166 Msa0469770:CDS
GCTGCTTTGAATCCTGGAAC+TGG 0.462882 3_3:+71759611 Msa0469770:CDS
CTAGGAGCCATTGGAGCTCT+AGG 0.483439 3_3:+71759103 Msa0469770:CDS
GCTCAGCTCAACATTGAGAC+TGG 0.484090 3_3:+71759530 Msa0469770:CDS
TATACCCTAAAATAAAATGA+AGG 0.486869 3_3:-71759788 None:intergenic
CTCAGCTCAACATTGAGACT+GGG 0.497814 3_3:+71759531 Msa0469770:CDS
GGAATAACTCCTCCAGTGTT+AGG 0.502221 3_3:-71759154 None:intergenic
AATAATAAGGTGTGTGGATG+TGG 0.504211 3_3:-71757381 None:intergenic
GGAGAAATTATTACTGGTAA+GGG 0.507917 3_3:+71759500 Msa0469770:CDS
GTTGGTCGTGTTGCTATGAT+CGG 0.516308 3_3:+71757935 Msa0469770:CDS
ACTTAGAATTTGAAGGAAGT+GGG 0.519799 3_3:-71757630 None:intergenic
GACACTGTAATTGAAGCAAA+GGG 0.525415 3_3:-71757570 None:intergenic
TGACACTGTAATTGAAGCAA+AGG 0.531256 3_3:-71757571 None:intergenic
TTGCTTGTGTTTGTGTTGTG+TGG 0.535772 3_3:-71757461 None:intergenic
ATCTTTAATAATAAGGTGTG+TGG 0.536802 3_3:-71757387 None:intergenic
TAGATCAGCTCTTGGTCTCA+GGG 0.538741 3_3:+71759192 Msa0469770:CDS
GGTGAAGCATTAACTGGCAA+AGG 0.540137 3_3:+71758995 Msa0469770:CDS
TGTAAGAAAGTATCAATGAC+AGG 0.540598 3_3:-71757351 None:intergenic
TGATACTCTAGTCTTATGTA+AGG 0.541107 3_3:+71759853 Msa0469770:three_prime_UTR
AAAGGATTTAGATCAGCTCT+TGG 0.544811 3_3:+71759184 Msa0469770:CDS
TTAAGTTATCTCTTCACTTG+AGG 0.552389 3_3:+71757204 Msa0469770:five_prime_UTR
GGTATCTTTGGAACTTCTGG+AGG 0.556616 3_3:+71757881 Msa0469770:CDS
CACTTGAGGCAGAGAAGACA+AGG 0.557153 3_3:+71757218 Msa0469770:five_prime_UTR
AGGGTCTTTCTTCAAATCCA+CGG 0.566938 3_3:-71757551 None:intergenic
CCAAAGCCAAAGGTTGAAGA+TGG 0.567917 3_3:+71757860 Msa0469770:CDS
ATACCCTAAAATAAAATGAA+GGG 0.568348 3_3:-71759787 None:intergenic
TTCTTTAAGTACAAACAAAG+TGG 0.571060 3_3:-71759677 None:intergenic
TGTCTCTAGTACTTATTCCG+TGG 0.572333 3_3:+71757534 Msa0469770:CDS
ACTGGAGGAGTTATTCCTCC+AGG 0.573363 3_3:+71759160 Msa0469770:CDS
AACAACTCTATCATCTCCAT+TGG 0.578688 3_3:+71759752 Msa0469770:three_prime_UTR
AAATGAGTAGTACCTTAGCA+GGG 0.579295 3_3:-71757708 None:intergenic
GAGCTAACATAGTATAGCAA+TGG 0.580993 3_3:+71757486 Msa0469770:exon
AGCTCCAATGGCTCCTAGCA+AGG 0.581456 3_3:-71759098 None:intergenic
AAAGACCAAAGCCCCTGCTA+AGG 0.585648 3_3:+71757696 Msa0469770:CDS
ACGGTCACCTAGAGCTCCAA+TGG 0.591758 3_3:-71759110 None:intergenic
TCAGCTCTTGGTCTCAGGGA+AGG 0.594171 3_3:+71759196 Msa0469770:CDS
AGGGACAAATGTGTAACCAA+TGG 0.597527 3_3:-71759768 None:intergenic
GCTCTTGGTCTCAGGGAAGG+AGG 0.614124 3_3:+71759199 Msa0469770:CDS
AATAAGGTGTGTGGATGTGG+TGG 0.615196 3_3:-71757378 None:intergenic
GTTGATGATGAGCCTAACAC+TGG 0.618935 3_3:+71759142 Msa0469770:CDS
ATAACATTGAACAACACTAG+TGG 0.664923 3_3:-71759575 None:intergenic
ATAGTACAATAGACGAGACG+TGG 0.669845 3_3:+71757316 Msa0469770:five_prime_UTR
AATGAGTAGTACCTTAGCAG+GGG 0.688643 3_3:-71757707 None:intergenic
TCAGCTCAACATTGAGACTG+GGG 0.690397 3_3:+71759532 Msa0469770:CDS
TAGTACAATAGACGAGACGT+GGG 0.705825 3_3:+71757317 Msa0469770:five_prime_UTR
AACGAAACATCAGAAAACCT+AGG 0.707531 3_3:-71757604 None:intergenic
ATTGGAGCTCTAGGTGACCG+TGG 0.710208 3_3:+71759112 Msa0469770:CDS
CATCATCAACAAATTTACCA+CGG 0.716251 3_3:-71759129 None:intergenic
GATGATGAGCCTAACACTGG+AGG 0.724745 3_3:+71759145 Msa0469770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACATAATTTTTAATATCAT+TGG - chr3_3:71758465-71758484 None:intergenic 10.0%
!! CTATAAAAATTAAATGTTAA+AGG - chr3_3:71758600-71758619 None:intergenic 10.0%
!!! TTTACATGTAAAAAAATTTT+GGG + chr3_3:71758626-71758645 Msa0469770:intron 10.0%
!! TTGACAAATATTAATTAATT+AGG + chr3_3:71758782-71758801 Msa0469770:intron 10.0%
!! AATATTAATTAATTAGGATT+AGG + chr3_3:71758788-71758807 Msa0469770:intron 10.0%
!!! CAATTTTAGTAATTTTATTG+AGG + chr3_3:71758503-71758522 Msa0469770:intron 15.0%
!!! CTTTACATGTAAAAAAATTT+TGG + chr3_3:71758625-71758644 Msa0469770:intron 15.0%
!!! AAAAAATTTTGGGAAAAATT+TGG + chr3_3:71758636-71758655 Msa0469770:intron 15.0%
!!! TTCAAAATGTTCTTTAAAAA+TGG + chr3_3:71758844-71758863 Msa0469770:intron 15.0%
!! TATATCATGCAAATTAAAAA+GGG + chr3_3:71758925-71758944 Msa0469770:intron 15.0%
!!! ATTTTCAAAATTATTAAGGT+TGG + chr3_3:71759359-71759378 Msa0469770:intron 15.0%
!! TATACATTATTTAAGTAGTA+AGG - chr3_3:71759883-71759902 None:intergenic 15.0%
!!! TATGAATGAACATCATTTTT+GGG - chr3_3:71757246-71757265 None:intergenic 20.0%
!!! TTATGAATGAACATCATTTT+TGG - chr3_3:71757247-71757266 None:intergenic 20.0%
!! ATAAATCATAATACCTCAAA+TGG + chr3_3:71757270-71757289 Msa0469770:five_prime_UTR 20.0%
!!! ATTGACTTAAGTAATAGTTT+AGG - chr3_3:71758189-71758208 None:intergenic 20.0%
!!! TAAAGAACATTTTGAAGTTT+TGG - chr3_3:71758840-71758859 None:intergenic 20.0%
!! GTATATCATGCAAATTAAAA+AGG + chr3_3:71758924-71758943 Msa0469770:intron 20.0%
!!! AATTTATTTTTGTGCATGTT+AGG + chr3_3:71759398-71759417 Msa0469770:intron 20.0%
!! ATACCCTAAAATAAAATGAA+GGG - chr3_3:71759790-71759809 None:intergenic 20.0%
!! TATACCCTAAAATAAAATGA+AGG - chr3_3:71759791-71759810 None:intergenic 20.0%
!!! ATGAATGAACATCATTTTTG+GGG - chr3_3:71757245-71757264 None:intergenic 25.0%
! TGTGATAATATTTCCATTTG+AGG - chr3_3:71757286-71757305 None:intergenic 25.0%
! ATCTTTAATAATAAGGTGTG+TGG - chr3_3:71757390-71757409 None:intergenic 25.0%
! AATTACAGTGTCAAAGATTA+AGG + chr3_3:71757581-71757600 Msa0469770:CDS 25.0%
! GAAAAACACTTAGAATTTGA+AGG - chr3_3:71757640-71757659 None:intergenic 25.0%
! GGTTTGATGAAATATATTTC+AGG + chr3_3:71757826-71757845 Msa0469770:intron 25.0%
! ATAATCTCGCAAATGTTTAT+AGG - chr3_3:71758120-71758139 None:intergenic 25.0%
! AAAAAAATGAACCTGTCAAA+AGG + chr3_3:71758382-71758401 Msa0469770:intron 25.0%
! AAAAAATGAACCTGTCAAAA+GGG + chr3_3:71758383-71758402 Msa0469770:intron 25.0%
!! GCTTTTCTTTAACTAACTTT+TGG - chr3_3:71758897-71758916 None:intergenic 25.0%
! AATTCTAGCACAATTGAATT+TGG + chr3_3:71759018-71759037 Msa0469770:CDS 25.0%
! AGGTGAAAATGATGAAAAAT+AGG - chr3_3:71759081-71759100 None:intergenic 25.0%
! AACAAACAATTCATTGGATT+TGG - chr3_3:71759441-71759460 None:intergenic 25.0%
! AAATCCAATGAATTGTTTGT+TGG + chr3_3:71759440-71759459 Msa0469770:CDS 25.0%
! TTGATTGGAGAAATTATTAC+TGG + chr3_3:71759494-71759513 Msa0469770:CDS 25.0%
! TTCTTTAAGTACAAACAAAG+TGG - chr3_3:71759680-71759699 None:intergenic 25.0%
!!! TTGTCCCTTCATTTTATTTT+AGG + chr3_3:71759783-71759802 Msa0469770:three_prime_UTR 25.0%
!!! TGTCCCTTCATTTTATTTTA+GGG + chr3_3:71759784-71759803 Msa0469770:three_prime_UTR 25.0%
TTAAGTTATCTCTTCACTTG+AGG + chr3_3:71757204-71757223 Msa0469770:five_prime_UTR 30.0%
TCTCGTCTATTGTACTATAT+TGG - chr3_3:71757314-71757333 None:intergenic 30.0%
!! TGTAAGAAAGTATCAATGAC+AGG - chr3_3:71757354-71757373 None:intergenic 30.0%
ACTTAGAATTTGAAGGAAGT+GGG - chr3_3:71757633-71757652 None:intergenic 30.0%
!! ATTTGAGAGCACTATGAATT+TGG + chr3_3:71757805-71757824 Msa0469770:intron 30.0%
GTAAAGTGAATATATCAGTG+AGG - chr3_3:71757983-71758002 None:intergenic 30.0%
!! GAAAATAAGACAAGTTGGTA+TGG - chr3_3:71758005-71758024 None:intergenic 30.0%
GCAATGAAAATAAGACAAGT+TGG - chr3_3:71758010-71758029 None:intergenic 30.0%
AAAAATGAACCTGTCAAAAG+GGG + chr3_3:71758384-71758403 Msa0469770:intron 30.0%
! CAACTCTAACACTTGTTAAT+TGG + chr3_3:71758553-71758572 Msa0469770:intron 30.0%
! ATATTAGGTGAAGCATTAAC+TGG + chr3_3:71758989-71759008 Msa0469770:CDS 30.0%
ATGATGAAAAATAGGAGAAG+AGG - chr3_3:71759073-71759092 None:intergenic 30.0%
CATCATCAACAAATTTACCA+CGG - chr3_3:71759132-71759151 None:intergenic 30.0%
TGTTTATAATAGTGACTAGC+AGG + chr3_3:71759324-71759343 Msa0469770:intron 30.0%
!! GATTTGGTGAATCCAAATAA+AGG - chr3_3:71759425-71759444 None:intergenic 30.0%
TCTTCCAACAAACAATTCAT+TGG - chr3_3:71759447-71759466 None:intergenic 30.0%
! TGAATTGTTTGTTGGAAGAT+TGG + chr3_3:71759448-71759467 Msa0469770:CDS 30.0%
!!! GGTTTTGTTTTCTCTTTGAT+TGG + chr3_3:71759479-71759498 Msa0469770:CDS 30.0%
TGGAGAAATTATTACTGGTA+AGG + chr3_3:71759499-71759518 Msa0469770:CDS 30.0%
GGAGAAATTATTACTGGTAA+GGG + chr3_3:71759500-71759519 Msa0469770:CDS 30.0%
GTGGTTCAATTTCAGTAATT+GGG - chr3_3:71759559-71759578 None:intergenic 30.0%
AGTGGTTCAATTTCAGTAAT+TGG - chr3_3:71759560-71759579 None:intergenic 30.0%
ATAACATTGAACAACACTAG+TGG - chr3_3:71759578-71759597 None:intergenic 30.0%
TGAAAAAAATTTAGGCTGAG+AGG + chr3_3:71759829-71759848 Msa0469770:three_prime_UTR 30.0%
!! TGATACTCTAGTCTTATGTA+AGG + chr3_3:71759853-71759872 Msa0469770:three_prime_UTR 30.0%
AATAATAAGGTGTGTGGATG+TGG - chr3_3:71757384-71757403 None:intergenic 35.0%
GAGCTAACATAGTATAGCAA+TGG + chr3_3:71757486-71757505 Msa0469770:exon 35.0%
GACACTGTAATTGAAGCAAA+GGG - chr3_3:71757573-71757592 None:intergenic 35.0%
TGACACTGTAATTGAAGCAA+AGG - chr3_3:71757574-71757593 None:intergenic 35.0%
AACGAAACATCAGAAAACCT+AGG - chr3_3:71757607-71757626 None:intergenic 35.0%
CACTTAGAATTTGAAGGAAG+TGG - chr3_3:71757634-71757653 None:intergenic 35.0%
ATCACGTACATTCACTACTT+TGG + chr3_3:71757660-71757679 Msa0469770:CDS 35.0%
AAATGAGTAGTACCTTAGCA+GGG - chr3_3:71757711-71757730 None:intergenic 35.0%
AAAATGAGTAGTACCTTAGC+AGG - chr3_3:71757712-71757731 None:intergenic 35.0%
TGTTAAAAAGCCAAAGCCAA+AGG + chr3_3:71757850-71757869 Msa0469770:CDS 35.0%
AAGATACCATCTTCAACCTT+TGG - chr3_3:71757869-71757888 None:intergenic 35.0%
AAGGTTGAAGATGGTATCTT+TGG + chr3_3:71757869-71757888 Msa0469770:CDS 35.0%
AAGCAGAATGAACTCTTTGT+TGG + chr3_3:71757917-71757936 Msa0469770:CDS 35.0%
ACAAGTGTTAGAGTTGCAAA+TGG - chr3_3:71758549-71758568 None:intergenic 35.0%
TTGAGAACATTTGACAGCAT+GGG - chr3_3:71758681-71758700 None:intergenic 35.0%
TTTGAGAACATTTGACAGCA+TGG - chr3_3:71758682-71758701 None:intergenic 35.0%
CATAACAATGCAAGTCTTCA+TGG - chr3_3:71758718-71758737 None:intergenic 35.0%
AGGGTAGATAAGTTATGTCA+CGG + chr3_3:71758944-71758963 Msa0469770:intron 35.0%
CATTTGCAGGCATCAATATT+AGG + chr3_3:71758974-71758993 Msa0469770:intron 35.0%
GCACAATTGAATTTGGAAAC+TGG + chr3_3:71759025-71759044 Msa0469770:CDS 35.0%
! TTCATCATTTTCACCTTGCT+AGG + chr3_3:71759085-71759104 Msa0469770:CDS 35.0%
AAAGGATTTAGATCAGCTCT+TGG + chr3_3:71759184-71759203 Msa0469770:CDS 35.0%
TGCATGTTAGGTCCTTTATT+TGG + chr3_3:71759410-71759429 Msa0469770:intron 35.0%
AACAACTCTATCATCTCCAT+TGG + chr3_3:71759752-71759771 Msa0469770:three_prime_UTR 35.0%
ATAGTACAATAGACGAGACG+TGG + chr3_3:71757316-71757335 Msa0469770:five_prime_UTR 40.0%
TAGTACAATAGACGAGACGT+GGG + chr3_3:71757317-71757336 Msa0469770:five_prime_UTR 40.0%
TTGCTTGTGTTTGTGTTGTG+TGG - chr3_3:71757464-71757483 None:intergenic 40.0%
TGTCTCTAGTACTTATTCCG+TGG + chr3_3:71757534-71757553 Msa0469770:CDS 40.0%
AGGGTCTTTCTTCAAATCCA+CGG - chr3_3:71757554-71757573 None:intergenic 40.0%
AGTGTCAAAGATTAAGGCCT+AGG + chr3_3:71757587-71757606 Msa0469770:CDS 40.0%
AATGAGTAGTACCTTAGCAG+GGG - chr3_3:71757710-71757729 None:intergenic 40.0%
!! GATGGTATCTTTGGAACTTC+TGG + chr3_3:71757878-71757897 Msa0469770:CDS 40.0%
! TTTGGAACTTCTGGAGGATT+TGG + chr3_3:71757887-71757906 Msa0469770:CDS 40.0%
! TGGATCCTTGACTAAGGTTT+TGG + chr3_3:71758407-71758426 Msa0469770:intron 40.0%
! GTTAGAGTTGCAAATGGACT+TGG - chr3_3:71758543-71758562 None:intergenic 40.0%
ATGGGCGGATCTAATATGTA+TGG - chr3_3:71758663-71758682 None:intergenic 40.0%
! TCACGGATTGTTTCATTTGC+AGG + chr3_3:71758961-71758980 Msa0469770:intron 40.0%
AGAGGCTCAGCTTCATAAAT+TGG - chr3_3:71759055-71759074 None:intergenic 40.0%
! GATCTAAATCCTTTTCCTGG+AGG - chr3_3:71759178-71759197 None:intergenic 40.0%
! GCTGATCTAAATCCTTTTCC+TGG - chr3_3:71759181-71759200 None:intergenic 40.0%
! TGTTGGAAGATTGGCTCAAT+TGG + chr3_3:71759457-71759476 Msa0469770:CDS 40.0%
! GTTGGAAGATTGGCTCAATT+GGG + chr3_3:71759458-71759477 Msa0469770:CDS 40.0%
!! TTCATTGCTGCTTTGAATCC+TGG + chr3_3:71759605-71759624 Msa0469770:CDS 40.0%
AGGGACAAATGTGTAACCAA+TGG - chr3_3:71759771-71759790 None:intergenic 40.0%
AATAAGGTGTGTGGATGTGG+TGG - chr3_3:71757381-71757400 None:intergenic 45.0%
! CCATCTTCAACCTTTGGCTT+TGG - chr3_3:71757863-71757882 None:intergenic 45.0%
CCAAAGCCAAAGGTTGAAGA+TGG + chr3_3:71757860-71757879 Msa0469770:CDS 45.0%
!! GGTATCTTTGGAACTTCTGG+AGG + chr3_3:71757881-71757900 Msa0469770:CDS 45.0%
! GTTGGTCGTGTTGCTATGAT+CGG + chr3_3:71757935-71757954 Msa0469770:CDS 45.0%
AATGAACCTGTCAAAAGGGG+TGG + chr3_3:71758387-71758406 Msa0469770:intron 45.0%
CCACACCAAAACCTTAGTCA+AGG - chr3_3:71758415-71758434 None:intergenic 45.0%
!! CCTTGACTAAGGTTTTGGTG+TGG + chr3_3:71758412-71758431 Msa0469770:intron 45.0%
AGAACATTTGACAGCATGGG+CGG - chr3_3:71758678-71758697 None:intergenic 45.0%
! GGTGAAGCATTAACTGGCAA+AGG + chr3_3:71758995-71759014 Msa0469770:CDS 45.0%
!! GTTGATGATGAGCCTAACAC+TGG + chr3_3:71759142-71759161 Msa0469770:CDS 45.0%
GGAATAACTCCTCCAGTGTT+AGG - chr3_3:71759157-71759176 None:intergenic 45.0%
GGAGTTATTCCTCCAGGAAA+AGG + chr3_3:71759166-71759185 Msa0469770:CDS 45.0%
TTAGATCAGCTCTTGGTCTC+AGG + chr3_3:71759191-71759210 Msa0469770:CDS 45.0%
TAGATCAGCTCTTGGTCTCA+GGG + chr3_3:71759192-71759211 Msa0469770:CDS 45.0%
CTCAGCTCAACATTGAGACT+GGG + chr3_3:71759531-71759550 Msa0469770:CDS 45.0%
TCAGCTCAACATTGAGACTG+GGG + chr3_3:71759532-71759551 Msa0469770:CDS 45.0%
!! GTTACAAAAGTGCCAGTTCC+AGG - chr3_3:71759626-71759645 None:intergenic 45.0%
!! AAATATTATCTTTAATAATA+AGG - chr3_3:71757397-71757416 None:intergenic 5.0%
!!! TTTTATTTTCAAAATTATTA+AGG + chr3_3:71759355-71759374 Msa0469770:intron 5.0%
!!! TTTTTTTATGAAAAAAATTT+AGG + chr3_3:71759821-71759840 Msa0469770:three_prime_UTR 5.0%
CACTTGAGGCAGAGAAGACA+AGG + chr3_3:71757218-71757237 Msa0469770:five_prime_UTR 50.0%
AAAGACCAAAGCCCCTGCTA+AGG + chr3_3:71757696-71757715 Msa0469770:CDS 50.0%
TAGTACCTTAGCAGGGGCTT+TGG - chr3_3:71757704-71757723 None:intergenic 50.0%
! AAGGATCCACCCCTTTTGAC+AGG - chr3_3:71758396-71758415 None:intergenic 50.0%
AAGGGGTGGATCCTTGACTA+AGG + chr3_3:71758401-71758420 Msa0469770:intron 50.0%
TTCACCTTGCTAGGAGCCAT+TGG + chr3_3:71759094-71759113 Msa0469770:CDS 50.0%
GATGATGAGCCTAACACTGG+AGG + chr3_3:71759145-71759164 Msa0469770:CDS 50.0%
ACTGGAGGAGTTATTCCTCC+AGG + chr3_3:71759160-71759179 Msa0469770:CDS 50.0%
GCTCAGCTCAACATTGAGAC+TGG + chr3_3:71759530-71759549 Msa0469770:CDS 50.0%
! GCTGCTTTGAATCCTGGAAC+TGG + chr3_3:71759611-71759630 Msa0469770:CDS 50.0%
AGCTCCAATGGCTCCTAGCA+AGG - chr3_3:71759101-71759120 None:intergenic 55.0%
CTAGGAGCCATTGGAGCTCT+AGG + chr3_3:71759103-71759122 Msa0469770:CDS 55.0%
ACGGTCACCTAGAGCTCCAA+TGG - chr3_3:71759113-71759132 None:intergenic 55.0%
!! ATTGGAGCTCTAGGTGACCG+TGG + chr3_3:71759112-71759131 Msa0469770:CDS 55.0%
TCAGCTCTTGGTCTCAGGGA+AGG + chr3_3:71759196-71759215 Msa0469770:CDS 55.0%
GCTCTTGGTCTCAGGGAAGG+AGG + chr3_3:71759199-71759218 Msa0469770:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 71757183 71759938 71757183 ID=Msa0469770;Name=Msa0469770
chr3_3 mRNA 71757183 71759938 71757183 ID=Msa0469770-mRNA-1;Parent=Msa0469770;Name=Msa0469770-mRNA-1;_AED=0.01;_eAED=0.01;_QI=322|1|1|1|1|1|4|274|270
chr3_3 exon 71757183 71757717 71757183 ID=Msa0469770-mRNA-1:exon:17644;Parent=Msa0469770-mRNA-1
chr3_3 exon 71757848 71757964 71757848 ID=Msa0469770-mRNA-1:exon:17645;Parent=Msa0469770-mRNA-1
chr3_3 exon 71758983 71759220 71758983 ID=Msa0469770-mRNA-1:exon:17646;Parent=Msa0469770-mRNA-1
chr3_3 exon 71759420 71759938 71759420 ID=Msa0469770-mRNA-1:exon:17647;Parent=Msa0469770-mRNA-1
chr3_3 five_prime_UTR 71757183 71757504 71757183 ID=Msa0469770-mRNA-1:five_prime_utr;Parent=Msa0469770-mRNA-1
chr3_3 CDS 71757505 71757717 71757505 ID=Msa0469770-mRNA-1:cds;Parent=Msa0469770-mRNA-1
chr3_3 CDS 71757848 71757964 71757848 ID=Msa0469770-mRNA-1:cds;Parent=Msa0469770-mRNA-1
chr3_3 CDS 71758983 71759220 71758983 ID=Msa0469770-mRNA-1:cds;Parent=Msa0469770-mRNA-1
chr3_3 CDS 71759420 71759664 71759420 ID=Msa0469770-mRNA-1:cds;Parent=Msa0469770-mRNA-1
chr3_3 three_prime_UTR 71759665 71759938 71759665 ID=Msa0469770-mRNA-1:three_prime_utr;Parent=Msa0469770-mRNA-1
Gene Sequence

>Msa0469770

ATGGCTCAAACTATGTTGCTCATGTCTAGTGTCTCTAGTACTTATTCCGTGGATTTGAAGAAAGACCCTTTGCTTCAATTACAGTGTCAAAGATTAAGGCCTAGGTTTTCTGATGTTTCGTTCAACCCACTTCCTTCAAATTCTAAGTGTTTTTCATCACGTACATTCACTACTTTGGCTCTATTCAAATCAAAGACCAAAGCCCCTGCTAAGGTTGTTAAAAAGCCAAAGCCAAAGGTTGAAGATGGTATCTTTGGAACTTCTGGAGGATTTGGTTTCACTAAGCAGAATGAACTCTTTGTTGGTCGTGTTGCTATGATCGGTTTTGCAGCATCAATATTAGGTGAAGCATTAACTGGCAAAGGAATTCTAGCACAATTGAATTTGGAAACTGGAATTCCAATTTATGAAGCTGAGCCTCTTCTCCTATTTTTCATCATTTTCACCTTGCTAGGAGCCATTGGAGCTCTAGGTGACCGTGGTAAATTTGTTGATGATGAGCCTAACACTGGAGGAGTTATTCCTCCAGGAAAAGGATTTAGATCAGCTCTTGGTCTCAGGGAAGGAGGTCCTTTATTTGGATTCACCAAATCCAATGAATTGTTTGTTGGAAGATTGGCTCAATTGGGTTTTGTTTTCTCTTTGATTGGAGAAATTATTACTGGTAAGGGAGCTCTAGCTCAGCTCAACATTGAGACTGGGGTCCCAATTACTGAAATTGAACCACTAGTGTTGTTCAATGTTATTTTCTTCTTCATTGCTGCTTTGAATCCTGGAACTGGCACTTTTGTAACAGATGAAGAAGAAGATTAG

Protein sequence

>Msa0469770

MAQTMLLMSSVSSTYSVDLKKDPLLQLQCQRLRPRFSDVSFNPLPSNSKCFSSRTFTTLALFKSKTKAPAKVVKKPKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASILGEALTGKGILAQLNLETGIPIYEAEPLLLFFIIFTLLGAIGALGDRGKFVDDEPNTGGVIPPGKGFRSALGLREGGPLFGFTKSNELFVGRLAQLGFVFSLIGEIITGKGALAQLNIETGVPITEIEPLVLFNVIFFFIAALNPGTGTFVTDEEED*