Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1438300 | XP_003629971.1 | 86.878 | 221 | 9 | 1 | 1 | 201 | 3 | 223 | 5.42e-133 | 391 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1438300 | sp|Q8RXJ0|NUF2_ARATH | 44.292 | 219 | 101 | 3 | 1 | 200 | 1 | 217 | 8.54e-56 | 185 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1438300 | G7L8V7 | 86.878 | 221 | 9 | 1 | 1 | 201 | 3 | 223 | 2.59e-133 | 391 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0018920 | Msa1438300 | 0.814851 | 1.247931e-51 | -8.615850e-47 |
| Msa0027800 | Msa1438300 | 0.811342 | 7.346939e-51 | -8.615850e-47 |
| Msa0032980 | Msa1438300 | 0.808303 | 3.308708e-50 | -8.615850e-47 |
| Msa0040640 | Msa1438300 | 0.807193 | 5.697105e-50 | -8.615850e-47 |
| Msa0078130 | Msa1438300 | 0.805563 | 1.256726e-49 | -8.615850e-47 |
| Msa0091350 | Msa1438300 | 0.820697 | 5.981774e-53 | -8.615850e-47 |
| Msa1361930 | Msa1438300 | 0.801312 | 9.554570e-49 | -8.615850e-47 |
| Msa1365500 | Msa1438300 | 0.804983 | 1.662058e-49 | -8.615850e-47 |
| Msa1393560 | Msa1438300 | 0.815650 | 8.291146e-52 | -8.615850e-47 |
| Msa1406720 | Msa1438300 | 0.807040 | 6.137879e-50 | -8.615850e-47 |
| Msa1426320 | Msa1438300 | 0.831023 | 2.110939e-55 | -8.615850e-47 |
| Msa1438300 | Msa1457840 | 0.800069 | 1.713317e-48 | -8.615850e-47 |
| Msa0648040 | Msa1438300 | 0.805841 | 1.098805e-49 | -8.615850e-47 |
| Msa0657210 | Msa1438300 | 0.805009 | 1.641918e-49 | -8.615850e-47 |
| Msa0657700 | Msa1438300 | 0.852988 | 3.215288e-61 | -8.615850e-47 |
| Msa0664070 | Msa1438300 | 0.813979 | 1.945841e-51 | -8.615850e-47 |
| Msa0690740 | Msa1438300 | 0.806276 | 8.897591e-50 | -8.615850e-47 |
| Msa0701250 | Msa1438300 | 0.810326 | 1.218761e-50 | -8.615850e-47 |
| Msa0702810 | Msa1438300 | 0.808954 | 2.402517e-50 | -8.615850e-47 |
| Msa0713920 | Msa1438300 | 0.820365 | 7.128221e-53 | -8.615850e-47 |
| Msa0714520 | Msa1438300 | 0.804222 | 2.396320e-49 | -8.615850e-47 |
| Msa0717900 | Msa1438300 | 0.806968 | 6.357712e-50 | -8.615850e-47 |
| Msa0828970 | Msa1438300 | 0.816291 | 5.965035e-52 | -8.615850e-47 |
| Msa0127340 | Msa1438300 | 0.800003 | 1.766801e-48 | -8.615850e-47 |
| Msa0156090 | Msa1438300 | 0.806097 | 9.704790e-50 | -8.615850e-47 |
| Msa0165830 | Msa1438300 | 0.807574 | 4.730405e-50 | -8.615850e-47 |
| Msa0184700 | Msa1438300 | 0.803839 | 2.877842e-49 | -8.615850e-47 |
| Msa0186360 | Msa1438300 | 0.802739 | 4.862857e-49 | -8.615850e-47 |
| Msa1254420 | Msa1438300 | 0.808483 | 3.029125e-50 | -8.615850e-47 |
| Msa1254540 | Msa1438300 | 0.800853 | 1.185912e-48 | -8.615850e-47 |
| Msa1263740 | Msa1438300 | 0.832238 | 1.059735e-55 | -8.615850e-47 |
| Msa1266690 | Msa1438300 | 0.818753 | 1.662848e-52 | -8.615850e-47 |
| Msa1267930 | Msa1438300 | 0.810098 | 1.364366e-50 | -8.615850e-47 |
| Msa1268540 | Msa1438300 | 0.831008 | 2.129502e-55 | -8.615850e-47 |
| Msa1294460 | Msa1438300 | 0.801771 | 7.692206e-49 | -8.615850e-47 |
| Msa1294790 | Msa1438300 | 0.824051 | 9.950070e-54 | -8.615850e-47 |
| Msa1300460 | Msa1438300 | 0.812032 | 5.199065e-51 | -8.615850e-47 |
| Msa1305920 | Msa1438300 | 0.817746 | 2.810125e-52 | -8.615850e-47 |
| Msa1332950 | Msa1438300 | 0.817792 | 2.743880e-52 | -8.615850e-47 |
| Msa1333360 | Msa1438300 | 0.810597 | 1.065163e-50 | -8.615850e-47 |
| Msa1339170 | Msa1438300 | 0.808374 | 3.195518e-50 | -8.615850e-47 |
| Msa0368860 | Msa1438300 | 0.805775 | 1.134525e-49 | -8.615850e-47 |
| Msa0421750 | Msa1438300 | 0.816433 | 5.544426e-52 | -8.615850e-47 |
| Msa0462780 | Msa1438300 | 0.812867 | 3.416111e-51 | -8.615850e-47 |
| Msa0466520 | Msa1438300 | 0.811070 | 8.413161e-51 | -8.615850e-47 |
| Msa0467690 | Msa1438300 | 0.801668 | 8.079156e-49 | -8.615850e-47 |
| Msa1213830 | Msa1438300 | 0.815684 | 8.149456e-52 | -8.615850e-47 |
| Msa1218820 | Msa1438300 | 0.811822 | 5.776961e-51 | -8.615850e-47 |
| Msa0504720 | Msa1438300 | 0.800499 | 1.400807e-48 | -8.615850e-47 |
| Msa0514020 | Msa1438300 | 0.819812 | 9.541492e-53 | -8.615850e-47 |
| Msa0527850 | Msa1438300 | 0.812488 | 4.135205e-51 | -8.615850e-47 |
| Msa0541740 | Msa1438300 | 0.810055 | 1.393905e-50 | -8.615850e-47 |
| Msa0563900 | Msa1438300 | 0.804671 | 1.931038e-49 | -8.615850e-47 |
| Msa0572830 | Msa1438300 | 0.810395 | 1.177724e-50 | -8.615850e-47 |
| Msa0582460 | Msa1438300 | 0.803050 | 4.194230e-49 | -8.615850e-47 |
| Msa0586200 | Msa1438300 | 0.807421 | 5.095895e-50 | -8.615850e-47 |
| Msa0879920 | Msa1438300 | 0.800709 | 1.269141e-48 | -8.615850e-47 |
| Msa0926310 | Msa1438300 | 0.802452 | 5.573585e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1438300 | MtrunA17_Chr8g0380721 | 86.878 | 221 | 9 | 1 | 1 | 201 | 3 | 223 | 4.98e-137 | 391 |
| Msa1438300 | MtrunA17_Chr8g0380701 | 59.794 | 194 | 56 | 2 | 28 | 201 | 5 | 196 | 7.91e-74 | 224 |
| Msa1438300 | MtrunA17_Chr4g0025021 | 74.615 | 130 | 33 | 0 | 1 | 130 | 1 | 130 | 3.72e-69 | 207 |
| Msa1438300 | MtrunA17_Chr4g0025011 | 51.282 | 117 | 26 | 3 | 116 | 201 | 5 | 121 | 2.21e-24 | 94.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1438300 | AT1G61000.1 | 44.292 | 219 | 101 | 3 | 1 | 200 | 1 | 217 | 8.68e-57 | 185 |
Find 46 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAGGAGTTGAACTATTTC+TGG | 0.108708 | tig0028533:-53140 | None:intergenic |
| ATCCAAAACGACGCCGGTTC+TGG | 0.244271 | tig0028533:-53207 | None:intergenic |
| ATGACATCTGTTTATTGTTC+AGG | 0.250147 | tig0028533:-53971 | None:intergenic |
| AAGTTGAATGTGTATTTCTT+AGG | 0.261839 | tig0028533:-53493 | None:intergenic |
| CCCCAGAACCGGCGTCGTTT+TGG | 0.274787 | tig0028533:+53205 | Msa1438300:CDS |
| TACTAAACACTATAAAAGTT+TGG | 0.288459 | tig0028533:+52982 | Msa1438300:five_prime_UTR |
| TGGCAATTTGAAAGTTGTTT+AGG | 0.327054 | tig0028533:-53157 | None:intergenic |
| TATTTCTGGGCGACGAAGCC+TGG | 0.337312 | tig0028533:-53126 | None:intergenic |
| TCCAAAACGACGCCGGTTCT+GGG | 0.404325 | tig0028533:-53206 | None:intergenic |
| TTCTCAATTTCTGTCTCGAC+AGG | 0.407777 | tig0028533:+53569 | Msa1438300:CDS |
| AACTCGGTTCGATGAGGATC+AGG | 0.411529 | tig0028533:-53532 | None:intergenic |
| GACTGTGGAAATGGATGATA+AGG | 0.411995 | tig0028533:+54025 | Msa1438300:CDS |
| ACTAAACACTATAAAAGTTT+GGG | 0.431753 | tig0028533:+52983 | Msa1438300:five_prime_UTR |
| GACCTCTCCAACCCCAGAAC+CGG | 0.432944 | tig0028533:+53194 | Msa1438300:CDS |
| TTAGGAGTTGAACTATTTCT+GGG | 0.443565 | tig0028533:-53139 | None:intergenic |
| GAAGGAGAGGACTGTGGAAA+TGG | 0.451566 | tig0028533:+54016 | Msa1438300:CDS |
| AAGTACTATAAAGAAGTTGA+AGG | 0.454355 | tig0028533:+53998 | Msa1438300:CDS |
| ATTTCTGGGCGACGAAGCCT+GGG | 0.463415 | tig0028533:-53125 | None:intergenic |
| ATGGATCCAACGTGAAGATC+AGG | 0.466945 | tig0028533:-53415 | None:intergenic |
| CTCCTCTCCTCTGCGATGTA+CGG | 0.489583 | tig0028533:-52943 | None:intergenic |
| AACGACGCCGGTTCTGGGGT+TGG | 0.494116 | tig0028533:-53201 | None:intergenic |
| AATGCGATATCAGAAATTGT+AGG | 0.523805 | tig0028533:+53701 | Msa1438300:CDS |
| GTAAAGCTTGATAGCGTGAA+TGG | 0.532383 | tig0028533:-53434 | None:intergenic |
| TATCTTCTTCAACCGCTACT+CGG | 0.533638 | tig0028533:-53081 | None:intergenic |
| TGTAGGCGAATTCAACGCGT+TGG | 0.538926 | tig0028533:+53718 | Msa1438300:CDS |
| CAAGCTTTACAACAAGATCA+AGG | 0.542989 | tig0028533:+53447 | Msa1438300:CDS |
| GGAGAGGTCGTTCTCTGTAA+CGG | 0.551483 | tig0028533:-53180 | None:intergenic |
| AACACTATAAAAGTTTGGGC+GGG | 0.559299 | tig0028533:+52987 | Msa1438300:five_prime_UTR |
| GAGGTCGTTCTCTGTAACGG+TGG | 0.563344 | tig0028533:-53177 | None:intergenic |
| GAAGTTGAAGGAGAGGACTG+TGG | 0.566165 | tig0028533:+54010 | Msa1438300:CDS |
| CGCCGGTTCTGGGGTTGGAG+AGG | 0.567983 | tig0028533:-53196 | None:intergenic |
| AAACACTATAAAAGTTTGGG+CGG | 0.582211 | tig0028533:+52986 | Msa1438300:five_prime_UTR |
| GGAGAAAATCGAGGTAGTTG+AGG | 0.585716 | tig0028533:-53244 | None:intergenic |
| CTATAAAGAAGTTGAAGGAG+AGG | 0.589917 | tig0028533:+54003 | Msa1438300:CDS |
| ATCCGTACATCGCAGAGGAG+AGG | 0.604853 | tig0028533:+52941 | None:intergenic |
| CCAAAACGACGCCGGTTCTG+GGG | 0.606248 | tig0028533:-53205 | None:intergenic |
| TGAAGAGAATAAGATTACAC+AGG | 0.606538 | tig0028533:+53760 | Msa1438300:CDS |
| GAGAATCCTGATCTTCACGT+TGG | 0.626453 | tig0028533:+53409 | Msa1438300:CDS |
| TGTCGAACTACGAATACCCC+AGG | 0.633001 | tig0028533:+53108 | Msa1438300:CDS |
| GTAGAGATCCAAAACGACGC+CGG | 0.633388 | tig0028533:-53213 | None:intergenic |
| ATTTCTCACAGCGAAGACAA+CGG | 0.661952 | tig0028533:+53355 | Msa1438300:intron |
| CAATTTCTGAGTCCGAGTAG+CGG | 0.664467 | tig0028533:+53069 | Msa1438300:five_prime_UTR |
| AGAAATTGAGAAGAGCACCA+AGG | 0.704362 | tig0028533:-53558 | None:intergenic |
| GTTACTCGTGGAGAAAATCG+AGG | 0.705965 | tig0028533:-53253 | None:intergenic |
| TTTCTGGGCGACGAAGCCTG+GGG | 0.708948 | tig0028533:-53124 | None:intergenic |
| ATTTGATCCGTACATCGCAG+AGG | 0.709800 | tig0028533:+52936 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCAAAAATTTAACAATT+AGG | - | tig0028533:53664-53683 | None:intergenic | 10.0% |
| !!! | TTTTCAAAAATTTAACAATT+AGG | - | tig0028533:53664-53683 | None:intergenic | 10.0% |
| !!! | TTGTTAAATTTTTGAAAATC+AGG | + | tig0028533:53666-53685 | Msa1438300:intron | 15.0% |
| !!! | TGTTAAATTTTTGAAAATCA+GGG | + | tig0028533:53667-53686 | Msa1438300:intron | 15.0% |
| !!! | TTGTTAAATTTTTGAAAATC+AGG | + | tig0028533:53666-53685 | Msa1438300:intron | 15.0% |
| !!! | TGTTAAATTTTTGAAAATCA+GGG | + | tig0028533:53667-53686 | Msa1438300:intron | 15.0% |
| !! | TACTAAACACTATAAAAGTT+TGG | + | tig0028533:52982-53001 | Msa1438300:five_prime_UTR | 20.0% |
| !! | ACTAAACACTATAAAAGTTT+GGG | + | tig0028533:52983-53002 | Msa1438300:five_prime_UTR | 20.0% |
| !!! | ATTTTGAATTTTGAATCACA+CGG | + | tig0028533:53031-53050 | Msa1438300:five_prime_UTR | 20.0% |
| !!! | TTTTAATTTTATGTGTGTGT+TGG | + | tig0028533:53806-53825 | Msa1438300:intron | 20.0% |
| !! | TACTAAACACTATAAAAGTT+TGG | + | tig0028533:52982-53001 | Msa1438300:five_prime_UTR | 20.0% |
| !! | ACTAAACACTATAAAAGTTT+GGG | + | tig0028533:52983-53002 | Msa1438300:five_prime_UTR | 20.0% |
| !!! | ATTTTGAATTTTGAATCACA+CGG | + | tig0028533:53031-53050 | Msa1438300:five_prime_UTR | 20.0% |
| !!! | TTTTAATTTTATGTGTGTGT+TGG | + | tig0028533:53806-53825 | Msa1438300:intron | 20.0% |
| ! | AAGTTGAATGTGTATTTCTT+AGG | - | tig0028533:53496-53515 | None:intergenic | 25.0% |
| !! | AACAATTAGGTCATGTTTTA+GGG | - | tig0028533:53651-53670 | None:intergenic | 25.0% |
| !! | TAACAATTAGGTCATGTTTT+AGG | - | tig0028533:53652-53671 | None:intergenic | 25.0% |
| !!! | AAATTTTTGAAAATCAGGGA+TGG | + | tig0028533:53671-53690 | Msa1438300:intron | 25.0% |
| !!! | AATTTTTGAAAATCAGGGAT+GGG | + | tig0028533:53672-53691 | Msa1438300:intron | 25.0% |
| ! | CATTCTGTTATAGTTGAAAT+TGG | + | tig0028533:53855-53874 | Msa1438300:intron | 25.0% |
| ! | AAGTACTATAAAGAAGTTGA+AGG | + | tig0028533:53998-54017 | Msa1438300:CDS | 25.0% |
| ! | AAGTTGAATGTGTATTTCTT+AGG | - | tig0028533:53496-53515 | None:intergenic | 25.0% |
| !! | AACAATTAGGTCATGTTTTA+GGG | - | tig0028533:53651-53670 | None:intergenic | 25.0% |
| !! | TAACAATTAGGTCATGTTTT+AGG | - | tig0028533:53652-53671 | None:intergenic | 25.0% |
| !!! | AAATTTTTGAAAATCAGGGA+TGG | + | tig0028533:53671-53690 | Msa1438300:intron | 25.0% |
| !!! | AATTTTTGAAAATCAGGGAT+GGG | + | tig0028533:53672-53691 | Msa1438300:intron | 25.0% |
| ! | CATTCTGTTATAGTTGAAAT+TGG | + | tig0028533:53855-53874 | Msa1438300:intron | 25.0% |
| ! | AAGTACTATAAAGAAGTTGA+AGG | + | tig0028533:53998-54017 | Msa1438300:CDS | 25.0% |
| AAACACTATAAAAGTTTGGG+CGG | + | tig0028533:52986-53005 | Msa1438300:five_prime_UTR | 30.0% | |
| ! | TTAGGAGTTGAACTATTTCT+GGG | - | tig0028533:53142-53161 | None:intergenic | 30.0% |
| TTTAGGAGTTGAACTATTTC+TGG | - | tig0028533:53143-53162 | None:intergenic | 30.0% | |
| TGGCAATTTGAAAGTTGTTT+AGG | - | tig0028533:53160-53179 | None:intergenic | 30.0% | |
| GAATTGAAGATTGAAGAGAA+GGG | - | tig0028533:53288-53307 | None:intergenic | 30.0% | |
| TGAATTGAAGATTGAAGAGA+AGG | - | tig0028533:53289-53308 | None:intergenic | 30.0% | |
| ! | TCTTCATGATTTTGCAGAAA+TGG | - | tig0028533:53617-53636 | None:intergenic | 30.0% |
| !! | ACAATTAGGTCATGTTTTAG+GGG | - | tig0028533:53650-53669 | None:intergenic | 30.0% |
| AATGCGATATCAGAAATTGT+AGG | + | tig0028533:53701-53720 | Msa1438300:CDS | 30.0% | |
| TGAAGAGAATAAGATTACAC+AGG | + | tig0028533:53760-53779 | Msa1438300:CDS | 30.0% | |
| !! | TTTTATGTGTGTGTTGGTAT+TGG | + | tig0028533:53812-53831 | Msa1438300:intron | 30.0% |
| ATGACATCTGTTTATTGTTC+AGG | - | tig0028533:53974-53993 | None:intergenic | 30.0% | |
| AAACACTATAAAAGTTTGGG+CGG | + | tig0028533:52986-53005 | Msa1438300:five_prime_UTR | 30.0% | |
| ! | TTAGGAGTTGAACTATTTCT+GGG | - | tig0028533:53142-53161 | None:intergenic | 30.0% |
| TTTAGGAGTTGAACTATTTC+TGG | - | tig0028533:53143-53162 | None:intergenic | 30.0% | |
| TGGCAATTTGAAAGTTGTTT+AGG | - | tig0028533:53160-53179 | None:intergenic | 30.0% | |
| GAATTGAAGATTGAAGAGAA+GGG | - | tig0028533:53288-53307 | None:intergenic | 30.0% | |
| TGAATTGAAGATTGAAGAGA+AGG | - | tig0028533:53289-53308 | None:intergenic | 30.0% | |
| ! | TCTTCATGATTTTGCAGAAA+TGG | - | tig0028533:53617-53636 | None:intergenic | 30.0% |
| !! | ACAATTAGGTCATGTTTTAG+GGG | - | tig0028533:53650-53669 | None:intergenic | 30.0% |
| AATGCGATATCAGAAATTGT+AGG | + | tig0028533:53701-53720 | Msa1438300:CDS | 30.0% | |
| TGAAGAGAATAAGATTACAC+AGG | + | tig0028533:53760-53779 | Msa1438300:CDS | 30.0% | |
| !! | TTTTATGTGTGTGTTGGTAT+TGG | + | tig0028533:53812-53831 | Msa1438300:intron | 30.0% |
| ATGACATCTGTTTATTGTTC+AGG | - | tig0028533:53974-53993 | None:intergenic | 30.0% | |
| AACACTATAAAAGTTTGGGC+GGG | + | tig0028533:52987-53006 | Msa1438300:five_prime_UTR | 35.0% | |
| AAGATTGAAGAGAAGGGAAA+GGG | - | tig0028533:53282-53301 | None:intergenic | 35.0% | |
| CAAGCTTTACAACAAGATCA+AGG | + | tig0028533:53447-53466 | Msa1438300:CDS | 35.0% | |
| CTATAAAGAAGTTGAAGGAG+AGG | + | tig0028533:54003-54022 | Msa1438300:CDS | 35.0% | |
| AACACTATAAAAGTTTGGGC+GGG | + | tig0028533:52987-53006 | Msa1438300:five_prime_UTR | 35.0% | |
| AAGATTGAAGAGAAGGGAAA+GGG | - | tig0028533:53282-53301 | None:intergenic | 35.0% | |
| CAAGCTTTACAACAAGATCA+AGG | + | tig0028533:53447-53466 | Msa1438300:CDS | 35.0% | |
| CTATAAAGAAGTTGAAGGAG+AGG | + | tig0028533:54003-54022 | Msa1438300:CDS | 35.0% | |
| TATCTTCTTCAACCGCTACT+CGG | - | tig0028533:53084-53103 | None:intergenic | 40.0% | |
| GAAGATTGAAGAGAAGGGAA+AGG | - | tig0028533:53283-53302 | None:intergenic | 40.0% | |
| ATTTCTCACAGCGAAGACAA+CGG | + | tig0028533:53355-53374 | Msa1438300:intron | 40.0% | |
| !! | GTAAAGCTTGATAGCGTGAA+TGG | - | tig0028533:53437-53456 | None:intergenic | 40.0% |
| !! | AAGAGCACCAAGGAAAAACT+CGG | - | tig0028533:53551-53570 | None:intergenic | 40.0% |
| !! | AGAAATTGAGAAGAGCACCA+AGG | - | tig0028533:53561-53580 | None:intergenic | 40.0% |
| TTCTCAATTTCTGTCTCGAC+AGG | + | tig0028533:53569-53588 | Msa1438300:CDS | 40.0% | |
| TTGCTGAATGCAATGAAGCA+AGG | + | tig0028533:53881-53900 | Msa1438300:intron | 40.0% | |
| AAGAGAAATGCCTTCTGTTC+AGG | + | tig0028533:53905-53924 | Msa1438300:intron | 40.0% | |
| TATCTTCTTCAACCGCTACT+CGG | - | tig0028533:53084-53103 | None:intergenic | 40.0% | |
| GAAGATTGAAGAGAAGGGAA+AGG | - | tig0028533:53283-53302 | None:intergenic | 40.0% | |
| ATTTCTCACAGCGAAGACAA+CGG | + | tig0028533:53355-53374 | Msa1438300:intron | 40.0% | |
| !! | GTAAAGCTTGATAGCGTGAA+TGG | - | tig0028533:53437-53456 | None:intergenic | 40.0% |
| !! | AAGAGCACCAAGGAAAAACT+CGG | - | tig0028533:53551-53570 | None:intergenic | 40.0% |
| !! | AGAAATTGAGAAGAGCACCA+AGG | - | tig0028533:53561-53580 | None:intergenic | 40.0% |
| TTCTCAATTTCTGTCTCGAC+AGG | + | tig0028533:53569-53588 | Msa1438300:CDS | 40.0% | |
| TTGCTGAATGCAATGAAGCA+AGG | + | tig0028533:53881-53900 | Msa1438300:intron | 40.0% | |
| AAGAGAAATGCCTTCTGTTC+AGG | + | tig0028533:53905-53924 | Msa1438300:intron | 40.0% | |
| CAATTTCTGAGTCCGAGTAG+CGG | + | tig0028533:53069-53088 | Msa1438300:five_prime_UTR | 45.0% | |
| GGAGAAAATCGAGGTAGTTG+AGG | - | tig0028533:53247-53266 | None:intergenic | 45.0% | |
| GTTACTCGTGGAGAAAATCG+AGG | - | tig0028533:53256-53275 | None:intergenic | 45.0% | |
| GAGAATCCTGATCTTCACGT+TGG | + | tig0028533:53409-53428 | Msa1438300:CDS | 45.0% | |
| ATGGATCCAACGTGAAGATC+AGG | - | tig0028533:53418-53437 | None:intergenic | 45.0% | |
| ! | AGGAAAAACTCGGTTCGATG+AGG | - | tig0028533:53541-53560 | None:intergenic | 45.0% |
| ! | CATCGAACCGAGTTTTTCCT+TGG | + | tig0028533:53541-53560 | Msa1438300:CDS | 45.0% |
| AGAAATGCCTTCTGTTCAGG+AGG | + | tig0028533:53908-53927 | Msa1438300:intron | 45.0% | |
| CAATTTCTGAGTCCGAGTAG+CGG | + | tig0028533:53069-53088 | Msa1438300:five_prime_UTR | 45.0% | |
| GGAGAAAATCGAGGTAGTTG+AGG | - | tig0028533:53247-53266 | None:intergenic | 45.0% | |
| GTTACTCGTGGAGAAAATCG+AGG | - | tig0028533:53256-53275 | None:intergenic | 45.0% | |
| GAGAATCCTGATCTTCACGT+TGG | + | tig0028533:53409-53428 | Msa1438300:CDS | 45.0% | |
| ATGGATCCAACGTGAAGATC+AGG | - | tig0028533:53418-53437 | None:intergenic | 45.0% | |
| ! | AGGAAAAACTCGGTTCGATG+AGG | - | tig0028533:53541-53560 | None:intergenic | 45.0% |
| ! | CATCGAACCGAGTTTTTCCT+TGG | + | tig0028533:53541-53560 | Msa1438300:CDS | 45.0% |
| AGAAATGCCTTCTGTTCAGG+AGG | + | tig0028533:53908-53927 | Msa1438300:intron | 45.0% | |
| TGTCGAACTACGAATACCCC+AGG | + | tig0028533:53108-53127 | Msa1438300:CDS | 50.0% | |
| GGAGAGGTCGTTCTCTGTAA+CGG | - | tig0028533:53183-53202 | None:intergenic | 50.0% | |
| GTAGAGATCCAAAACGACGC+CGG | - | tig0028533:53216-53235 | None:intergenic | 50.0% | |
| GGGAAAGGGATAGTTACTCG+TGG | - | tig0028533:53268-53287 | None:intergenic | 50.0% | |
| ! | AACTCGGTTCGATGAGGATC+AGG | - | tig0028533:53535-53554 | None:intergenic | 50.0% |
| TGTAGGCGAATTCAACGCGT+TGG | + | tig0028533:53718-53737 | Msa1438300:CDS | 50.0% | |
| AATGCCTTCTGTTCAGGAGG+TGG | + | tig0028533:53911-53930 | Msa1438300:intron | 50.0% | |
| GAAGTTGAAGGAGAGGACTG+TGG | + | tig0028533:54010-54029 | Msa1438300:CDS | 50.0% | |
| GAAGGAGAGGACTGTGGAAA+TGG | + | tig0028533:54016-54035 | Msa1438300:CDS | 50.0% | |
| TGTCGAACTACGAATACCCC+AGG | + | tig0028533:53108-53127 | Msa1438300:CDS | 50.0% | |
| GGAGAGGTCGTTCTCTGTAA+CGG | - | tig0028533:53183-53202 | None:intergenic | 50.0% | |
| GTAGAGATCCAAAACGACGC+CGG | - | tig0028533:53216-53235 | None:intergenic | 50.0% | |
| GGGAAAGGGATAGTTACTCG+TGG | - | tig0028533:53268-53287 | None:intergenic | 50.0% | |
| ! | AACTCGGTTCGATGAGGATC+AGG | - | tig0028533:53535-53554 | None:intergenic | 50.0% |
| TGTAGGCGAATTCAACGCGT+TGG | + | tig0028533:53718-53737 | Msa1438300:CDS | 50.0% | |
| AATGCCTTCTGTTCAGGAGG+TGG | + | tig0028533:53911-53930 | Msa1438300:intron | 50.0% | |
| GAAGTTGAAGGAGAGGACTG+TGG | + | tig0028533:54010-54029 | Msa1438300:CDS | 50.0% | |
| GAAGGAGAGGACTGTGGAAA+TGG | + | tig0028533:54016-54035 | Msa1438300:CDS | 50.0% | |
| ! | ATTTCTGGGCGACGAAGCCT+GGG | - | tig0028533:53128-53147 | None:intergenic | 55.0% |
| !! | TATTTCTGGGCGACGAAGCC+TGG | - | tig0028533:53129-53148 | None:intergenic | 55.0% |
| GAGGTCGTTCTCTGTAACGG+TGG | - | tig0028533:53180-53199 | None:intergenic | 55.0% | |
| !! | TCCAAAACGACGCCGGTTCT+GGG | - | tig0028533:53209-53228 | None:intergenic | 55.0% |
| !! | ATCCAAAACGACGCCGGTTC+TGG | - | tig0028533:53210-53229 | None:intergenic | 55.0% |
| GCTTCCACCTCCTGAACAGA+AGG | - | tig0028533:53918-53937 | None:intergenic | 55.0% | |
| ! | ATTTCTGGGCGACGAAGCCT+GGG | - | tig0028533:53128-53147 | None:intergenic | 55.0% |
| !! | TATTTCTGGGCGACGAAGCC+TGG | - | tig0028533:53129-53148 | None:intergenic | 55.0% |
| GAGGTCGTTCTCTGTAACGG+TGG | - | tig0028533:53180-53199 | None:intergenic | 55.0% | |
| !! | TCCAAAACGACGCCGGTTCT+GGG | - | tig0028533:53209-53228 | None:intergenic | 55.0% |
| !! | ATCCAAAACGACGCCGGTTC+TGG | - | tig0028533:53210-53229 | None:intergenic | 55.0% |
| GCTTCCACCTCCTGAACAGA+AGG | - | tig0028533:53918-53937 | None:intergenic | 55.0% | |
| TTTCTGGGCGACGAAGCCTG+GGG | - | tig0028533:53127-53146 | None:intergenic | 60.0% | |
| GACCTCTCCAACCCCAGAAC+CGG | + | tig0028533:53194-53213 | Msa1438300:CDS | 60.0% | |
| !! | CCAAAACGACGCCGGTTCTG+GGG | - | tig0028533:53208-53227 | None:intergenic | 60.0% |
| TTTCTGGGCGACGAAGCCTG+GGG | - | tig0028533:53127-53146 | None:intergenic | 60.0% | |
| GACCTCTCCAACCCCAGAAC+CGG | + | tig0028533:53194-53213 | Msa1438300:CDS | 60.0% | |
| !! | CCAAAACGACGCCGGTTCTG+GGG | - | tig0028533:53208-53227 | None:intergenic | 60.0% |
| !! | AACGACGCCGGTTCTGGGGT+TGG | - | tig0028533:53204-53223 | None:intergenic | 65.0% |
| ! | CCCCAGAACCGGCGTCGTTT+TGG | + | tig0028533:53205-53224 | Msa1438300:CDS | 65.0% |
| !! | AACGACGCCGGTTCTGGGGT+TGG | - | tig0028533:53204-53223 | None:intergenic | 65.0% |
| ! | CCCCAGAACCGGCGTCGTTT+TGG | + | tig0028533:53205-53224 | Msa1438300:CDS | 65.0% |
| !! | CGCCGGTTCTGGGGTTGGAG+AGG | - | tig0028533:53199-53218 | None:intergenic | 70.0% |
| !! | CGCCGGTTCTGGGGTTGGAG+AGG | - | tig0028533:53199-53218 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0028533 | gene | 52944 | 54046 | 52944 | ID=Msa1438300;Name=Msa1438300 |
| tig0028533 | mRNA | 52944 | 54046 | 52944 | ID=Msa1438300-mRNA-1;Parent=Msa1438300;Name=Msa1438300-mRNA-1;_AED=0.06;_eAED=0.06;_QI=163|0.66|0.5|1|1|1|4|0|201 |
| tig0028533 | exon | 52944 | 53270 | 52944 | ID=Msa1438300-mRNA-1:exon:11145;Parent=Msa1438300-mRNA-1 |
| tig0028533 | exon | 53366 | 53590 | 53366 | ID=Msa1438300-mRNA-1:exon:11146;Parent=Msa1438300-mRNA-1 |
| tig0028533 | exon | 53688 | 53781 | 53688 | ID=Msa1438300-mRNA-1:exon:11147;Parent=Msa1438300-mRNA-1 |
| tig0028533 | exon | 53927 | 54046 | 53927 | ID=Msa1438300-mRNA-1:exon:11148;Parent=Msa1438300-mRNA-1 |
| tig0028533 | five_prime_UTR | 52944 | 53106 | 52944 | ID=Msa1438300-mRNA-1:five_prime_utr;Parent=Msa1438300-mRNA-1 |
| tig0028533 | CDS | 53107 | 53270 | 53107 | ID=Msa1438300-mRNA-1:cds;Parent=Msa1438300-mRNA-1 |
| tig0028533 | CDS | 53366 | 53590 | 53366 | ID=Msa1438300-mRNA-1:cds;Parent=Msa1438300-mRNA-1 |
| tig0028533 | CDS | 53688 | 53781 | 53688 | ID=Msa1438300-mRNA-1:cds;Parent=Msa1438300-mRNA-1 |
| tig0028533 | CDS | 53927 | 54046 | 53927 | ID=Msa1438300-mRNA-1:cds;Parent=Msa1438300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
