AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0979100

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0979100 MtrunA17_Chr6g0458081 100.000 211 0 0 1 211 1 211 2.86e-160 441
Msa0979100 MtrunA17_Chr2g0290891 88.626 211 24 0 1 211 1 211 4.62e-140 390
Msa0979100 MtrunA17_Chr8g0349711 67.453 212 68 1 1 211 1 212 4.50e-102 293
Msa0979100 MtrunA17_Chr8g0349681 63.507 211 72 1 1 211 379 584 1.47e-94 287
Msa0979100 MtrunA17_Chr8g0349681 66.505 206 68 1 1 206 170 374 5.60e-93 283
Msa0979100 MtrunA17_Chr8g0349681 72.500 160 44 0 1 160 8 167 4.10e-80 249
Msa0979100 MtrunA17_Chr2g0319951 55.689 167 74 0 3 169 10 176 5.41e-64 197
Msa0979100 MtrunA17_Chr2g0276941 46.789 218 97 3 3 211 12 219 1.45e-63 196
Msa0979100 MtrunA17_Chr2g0283131 45.070 213 107 3 3 211 10 216 3.30e-63 195
Msa0979100 MtrunA17_Chr4g0046261 45.070 213 107 3 3 211 10 216 7.24e-63 194
Msa0979100 MtrunA17_Chr2g0315551 53.892 167 77 0 3 169 10 176 3.25e-62 192
Msa0979100 MtrunA17_Chr4g0055651 54.545 165 75 0 3 167 5 169 7.52e-62 191
Msa0979100 MtrunA17_Chr7g0250531 47.143 210 97 3 3 211 5 201 1.10e-61 191
Msa0979100 MtrunA17_Chr7g0231131 53.049 164 77 0 4 167 13 176 1.12e-61 191
Msa0979100 MtrunA17_Chr1g0212521 48.325 209 101 4 3 210 12 214 1.13e-61 191
Msa0979100 MtrunA17_Chr4g0040781 44.131 213 109 3 3 211 10 216 1.65e-61 191
Msa0979100 MtrunA17_Chr8g0335471 47.393 211 96 3 3 211 5 202 6.22e-61 189
Msa0979100 MtrunA17_Chr1g0174281 48.315 178 92 0 4 181 13 190 8.92e-61 189
Msa0979100 MtrunA17_Chr4g0030911 46.890 209 103 3 3 210 12 213 1.14e-60 189
Msa0979100 MtrunA17_Chr4g0032201 54.430 158 72 0 3 160 9 166 2.60e-60 188
Msa0979100 MtrunA17_Chr8g0381841 51.220 164 80 0 4 167 15 178 5.30e-60 187
Msa0979100 MtrunA17_Chr3g0123821 51.515 165 80 0 4 168 14 178 9.48e-60 186
Msa0979100 MtrunA17_Chr1g0182321 44.976 209 108 3 3 210 12 214 1.48e-59 186
Msa0979100 MtrunA17_Chr3g0112681 45.933 209 111 2 3 211 9 215 1.84e-59 186
Msa0979100 MtrunA17_Chr7g0263071 46.890 209 104 3 3 210 12 214 5.77e-59 184
Msa0979100 MtrunA17_Chr1g0182301 44.498 209 109 3 3 210 12 214 6.10e-59 184
Msa0979100 MtrunA17_Chr2g0325091 43.868 212 110 2 3 211 8 213 1.40e-58 183
Msa0979100 MtrunA17_Chr6g0482721 47.115 208 108 1 4 211 10 215 3.96e-58 182
Msa0979100 MtrunA17_Chr2g0276931 50.909 165 81 0 3 167 6 170 8.69e-58 181
Msa0979100 MtrunA17_Chr7g0214241 44.019 209 113 2 5 211 14 220 2.14e-57 181
Msa0979100 MtrunA17_Chr8g0351861 51.220 164 80 0 4 167 14 177 8.09e-57 179
Msa0979100 MtrunA17_Chr8g0346421 50.610 164 81 0 4 167 24 187 8.66e-56 177
Msa0979100 MtrunA17_Chr7g0275991 50.610 164 81 0 4 167 18 181 1.04e-55 176
Msa0979100 MtrunA17_Chr7g0234201 43.478 207 114 1 5 211 12 215 4.14e-55 174
Msa0979100 MtrunA17_Chr1g0189361 43.662 213 114 2 4 211 12 223 2.89e-54 172
Msa0979100 MtrunA17_Chr7g0265001 51.462 171 77 4 3 169 13 181 1.99e-52 167
Msa0979100 MtrunA17_Chr2g0327911 45.714 175 93 2 2 174 11 185 5.71e-52 166
Msa0979100 MtrunA17_Chr8g0392931 49.438 178 82 1 4 181 12 181 1.17e-51 166
Msa0979100 MtrunA17_Chr8g0384311 49.405 168 82 3 3 168 10 176 1.70e-51 165
Msa0979100 MtrunA17_Chr1g0159481 43.128 211 108 5 3 211 14 214 5.86e-51 164
Msa0979100 MtrunA17_Chr8g0390561 42.473 186 99 3 8 193 11 188 1.18e-49 160
Msa0979100 MtrunA17_Chr3g0109721 43.750 160 90 0 8 167 12 171 3.66e-49 159
Msa0979100 MtrunA17_Chr5g0433561 44.375 160 89 0 8 167 12 171 3.78e-49 159
Msa0979100 MtrunA17_Chr3g0130271 49.112 169 82 4 3 168 9 176 5.17e-49 159
Msa0979100 MtrunA17_Chr1g0197331 50.000 172 81 4 2 169 11 181 5.64e-49 159
Msa0979100 MtrunA17_Chr1g0199331 41.615 161 93 1 8 167 33 193 3.25e-48 156
Msa0979100 MtrunA17_Chr1g0180291 48.235 170 83 4 3 169 11 178 8.84e-47 153
Msa0979100 MtrunA17_Chr3g0123971 35.533 197 119 2 7 198 10 203 5.08e-44 146
Msa0979100 MtrunA17_Chr4g0055081 39.130 161 98 0 7 167 10 170 2.72e-43 144
Msa0979100 MtrunA17_Chr8g0382221 39.130 161 98 0 7 167 10 170 4.86e-43 143
Msa0979100 MtrunA17_Chr5g0400131 35.354 198 119 3 7 198 10 204 1.53e-42 142
Msa0979100 MtrunA17_Chr6g0466301 40.116 172 96 3 6 170 8 179 3.70e-37 128
Msa0979100 MtrunA17_Chr6g0465491 40.116 172 96 3 6 170 8 179 3.70e-37 128
Msa0979100 MtrunA17_Chr8g0383261 38.857 175 100 3 6 173 12 186 2.61e-36 126
Msa0979100 MtrunA17_Chr4g0034871 39.766 171 96 3 6 169 8 178 4.80e-36 125
Msa0979100 MtrunA17_Chr1g0201121 38.953 172 98 3 6 170 8 179 3.20e-35 123
Msa0979100 MtrunA17_Chr2g0331691 37.209 172 101 3 6 170 10 181 2.48e-33 119
Msa0979100 MtrunA17_Chr4g0004661 37.791 172 100 3 6 170 64 235 1.61e-32 118
Msa0979100 MtrunA17_Chr6g0486041 32.597 181 108 5 1 169 1 179 2.73e-25 98.2
Msa0979100 MtrunA17_Chr2g0325101 29.744 195 123 5 1 183 1 193 1.74e-24 95.5
Msa0979100 MtrunA17_Chr6g0466161 34.177 158 97 3 23 173 7 164 9.66e-24 94.0
Msa0979100 MtrunA17_Chr6g0465471 34.177 158 97 3 23 173 7 164 1.01e-23 94.0
Msa0979100 MtrunA17_Chr3g0138111 32.298 161 106 2 7 167 14 171 2.24e-23 93.2
Msa0979100 MtrunA17_Chr3g0138121 32.298 161 106 2 7 167 14 171 2.39e-23 93.2
Msa0979100 MtrunA17_Chr3g0138101 32.298 161 106 2 7 167 14 171 2.49e-23 93.2
Msa0979100 MtrunA17_Chr4g0037021 32.044 181 109 6 1 169 1 179 9.45e-23 90.9
Msa0979100 MtrunA17_Chr3g0117931 31.138 167 101 5 6 160 8 172 8.54e-22 89.0
Msa0979100 MtrunA17_Chr8g0371501 28.488 172 109 5 1 160 1 170 1.32e-20 85.5
Msa0979100 MtrunA17_Chr5g0405791 27.907 172 110 5 1 160 1 170 5.82e-20 83.6
Msa0979100 MtrunA17_Chr4g0046211 33.065 124 80 3 1 123 1 122 9.63e-19 79.3
Msa0979100 MtrunA17_Chr8g0349691 73.810 42 11 0 1 42 1 42 9.37e-18 73.6
Msa0979100 MtrunA17_Chr6g0466431 36.842 95 51 1 6 100 8 93 4.32e-17 73.6
Msa0979100 MtrunA17_Chr6g0465611 36.842 95 51 1 6 100 8 93 4.32e-17 73.6
Msa0979100 MtrunA17_Chr1g0178291 32.370 173 103 6 2 174 427 585 4.13e-13 67.4
Msa0979100 MtrunA17_Chr2g0331841 41.379 58 34 0 75 132 2 59 1.71e-12 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0979100 AT4G35860.1 90.000 210 21 0 1 210 1 210 1.81e-146 406
Msa0979100 AT4G17170.1 87.619 210 26 0 1 210 1 210 1.75e-138 386
Msa0979100 AT4G17160.1 72.512 211 50 2 1 210 1 204 3.98e-109 311
Msa0979100 AT4G35860.2 87.195 164 21 0 47 210 1 164 7.37e-109 309
Msa0979100 AT5G45750.1 45.933 209 110 1 3 211 10 215 3.07e-65 201
Msa0979100 AT5G60860.1 45.070 213 107 3 3 211 10 216 7.78e-63 194
Msa0979100 AT1G06400.1 46.411 209 109 1 3 211 10 215 1.23e-62 194
Msa0979100 AT4G18430.1 46.009 213 105 3 3 211 10 216 5.47e-62 192
Msa0979100 AT1G16920.1 53.333 165 77 0 3 167 10 174 6.45e-62 192
Msa0979100 AT1G09630.1 45.933 209 111 1 3 211 9 215 2.68e-61 191
Msa0979100 AT5G59840.1 47.847 209 102 4 3 210 12 214 3.64e-61 190
Msa0979100 AT2G33870.1 45.540 213 107 3 3 211 10 217 4.51e-61 190
Msa0979100 AT3G12160.1 51.786 168 81 0 4 171 13 180 4.84e-61 190
Msa0979100 AT4G18800.1 44.019 209 112 1 3 211 10 213 7.10e-61 189
Msa0979100 AT3G15060.1 44.601 213 108 3 3 211 10 216 8.98e-61 189
Msa0979100 AT1G02130.1 46.445 211 98 3 3 211 5 202 1.58e-60 188
Msa0979100 AT1G28550.1 45.540 213 107 3 3 211 10 217 2.34e-60 188
Msa0979100 AT4G39990.1 54.777 157 71 0 4 160 15 171 2.78e-60 188
Msa0979100 AT4G17530.1 53.333 165 77 0 3 167 5 169 3.54e-60 187
Msa0979100 AT3G53610.2 46.411 209 105 3 3 210 12 214 4.50e-60 187
Msa0979100 AT3G53610.3 46.411 209 105 3 3 210 12 214 4.50e-60 187
Msa0979100 AT3G53610.1 46.411 209 105 3 3 210 12 214 4.50e-60 187
Msa0979100 AT5G65270.1 52.121 165 79 0 4 168 15 179 6.61e-60 187
Msa0979100 AT5G59150.1 52.071 169 81 0 3 171 9 177 7.42e-60 187
Msa0979100 AT5G47960.1 53.049 164 77 0 4 167 13 176 8.55e-60 187
Msa0979100 AT3G46060.2 46.890 209 104 4 3 210 12 214 1.61e-59 186
Msa0979100 AT3G46060.3 46.890 209 104 4 3 210 12 214 1.61e-59 186
Msa0979100 AT3G46060.1 46.890 209 104 4 3 210 12 214 1.61e-59 186
Msa0979100 AT1G07410.1 45.455 209 110 2 3 211 9 213 2.24e-59 186
Msa0979100 AT3G46830.1 54.430 158 72 0 3 160 9 166 2.46e-59 186
Msa0979100 AT3G46830.2 54.430 158 72 0 3 160 9 166 2.46e-59 186
Msa0979100 AT3G09900.1 45.714 210 108 3 3 211 12 216 8.12e-59 184
Msa0979100 AT5G03520.1 46.190 210 105 3 3 211 12 214 2.39e-58 183
Msa0979100 AT5G47200.1 52.727 165 78 0 3 167 5 169 2.53e-58 182
Msa0979100 AT2G43130.1 51.190 168 82 0 4 171 10 177 5.63e-57 179
Msa0979100 AT3G11730.1 51.515 165 80 0 3 167 5 169 9.59e-56 176
Msa0979100 AT1G18200.1 46.667 195 97 1 4 191 11 205 1.11e-55 177
Msa0979100 AT5G47520.1 51.176 170 82 1 2 171 10 178 3.06e-55 175
Msa0979100 AT1G73640.1 52.439 164 78 0 4 167 11 174 3.42e-55 176
Msa0979100 AT3G07410.1 50.000 168 84 0 4 171 10 177 5.56e-55 174
Msa0979100 AT1G05810.1 42.180 211 115 2 4 211 10 216 5.73e-55 174
Msa0979100 AT2G31680.1 42.308 208 120 0 4 211 10 217 1.07e-54 174
Msa0979100 AT1G05810.2 42.180 211 115 2 4 211 56 262 2.20e-54 174
Msa0979100 AT1G43890.3 52.071 169 78 3 3 169 10 177 1.26e-53 171
Msa0979100 AT1G43890.1 52.071 169 78 3 3 169 10 177 1.26e-53 171
Msa0979100 AT1G43890.2 52.071 169 78 3 3 169 10 177 1.26e-53 171
Msa0979100 AT1G01200.1 47.929 169 87 1 4 171 26 194 1.77e-52 169
Msa0979100 AT5G45130.1 40.686 204 106 4 8 211 12 200 4.94e-49 159
Msa0979100 AT5G03530.2 49.708 171 79 4 3 169 10 177 5.71e-49 159
Msa0979100 AT5G03530.1 49.708 171 79 4 3 169 10 177 5.71e-49 159
Msa0979100 AT5G45130.2 40.594 202 105 4 10 211 22 208 3.09e-48 157
Msa0979100 AT4G19640.1 43.125 160 91 0 8 167 12 171 5.56e-48 156
Msa0979100 AT3G54840.2 41.558 154 89 1 8 160 35 188 1.48e-45 150
Msa0979100 AT3G54840.1 41.558 154 89 1 8 160 35 188 1.83e-45 150
Msa0979100 AT3G54840.3 41.447 152 88 1 10 160 3 154 3.50e-45 148
Msa0979100 AT4G39890.1 41.358 162 94 1 7 167 10 171 8.91e-44 146
Msa0979100 AT5G10260.1 39.130 161 98 0 7 167 10 170 3.28e-43 144
Msa0979100 AT5G03520.2 43.023 172 90 3 41 211 40 204 2.33e-42 142
Msa0979100 AT5G59150.2 50.806 124 61 0 48 171 3 126 1.00e-41 139
Msa0979100 AT2G22290.1 38.509 161 99 0 7 167 10 170 1.96e-41 140
Msa0979100 AT3G09910.5 44.000 175 91 4 3 173 10 181 1.44e-40 137
Msa0979100 AT3G09910.4 44.000 175 91 4 3 173 10 181 1.44e-40 137
Msa0979100 AT2G44610.1 33.838 198 123 3 7 198 10 205 1.84e-40 137
Msa0979100 AT5G64990.1 39.024 164 100 0 7 170 8 171 3.22e-40 136
Msa0979100 AT3G09910.3 44.444 171 88 4 3 169 10 177 1.38e-39 135
Msa0979100 AT3G09910.1 44.444 171 88 4 3 169 10 177 1.38e-39 135
Msa0979100 AT3G09910.2 44.444 171 88 4 3 169 10 177 1.38e-39 135
Msa0979100 AT5G64990.2 37.427 171 100 1 7 170 8 178 1.77e-37 130
Msa0979100 AT5G39620.1 39.766 171 96 3 7 170 6 176 4.68e-37 128
Msa0979100 AT3G18820.1 39.535 172 97 3 6 170 8 179 7.87e-36 125
Msa0979100 AT2G21880.1 38.953 172 98 3 6 170 9 180 1.55e-35 125
Msa0979100 AT1G22740.1 37.714 175 102 3 6 173 8 182 1.66e-35 124
Msa0979100 AT1G49300.2 35.176 199 119 4 6 197 8 203 1.23e-34 122
Msa0979100 AT1G49300.1 35.176 199 119 4 6 197 8 203 1.23e-34 122
Msa0979100 AT4G09720.1 38.372 172 99 3 6 170 8 179 1.23e-34 122
Msa0979100 AT4G19640.2 40.476 126 75 0 8 133 12 137 1.84e-34 120
Msa0979100 AT4G19640.3 39.695 131 79 0 8 138 12 142 2.94e-34 121
Msa0979100 AT1G52280.1 39.506 162 91 3 6 160 8 169 4.07e-34 121
Msa0979100 AT3G16100.1 37.791 172 100 3 6 170 8 179 2.97e-33 119
Msa0979100 AT4G09720.4 37.288 177 99 4 6 170 8 184 3.25e-32 116
Msa0979100 AT4G09720.3 36.066 183 99 4 6 170 8 190 3.46e-31 114
Msa0979100 AT2G21880.4 37.255 153 89 3 25 170 3 155 2.54e-27 103
Msa0979100 AT2G21880.3 37.255 153 89 3 25 170 3 155 2.54e-27 103
Msa0979100 AT2G21880.2 34.302 172 98 4 6 170 9 172 9.39e-26 99.4
Msa0979100 AT4G28950.1 31.844 179 110 5 1 169 1 177 3.85e-25 97.8
Msa0979100 AT4G09720.6 37.857 140 80 3 38 170 6 145 1.34e-24 95.5
Msa0979100 AT4G09720.5 37.857 140 80 3 38 170 6 145 1.34e-24 95.5
Msa0979100 AT4G09720.2 37.857 140 80 3 38 170 6 145 1.34e-24 95.5
Msa0979100 AT2G44690.1 31.818 176 106 5 6 169 18 191 4.35e-24 95.1
Msa0979100 AT4G35020.1 32.044 181 109 5 1 169 1 179 6.33e-24 94.4
Msa0979100 AT4G35020.2 32.044 181 109 5 1 169 1 179 6.33e-24 94.4
Msa0979100 AT4G35020.3 32.044 181 109 5 1 169 1 179 6.33e-24 94.4
Msa0979100 AT5G46025.1 43.396 106 59 1 67 171 5 110 8.53e-24 91.7
Msa0979100 AT5G20020.1 32.298 161 106 2 7 167 14 171 2.75e-23 93.6
Msa0979100 AT5G55190.1 32.298 161 106 2 7 167 14 171 3.58e-23 93.2
Msa0979100 AT5G20010.1 32.298 161 106 2 7 167 14 171 3.86e-23 93.2
Msa0979100 AT1G75840.1 30.233 172 106 5 1 160 1 170 1.54e-22 90.9
Msa0979100 AT1G20090.1 29.940 167 103 5 6 160 5 169 6.90e-22 89.0
Msa0979100 AT5G45970.1 30.233 172 106 5 1 160 1 170 9.03e-22 89.0
Msa0979100 AT5G55080.1 31.056 161 108 2 7 167 14 171 9.92e-22 89.4
Msa0979100 AT3G48040.1 30.539 167 102 5 6 160 8 172 1.05e-20 86.3
Msa0979100 AT3G51300.1 28.488 172 109 5 1 160 1 170 1.12e-20 85.9
Msa0979100 AT5G62880.1 28.090 178 114 5 6 171 8 183 5.02e-20 84.7
Msa0979100 AT2G17800.2 28.488 172 109 5 1 160 1 170 6.94e-20 84.0
Msa0979100 AT2G17800.1 28.488 172 109 5 1 160 1 170 6.94e-20 84.0
Msa0979100 AT4G35950.1 27.907 172 110 5 1 160 1 170 3.34e-19 82.0
Msa0979100 AT5G62880.2 29.518 166 103 5 6 159 8 171 3.08e-18 79.3
Msa0979100 AT3G48040.2 29.814 161 99 5 6 154 8 166 4.30e-18 78.6
Msa0979100 AT4G35020.4 33.058 121 78 3 1 120 1 119 2.68e-16 73.2
Msa0979100 AT4G35020.5 33.058 121 78 3 1 120 1 119 2.68e-16 73.2
Msa0979100 AT4G08190.1 46.875 64 31 1 97 160 67 127 2.80e-11 59.3

Find 70 sgRNAs with CRISPR-Local

Find 469 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGATGAAACGACGTCGTTT+AGG 0.242969 6_4:+15510838 None:intergenic
GTATGCTTACTATTGATTCT+AGG 0.255903 6_4:-15510581 Msa0979100:CDS
TCCCATATCTGAAGCTTAAT+TGG 0.260018 6_4:+15510558 None:intergenic
ATGAGCGTGATTGTCATATT+AGG 0.292345 6_4:+15506050 None:intergenic
TGATTGATCTAAAAGATTCT+TGG 0.311661 6_4:+15507348 None:intergenic
TAGTAAATGTTTAAAATTGT+TGG 0.323698 6_4:-15504516 Msa0979100:three_prime_UTR
AGATGAAACGACGTCGTTTA+GGG 0.328844 6_4:+15510839 None:intergenic
GAGCAATTTGCAAAGGAAAA+TGG 0.337907 6_4:-15505975 Msa0979100:CDS
GAGAGAGACATTTAATCATT+TGG 0.342052 6_4:-15506108 Msa0979100:CDS
AATATGACAATCACGCTCAT+AGG 0.342276 6_4:-15506047 Msa0979100:CDS
CTTACTATTGGTGTTGAGTT+TGG 0.348994 6_4:-15510609 Msa0979100:CDS
GGCCAATTAAGCTTCAGATA+TGG 0.350014 6_4:-15510560 Msa0979100:CDS
CCAGAGATAGATTGCACAAA+AGG 0.371017 6_4:+15504661 None:intergenic
CCTGTTCATGATCTTACTAT+TGG 0.378228 6_4:-15510621 Msa0979100:CDS
GCCAATTAAGCTTCAGATAT+GGG 0.388946 6_4:-15510559 Msa0979100:CDS
TTCCATCTCTGCCTCCTGCT+TGG 0.391979 6_4:+15504746 None:intergenic
CATTTAATCATTTGGCAAGT+TGG 0.399779 6_4:-15506100 Msa0979100:CDS
TCCTTCAGTTCACTGATAAG+AGG 0.407370 6_4:-15510650 Msa0979100:CDS
GTAGTCGTACGACATGGTTT+TGG 0.407724 6_4:+15510816 None:intergenic
GTGACGTATAATGTGGGTAT+AGG 0.438152 6_4:+15510971 None:intergenic
CCTCTTTGCTCACTGCCCTT+CGG 0.442944 6_4:+15506003 None:intergenic
GGCAGTGAGCAAAGAGGAGG+GGG 0.451669 6_4:-15505997 Msa0979100:CDS
CTGCCTCCTGCTTGGCCTTG+TGG 0.463852 6_4:+15504754 None:intergenic
GGCCAAGCAGGAGGCAGAGA+TGG 0.468575 6_4:-15504748 Msa0979100:CDS
CGTGATTGTCATATTAGGAT+TGG 0.475760 6_4:+15506055 None:intergenic
AAGGGCAGTGAGCAAAGAGG+AGG 0.477278 6_4:-15506000 Msa0979100:CDS
CAGACATGTGGTATAAAAGT+TGG 0.477942 6_4:-15504787 Msa0979100:CDS
AGGGCAGTGAGCAAAGAGGA+GGG 0.482998 6_4:-15505999 Msa0979100:CDS
TTCTCTACGGTGCAGGTGTA+GGG 0.493014 6_4:-15510686 Msa0979100:intron
TCTTACTACAGAGGAGCAGC+GGG 0.504603 6_4:-15507320 Msa0979100:CDS
ACCTCTTATCAGTGAACTGA+AGG 0.507063 6_4:+15510649 None:intergenic
GGACGTCCACAAGGCCAAGC+AGG 0.515013 6_4:-15504760 Msa0979100:CDS
ATTACTCTGTTATTATTGCA+AGG 0.519086 6_4:+15504423 None:intergenic
CCAATAGTAAGATCATGAAC+AGG 0.520338 6_4:+15510621 None:intergenic
TAATCATTTGGCAAGTTGGT+TGG 0.522425 6_4:-15506096 Msa0979100:CDS
ACTGTAGATAGTTACCTCAT+TGG 0.524670 6_4:+15505732 None:intergenic
GACAGCACAAAATGTGGAAG+AGG 0.531272 6_4:-15505925 Msa0979100:intron
ACACATCAAAGACACCATCT+TGG 0.532495 6_4:+15505755 None:intergenic
TTTGAGAAGAAAGGAAAGAG+AGG 0.537654 6_4:+15510873 None:intergenic
AGAGATGGAACTGTTGCTGC+AGG 0.538333 6_4:-15504733 Msa0979100:CDS
ATGTATAGCTTTGATCTCAA+AGG 0.539300 6_4:-15504578 Msa0979100:three_prime_UTR
GCATGTTGCAGCTGATTTGA+AGG 0.539449 6_4:-15504706 Msa0979100:exon
ATATGACAATCACGCTCATA+GGG 0.544854 6_4:-15506046 Msa0979100:CDS
TGTGGTATAAAAGTTGGCTA+TGG 0.550908 6_4:-15504781 Msa0979100:CDS
AACTAAGGTGACGTATAATG+TGG 0.554124 6_4:+15510964 None:intergenic
CGATGATGATGTACTTGAAG+AGG 0.558316 6_4:+15510794 None:intergenic
CTCTTCAAGTACATCATCAT+CGG 0.560852 6_4:-15510793 Msa0979100:CDS
GGGCAGTGAGCAAAGAGGAG+GGG 0.564964 6_4:-15505998 Msa0979100:CDS
TGCCAAGACAGCACAAAATG+TGG 0.572251 6_4:-15505931 Msa0979100:CDS
CAGTCAAATTTGTCACAAGA+AGG 0.576152 6_4:+15504555 None:intergenic
GGAATAAAACAAATTCATAA+CGG 0.577881 6_4:+15504478 None:intergenic
TACATCATCATCGGTGACAC+AGG 0.585497 6_4:-15510784 Msa0979100:intron
ATCTTACTACAGAGGAGCAG+CGG 0.591758 6_4:-15507321 Msa0979100:CDS
GATGAAACGACGTCGTTTAG+GGG 0.592223 6_4:+15510840 None:intergenic
CAAGTTGGTTGGAAGATGCG+CGG 0.603563 6_4:-15506085 Msa0979100:CDS
ATTCTTCAGAACATCCAAGA+TGG 0.605283 6_4:-15505769 Msa0979100:CDS
GTTGGCTATGGACGTCCACA+AGG 0.613693 6_4:-15504769 Msa0979100:CDS
GTGTGATCTGTCTCACCGAA+GGG 0.615957 6_4:-15506018 Msa0979100:CDS
TTCTAGTTTATGACATTACG+AGG 0.616752 6_4:-15507292 Msa0979100:intron
CGTCCACAAGGCCAAGCAGG+AGG 0.622485 6_4:-15504757 Msa0979100:CDS
CCGAAGGGCAGTGAGCAAAG+AGG 0.629706 6_4:-15506003 Msa0979100:CDS
ACTAAGGTGACGTATAATGT+GGG 0.634356 6_4:+15510965 None:intergenic
AATCTATTATTGCAGACATG+TGG 0.643188 6_4:-15504799 Msa0979100:intron
TTACTACAGAGGAGCAGCGG+GGG 0.651593 6_4:-15507318 Msa0979100:CDS
GAAGAGGTAGTCGTACGACA+TGG 0.657558 6_4:+15510810 None:intergenic
GATGGAACTGTTGCTGCAGG+AGG 0.658044 6_4:-15504730 Msa0979100:CDS
AGTGTGATCTGTCTCACCGA+AGG 0.660069 6_4:-15506019 Msa0979100:CDS
ATCACTAGATCTTACTACAG+AGG 0.666395 6_4:-15507329 Msa0979100:CDS
CTTACTACAGAGGAGCAGCG+GGG 0.738492 6_4:-15507319 Msa0979100:CDS
TGTCTTTGATGTGTCCAATG+AGG 0.741949 6_4:-15505746 Msa0979100:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTTTTTTTTTTTTATGAA+AGG + chr6_4:15506816-15506835 None:intergenic 10.0%
!! AATCTAAATCAAAAAAACTA+AGG + chr6_4:15504445-15504464 None:intergenic 15.0%
!!! TTTAATTTTTTGGTATAAAG+AGG - chr6_4:15506066-15506085 Msa0979100:CDS 15.0%
!! TGTGTTTAAAAATAGAAAAT+AGG - chr6_4:15506418-15506437 Msa0979100:intron 15.0%
!! GTGTTTAAAAATAGAAAATA+GGG - chr6_4:15506419-15506438 Msa0979100:intron 15.0%
!! TGTTTAAAAATAGAAAATAG+GGG - chr6_4:15506420-15506439 Msa0979100:intron 15.0%
!! ATGTTGAAAAAACATATTAA+GGG + chr6_4:15506474-15506493 None:intergenic 15.0%
!! ATAAATGTAGATATAGATAT+TGG - chr6_4:15506514-15506533 Msa0979100:intron 15.0%
!! TTAGAAAGAAACATAAATTA+AGG - chr6_4:15507522-15507541 Msa0979100:intron 15.0%
!! ATAAGCAATAATAAAAGAAA+AGG + chr6_4:15508484-15508503 None:intergenic 15.0%
!!! CATAAATTGATTTGTTTATA+TGG + chr6_4:15509139-15509158 None:intergenic 15.0%
!!! TTAACCAAAAAAAAAGATTT+TGG - chr6_4:15509997-15510016 Msa0979100:intron 15.0%
!!! ATAACCAAAATCTTTTTTTT+TGG + chr6_4:15510004-15510023 None:intergenic 15.0%
!!! AAGATTTTGGTTATTTTAAA+AGG - chr6_4:15510010-15510029 Msa0979100:intron 15.0%
!!! TAGTAAATGTTTAAAATTGT+TGG - chr6_4:15510875-15510894 Msa0979100:five_prime_UTR 15.0%
!!! GAATTATTGTTTTTTGTGTT+TGG - chr6_4:15504914-15504933 Msa0979100:intron 20.0%
!! ATTGAACTATTTGTAATTAC+CGG - chr6_4:15504986-15505005 Msa0979100:intron 20.0%
!! TTTCTAATCATTTCTACTAT+AGG + chr6_4:15505293-15505312 None:intergenic 20.0%
!! AATGATTAGAAACTATACTT+AGG - chr6_4:15505301-15505320 Msa0979100:intron 20.0%
!! TATAAGAGAAACTATTAAGA+AGG - chr6_4:15505428-15505447 Msa0979100:intron 20.0%
!! AACACATAAAGTAGAAAAAA+TGG - chr6_4:15505690-15505709 Msa0979100:intron 20.0%
!! TGGTTTATGATATAACATTA+CGG - chr6_4:15505874-15505893 Msa0979100:intron 20.0%
!! AACCAAACAATAAAAAGAAA+CGG + chr6_4:15506227-15506246 None:intergenic 20.0%
!! TGGTTGTATAATAGAAAATA+AGG - chr6_4:15506242-15506261 Msa0979100:intron 20.0%
!! GGTTGTATAATAGAAAATAA+GGG - chr6_4:15506243-15506262 Msa0979100:intron 20.0%
!! GTTTAAAAATAGAAAATAGG+GGG - chr6_4:15506421-15506440 Msa0979100:intron 20.0%
!! TGTTGAAAAAACATATTAAG+GGG + chr6_4:15506473-15506492 None:intergenic 20.0%
!! GATGTTGAAAAAACATATTA+AGG + chr6_4:15506475-15506494 None:intergenic 20.0%
!!! CTTTTATAATTTTGTCTGTT+GGG + chr6_4:15506777-15506796 None:intergenic 20.0%
!!! TCTTTTATAATTTTGTCTGT+TGG + chr6_4:15506778-15506797 None:intergenic 20.0%
!!! AATTTCTTAACCGATTTTTT+GGG - chr6_4:15506915-15506934 Msa0979100:intron 20.0%
!!! ATTTCATTTTTGAGAATTGT+TGG + chr6_4:15507217-15507236 None:intergenic 20.0%
!! TAACCTATGTAATAAACAAT+AGG + chr6_4:15507752-15507771 None:intergenic 20.0%
!! GAATAGAAAGAAAATTAAAC+AGG + chr6_4:15507799-15507818 None:intergenic 20.0%
!!! TTTCAATTACTGATTTTGAT+AGG + chr6_4:15507865-15507884 None:intergenic 20.0%
!!! TTTAAGTTTGACAATAAACT+AGG + chr6_4:15508561-15508580 None:intergenic 20.0%
!!! ATGGATTGAACTTTTAAAAA+GGG + chr6_4:15508772-15508791 None:intergenic 20.0%
!! AAAATGTGTTTATAAGTAAG+AGG - chr6_4:15508939-15508958 Msa0979100:intron 20.0%
!! ATTCTCTTAAAATTTGGATT+GGG + chr6_4:15509068-15509087 None:intergenic 20.0%
!! TAGAAATACAGAAAATAGAA+GGG + chr6_4:15509175-15509194 None:intergenic 20.0%
!! ATAGAAATACAGAAAATAGA+AGG + chr6_4:15509176-15509195 None:intergenic 20.0%
!! GTTTCTTCATCTTAAATAAA+AGG + chr6_4:15509804-15509823 None:intergenic 20.0%
!!! TGTTTACATCCTTTTTTTAT+TGG - chr6_4:15510156-15510175 Msa0979100:intron 20.0%
!! AAATTAAAAGGAAATCTTAC+TGG - chr6_4:15510329-15510348 Msa0979100:intron 20.0%
!! AATTAAAAGGAAATCTTACT+GGG - chr6_4:15510330-15510349 Msa0979100:intron 20.0%
!! GGAATAAAACAAATTCATAA+CGG + chr6_4:15510916-15510935 None:intergenic 20.0%
!! AAGTTATAGCGTTTTATGTT+TGG + chr6_4:15504498-15504517 None:intergenic 25.0%
!! AATAAAATTCTAGAGAGAGA+GGG + chr6_4:15504877-15504896 None:intergenic 25.0%
!! TAATAAAATTCTAGAGAGAG+AGG + chr6_4:15504878-15504897 None:intergenic 25.0%
! TTGAACTATTTGTAATTACC+GGG - chr6_4:15504987-15505006 Msa0979100:intron 25.0%
!!! GTTTAATTTTTATGCACCAT+CGG - chr6_4:15505044-15505063 Msa0979100:intron 25.0%
!! AGTAAGAAGAGTATATCATA+TGG - chr6_4:15505362-15505381 Msa0979100:intron 25.0%
! ACATAAAGTAGAAAAAATGG+TGG - chr6_4:15505693-15505712 Msa0979100:intron 25.0%
! TGATGAGTTAAATCGAAATA+TGG - chr6_4:15505854-15505873 Msa0979100:intron 25.0%
! TAAAACTAATTTAACTGGCA+GGG - chr6_4:15506179-15506198 Msa0979100:intron 25.0%
! AAAAGAAACGGAGTATAATT+GGG + chr6_4:15506215-15506234 None:intergenic 25.0%
! AAAAAGAAACGGAGTATAAT+TGG + chr6_4:15506216-15506235 None:intergenic 25.0%
! CAACATAAGAAAAACTAACA+TGG + chr6_4:15506356-15506375 None:intergenic 25.0%
! CTATATCTACATTTATACAC+AGG + chr6_4:15506510-15506529 None:intergenic 25.0%
! CTATAGACCTAATATACTAA+AGG - chr6_4:15506608-15506627 Msa0979100:intron 25.0%
! GTAGATTCCTTTAGTATATT+AGG + chr6_4:15506618-15506637 None:intergenic 25.0%
!!! TTTTTTCCACTACGTATAAT+AGG + chr6_4:15506662-15506681 None:intergenic 25.0%
! AAAAAACTTGGTTGTTATCA+TGG - chr6_4:15506677-15506696 Msa0979100:intron 25.0%
!!! CAATTTCTTAACCGATTTTT+TGG - chr6_4:15506914-15506933 Msa0979100:intron 25.0%
!!! ATTTCTTAACCGATTTTTTG+GGG - chr6_4:15506916-15506935 Msa0979100:intron 25.0%
! TTTAATTGAATCATTGGGTT+AGG + chr6_4:15507192-15507211 None:intergenic 25.0%
! TGGTGTTTAATTGAATCATT+GGG + chr6_4:15507197-15507216 None:intergenic 25.0%
!! TTGGTGTTTAATTGAATCAT+TGG + chr6_4:15507198-15507217 None:intergenic 25.0%
! GAACCTATTGTTTATTACAT+AGG - chr6_4:15507746-15507765 Msa0979100:intron 25.0%
!! ATGTAAGACATCTTTATTTG+TGG - chr6_4:15507771-15507790 Msa0979100:intron 25.0%
! GTATATTATATTGATCCACA+TGG - chr6_4:15507905-15507924 Msa0979100:intron 25.0%
! AAACAACAAATGAAGATACT+GGG + chr6_4:15507972-15507991 None:intergenic 25.0%
! AAAACAACAAATGAAGATAC+TGG + chr6_4:15507973-15507992 None:intergenic 25.0%
! ATAAGATTCAAATACTGATG+TGG - chr6_4:15507995-15508014 Msa0979100:intron 25.0%
! TGATTGATCTAAAAGATTCT+TGG + chr6_4:15508046-15508065 None:intergenic 25.0%
! AGAATTGAAACTTTCGAATA+GGG + chr6_4:15508509-15508528 None:intergenic 25.0%
! AAGAATTGAAACTTTCGAAT+AGG + chr6_4:15508510-15508529 None:intergenic 25.0%
!!! GATGGATTGAACTTTTAAAA+AGG + chr6_4:15508773-15508792 None:intergenic 25.0%
! AAAGTTCAATCCATCTTAAA+TGG - chr6_4:15508778-15508797 Msa0979100:intron 25.0%
! CATTCTCTTAAAATTTGGAT+TGG + chr6_4:15509069-15509088 None:intergenic 25.0%
! GGATACATTCTCTTAAAATT+TGG + chr6_4:15509074-15509093 None:intergenic 25.0%
! AGAAATACAGAAAATAGAAG+GGG + chr6_4:15509174-15509193 None:intergenic 25.0%
!!! ATTTTCTGTATTTCTATGTG+TGG - chr6_4:15509179-15509198 Msa0979100:intron 25.0%
!!! AGCAGTAGGTTATTTTTTTA+TGG + chr6_4:15509568-15509587 None:intergenic 25.0%
! ATCAAATAACCTGTAACAAA+CGG - chr6_4:15510095-15510114 Msa0979100:intron 25.0%
! AGTAGATCACCAATAAAAAA+AGG + chr6_4:15510168-15510187 None:intergenic 25.0%
! AACTAACAATCAATAACACA+AGG + chr6_4:15510241-15510260 None:intergenic 25.0%
!!! CTACTTTATTTGGCTAATTT+TGG + chr6_4:15510267-15510286 None:intergenic 25.0%
!!! CATTGAAAATTTTAGCCAAA+AGG + chr6_4:15510572-15510591 None:intergenic 25.0%
! ATTACTCTGTTATTATTGCA+AGG + chr6_4:15510971-15510990 None:intergenic 25.0%
!! TTGATTTTGAGTGTGGATTA+TGG + chr6_4:15504473-15504492 None:intergenic 30.0%
!!! TTTGGTTTTGATTTTGAGTG+TGG + chr6_4:15504480-15504499 None:intergenic 30.0%
!!! GAGTTTTGTTTTGAGAAGAA+AGG + chr6_4:15504530-15504549 None:intergenic 30.0%
! CCTTTTGAACGAATTGAAAA+GGG + chr6_4:15504652-15504671 None:intergenic 30.0%
! CCTTTTCAATTCGTTCAAAA+GGG - chr6_4:15504650-15504669 Msa0979100:three_prime_UTR 30.0%
! ACCGATTCTGATTTCAAAAT+TGG - chr6_4:15504675-15504694 Msa0979100:three_prime_UTR 30.0%
!!! CCCAATTTTGAAATCAGAAT+CGG + chr6_4:15504679-15504698 None:intergenic 30.0%
CCGATTCTGATTTCAAAATT+GGG - chr6_4:15504676-15504695 Msa0979100:three_prime_UTR 30.0%
!!! AATTGGGTTTTGATTCTCTA+CGG - chr6_4:15504692-15504711 Msa0979100:three_prime_UTR 30.0%
!! GTATGCTTACTATTGATTCT+AGG - chr6_4:15504810-15504829 Msa0979100:intron 30.0%
! TGTGTTTGGTAGTTGAAATT+AGG - chr6_4:15504928-15504947 Msa0979100:intron 30.0%
! CGTTTAACTTATGTTTGTGT+TGG + chr6_4:15505104-15505123 None:intergenic 30.0%
! CGTTTAACTTATGTTTGTGT+TGG + chr6_4:15505104-15505123 None:intergenic 30.0%
TTAGAAATGACATTAGAGAG+AGG - chr6_4:15505254-15505273 Msa0979100:intron 30.0%
TAGAAATGACATTAGAGAGA+GGG - chr6_4:15505255-15505274 Msa0979100:intron 30.0%
GATTAGAAACTATACTTAGG+TGG - chr6_4:15505304-15505323 Msa0979100:intron 30.0%
AAACTATACTTAGGTGGTTT+GGG - chr6_4:15505310-15505329 Msa0979100:intron 30.0%
! AAGAAGAGTATATCATATGG+AGG - chr6_4:15505365-15505384 Msa0979100:intron 30.0%
! AGAAGAGTATATCATATGGA+GGG - chr6_4:15505366-15505385 Msa0979100:intron 30.0%
! GTTTCTCTTATAGTTTTTCC+AGG + chr6_4:15505420-15505439 None:intergenic 30.0%
! TAGAAAAAATGGTGGAAAAC+AGG - chr6_4:15505701-15505720 Msa0979100:intron 30.0%
ACTAGATTCTCATTGAATGT+CGG + chr6_4:15506108-15506127 None:intergenic 30.0%
CGGTGTAAAACTAATTTAAC+TGG - chr6_4:15506174-15506193 Msa0979100:intron 30.0%
GTAAAACTAATTTAACTGGC+AGG - chr6_4:15506178-15506197 Msa0979100:intron 30.0%
! CTCCGTTTCTTTTTATTGTT+TGG - chr6_4:15506222-15506241 Msa0979100:intron 30.0%
! ATAATAGAAAATAAGGGTGC+TGG - chr6_4:15506249-15506268 Msa0979100:intron 30.0%
!! TAATAGAAAATAAGGGTGCT+GGG - chr6_4:15506250-15506269 Msa0979100:intron 30.0%
! ATACGTAGTGGAAAAAAACT+TGG - chr6_4:15506665-15506684 Msa0979100:intron 30.0%
TTATCATGGTTGTCAAAATC+AGG - chr6_4:15506691-15506710 Msa0979100:intron 30.0%
! TATAATTTTGTCTGTTGGGT+GGG + chr6_4:15506773-15506792 None:intergenic 30.0%
! TTATAATTTTGTCTGTTGGG+TGG + chr6_4:15506774-15506793 None:intergenic 30.0%
!!! AGGTTTTTTCCCCAAAAAAT+CGG + chr6_4:15506928-15506947 None:intergenic 30.0%
GAAAAAAAAAACGTGAGGAA+TGG - chr6_4:15506972-15506991 Msa0979100:intron 30.0%
! GAATGGTTTGACTGATATTT+TGG - chr6_4:15506989-15507008 Msa0979100:intron 30.0%
TAGAAGCAATGAAAGATGAA+AGG - chr6_4:15507096-15507115 Msa0979100:intron 30.0%
AGAAGCAATGAAAGATGAAA+GGG - chr6_4:15507097-15507116 Msa0979100:intron 30.0%
! AATCATTGGGTTAGGAAATT+GGG + chr6_4:15507184-15507203 None:intergenic 30.0%
! TATTGCAAATGATGATGCTT+TGG - chr6_4:15507498-15507517 Msa0979100:intron 30.0%
!! CTTACTTAACTTGTCTTTCA+CGG - chr6_4:15507637-15507656 Msa0979100:intron 30.0%
TATTATATTGATCCACATGG+AGG - chr6_4:15507908-15507927 Msa0979100:intron 30.0%
!! TTCTAGTTTATGACATTACG+AGG - chr6_4:15508099-15508118 Msa0979100:intron 30.0%
ACATTTAGCATTCATCAAAG+TGG + chr6_4:15508184-15508203 None:intergenic 30.0%
! TAAAGTTTGAAACTGTGGAT+TGG + chr6_4:15508334-15508353 None:intergenic 30.0%
! AACGATAAAGTTTGAAACTG+TGG + chr6_4:15508339-15508358 None:intergenic 30.0%
AGTTTCAATTCTTCTGAACT+TGG - chr6_4:15508517-15508536 Msa0979100:intron 30.0%
ACTTAAAAGTTCAATCCATG+AGG - chr6_4:15508574-15508593 Msa0979100:intron 30.0%
CTTAAAAGTTCAATCCATGA+GGG - chr6_4:15508575-15508594 Msa0979100:intron 30.0%
TTAAAAGTTCAATCCATGAG+GGG - chr6_4:15508576-15508595 Msa0979100:intron 30.0%
GATTGGAAAACCATTTAAGA+TGG + chr6_4:15508791-15508810 None:intergenic 30.0%
! ATGGTTTTCCAATCCTTTAT+CGG - chr6_4:15508797-15508816 Msa0979100:intron 30.0%
CTCAAGTTTATGAATGAATG+TGG - chr6_4:15508877-15508896 Msa0979100:intron 30.0%
! AACAAAAGTGTATTGTTTGG+GGG + chr6_4:15509116-15509135 None:intergenic 30.0%
! GAACAAAAGTGTATTGTTTG+GGG + chr6_4:15509117-15509136 None:intergenic 30.0%
! GGAACAAAAGTGTATTGTTT+GGG + chr6_4:15509118-15509137 None:intergenic 30.0%
! TGGAACAAAAGTGTATTGTT+TGG + chr6_4:15509119-15509138 None:intergenic 30.0%
AAATACAGAAAATAGAAGGG+GGG + chr6_4:15509172-15509191 None:intergenic 30.0%
GAAATACAGAAAATAGAAGG+GGG + chr6_4:15509173-15509192 None:intergenic 30.0%
! CTGATTTTCAATTGAAAGCA+TGG + chr6_4:15509243-15509262 None:intergenic 30.0%
! AGAAAATTCTTTTGTTGCTC+AGG - chr6_4:15509261-15509280 Msa0979100:intron 30.0%
GAGAGAGACATTTAATCATT+TGG - chr6_4:15509283-15509302 Msa0979100:intron 30.0%
CATTTAATCATTTGGCAAGT+TGG - chr6_4:15509291-15509310 Msa0979100:intron 30.0%
!! GGAAAATGGACTTTTATTCA+TGG - chr6_4:15509430-15509449 Msa0979100:intron 30.0%
!! AAATGGACTTTTATTCATGG+AGG - chr6_4:15509433-15509452 Msa0979100:intron 30.0%
AAAGATGCAGCACAAATATA+TGG - chr6_4:15509513-15509532 Msa0979100:intron 30.0%
TCAAATAACCTGTAACAAAC+GGG - chr6_4:15510096-15510115 Msa0979100:intron 30.0%
AGGATGTAAACATTCATTCT+CGG + chr6_4:15510148-15510167 None:intergenic 30.0%
TGATCTACTCATAAGAACTT+CGG - chr6_4:15510179-15510198 Msa0979100:intron 30.0%
!! ATGTGTTGGTAATTATCATG+AGG - chr6_4:15510211-15510230 Msa0979100:intron 30.0%
! TTCCTTGTATTTAGAGTATC+TGG - chr6_4:15510521-15510540 Msa0979100:intron 30.0%
TTTAGCCAAAAGGAAACATT+AGG + chr6_4:15510562-15510581 None:intergenic 30.0%
AATCTATTATTGCAGACATG+TGG - chr6_4:15510592-15510611 Msa0979100:CDS 30.0%
! ATACTCTTTTAGACTTGACT+TGG - chr6_4:15510765-15510784 Msa0979100:intron 30.0%
!! ATGTATAGCTTTGATCTCAA+AGG - chr6_4:15510813-15510832 Msa0979100:exon 30.0%
GAAACAAGCAAATAAAAACG+TGG + chr6_4:15510937-15510956 None:intergenic 30.0%
ACTAAGGTGACGTATAATGT+GGG + chr6_4:15504429-15504448 None:intergenic 35.0%
AACTAAGGTGACGTATAATG+TGG + chr6_4:15504430-15504449 None:intergenic 35.0%
TTTGAGAAGAAAGGAAAGAG+AGG + chr6_4:15504521-15504540 None:intergenic 35.0%
CTCTTCAAGTACATCATCAT+CGG - chr6_4:15504598-15504617 Msa0979100:three_prime_UTR 35.0%
! CCCTTTTCAATTCGTTCAAA+AGG - chr6_4:15504649-15504668 Msa0979100:three_prime_UTR 35.0%
! CCCTTTTGAACGAATTGAAA+AGG + chr6_4:15504653-15504672 None:intergenic 35.0%
CCAATAGTAAGATCATGAAC+AGG + chr6_4:15504773-15504792 None:intergenic 35.0%
CCTGTTCATGATCTTACTAT+TGG - chr6_4:15504770-15504789 Msa0979100:CDS 35.0%
!! CTTACTATTGGTGTTGAGTT+TGG - chr6_4:15504782-15504801 Msa0979100:CDS 35.0%
GCCAATTAAGCTTCAGATAT+GGG - chr6_4:15504832-15504851 Msa0979100:intron 35.0%
! TCCCATATCTGAAGCTTAAT+TGG + chr6_4:15504836-15504855 None:intergenic 35.0%
CCTAATAGAACATTCAAACC+CGG + chr6_4:15505008-15505027 None:intergenic 35.0%
ACATAAGTTAAACGTTGCAG+AGG - chr6_4:15505110-15505129 Msa0979100:intron 35.0%
ACATAAGTTAAACGTTGCAG+AGG - chr6_4:15505110-15505129 Msa0979100:intron 35.0%
AGAAATGACATTAGAGAGAG+GGG - chr6_4:15505256-15505275 Msa0979100:intron 35.0%
GAAACTATACTTAGGTGGTT+TGG - chr6_4:15505309-15505328 Msa0979100:intron 35.0%
CTTCTTACTACATAATCCAC+AGG + chr6_4:15505351-15505370 None:intergenic 35.0%
AAGTCAAATCACTAGAGGTT+GGG - chr6_4:15505389-15505408 Msa0979100:intron 35.0%
GGATCTAGAGATTAATGAGT+TGG - chr6_4:15505449-15505468 Msa0979100:intron 35.0%
! TAATGAGTTGGAGAAAGACA+TGG - chr6_4:15505461-15505480 Msa0979100:intron 35.0%
TGGTTCTTGATAGAACACTA+CGG - chr6_4:15505481-15505500 Msa0979100:intron 35.0%
ATAGAGACTAGAGAGAGTTT+AGG - chr6_4:15505666-15505685 Msa0979100:intron 35.0%
ATGAAGAGTAGATCAAACTG+AGG - chr6_4:15505770-15505789 Msa0979100:CDS 35.0%
TAGATCAAACTGAGGATAGT+TGG - chr6_4:15505778-15505797 Msa0979100:CDS 35.0%
TACAACATATCCCACTAAGT+GGG + chr6_4:15505924-15505943 None:intergenic 35.0%
ATACAACATATCCCACTAAG+TGG + chr6_4:15505925-15505944 None:intergenic 35.0%
TCACTTCGAAAGTAACACAT+TGG + chr6_4:15505976-15505995 None:intergenic 35.0%
TTGTGTAAAACTGTTTACGC+TGG - chr6_4:15506032-15506051 Msa0979100:CDS 35.0%
ACGGAGTATAATTGGGATTT+GGG + chr6_4:15506208-15506227 None:intergenic 35.0%
AACGGAGTATAATTGGGATT+TGG + chr6_4:15506209-15506228 None:intergenic 35.0%
CATATGTATGTATGTGTGTG+TGG - chr6_4:15506318-15506337 Msa0979100:intron 35.0%
AAAATAGGGGGTTTGAATGA+TGG - chr6_4:15506433-15506452 Msa0979100:intron 35.0%
AAATAGGGGGTTTGAATGAT+GGG - chr6_4:15506434-15506453 Msa0979100:intron 35.0%
TCTACATTTATACACAGGAG+TGG + chr6_4:15506505-15506524 None:intergenic 35.0%
ACTCCATAAGCAAGATTTAG+AGG - chr6_4:15506573-15506592 Msa0979100:intron 35.0%
CATCCTCTAAATCTTGCTTA+TGG + chr6_4:15506579-15506598 None:intergenic 35.0%
ATGTAGCCTATTATACGTAG+TGG - chr6_4:15506653-15506672 Msa0979100:intron 35.0%
ATACCTCAACGATCTTTAGT+GGG + chr6_4:15506719-15506738 None:intergenic 35.0%
TATACCTCAACGATCTTTAG+TGG + chr6_4:15506720-15506739 None:intergenic 35.0%
! TTGAGGTATAGAAAAAGCGT+AGG - chr6_4:15506730-15506749 Msa0979100:intron 35.0%
GAAAAAACCTTTCATCAGGA+AGG - chr6_4:15506938-15506957 Msa0979100:intron 35.0%
AAATATGCCTTCCTGATGAA+AGG + chr6_4:15506948-15506967 None:intergenic 35.0%
! TTTCATCAGGAAGGCATATT+TGG - chr6_4:15506947-15506966 Msa0979100:intron 35.0%
! TTCATCAGGAAGGCATATTT+GGG - chr6_4:15506948-15506967 Msa0979100:intron 35.0%
TGGGAGAAAAAAAAAACGTG+AGG - chr6_4:15506967-15506986 Msa0979100:intron 35.0%
! GCTATGAGCTACTGATATTT+TGG - chr6_4:15507016-15507035 Msa0979100:intron 35.0%
! TTCTCATCTTCTCTCTGAAA+TGG + chr6_4:15507156-15507175 None:intergenic 35.0%
! GAATCATTGGGTTAGGAAAT+TGG + chr6_4:15507185-15507204 None:intergenic 35.0%
ACACACAACAATAACAACCA+TGG + chr6_4:15507477-15507496 None:intergenic 35.0%
!! ATTTTAACCCATCTCCTTCA+TGG - chr6_4:15507664-15507683 Msa0979100:intron 35.0%
TAAAACCCTTTACACCATGA+AGG + chr6_4:15507681-15507700 None:intergenic 35.0%
! TTCATGGTGTAAAGGGTTTT+AGG - chr6_4:15507680-15507699 Msa0979100:intron 35.0%
GGAGTACGTTGTTTAATTGT+AGG - chr6_4:15508016-15508035 Msa0979100:intron 35.0%
TACGTTGTTTAATTGTAGGC+TGG - chr6_4:15508020-15508039 Msa0979100:intron 35.0%
ATCACTAGATCTTACTACAG+AGG - chr6_4:15508062-15508081 Msa0979100:intron 35.0%
TAGTTTATGACATTACGAGG+TGG - chr6_4:15508102-15508121 Msa0979100:intron 35.0%
AGTTTATGACATTACGAGGT+GGG - chr6_4:15508103-15508122 Msa0979100:intron 35.0%
TTCACTTTGACACACAATCA+TGG - chr6_4:15508136-15508155 Msa0979100:intron 35.0%
!! TTTGACTCCTCTAGAGTTAA+GGG + chr6_4:15508376-15508395 None:intergenic 35.0%
!! ATTTGACTCCTCTAGAGTTA+AGG + chr6_4:15508377-15508396 None:intergenic 35.0%
AGCCTCTTGTGTAAAAAACA+GGG - chr6_4:15508667-15508686 Msa0979100:intron 35.0%
!!! TACCCTGTTTTTTACACAAG+AGG + chr6_4:15508672-15508691 None:intergenic 35.0%
CTTGTGTAAAAAACAGGGTA+AGG - chr6_4:15508672-15508691 Msa0979100:intron 35.0%
!! AACTTTTAAAAAGGGCAACC+CGG + chr6_4:15508764-15508783 None:intergenic 35.0%
AACAGCAACATATAAGGTGA+GGG + chr6_4:15509029-15509048 None:intergenic 35.0%
! ACCTTATATGTTGCTGTTCT+TGG - chr6_4:15509031-15509050 Msa0979100:intron 35.0%
! CCTTATATGTTGCTGTTCTT+GGG - chr6_4:15509032-15509051 Msa0979100:intron 35.0%
! TTCTGTATTTCTATGTGTGG+TGG - chr6_4:15509182-15509201 Msa0979100:intron 35.0%
!! TAATCATTTGGCAAGTTGGT+TGG - chr6_4:15509295-15509314 Msa0979100:intron 35.0%
CGTGATTGTCATATTAGGAT+TGG + chr6_4:15509339-15509358 None:intergenic 35.0%
ATGAGCGTGATTGTCATATT+AGG + chr6_4:15509344-15509363 None:intergenic 35.0%
AATATGACAATCACGCTCAT+AGG - chr6_4:15509344-15509363 Msa0979100:intron 35.0%
ATATGACAATCACGCTCATA+GGG - chr6_4:15509345-15509364 Msa0979100:intron 35.0%
GAGCAATTTGCAAAGGAAAA+TGG - chr6_4:15509416-15509435 Msa0979100:intron 35.0%
ATTCTTCAGAACATCCAAGA+TGG - chr6_4:15509622-15509641 Msa0979100:intron 35.0%
ACTGTAGATAGTTACCTCAT+TGG + chr6_4:15509662-15509681 None:intergenic 35.0%
CAAATAACCTGTAACAAACG+GGG - chr6_4:15510097-15510116 Msa0979100:intron 35.0%
! AAATAATCCCCGTTTGTTAC+AGG + chr6_4:15510107-15510126 None:intergenic 35.0%
GGATGTAAACATTCATTCTC+GGG + chr6_4:15510147-15510166 None:intergenic 35.0%
!!! TTCGGTGTTTTCAAATGTGT+TGG - chr6_4:15510197-15510216 Msa0979100:intron 35.0%
ATCCATGCGTCTACTTTATT+TGG + chr6_4:15510277-15510296 None:intergenic 35.0%
ACATTAGGCAACAGGAAAAT+GGG + chr6_4:15510547-15510566 None:intergenic 35.0%
AACATTAGGCAACAGGAAAA+TGG + chr6_4:15510548-15510567 None:intergenic 35.0%
AAAAGGAAACATTAGGCAAC+AGG + chr6_4:15510555-15510574 None:intergenic 35.0%
! TGTTGCCTAATGTTTCCTTT+TGG - chr6_4:15510554-15510573 Msa0979100:CDS 35.0%
CAGACATGTGGTATAAAAGT+TGG - chr6_4:15510604-15510623 Msa0979100:CDS 35.0%
TGTGGTATAAAAGTTGGCTA+TGG - chr6_4:15510610-15510629 Msa0979100:CDS 35.0%
CAGTCAAATTTGTCACAAGA+AGG + chr6_4:15510839-15510858 None:intergenic 35.0%
GTGACGTATAATGTGGGTAT+AGG + chr6_4:15504423-15504442 None:intergenic 40.0%
AGATGAAACGACGTCGTTTA+GGG + chr6_4:15504555-15504574 None:intergenic 40.0%
! CGATGATGATGTACTTGAAG+AGG + chr6_4:15504600-15504619 None:intergenic 40.0%
TCCTTCAGTTCACTGATAAG+AGG - chr6_4:15504741-15504760 Msa0979100:CDS 40.0%
ACCTCTTATCAGTGAACTGA+AGG + chr6_4:15504745-15504764 None:intergenic 40.0%
GGCCAATTAAGCTTCAGATA+TGG - chr6_4:15504831-15504850 Msa0979100:intron 40.0%
! AAATTCTAGAGAGAGAGGGA+GGG + chr6_4:15504873-15504892 None:intergenic 40.0%
! AAAATTCTAGAGAGAGAGGG+AGG + chr6_4:15504874-15504893 None:intergenic 40.0%
CCGGGTTTGAATGTTCTATT+AGG - chr6_4:15505005-15505024 Msa0979100:intron 40.0%
GTTGTACTGAACAGTGTGTT+GGG - chr6_4:15505068-15505087 Msa0979100:intron 40.0%
GAAGTCAAATCACTAGAGGT+TGG - chr6_4:15505388-15505407 Msa0979100:intron 40.0%
AGTCAAATCACTAGAGGTTG+GGG - chr6_4:15505390-15505409 Msa0979100:intron 40.0%
CTTATCCCACTAAGTGAGAT+CGG + chr6_4:15505526-15505545 None:intergenic 40.0%
! TTGAGTGGTTTGGACATGTA+GGG - chr6_4:15505725-15505744 Msa0979100:intron 40.0%
ACAACATATCCCACTAAGTG+GGG + chr6_4:15505923-15505942 None:intergenic 40.0%
TGTATCAGTGTTTATACCGC+TGG - chr6_4:15505940-15505959 Msa0979100:CDS 40.0%
AAAGTAAACTCGTGTCGCAT+TGG - chr6_4:15506147-15506166 Msa0979100:intron 40.0%
ATGTATGTGTGTGTGGAGAA+TGG - chr6_4:15506325-15506344 Msa0979100:intron 40.0%
TGTATGTGTGTGTGGAGAAT+GGG - chr6_4:15506326-15506345 Msa0979100:intron 40.0%
ACCAAAAGCAGATCAGATGA+AGG - chr6_4:15506548-15506567 Msa0979100:intron 40.0%
! TCCTTCATCTGATCTGCTTT+TGG + chr6_4:15506552-15506571 None:intergenic 40.0%
! ATAGAAAAAGCGTAGGTCGT+TGG - chr6_4:15506737-15506756 Msa0979100:intron 40.0%
TGGGGAAAAAACCTTTCATC+AGG - chr6_4:15506934-15506953 Msa0979100:intron 40.0%
!! GTGAGATACGAGAAGTGTTA+AGG - chr6_4:15507058-15507077 Msa0979100:intron 40.0%
!! GATACGAGAAGTGTTAAGGA+AGG - chr6_4:15507062-15507081 Msa0979100:intron 40.0%
!! GAGAAGTGTTAAGGAAGGAT+AGG - chr6_4:15507067-15507086 Msa0979100:intron 40.0%
GCTCTGTTTAGCATCCAAAA+AGG + chr6_4:15507347-15507366 None:intergenic 40.0%
AATCTCGATCTTGACAACCA+TGG - chr6_4:15507457-15507476 Msa0979100:intron 40.0%
CTTTACACCATGAAGGAGAT+GGG + chr6_4:15507674-15507693 None:intergenic 40.0%
CATCTCCTTCATGGTGTAAA+GGG - chr6_4:15507673-15507692 Msa0979100:intron 40.0%
TCTACAAATACACCTCCATG+TGG + chr6_4:15507923-15507942 None:intergenic 40.0%
AAATCCTCCCTTAACTCTAG+AGG - chr6_4:15508366-15508385 Msa0979100:intron 40.0%
GTTGGACATCTACAAACCTT+TGG - chr6_4:15508434-15508453 Msa0979100:intron 40.0%
CAGCCTCTTGTGTAAAAAAC+AGG - chr6_4:15508666-15508685 Msa0979100:intron 40.0%
CGTACAATACACCAAATGGT+GGG - chr6_4:15508698-15508717 Msa0979100:intron 40.0%
! GTTTTCCAATCCTTTATCGG+AGG - chr6_4:15508800-15508819 Msa0979100:intron 40.0%
GTTACATCTCATCCAATGTG+CGG + chr6_4:15508916-15508935 None:intergenic 40.0%
CACTTTAGATGTCTTGTCCT+AGG - chr6_4:15508989-15509008 Msa0979100:intron 40.0%
GAACAGCAACATATAAGGTG+AGG + chr6_4:15509030-15509049 None:intergenic 40.0%
CCCAAGAACAGCAACATATA+AGG + chr6_4:15509035-15509054 None:intergenic 40.0%
! TATTTCTATGTGTGGTGGAG+TGG - chr6_4:15509187-15509206 Msa0979100:intron 40.0%
! TTCCACATTTTGTGCTGTCT+TGG + chr6_4:15509465-15509484 None:intergenic 40.0%
CCAAACTCATAATATGCTCG+AGG + chr6_4:15509542-15509561 None:intergenic 40.0%
CCTCGAGCATATTATGAGTT+TGG - chr6_4:15509539-15509558 Msa0979100:intron 40.0%
TAACCTACTGCTTATTCTGC+AGG - chr6_4:15509576-15509595 Msa0979100:intron 40.0%
ACACATCAAAGACACCATCT+TGG + chr6_4:15509639-15509658 None:intergenic 40.0%
TGTCTTTGATGTGTCCAATG+AGG - chr6_4:15509645-15509664 Msa0979100:intron 40.0%
ATTAGTTGTGATGACCGCAT+TGG - chr6_4:15509708-15509727 Msa0979100:intron 40.0%
TTCTAAACCCAGAGCCATAT+AGG + chr6_4:15509746-15509765 None:intergenic 40.0%
AGCCAAATAAAGTAGACGCA+TGG - chr6_4:15510272-15510291 Msa0979100:intron 40.0%
AAGGAAATCTTACTGGGATC+TGG - chr6_4:15510336-15510355 Msa0979100:intron 40.0%
TGTTCTGACTTTGGTAGATC+AGG + chr6_4:15510444-15510463 None:intergenic 40.0%
ATCCTACAGTCCAGATTGTA+TGG - chr6_4:15510481-15510500 Msa0979100:intron 40.0%
GGCCAGATACTCTAAATACA+AGG + chr6_4:15510526-15510545 None:intergenic 40.0%
CCAGAGATAGATTGCACAAA+AGG + chr6_4:15510733-15510752 None:intergenic 40.0%
! CCTTTTGTGCAATCTATCTC+TGG - chr6_4:15510730-15510749 Msa0979100:intron 40.0%
GATGAAACGACGTCGTTTAG+GGG + chr6_4:15504554-15504573 None:intergenic 45.0%
GAGATGAAACGACGTCGTTT+AGG + chr6_4:15504556-15504575 None:intergenic 45.0%
! GTAGTCGTACGACATGGTTT+TGG + chr6_4:15504578-15504597 None:intergenic 45.0%
TACATCATCATCGGTGACAC+AGG - chr6_4:15504607-15504626 Msa0979100:three_prime_UTR 45.0%
!!! GTTTTGATTCTCTACGGTGC+AGG - chr6_4:15504698-15504717 Msa0979100:exon 45.0%
CGTTGTACTGAACAGTGTGT+TGG - chr6_4:15505067-15505086 Msa0979100:intron 45.0%
AGTTAAACGTTGCAGAGGTG+AGG - chr6_4:15505115-15505134 Msa0979100:intron 45.0%
AGTTAAACGTTGCAGAGGTG+AGG - chr6_4:15505115-15505134 Msa0979100:intron 45.0%
!! AGAGGTGAGGATGTTGCTTT+GGG - chr6_4:15505204-15505223 Msa0979100:intron 45.0%
!! AGGATGTTGCTTTGGGTTTG+TGG - chr6_4:15505211-15505230 Msa0979100:intron 45.0%
TGACATTAGAGAGAGGGGTT+CGG - chr6_4:15505261-15505280 Msa0979100:intron 45.0%
GAGGGAAGTCAAATCACTAG+AGG - chr6_4:15505384-15505403 Msa0979100:intron 45.0%
ATGTAGCCGATCTCACTTAG+TGG - chr6_4:15505517-15505536 Msa0979100:intron 45.0%
TGTAGCCGATCTCACTTAGT+GGG - chr6_4:15505518-15505537 Msa0979100:intron 45.0%
CGATCTCACTTAGTGGGATA+AGG - chr6_4:15505524-15505543 Msa0979100:intron 45.0%
CGAGAGTAAAACAAGCGTAG+TGG - chr6_4:15505580-15505599 Msa0979100:intron 45.0%
TGGAGATGAAGATGTTGCGT+TGG - chr6_4:15505600-15505619 Msa0979100:intron 45.0%
AAGATGTTGCGTTGGATGTG+TGG - chr6_4:15505608-15505627 Msa0979100:intron 45.0%
GAAAACAGGCTTGAGTGGTT+TGG - chr6_4:15505715-15505734 Msa0979100:intron 45.0%
! CTTGAGTGGTTTGGACATGT+AGG - chr6_4:15505724-15505743 Msa0979100:intron 45.0%
ACTAAGTGGGGTTGACTACA+TGG + chr6_4:15505911-15505930 None:intergenic 45.0%
ATGTAGTCAACCCCACTTAG+TGG - chr6_4:15505910-15505929 Msa0979100:intron 45.0%
TGTAGTCAACCCCACTTAGT+GGG - chr6_4:15505911-15505930 Msa0979100:intron 45.0%
!! AAAATAAGGGTGCTGGGACA+TGG - chr6_4:15506256-15506275 Msa0979100:intron 45.0%
GATCCCACTAAAGATCGTTG+AGG - chr6_4:15506713-15506732 Msa0979100:intron 45.0%
ACTTCTCGTATCTCACTGTG+CGG + chr6_4:15507054-15507073 None:intergenic 45.0%
AGTGAGAAACGAGTCGAAAC+CGG - chr6_4:15507261-15507280 Msa0979100:intron 45.0%
!! GTGAGCCATCAGGTTGAAAA+CGG - chr6_4:15507287-15507306 Msa0979100:intron 45.0%
!! TGAGCCATCAGGTTGAAAAC+GGG - chr6_4:15507288-15507307 Msa0979100:intron 45.0%
! AGTCGGACTGAAAGCCTTTT+TGG - chr6_4:15507330-15507349 Msa0979100:CDS 45.0%
TCAAAGATCGGAGATGACGA+TGG + chr6_4:15507379-15507398 None:intergenic 45.0%
AGTTGGAGCGGTTCAAAGAT+CGG + chr6_4:15507391-15507410 None:intergenic 45.0%
CCTTTACACCATGAAGGAGA+TGG + chr6_4:15507675-15507694 None:intergenic 45.0%
CCATCTCCTTCATGGTGTAA+AGG - chr6_4:15507672-15507691 Msa0979100:intron 45.0%
ATCTTACTACAGAGGAGCAG+CGG - chr6_4:15508070-15508089 Msa0979100:intron 45.0%
TTATGACATTACGAGGTGGG+TGG - chr6_4:15508106-15508125 Msa0979100:intron 45.0%
AAGCTACAGTCAGTCACCAA+AGG + chr6_4:15508453-15508472 None:intergenic 45.0%
GTTGTTGTCATGTGACCGAA+AGG - chr6_4:15508621-15508640 Msa0979100:intron 45.0%
! TTACACAAGAGGCTGTTTCC+AGG + chr6_4:15508661-15508680 None:intergenic 45.0%
GCTGCGTACAATACACCAAA+TGG - chr6_4:15508694-15508713 Msa0979100:intron 45.0%
GCGTACAATACACCAAATGG+TGG - chr6_4:15508697-15508716 Msa0979100:intron 45.0%
TACTACAGCTCCTCCGATAA+AGG + chr6_4:15508813-15508832 None:intergenic 45.0%
! AACATGCTACTTGCAACCAG+CGG + chr6_4:15508836-15508855 None:intergenic 45.0%
GACATGAGTGACCTGATAGT+GGG + chr6_4:15508968-15508987 None:intergenic 45.0%
TATCCCTTCTTCCTTTGCTG+TGG - chr6_4:15509089-15509108 Msa0979100:intron 45.0%
TACAGAAAATAGAAGGGGGG+CGG + chr6_4:15509169-15509188 None:intergenic 45.0%
GGTGGAGTGGTTAAGTAATG+AGG - chr6_4:15509200-15509219 Msa0979100:intron 45.0%
TGCCAAGACAGCACAAAATG+TGG - chr6_4:15509460-15509479 Msa0979100:intron 45.0%
GACAGCACAAAATGTGGAAG+AGG - chr6_4:15509466-15509485 Msa0979100:intron 45.0%
AAGCCTGCAGAATAAGCAGT+AGG + chr6_4:15509582-15509601 None:intergenic 45.0%
GACGTCTCATGTTCTGACTT+TGG + chr6_4:15510453-15510472 None:intergenic 45.0%
AGCCATACAATCTGGACTGT+AGG + chr6_4:15510486-15510505 None:intergenic 45.0%
TTAGACGCAGCCATACAATC+TGG + chr6_4:15510494-15510513 None:intergenic 45.0%
!! GCATGTTGCAGCTGATTTGA+AGG - chr6_4:15510685-15510704 Msa0979100:intron 45.0%
!!! TGTATATATATTTAATTTTT+TGG - chr6_4:15506056-15506075 Msa0979100:CDS 5.0%
!! TTAAAAAAATAAAAAATTTG+AGG + chr6_4:15510058-15510077 None:intergenic 5.0%
!! TTCAAATAAATAAAATTAAA+AGG - chr6_4:15510317-15510336 Msa0979100:intron 5.0%
GAAGAGGTAGTCGTACGACA+TGG + chr6_4:15504584-15504603 None:intergenic 50.0%
ATTCTCTACGGTGCAGGTGT+AGG - chr6_4:15504704-15504723 Msa0979100:exon 50.0%
TTCTCTACGGTGCAGGTGTA+GGG - chr6_4:15504705-15504724 Msa0979100:exon 50.0%
ACTGTTCAGTACAACGCCGA+TGG + chr6_4:15505063-15505082 None:intergenic 50.0%
AGAGGTGAGGATGTTGCGTT+GGG - chr6_4:15505128-15505147 Msa0979100:intron 50.0%
CGTTGGGTGTGTGGTAAGTT+GGG - chr6_4:15505144-15505163 Msa0979100:intron 50.0%
! CAGAGGTGAGGATGTTGCTT+TGG - chr6_4:15505203-15505222 Msa0979100:intron 50.0%
GACATTAGAGAGAGGGGTTC+GGG - chr6_4:15505262-15505281 Msa0979100:intron 50.0%
GCATGCAGAGAGAAAACCTG+TGG - chr6_4:15505332-15505351 Msa0979100:intron 50.0%
TGGTGGAAAACAGGCTTGAG+TGG - chr6_4:15505710-15505729 Msa0979100:intron 50.0%
TTGGACATGTAGGGAGAAGC+AGG - chr6_4:15505734-15505753 Msa0979100:intron 50.0%
GAGGATAGTTGGACCAATCG+AGG - chr6_4:15505789-15505808 Msa0979100:CDS 50.0%
AGTTCTTCCTCTGCCTCGAT+TGG + chr6_4:15505805-15505824 None:intergenic 50.0%
!! CATTGGCTCTGATGTACCAG+CGG + chr6_4:15505959-15505978 None:intergenic 50.0%
ACTCGTGTCGCATTGGATGT+CGG - chr6_4:15506154-15506173 Msa0979100:intron 50.0%
! CCAACCCGTTTTCAACCTGA+TGG + chr6_4:15507295-15507314 None:intergenic 50.0%
!! CCATCAGGTTGAAAACGGGT+TGG - chr6_4:15507292-15507311 Msa0979100:intron 50.0%
GATCGGAGATGACGATGGAT+CGG + chr6_4:15507374-15507393 None:intergenic 50.0%
TTTGAACCGCTCCAACTCGA+TGG - chr6_4:15507394-15507413 Msa0979100:intron 50.0%
TCAACATGCCTCCATCGAGT+TGG + chr6_4:15507408-15507427 None:intergenic 50.0%
TCTTACTACAGAGGAGCAGC+GGG - chr6_4:15508071-15508090 Msa0979100:intron 50.0%
!! GACTCCTCTAGAGTTAAGGG+AGG + chr6_4:15508373-15508392 None:intergenic 50.0%
CAATCCATGAGGGGTAACCT+TGG - chr6_4:15508585-15508604 Msa0979100:intron 50.0%
CAACTTTACCAGTTGCGCCA+AGG + chr6_4:15508605-15508624 None:intergenic 50.0%
GTCATGTGACCGAAAGGTCA+CGG - chr6_4:15508627-15508646 Msa0979100:intron 50.0%
TCATGTGACCGAAAGGTCAC+GGG - chr6_4:15508628-15508647 Msa0979100:intron 50.0%
GACTTGAACCCGTGACCTTT+CGG + chr6_4:15508639-15508658 None:intergenic 50.0%
CAGCTCCTCCGATAAAGGAT+TGG + chr6_4:15508808-15508827 None:intergenic 50.0%
ATGTGTTGAGAGCCGCACAT+TGG - chr6_4:15508901-15508920 Msa0979100:intron 50.0%
CGACATGAGTGACCTGATAG+TGG + chr6_4:15508969-15508988 None:intergenic 50.0%
ATGTCTTGTCCTAGGCGTGA+GGG - chr6_4:15508997-15509016 Msa0979100:intron 50.0%
GGACCACAGCAAAGGAAGAA+GGG + chr6_4:15509095-15509114 None:intergenic 50.0%
AAATAGAAGGGGGGCGGAAT+TGG + chr6_4:15509163-15509182 None:intergenic 50.0%
!! CAAGTTGGTTGGAAGATGCG+CGG - chr6_4:15509306-15509325 Msa0979100:intron 50.0%
AGTGTGATCTGTCTCACCGA+AGG - chr6_4:15509372-15509391 Msa0979100:intron 50.0%
GTGTGATCTGTCTCACCGAA+GGG - chr6_4:15509373-15509392 Msa0979100:intron 50.0%
AGAGCCATATAGGTGTGGCA+TGG + chr6_4:15509736-15509755 None:intergenic 50.0%
ATGCCACACCTATATGGCTC+TGG - chr6_4:15509735-15509754 Msa0979100:intron 50.0%
TGCCACACCTATATGGCTCT+GGG - chr6_4:15509736-15509755 Msa0979100:intron 50.0%
AACCCAGAGCCATATAGGTG+TGG + chr6_4:15509741-15509760 None:intergenic 50.0%
AATCATGCAGTCGCCTATCG+TGG - chr6_4:15510370-15510389 Msa0979100:intron 50.0%
GTCATCCGATCTTGATCCGT+GGG + chr6_4:15510396-15510415 None:intergenic 50.0%
AGTCATCCGATCTTGATCCG+TGG + chr6_4:15510397-15510416 None:intergenic 50.0%
AGAGATGGAACTGTTGCTGC+AGG - chr6_4:15510658-15510677 Msa0979100:CDS 50.0%
! TTCTAGAGAGAGAGGGAGGG+AGG + chr6_4:15504870-15504889 None:intergenic 55.0%
CAGAGGTGAGGATGTTGCGT+TGG - chr6_4:15505127-15505146 Msa0979100:intron 55.0%
AGGATGTTGCGTTGGGTGTG+TGG - chr6_4:15505135-15505154 Msa0979100:intron 55.0%
GCGTTGGGTGTGTGGTAAGT+TGG - chr6_4:15505143-15505162 Msa0979100:intron 55.0%
ACTAGAGGTTGGGGAAGACC+TGG - chr6_4:15505399-15505418 Msa0979100:intron 55.0%
AGTTGGACCAATCGAGGCAG+AGG - chr6_4:15505795-15505814 Msa0979100:CDS 55.0%
TGGGACATGGCTGTGAGCAA+GGG - chr6_4:15506269-15506288 Msa0979100:intron 55.0%
AAACCGGCATGTGAGCCATC+AGG - chr6_4:15507277-15507296 Msa0979100:intron 55.0%
CAACCTGATGGCTCACATGC+CGG + chr6_4:15507283-15507302 None:intergenic 55.0%
!! GAAAACGGGTTGGCTTGCCT+TGG - chr6_4:15507302-15507321 Msa0979100:CDS 55.0%
TTCAGTCCGACTTCGAGCCA+AGG + chr6_4:15507322-15507341 None:intergenic 55.0%
!! ATGCCTCCATCGAGTTGGAG+CGG + chr6_4:15507403-15507422 None:intergenic 55.0%
CTTACTACAGAGGAGCAGCG+GGG - chr6_4:15508072-15508091 Msa0979100:intron 55.0%
TTACTACAGAGGAGCAGCGG+GGG - chr6_4:15508073-15508092 Msa0979100:intron 55.0%
AAGGTCACGGGTTCAAGTCC+TGG - chr6_4:15508640-15508659 Msa0979100:intron 55.0%
! CAAATGGTGGGAACCCTTCC+CGG - chr6_4:15508710-15508729 Msa0979100:intron 55.0%
CTGAAGCTCCCGCATATGCA+GGG + chr6_4:15508737-15508756 None:intergenic 55.0%
ACTGAAGCTCCCGCATATGC+AGG + chr6_4:15508738-15508757 None:intergenic 55.0%
!! GTAAGAGGCGTCCCACTATC+AGG - chr6_4:15508954-15508973 Msa0979100:intron 55.0%
GATGTCTTGTCCTAGGCGTG+AGG - chr6_4:15508996-15509015 Msa0979100:intron 55.0%
TGTCTTGTCCTAGGCGTGAG+GGG - chr6_4:15508998-15509017 Msa0979100:intron 55.0%
GGGACCACAGCAAAGGAAGA+AGG + chr6_4:15509096-15509115 None:intergenic 55.0%
TGTTTGGGGGACCACAGCAA+AGG + chr6_4:15509103-15509122 None:intergenic 55.0%
CCTCTTTGCTCACTGCCCTT+CGG + chr6_4:15509391-15509410 None:intergenic 55.0%
AAGGGCAGTGAGCAAAGAGG+AGG - chr6_4:15509391-15509410 Msa0979100:intron 55.0%
AGGGCAGTGAGCAAAGAGGA+GGG - chr6_4:15509392-15509411 Msa0979100:intron 55.0%
GGAGGGGGAGCAATTTGCAA+AGG - chr6_4:15509409-15509428 Msa0979100:intron 55.0%
! GGTGCCATGCCACACCTATA+TGG - chr6_4:15509729-15509748 Msa0979100:intron 55.0%
GTTGGCTATGGACGTCCACA+AGG - chr6_4:15510622-15510641 Msa0979100:CDS 55.0%
TTCCATCTCTGCCTCCTGCT+TGG + chr6_4:15510648-15510667 None:intergenic 55.0%
GATGGAACTGTTGCTGCAGG+AGG - chr6_4:15510661-15510680 Msa0979100:CDS 55.0%
CTGGGACATGGCTGTGAGCA+AGG - chr6_4:15506268-15506287 Msa0979100:intron 60.0%
! GGCTTGCCTTGGCTCGAAGT+CGG - chr6_4:15507313-15507332 Msa0979100:CDS 60.0%
CGGAGATGACGATGGATCGG+CGG + chr6_4:15507371-15507390 None:intergenic 60.0%
GAACCGCTCCAACTCGATGG+AGG - chr6_4:15507397-15507416 Msa0979100:intron 60.0%
! TGGAGGCATGTTGAAGCGCG+AGG - chr6_4:15507414-15507433 Msa0979100:intron 60.0%
TGCGCCAAGGTTACCCCTCA+TGG + chr6_4:15508592-15508611 None:intergenic 60.0%
AGGGGTAACCTTGGCGCAAC+TGG - chr6_4:15508594-15508613 Msa0979100:intron 60.0%
CGGGAAGGGTTCCCACCATT+TGG + chr6_4:15508712-15508731 None:intergenic 60.0%
GCATATGCAGGGTCCGGGAA+GGG + chr6_4:15508726-15508745 None:intergenic 60.0%
CTTCCCGGACCCTGCATATG+CGG - chr6_4:15508725-15508744 Msa0979100:intron 60.0%
TTCCCGGACCCTGCATATGC+GGG - chr6_4:15508726-15508745 Msa0979100:intron 60.0%
ATGCGGGAGCTTCAGTGCAC+CGG - chr6_4:15508742-15508761 Msa0979100:intron 60.0%
CCGAAGGGCAGTGAGCAAAG+AGG - chr6_4:15509388-15509407 Msa0979100:intron 60.0%
GGGCAGTGAGCAAAGAGGAG+GGG - chr6_4:15509393-15509412 Msa0979100:intron 60.0%
GGCAGTGAGCAAAGAGGAGG+GGG - chr6_4:15509394-15509413 Msa0979100:intron 60.0%
GGTGTGGCATGGCACCAATG+CGG + chr6_4:15509725-15509744 None:intergenic 60.0%
CTTGATCCGTGGGCCACGAT+AGG + chr6_4:15510386-15510405 None:intergenic 60.0%
CGTGGCCCACGGATCAAGAT+CGG - chr6_4:15510388-15510407 Msa0979100:intron 60.0%
CGCATATGCAGGGTCCGGGA+AGG + chr6_4:15508727-15508746 None:intergenic 65.0%
CTCCCGCATATGCAGGGTCC+GGG + chr6_4:15508731-15508750 None:intergenic 65.0%
GCTCCCGCATATGCAGGGTC+CGG + chr6_4:15508732-15508751 None:intergenic 65.0%
TGCGGGAGCTTCAGTGCACC+GGG - chr6_4:15508743-15508762 Msa0979100:intron 65.0%
CGGAGGAGCTGTAGTACCGC+TGG - chr6_4:15508817-15508836 Msa0979100:intron 65.0%
CAGTCGCCTATCGTGGCCCA+CGG - chr6_4:15510377-15510396 Msa0979100:intron 65.0%
GGACGTCCACAAGGCCAAGC+AGG - chr6_4:15510631-15510650 Msa0979100:CDS 65.0%
CGTCCACAAGGCCAAGCAGG+AGG - chr6_4:15510634-15510653 Msa0979100:CDS 65.0%
!! CTGCCTCCTGCTTGGCCTTG+TGG + chr6_4:15510640-15510659 None:intergenic 65.0%
GGCCAAGCAGGAGGCAGAGA+TGG - chr6_4:15510643-15510662 Msa0979100:CDS 65.0%
GGGACACACCCCTCACGCCT+AGG + chr6_4:15509009-15509028 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 15504418 15510995 15504418 ID=Msa0979100;Name=Msa0979100
chr6_4 mRNA 15504418 15510995 15504418 ID=Msa0979100-mRNA-1;Parent=Msa0979100;Name=Msa0979100-mRNA-1;_AED=0.06;_eAED=0.06;_QI=165|1|1|1|1|1|6|296|211
chr6_4 exon 15504418 15504806 15504418 ID=Msa0979100-mRNA-1:exon:5073;Parent=Msa0979100-mRNA-1
chr6_4 exon 15505747 15505815 15505747 ID=Msa0979100-mRNA-1:exon:5072;Parent=Msa0979100-mRNA-1
chr6_4 exon 15505926 15506130 15505926 ID=Msa0979100-mRNA-1:exon:5071;Parent=Msa0979100-mRNA-1
chr6_4 exon 15507293 15507375 15507293 ID=Msa0979100-mRNA-1:exon:5070;Parent=Msa0979100-mRNA-1
chr6_4 exon 15510554 15510693 15510554 ID=Msa0979100-mRNA-1:exon:5069;Parent=Msa0979100-mRNA-1
chr6_4 exon 15510785 15510995 15510785 ID=Msa0979100-mRNA-1:exon:5068;Parent=Msa0979100-mRNA-1
chr6_4 five_prime_UTR 15510831 15510995 15510831 ID=Msa0979100-mRNA-1:five_prime_utr;Parent=Msa0979100-mRNA-1
chr6_4 CDS 15510785 15510830 15510785 ID=Msa0979100-mRNA-1:cds;Parent=Msa0979100-mRNA-1
chr6_4 CDS 15510554 15510693 15510554 ID=Msa0979100-mRNA-1:cds;Parent=Msa0979100-mRNA-1
chr6_4 CDS 15507293 15507375 15507293 ID=Msa0979100-mRNA-1:cds;Parent=Msa0979100-mRNA-1
chr6_4 CDS 15505926 15506130 15505926 ID=Msa0979100-mRNA-1:cds;Parent=Msa0979100-mRNA-1
chr6_4 CDS 15505747 15505815 15505747 ID=Msa0979100-mRNA-1:cds;Parent=Msa0979100-mRNA-1
chr6_4 CDS 15504714 15504806 15504714 ID=Msa0979100-mRNA-1:cds;Parent=Msa0979100-mRNA-1
chr6_4 three_prime_UTR 15504418 15504713 15504418 ID=Msa0979100-mRNA-1:three_prime_utr;Parent=Msa0979100-mRNA-1
Gene Sequence

>Msa0979100

ATGTCGTACGACTACCTCTTCAAGTACATCATCATCGGTGACACAGGTGTAGGGAAATCTTGTTTGCTCCTTCAGTTCACTGATAAGAGGTTTCAACCTGTTCATGATCTTACTATTGGTGTTGAGTTTGGTGCTCGTATGCTTACTATTGATTCTAGGCCAATTAAGCTTCAGATATGGGATACTGCTGGCCAAGAATCTTTTAGATCAATCACTAGATCTTACTACAGAGGAGCAGCGGGGGCGCTTCTAGTTTATGACATTACGAGGAGAGAGACATTTAATCATTTGGCAAGTTGGTTGGAAGATGCGCGGCAGCATGCCAATCCTAATATGACAATCACGCTCATAGGGAACAAGTGTGATCTGTCTCACCGAAGGGCAGTGAGCAAAGAGGAGGGGGAGCAATTTGCAAAGGAAAATGGACTTTTATTCATGGAGGCTTCTGCCAAGACAGCACAAAATGTGGAAGAGGCTTTCATAAAGACTGCTGCAAAGATTCTTCAGAACATCCAAGATGGTGTCTTTGATGTGTCCAATGAGACATGTGGTATAAAAGTTGGCTATGGACGTCCACAAGGCCAAGCAGGAGGCAGAGATGGAACTGTTGCTGCAGGAGGTGCATGTTGCAGCTGA
Protein sequence

>Msa0979100

MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMLTIDSRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTITLIGNKCDLSHRRAVSKEEGEQFAKENGLLFMEASAKTAQNVEEAFIKTAAKILQNIQDGVFDVSNETCGIKVGYGRPQGQAGGRDGTVAAGGACCS*