AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0713920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0713920 MtrunA17_Chr5g0401231 96.905 1260 39 0 1 1260 1 1260 0.0 2505
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0713920 AT1G64960.2 50.594 1263 585 9 1 1258 1 1229 0.0 1138
Msa0713920 AT1G64960.1 49.723 1263 567 9 1 1258 1 1200 0.0 1103

Find 242 sgRNAs with CRISPR-Local

Find 405 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCGTTGTCACATTAAATT+TGG 0.118138 5_1:-6401888 Msa0713920:CDS
GTAAGCATCTTTGTTATAAT+TGG 0.182037 5_1:+6402865 None:intergenic
GCTACAATCAAGGGCCATTT+TGG 0.186330 5_1:+6399484 None:intergenic
GTCGTGTCCTTCATCTATTT+TGG 0.194615 5_1:-6402903 Msa0713920:CDS
ACATAAGTTGTTGCTTTCTT+TGG 0.204410 5_1:-6401964 Msa0713920:CDS
AATTAAATCAAGCAAGTTAT+TGG 0.209359 5_1:+6399675 None:intergenic
GAATGCTTTGCATCTGCTTT+TGG 0.221348 5_1:-6403061 Msa0713920:CDS
AGGGTTTGATTGAATGAATT+AGG 0.240634 5_1:+6404525 None:intergenic
AGAAGTCCTGCCACATTATC+TGG 0.262209 5_1:+6402065 None:intergenic
TGAAGTTACAATTTCCAAAA+TGG 0.266674 5_1:-6399498 Msa0713920:CDS
AAGTCGATGTTGGAGGCTTA+TGG 0.282924 5_1:-6403816 Msa0713920:CDS
TTCTTGGTTTGTTCACTTGT+TGG 0.284764 5_1:-6399313 Msa0713920:CDS
TTTGTATATTAGAAGGGTTT+TGG 0.286758 5_1:-6403676 Msa0713920:CDS
AGGGGTTGCTTGAACCTCTT+TGG 0.288614 5_1:-6399102 Msa0713920:CDS
TTGGCTGCCTGATGTAGTTT+TGG 0.290932 5_1:-6399590 Msa0713920:CDS
TTGAATGTCGAGAATTTATC+TGG 0.295429 5_1:+6399406 None:intergenic
GCATGATAATTTGATTGTTT+TGG 0.298824 5_1:-6404201 Msa0713920:CDS
AGATCTAAAGATTGCTTTCC+TGG 0.301662 5_1:+6401692 None:intergenic
AGAAGATGGAAGAAAGTTTC+TGG 0.302676 5_1:-6403916 Msa0713920:CDS
CATAAGTTGTTGCTTTCTTT+GGG 0.303041 5_1:-6401963 Msa0713920:CDS
ATTCCACTCCTTGAATCTTC+TGG 0.303771 5_1:+6403762 None:intergenic
TGTTTCAACTGAATCATGTT+TGG 0.303846 5_1:-6399653 Msa0713920:CDS
CATAGACATATCTCCTGTTT+TGG 0.310009 5_1:-6401592 Msa0713920:CDS
GATTGGCGATCAACATCTTC+AGG 0.310014 5_1:+6402002 None:intergenic
GGTTCTATCCATGCAAGTTC+TGG 0.311947 5_1:-6403708 Msa0713920:CDS
ATCGTTGTCACATTAAATTT+GGG 0.311953 5_1:-6401887 Msa0713920:CDS
AAAATCAAAATTCCACAAAA+AGG 0.312821 5_1:-6400605 Msa0713920:CDS
TCTTGGTTTGTTCACTTGTT+GGG 0.323357 5_1:-6399312 Msa0713920:CDS
CACTGCAGAGAGCACAGTTT+TGG 0.325243 5_1:+6399462 None:intergenic
CGACGGAGGGTGGCGGTGGG+AGG 0.328088 5_1:+6404392 None:intergenic
TTGATCGCCAATCTAAAATT+AGG 0.330348 5_1:-6401992 Msa0713920:CDS
GGTCAAAGCATTCCTGAGTT+TGG 0.330640 5_1:-6402294 Msa0713920:CDS
AGAGCGACGGAGGGTGGCGG+TGG 0.331358 5_1:+6404388 None:intergenic
ACAGCAATTGTTCTAACTTC+TGG 0.331484 5_1:+6402937 None:intergenic
ATCGGATTGGGAACTGGGTT+CGG 0.345664 5_1:+6404340 None:intergenic
TCAGCTTGGGAAGGAGCTTT+TGG 0.349604 5_1:-6403871 Msa0713920:CDS
GTTTCAACTGAATCATGTTT+GGG 0.353872 5_1:-6399652 Msa0713920:CDS
ATTTGAAACTGTTGTTAAAC+AGG 0.356426 5_1:-6403968 Msa0713920:CDS
AAAGTGGAAGGTTTACTAAC+TGG 0.356693 5_1:-6402143 Msa0713920:CDS
GAGAAATTGATGCATGTAAA+GGG 0.356739 5_1:-6399121 Msa0713920:CDS
GGGTTTGATTGAATGAATTA+GGG 0.357688 5_1:+6404526 None:intergenic
GGGTGGCGGTGGGAGGGGTT+TGG 0.362193 5_1:+6404399 None:intergenic
AATTGAGAATGGGTTCTTGC+AGG 0.370908 5_1:-6403742 Msa0713920:CDS
CATAACTTGGAGTCAACAAC+TGG 0.378416 5_1:-6400666 Msa0713920:CDS
ACAGTGTTACAGCTACTAAA+AGG 0.379156 5_1:-6401848 Msa0713920:CDS
AGTCAGTGAACCATGCTATA+TGG 0.381458 5_1:-6402195 Msa0713920:CDS
TAAGGTGCTCTGTCCAAGAC+TGG 0.381805 5_1:-6402737 Msa0713920:CDS
GCTGCATTACACTAGTAAAA+AGG 0.383645 5_1:-6402391 Msa0713920:CDS
CAATGTGGATTCACATAACT+TGG 0.384118 5_1:-6400679 Msa0713920:CDS
CTTATGCAGCAGGGTTGTTA+AGG 0.385515 5_1:+6401917 None:intergenic
ACGGAGGGTGGCGGTGGGAG+GGG 0.386179 5_1:+6404394 None:intergenic
TTCTTGCAGGATTTGATTGA+GGG 0.387600 5_1:-6403729 Msa0713920:CDS
AGGGAGTGAAGAAATGAGAT+TGG 0.390904 5_1:+6404499 None:intergenic
AAGGACTTTGAGCTGGCATT+AGG 0.391101 5_1:-6399280 Msa0713920:CDS
TAAATGTTCACTTCCACTTT+CGG 0.391923 5_1:+6399537 None:intergenic
CTCGACATTCAATAAACTTA+CGG 0.392019 5_1:-6399395 Msa0713920:CDS
ACGTATCATCTATATGAAAC+TGG 0.400632 5_1:-6399079 Msa0713920:CDS
TGACATGATGTTATCTTCTC+TGG 0.402253 5_1:-6399203 Msa0713920:CDS
TTGAGGCATCGGGATCTTCA+AGG 0.407230 5_1:+6403028 None:intergenic
TACTGCTGTTCTGAAGTTCA+TGG 0.407356 5_1:-6399950 Msa0713920:CDS
CTGCAGTAAGTAACTCTTTG+AGG 0.407497 5_1:+6402168 None:intergenic
AGAGTATAATGGATGCAGTT+GGG 0.410082 5_1:-6399342 Msa0713920:CDS
ACTGGGTTCGGTGGTGGCAG+TGG 0.411975 5_1:+6404352 None:intergenic
TTTGTTAGCTTCTGAGCTAC+AGG 0.413385 5_1:+6402470 None:intergenic
CAAAATATTGCACCGGCCAT+TGG 0.415212 5_1:+6402365 None:intergenic
CCACTCTCATGAAGTCCTTA+AGG 0.418852 5_1:-6402755 Msa0713920:CDS
TTGCCGAGCCAGTCATATTT+CGG 0.420764 5_1:-6403599 Msa0713920:CDS
AGCGTCTAAAACTCATCTTA+TGG 0.421060 5_1:-6402321 Msa0713920:CDS
CTTAACAACCCTGCTGCATA+AGG 0.424511 5_1:-6401916 Msa0713920:CDS
TAATCGTGATGACAGGGATT+GGG 0.424973 5_1:-6399227 Msa0713920:CDS
TCAAGGAGTGGAATTGAGAA+TGG 0.425285 5_1:-6403753 Msa0713920:CDS
AGCTAGTAATAACGATGAAC+TGG 0.425908 5_1:-6399143 Msa0713920:CDS
TAAAACTCATCTTATGGAAC+TGG 0.430233 5_1:-6402315 Msa0713920:CDS
AGTCGATGTTGGAGGCTTAT+GGG 0.430569 5_1:-6403815 Msa0713920:CDS
ATGCGTTTCGCATCCGAGAA+AGG 0.435129 5_1:-6404264 Msa0713920:CDS
AGGCTATCTCTGACAAATGC+TGG 0.441732 5_1:-6400579 Msa0713920:CDS
TTGGGAACTGGGTTCGGTGG+TGG 0.442290 5_1:+6404346 None:intergenic
GAAATCAACGATTCGCGCTC+CGG 0.444636 5_1:+6404113 None:intergenic
TCATGCAATGCTTGAACTCC+AGG 0.448812 5_1:+6404218 None:intergenic
CGATGCCTCAAAAGAGGATA+AGG 0.452469 5_1:-6403016 Msa0713920:CDS
CAATAAACTTACGGCTATGC+TGG 0.453081 5_1:-6399386 Msa0713920:CDS
CAGAATTGAATTTGAGGAAG+AGG 0.455907 5_1:-6399818 Msa0713920:CDS
AGGGCCATATATGCCAAAAC+AGG 0.456311 5_1:+6401579 None:intergenic
CTCCTCAATGGGCACTATTG+AGG 0.456844 5_1:+6402424 None:intergenic
GTTACTTACTGCAGAGAAAG+TGG 0.458246 5_1:-6402159 Msa0713920:CDS
CCCAGTGCCAAAACTACATC+AGG 0.461018 5_1:+6399583 None:intergenic
CGATTACATGCCTCCTCAAT+GGG 0.461846 5_1:+6402413 None:intergenic
GCGATTACATGCCTCCTCAA+TGG 0.462529 5_1:+6402412 None:intergenic
TCCTCAATGGGCACTATTGA+GGG 0.465738 5_1:+6402425 None:intergenic
TTATATTTGAAAACAGAAGA+TGG 0.467998 5_1:-6403930 Msa0713920:CDS
CGAGCACGTGCTCAACTGCT+TGG 0.468749 5_1:-6400739 Msa0713920:CDS
ATCAGGCAGCCAAGGCTTTG+CGG 0.469242 5_1:+6399600 None:intergenic
ACTTGTTGGGCTAGAACAAA+AGG 0.469593 5_1:-6399299 Msa0713920:CDS
AAGTCAGCATTGAGCATTGT+GGG 0.469732 5_1:-6401626 Msa0713920:CDS
GGAAGAGCGACGGAGGGTGG+CGG 0.470233 5_1:+6404385 None:intergenic
TGAAGAAATGAGATTGGAAG+AGG 0.470796 5_1:+6404505 None:intergenic
AGTTGTTTAATCGTGATGAC+AGG 0.474192 5_1:-6399234 Msa0713920:CDS
TTGTTGCAGCCGCAAAGCCT+TGG 0.475384 5_1:-6399609 Msa0713920:CDS
GTTAGAACAATTGCTGTTGA+GGG 0.477109 5_1:-6402931 Msa0713920:CDS
ATGGATTCGTAGAGAGAGGG+AGG 0.479474 5_1:+6404479 None:intergenic
GTTCTACAACACACCGAAAG+TGG 0.479507 5_1:-6399550 Msa0713920:CDS
GTTCTTGCAGGATTTGATTG+AGG 0.481339 5_1:-6403730 Msa0713920:CDS
TTGGGTTGAGTGATCAGCTT+GGG 0.484657 5_1:-6403884 Msa0713920:CDS
ATTAATCAGAGGACCGTTGA+TGG 0.485600 5_1:-6403645 Msa0713920:CDS
GATAGGCAGCCTTATGCAGC+AGG 0.485936 5_1:+6401907 None:intergenic
GGAGAAATTGATGCATGTAA+AGG 0.487328 5_1:-6399122 Msa0713920:CDS
GACGGAGGGTGGCGGTGGGA+GGG 0.487855 5_1:+6404393 None:intergenic
AGCATTAAGTGACCCAGTCT+TGG 0.488311 5_1:+6402724 None:intergenic
GTCTTGGACAGAGCACCTTA+AGG 0.488423 5_1:+6402740 None:intergenic
ATGATGTATGCAACGAGGTA+AGG 0.489515 5_1:-6402819 Msa0713920:CDS
AACGATCTCGATAGAACAAA+AGG 0.490167 5_1:+6404080 None:intergenic
GTAAGGCTTTCTACGTTGAA+TGG 0.490296 5_1:-6402802 Msa0713920:CDS
ATCTTTGTTATAATTGGTGA+CGG 0.493361 5_1:+6402871 None:intergenic
GGATTGAATTGTGGTGGTGA+TGG 0.498059 5_1:+6404460 None:intergenic
TGAGGCATCGGGATCTTCAA+GGG 0.498223 5_1:+6403029 None:intergenic
TCATCACAGAATTGAATTTG+AGG 0.499129 5_1:-6399824 Msa0713920:CDS
TGCAGTAAGTAACTCTTTGA+GGG 0.500623 5_1:+6402169 None:intergenic
GCTGAATGCAGATCAGATAG+AGG 0.504242 5_1:-6402255 Msa0713920:CDS
AGTTAGAACAATTGCTGTTG+AGG 0.504585 5_1:-6402932 Msa0713920:CDS
AAGAGTATAATGGATGCAGT+TGG 0.504894 5_1:-6399343 Msa0713920:CDS
GGTGATGGATTCGTAGAGAG+AGG 0.505660 5_1:+6404475 None:intergenic
GCGGGAAGAGCGACGGAGGG+TGG 0.510893 5_1:+6404382 None:intergenic
AGTCATATTTCGGTCTCTGC+AGG 0.512308 5_1:-6403589 Msa0713920:intron
GGGATATATTGTTTCGAGCA+TGG 0.517339 5_1:-6403794 Msa0713920:CDS
TTAATCGTGATGACAGGGAT+TGG 0.517973 5_1:-6399228 Msa0713920:CDS
CAAGGAGTGGAATTGAGAAT+GGG 0.519108 5_1:-6403752 Msa0713920:CDS
TGCTTCAGCATGAGGATACC+AGG 0.519304 5_1:-6401710 Msa0713920:CDS
CGATTCGAGAAGATTGAGGA+AGG 0.522090 5_1:+6404439 None:intergenic
AACATCGACTTCCGTCCATA+CGG 0.522970 5_1:+6403828 None:intergenic
TTAATCAGAGGACCGTTGAT+GGG 0.523772 5_1:-6403644 Msa0713920:CDS
CAATTCTGTGATGATACAGC+TGG 0.524071 5_1:+6399833 None:intergenic
AAGTGGAAGGTTTACTAACT+GGG 0.525292 5_1:-6402142 Msa0713920:CDS
AAGACTGGGTCACTTAATGC+TGG 0.526089 5_1:-6402722 Msa0713920:CDS
AATGTGATACTGACTGATTC+CGG 0.528013 5_1:-6399736 Msa0713920:CDS
TTCTTCTACATTACTTTCAG+AGG 0.530469 5_1:-6401475 Msa0713920:intron
CAACCGTCATTTGCAGAGCA+AGG 0.531075 5_1:+6401559 None:intergenic
GTCATCACGATTAAACAACT+TGG 0.532544 5_1:+6399237 None:intergenic
AAGCTGTGCCAGAAGATTCA+AGG 0.532592 5_1:-6403770 Msa0713920:CDS
GAAAAGAATGGTGATTCCAA+GGG 0.533003 5_1:-6401516 Msa0713920:CDS
ACCTCAACAAGTGCTTTGTA+AGG 0.535761 5_1:-6399983 Msa0713920:CDS
TGTTCGATTCGAGAAGATTG+AGG 0.537356 5_1:+6404435 None:intergenic
GAGTATAATGGATGCAGTTG+GGG 0.538063 5_1:-6399341 Msa0713920:CDS
AAGTTGTTGCTTTCTTTGGG+AGG 0.538403 5_1:-6401960 Msa0713920:CDS
CAAGTTATTGGCAAGAGTGA+AGG 0.539764 5_1:+6399687 None:intergenic
TGCAAGTATGCCATCTCGGA+AGG 0.539958 5_1:-6402344 Msa0713920:CDS
GTATGGACGGAAGTCGATGT+TGG 0.540415 5_1:-6403826 Msa0713920:CDS
CAAAAGTTCCAGAACTTGCA+TGG 0.542061 5_1:+6403700 None:intergenic
ATGGTGGAAGGAGAATTTAC+CGG 0.542800 5_1:-6404132 Msa0713920:CDS
GATGATTATTTAGTAGCTGT+AGG 0.545384 5_1:-6401756 Msa0713920:CDS
GAAGAAATGAGATTGGAAGA+GGG 0.546308 5_1:+6404506 None:intergenic
CTTAAGGACTTCATGAGAGT+GGG 0.547100 5_1:+6402756 None:intergenic
AATCGTGATGACAGGGATTG+GGG 0.550245 5_1:-6399226 Msa0713920:CDS
AAATTTAATGTGACAACGAT+AGG 0.550315 5_1:+6401890 None:intergenic
TAGAGACTTGCTTCAGCATG+AGG 0.551742 5_1:-6401718 Msa0713920:CDS
ATTCGTTCGCAGATTCCGTA+TGG 0.553384 5_1:-6403843 Msa0713920:CDS
TTGAGACTATATGTGAAGAA+TGG 0.555953 5_1:-6404151 Msa0713920:CDS
CCTCACAGTACAAGTTGCTA+TGG 0.556604 5_1:-6402692 Msa0713920:CDS
TGAAAAGAATGGTGATTCCA+AGG 0.558871 5_1:-6401517 Msa0713920:CDS
TTTAGACGCTCCTTCCGAGA+TGG 0.560520 5_1:+6402334 None:intergenic
CACTGTTTGTCCAGATAATG+TGG 0.561270 5_1:-6402075 Msa0713920:CDS
AGATCCCGATGCCTCAAAAG+AGG 0.561369 5_1:-6403022 Msa0713920:CDS
ATTGAGGAAGGATTGAATTG+TGG 0.561575 5_1:+6404451 None:intergenic
GTGATGGATTCGTAGAGAGA+GGG 0.563564 5_1:+6404476 None:intergenic
GAGCGACGGAGGGTGGCGGT+GGG 0.564784 5_1:+6404389 None:intergenic
TAATTTCCCAAAATAGATGA+AGG 0.566722 5_1:+6402896 None:intergenic
AGACCGAAATATGACTGGCT+CGG 0.567968 5_1:+6403596 None:intergenic
TCCCTCAATAGTGCCCATTG+AGG 0.568869 5_1:-6402426 Msa0713920:CDS
TGGGAGGGTTTATTAATCAG+AGG 0.569490 5_1:-6403656 Msa0713920:CDS
GTCGATGTTGGAGGCTTATG+GGG 0.569573 5_1:-6403814 Msa0713920:CDS
GGCTATCTCTGACAAATGCT+GGG 0.569692 5_1:-6400578 Msa0713920:CDS
GTGCTCTCTGCAGTGAATGA+AGG 0.573610 5_1:-6399454 Msa0713920:CDS
TTCTCGGATGCGAAACGCAT+AGG 0.573738 5_1:+6404267 None:intergenic
GTTAGCTTCTGAGCTACAGG+AGG 0.579964 5_1:+6402473 None:intergenic
GTTTGTCCAGATAATGTGGC+AGG 0.581670 5_1:-6402071 Msa0713920:CDS
TGCAGAGACCGAAATATGAC+TGG 0.581828 5_1:+6403591 None:intergenic
AAAACTACATCAGGCAGCCA+AGG 0.582232 5_1:+6399592 None:intergenic
AATGCTGGGTACCCAAGTAA+TGG 0.583247 5_1:-6400564 Msa0713920:CDS
AGAACAAAAGGACTTTGAGC+TGG 0.584523 5_1:-6399287 Msa0713920:CDS
TTTAGTAGCTGTAACACTGT+GGG 0.585322 5_1:+6401851 None:intergenic
CTTACTGCAGAGAAAGTGGA+AGG 0.585811 5_1:-6402155 Msa0713920:CDS
CTCAATAGTGCCCATTGAGG+AGG 0.589147 5_1:-6402423 Msa0713920:CDS
CCTTAAGGACTTCATGAGAG+TGG 0.589374 5_1:+6402755 None:intergenic
TGGACGGAAGTCGATGTTGG+AGG 0.591488 5_1:-6403823 Msa0713920:CDS
GGCCCTTGCTCTGCAAATGA+CGG 0.591616 5_1:-6401562 Msa0713920:CDS
GTTGTTTAATCGTGATGACA+GGG 0.593151 5_1:-6399233 Msa0713920:CDS
AGCTACAGGAGGTTGATCAC+TGG 0.593278 5_1:+6402484 None:intergenic
TTGAGGGCATCCATATAGCA+TGG 0.595418 5_1:+6402185 None:intergenic
AGACTATATGTGAAGAATGG+TGG 0.596012 5_1:-6404148 Msa0713920:CDS
AAGAATAATCCATTGTTGTG+AGG 0.596859 5_1:+6399901 None:intergenic
TAGTAGCTGTAGGAGTTGCA+TGG 0.597500 5_1:-6401746 Msa0713920:CDS
CTGAATGCAGATCAGATAGA+GGG 0.598250 5_1:-6402254 Msa0713920:CDS
GAGGCATCGGGATCTTCAAG+GGG 0.599155 5_1:+6403030 None:intergenic
TGTCATTATGGAGGATCCAC+CGG 0.599171 5_1:+6399717 None:intergenic
AACCGTCATTTGCAGAGCAA+GGG 0.599307 5_1:+6401560 None:intergenic
ACCTTACAAAGCACTTGTTG+AGG 0.600071 5_1:+6399982 None:intergenic
TTTGGGTTGAGTGATCAGCT+TGG 0.601001 5_1:-6403885 Msa0713920:CDS
GTTCGCAGATTCCGTATGGA+CGG 0.602215 5_1:-6403839 Msa0713920:CDS
AAGGTGCTCTGTCCAAGACT+GGG 0.602746 5_1:-6402736 Msa0713920:CDS
TATATGTGAAGAATGGTGGA+AGG 0.602831 5_1:-6404144 Msa0713920:CDS
TAATCAGAGGACCGTTGATG+GGG 0.604531 5_1:-6403643 Msa0713920:CDS
TTTGCGGGAAGAGCGACGGA+GGG 0.604704 5_1:+6404379 None:intergenic
AAATCTATCATAAGATAGAG+AGG 0.605785 5_1:-6399177 Msa0713920:CDS
TGGATTCGTAGAGAGAGGGA+GGG 0.607728 5_1:+6404480 None:intergenic
TCATCTATATGAAACTGGAA+AGG 0.612001 5_1:-6399074 Msa0713920:CDS
GTGCCAGAAGATTCAAGGAG+TGG 0.612532 5_1:-6403765 Msa0713920:CDS
GTGAATGAAGGTGAAGGAGA+GGG 0.614181 5_1:-6399442 Msa0713920:CDS
TCGTTGTCACATTAAATTTG+GGG 0.617087 5_1:-6401886 Msa0713920:CDS
ATACTTGCAAAATATTGCAC+CGG 0.617576 5_1:+6402358 None:intergenic
GTTGAGTGATCAGCTTGGGA+AGG 0.621002 5_1:-6403880 Msa0713920:CDS
TATAGATGATACGTCCAAAG+AGG 0.623631 5_1:+6399088 None:intergenic
AGGAGCAAAACACATGGCAG+TGG 0.623835 5_1:+6399921 None:intergenic
CACATTATCTGGACAAACAG+TGG 0.625302 5_1:+6402076 None:intergenic
TCTGCAGTGAATGAAGGTGA+AGG 0.629597 5_1:-6399448 Msa0713920:CDS
TAGTTTCTCAACCCCATCAA+CGG 0.629952 5_1:+6403632 None:intergenic
CTTGTGACAAAACCAAACTC+AGG 0.631868 5_1:+6402282 None:intergenic
TTCGAAGTCAAACAACGCGA+AGG 0.636487 5_1:+6404007 None:intergenic
CAAATGACGGTTGATAATGT+TGG 0.639424 5_1:-6401549 Msa0713920:CDS
GAGGAAGGATTGAATTGTGG+TGG 0.641780 5_1:+6404454 None:intergenic
GGATTGGGAACTGGGTTCGG+TGG 0.647078 5_1:+6404343 None:intergenic
TTAAGGACTTCATGAGAGTG+GGG 0.647165 5_1:+6402757 None:intergenic
TAGGGTTTATATGTTTCGCG+AGG 0.654308 5_1:-6404030 Msa0713920:CDS
GCTGGGTACCCAAGTAATGG+AGG 0.655722 5_1:-6400561 Msa0713920:intron
CTTCGAAGATGAGAGTATCG+AGG 0.656364 5_1:-6403991 Msa0713920:CDS
AGTGTTGTCACAAACTGCCA+TGG 0.660349 5_1:-6402029 Msa0713920:CDS
GAAGTCAGCATTGAGCATTG+TGG 0.665576 5_1:-6401627 Msa0713920:CDS
CAACATCTTCAGGTAAACCA+TGG 0.669355 5_1:+6402012 None:intergenic
GGCACAAGTAGTGAAAAGAA+TGG 0.672314 5_1:-6401528 Msa0713920:CDS
GTAGCTGTAACACTGTGGGA+TGG 0.675445 5_1:+6401855 None:intergenic
CACTGTACAATATCACAATG+TGG 0.676395 5_1:-6400694 Msa0713920:CDS
ATAACTTGGAGTCAACAACT+GGG 0.682337 5_1:-6400665 Msa0713920:CDS
AGGCATCGGGATCTTCAAGG+GGG 0.688549 5_1:+6403031 None:intergenic
AGTGGAAGGTTTACTAACTG+GGG 0.692191 5_1:-6402141 Msa0713920:CDS
GCTAAAGAGATGAATTCTTG+TGG 0.699935 5_1:+6404590 None:intergenic
ACTATTGAGGGAAAGTACGA+AGG 0.710367 5_1:+6402437 None:intergenic
GTTGTGAGGAGCAAAACACA+TGG 0.711346 5_1:+6399915 None:intergenic
ATAGGCAGCCTTATGCAGCA+GGG 0.712099 5_1:+6401908 None:intergenic
AAAAGAATGGTGATTCCAAG+GGG 0.712247 5_1:-6401515 Msa0713920:CDS
GTGATACTGACTGATTCCGG+TGG 0.713602 5_1:-6399733 Msa0713920:CDS
CCATAGCAACTTGTACTGTG+AGG 0.720086 5_1:+6402692 None:intergenic
AGTGAATGAAGGTGAAGGAG+AGG 0.723579 5_1:-6399443 Msa0713920:CDS
AGAAATTGATGCATGTAAAG+GGG 0.733317 5_1:-6399120 Msa0713920:CDS
GTCTCATGATGTATGCAACG+AGG 0.768233 5_1:-6402824 Msa0713920:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCACTTTTATGAAAATTTA+AGG + chr5_1:6400246-6400265 None:intergenic 15.0%
!!! GGTTTTCTTTTTATAAAAAA+AGG - chr5_1:6400418-6400437 Msa0713920:intron 15.0%
!!! AATTTTGAATATCATTTAGA+TGG + chr5_1:6401021-6401040 None:intergenic 15.0%
!! TATACATATTGTAGTTATAA+TGG - chr5_1:6403164-6403183 Msa0713920:intron 15.0%
!!! TAAAAAGAATAAGAGTATAA+TGG - chr5_1:6404321-6404340 Msa0713920:CDS 15.0%
!!! GAGAATTTTATGTTTTTCAT+CGG + chr5_1:6399355-6399374 None:intergenic 20.0%
!!! TCTTCTGTTTTCAAATATAA+AGG + chr5_1:6399744-6399763 None:intergenic 20.0%
!! TTATATTTGAAAACAGAAGA+TGG - chr5_1:6399744-6399763 Msa0713920:CDS 20.0%
!!! TTTTGCTTTGTATATTAGAA+GGG - chr5_1:6399992-6400011 Msa0713920:CDS 20.0%
!! TTAAGATTATAATGCATACA+AGG + chr5_1:6400324-6400343 None:intergenic 20.0%
!!! AAAGAAAATGCTTTTTGTTT+TGG - chr5_1:6400454-6400473 Msa0713920:intron 20.0%
!! TCGTAAATTGTAATAAGTAA+TGG - chr5_1:6400487-6400506 Msa0713920:intron 20.0%
!! CGTAAATTGTAATAAGTAAT+GGG - chr5_1:6400488-6400507 Msa0713920:intron 20.0%
!!! TCAAAATTTTCAGTTTAACA+AGG - chr5_1:6401033-6401052 Msa0713920:intron 20.0%
!!! TTTAATTGAAAATTTTCCAG+AGG + chr5_1:6401865-6401884 None:intergenic 20.0%
!! GAAAAAAACAACATTTCTAA+AGG + chr5_1:6402011-6402030 None:intergenic 20.0%
!! TAAAATGAAACAAGCAATTT+AGG + chr5_1:6402384-6402403 None:intergenic 20.0%
!!! TTCAACTTCTTTTTTTCTTA+TGG - chr5_1:6402589-6402608 Msa0713920:intron 20.0%
!!! TTTTTATAAACAGACTGTAT+TGG - chr5_1:6402902-6402921 Msa0713920:CDS 20.0%
!! AAAATCAAAATTCCACAAAA+AGG - chr5_1:6403069-6403088 Msa0713920:CDS 20.0%
!! AAATTATAATTTGACTGAGA+TGG + chr5_1:6403280-6403299 None:intergenic 20.0%
!!! TTGTCTAAATCTTTTTGTAT+AGG - chr5_1:6403653-6403672 Msa0713920:CDS 20.0%
!! AATTAAATCAAGCAAGTTAT+TGG + chr5_1:6404002-6404021 None:intergenic 20.0%
!! TTTATGTTTTTCATCGGATT+GGG + chr5_1:6399349-6399368 None:intergenic 25.0%
!! TTTTATGTTTTTCATCGGAT+TGG + chr5_1:6399350-6399369 None:intergenic 25.0%
! GAAAAATCAAAAACCTTTCT+CGG + chr5_1:6399426-6399445 None:intergenic 25.0%
!! GCATGATAATTTGATTGTTT+TGG - chr5_1:6399473-6399492 Msa0713920:CDS 25.0%
!!! TAATTTGATTGTTTTGGAAG+CGG - chr5_1:6399479-6399498 Msa0713920:CDS 25.0%
!! ATTTGAAACTGTTGTTAAAC+AGG - chr5_1:6399706-6399725 Msa0713920:CDS 25.0%
!! CTTTTGCTTTGTATATTAGA+AGG - chr5_1:6399991-6400010 Msa0713920:CDS 25.0%
!! TTTGTATATTAGAAGGGTTT+TGG - chr5_1:6399998-6400017 Msa0713920:CDS 25.0%
!! TTGTATATTAGAAGGGTTTT+GGG - chr5_1:6399999-6400018 Msa0713920:CDS 25.0%
! TTGATTATAAGCTGGTATAT+AGG + chr5_1:6400378-6400397 None:intergenic 25.0%
!! CTTTACCTTCTTTTCAATAT+AGG - chr5_1:6400568-6400587 Msa0713920:CDS 25.0%
! TAATTTCCCAAAATAGATGA+AGG + chr5_1:6400781-6400800 None:intergenic 25.0%
!! ATCTTTGTTATAATTGGTGA+CGG + chr5_1:6400806-6400825 None:intergenic 25.0%
!! GTAAGCATCTTTGTTATAAT+TGG + chr5_1:6400812-6400831 None:intergenic 25.0%
! ATTAGCAAGTACATTAGATA+CGG + chr5_1:6401087-6401106 None:intergenic 25.0%
! CTAATATAATCAATTCTCAC+TGG - chr5_1:6401102-6401121 Msa0713920:intron 25.0%
! AAATTTAATGTGACAACGAT+AGG + chr5_1:6401787-6401806 None:intergenic 25.0%
! TATCGTTGTCACATTAAATT+TGG - chr5_1:6401786-6401805 Msa0713920:CDS 25.0%
! ATCGTTGTCACATTAAATTT+GGG - chr5_1:6401787-6401806 Msa0713920:CDS 25.0%
!!! CGTTTTGTACATAGTTTTAT+TGG - chr5_1:6402232-6402251 Msa0713920:CDS 25.0%
!!! ACCATTTTTACGAATTATAG+AGG - chr5_1:6402466-6402485 Msa0713920:CDS 25.0%
! ACCTCTATAATTCGTAAAAA+TGG + chr5_1:6402470-6402489 None:intergenic 25.0%
!! TTTTTACGAATTATAGAGGT+CGG - chr5_1:6402470-6402489 Msa0713920:CDS 25.0%
!! ATGACTAATATAAGTTTTCC+TGG - chr5_1:6402678-6402697 Msa0713920:CDS 25.0%
!! ATATAAGTTTTCCTGGATTT+TGG - chr5_1:6402685-6402704 Msa0713920:CDS 25.0%
!!! TTTTTTCCCTTGAAATTTTC+AGG - chr5_1:6402773-6402792 Msa0713920:CDS 25.0%
! ACATCAATTCATCAATACAA+TGG + chr5_1:6402878-6402897 None:intergenic 25.0%
! AAAATCGAAGTTCCAAAAAA+AGG - chr5_1:6403033-6403052 Msa0713920:CDS 25.0%
! TGTCTGTATAAATAGTTAGA+TGG - chr5_1:6403314-6403333 Msa0713920:intron 25.0%
! GTCTGTATAAATAGTTAGAT+GGG - chr5_1:6403315-6403334 Msa0713920:intron 25.0%
! TAAATAGTTAGATGGGTAAT+TGG - chr5_1:6403322-6403341 Msa0713920:intron 25.0%
! AAATAGTTAGATGGGTAATT+GGG - chr5_1:6403323-6403342 Msa0713920:intron 25.0%
!!! TCTAGTTCTATTTTGAATTC+TGG - chr5_1:6403376-6403395 Msa0713920:intron 25.0%
! ATAATGACTTGAAGATACAA+TGG + chr5_1:6403437-6403456 None:intergenic 25.0%
! TGTATCTTCAAGTCATTATT+AGG - chr5_1:6403438-6403457 Msa0713920:intron 25.0%
!! ATTTGATTTAACCATGTGTT+TGG - chr5_1:6403532-6403551 Msa0713920:intron 25.0%
! TGAAGTTACAATTTCCAAAA+TGG - chr5_1:6404176-6404195 Msa0713920:CDS 25.0%
! AAATCTATCATAAGATAGAG+AGG - chr5_1:6404497-6404516 Msa0713920:CDS 25.0%
!!! TTTAGAGGATTTTAGGGTTA+AGG + chr5_1:6399115-6399134 None:intergenic 30.0%
! AGAGGATTTAGAGGATTTTA+GGG + chr5_1:6399121-6399140 None:intergenic 30.0%
GGGTTTGATTGAATGAATTA+GGG + chr5_1:6399151-6399170 None:intergenic 30.0%
AGGGTTTGATTGAATGAATT+AGG + chr5_1:6399152-6399171 None:intergenic 30.0%
TTGAGACTATATGTGAAGAA+TGG - chr5_1:6399523-6399542 Msa0713920:CDS 30.0%
GTTGACATTGAAGAAAAAAG+TGG - chr5_1:6399614-6399633 Msa0713920:CDS 30.0%
!!! AAGTTTCTGGCTTTTTTGTT+TGG - chr5_1:6399771-6399790 Msa0713920:CDS 30.0%
!!! AGTTTCTGGCTTTTTTGTTT+GGG - chr5_1:6399772-6399791 Msa0713920:CDS 30.0%
AACACAGTAAAATGTATGCT+GGG + chr5_1:6400138-6400157 None:intergenic 30.0%
AAACACAGTAAAATGTATGC+TGG + chr5_1:6400139-6400158 None:intergenic 30.0%
AGAAAATGTTTGTGCAACAT+TGG - chr5_1:6400214-6400233 Msa0713920:intron 30.0%
AAGTTGAGCTCTCTTAAATT+TGG - chr5_1:6400396-6400415 Msa0713920:intron 30.0%
AGTTGAGCTCTCTTAAATTT+GGG - chr5_1:6400397-6400416 Msa0713920:intron 30.0%
TTAGCAAGTACATTAGATAC+GGG + chr5_1:6401086-6401105 None:intergenic 30.0%
ATACTTGCAAAATATTGCAC+CGG + chr5_1:6401319-6401338 None:intergenic 30.0%
TAAAACTCATCTTATGGAAC+TGG - chr5_1:6401359-6401378 Msa0713920:intron 30.0%
! TTGATCGCCAATCTAAAATT+AGG - chr5_1:6401682-6401701 Msa0713920:CDS 30.0%
!! ACATAAGTTGTTGCTTTCTT+TGG - chr5_1:6401710-6401729 Msa0713920:CDS 30.0%
!! CATAAGTTGTTGCTTTCTTT+GGG - chr5_1:6401711-6401730 Msa0713920:CDS 30.0%
TCGTTGTCACATTAAATTTG+GGG - chr5_1:6401788-6401807 Msa0713920:CDS 30.0%
AGGAAAAAATCTAAATCCTC+TGG - chr5_1:6401846-6401865 Msa0713920:CDS 30.0%
GATGATTATTTAGTAGCTGT+AGG - chr5_1:6401918-6401937 Msa0713920:CDS 30.0%
!!! GTTGTTTTTTTCGCTTAAGA+TGG - chr5_1:6402019-6402038 Msa0713920:CDS 30.0%
TTCTTCTACATTACTTTCAG+AGG - chr5_1:6402199-6402218 Msa0713920:CDS 30.0%
! TTTAAAATTCATCTACCCTC+TGG - chr5_1:6402266-6402285 Msa0713920:CDS 30.0%
!! TTGCTTGTTTCATTTTAACG+TGG - chr5_1:6402387-6402406 Msa0713920:CDS 30.0%
GAATGCAAAACAAAATCACA+AGG + chr5_1:6402526-6402545 None:intergenic 30.0%
TAAGTGATGCATTGAGTAAA+AGG + chr5_1:6402561-6402580 None:intergenic 30.0%
AATTGACGTGAAATTATAGC+AGG + chr5_1:6402656-6402675 None:intergenic 30.0%
! CATCTTTTGTTCAGTTTCAT+TGG - chr5_1:6402715-6402734 Msa0713920:CDS 30.0%
!! TTGGTTGATTTTCAATTGTC+TGG - chr5_1:6402734-6402753 Msa0713920:CDS 30.0%
CAATATCATAACAATCATGC+CGG + chr5_1:6402802-6402821 None:intergenic 30.0%
CAATTCATCAATACAATGGA+AGG + chr5_1:6402874-6402893 None:intergenic 30.0%
AACTGCTTGGAAAAACTATT+TGG - chr5_1:6402948-6402967 Msa0713920:CDS 30.0%
TCCAAAAAAAGGAAGAAAAC+AGG - chr5_1:6403044-6403063 Msa0713920:CDS 30.0%
CCAAAAAAAGGAAGAAAACA+GGG - chr5_1:6403045-6403064 Msa0713920:CDS 30.0%
GTTTCATTTGTGAAGGAATA+TGG - chr5_1:6403462-6403481 Msa0713920:intron 30.0%
CTAATCCACACTATAAAATC+CGG - chr5_1:6403494-6403513 Msa0713920:intron 30.0%
AAATGAAAACAGATAGATGC+CGG + chr5_1:6403516-6403535 None:intergenic 30.0%
AAGAATAATCCATTGTTGTG+AGG + chr5_1:6403776-6403795 None:intergenic 30.0%
! GATATGTTGTATGCATTTTG+AGG + chr5_1:6403807-6403826 None:intergenic 30.0%
TCATCACAGAATTGAATTTG+AGG - chr5_1:6403850-6403869 Msa0713920:CDS 30.0%
TGTTTCAACTGAATCATGTT+TGG - chr5_1:6404021-6404040 Msa0713920:CDS 30.0%
GTTTCAACTGAATCATGTTT+GGG - chr5_1:6404022-6404041 Msa0713920:CDS 30.0%
TAAATGTTCACTTCCACTTT+CGG + chr5_1:6404140-6404159 None:intergenic 30.0%
TTGAATGTCGAGAATTTATC+TGG + chr5_1:6404271-6404290 None:intergenic 30.0%
CTCGACATTCAATAAACTTA+CGG - chr5_1:6404279-6404298 Msa0713920:CDS 30.0%
GAGAAATTGATGCATGTAAA+GGG - chr5_1:6404553-6404572 Msa0713920:CDS 30.0%
AGAAATTGATGCATGTAAAG+GGG - chr5_1:6404554-6404573 Msa0713920:CDS 30.0%
ACGTATCATCTATATGAAAC+TGG - chr5_1:6404595-6404614 Msa0713920:CDS 30.0%
TCATCTATATGAAACTGGAA+AGG - chr5_1:6404600-6404619 Msa0713920:CDS 30.0%
GCTAAAGAGATGAATTCTTG+TGG + chr5_1:6399087-6399106 None:intergenic 35.0%
! GAGAGGATTTAGAGGATTTT+AGG + chr5_1:6399122-6399141 None:intergenic 35.0%
!!! ATGAATTAGGGTTTTGAGAG+AGG + chr5_1:6399139-6399158 None:intergenic 35.0%
GAAGAAATGAGATTGGAAGA+GGG + chr5_1:6399171-6399190 None:intergenic 35.0%
TGAAGAAATGAGATTGGAAG+AGG + chr5_1:6399172-6399191 None:intergenic 35.0%
ATTGAGGAAGGATTGAATTG+TGG + chr5_1:6399226-6399245 None:intergenic 35.0%
!!! GATTTTTCTGATTTGCTACC+TGG - chr5_1:6399438-6399457 Msa0713920:CDS 35.0%
AGACTATATGTGAAGAATGG+TGG - chr5_1:6399526-6399545 Msa0713920:CDS 35.0%
! TATATGTGAAGAATGGTGGA+AGG - chr5_1:6399530-6399549 Msa0713920:CDS 35.0%
AACGATCTCGATAGAACAAA+AGG + chr5_1:6399597-6399616 None:intergenic 35.0%
AGAAAAAAGTGGATGTGCAT+AGG - chr5_1:6399625-6399644 Msa0713920:CDS 35.0%
GAAAAAAGTGGATGTGCATA+GGG - chr5_1:6399626-6399645 Msa0713920:CDS 35.0%
AGAAGATGGAAGAAAGTTTC+TGG - chr5_1:6399758-6399777 Msa0713920:CDS 35.0%
TTCTTGCAGGATTTGATTGA+GGG - chr5_1:6399945-6399964 Msa0713920:CDS 35.0%
!!! TATATTAGAAGGGTTTTGGG+AGG - chr5_1:6400002-6400021 Msa0713920:CDS 35.0%
!!! ATATTAGAAGGGTTTTGGGA+GGG - chr5_1:6400003-6400022 Msa0713920:intron 35.0%
TGTAATGCAAAGTCTTCAGA+TGG + chr5_1:6400184-6400203 None:intergenic 35.0%
TCTGAAGACTTTGCATTACA+CGG - chr5_1:6400184-6400203 Msa0713920:intron 35.0%
ATGTTTGTGCAACATTGGAT+TGG - chr5_1:6400219-6400238 Msa0713920:intron 35.0%
AAGCTTACAACATAGCATCA+CGG + chr5_1:6400275-6400294 None:intergenic 35.0%
CTGTAATCTTATGACTTTCG+AGG - chr5_1:6400352-6400371 Msa0713920:intron 35.0%
AGCTCAACTTGATTATAAGC+TGG + chr5_1:6400386-6400405 None:intergenic 35.0%
TGCAGCCTATATTGAAAAGA+AGG + chr5_1:6400576-6400595 None:intergenic 35.0%
! TGTATCCTTATCCTCTTTTG+AGG + chr5_1:6400666-6400685 None:intergenic 35.0%
ACAGCAATTGTTCTAACTTC+TGG + chr5_1:6400740-6400759 None:intergenic 35.0%
! AGTTAGAACAATTGCTGTTG+AGG - chr5_1:6400742-6400761 Msa0713920:CDS 35.0%
! GTTAGAACAATTGCTGTTGA+GGG - chr5_1:6400743-6400762 Msa0713920:CDS 35.0%
! TCGTGTCCTTCATCTATTTT+GGG - chr5_1:6400772-6400791 Msa0713920:intron 35.0%
GTACATTAGATACGGGAATT+AGG + chr5_1:6401079-6401098 None:intergenic 35.0%
GCTGCATTACACTAGTAAAA+AGG - chr5_1:6401283-6401302 Msa0713920:intron 35.0%
ACTAGTAAAAAGGTCTCCAA+TGG - chr5_1:6401293-6401312 Msa0713920:intron 35.0%
! ATTTTGCAAGTATGCCATCT+CGG - chr5_1:6401326-6401345 Msa0713920:intron 35.0%
! AGCGTCTAAAACTCATCTTA+TGG - chr5_1:6401353-6401372 Msa0713920:intron 35.0%
TGCAGTAAGTAACTCTTTGA+GGG + chr5_1:6401508-6401527 None:intergenic 35.0%
AAAGTGGAAGGTTTACTAAC+TGG - chr5_1:6401531-6401550 Msa0713920:CDS 35.0%
AAGTGGAAGGTTTACTAACT+GGG - chr5_1:6401532-6401551 Msa0713920:CDS 35.0%
! GTGCAGACCTAATTTTAGAT+TGG + chr5_1:6401692-6401711 None:intergenic 35.0%
TTTAGTAGCTGTAACACTGT+GGG + chr5_1:6401826-6401845 None:intergenic 35.0%
! TTTTAGTAGCTGTAACACTG+TGG + chr5_1:6401827-6401846 None:intergenic 35.0%
ACAGTGTTACAGCTACTAAA+AGG - chr5_1:6401826-6401845 Msa0713920:CDS 35.0%
AGATCTAAAGATTGCTTTCC+TGG + chr5_1:6401985-6402004 None:intergenic 35.0%
! CATAGACATATCTCCTGTTT+TGG - chr5_1:6402082-6402101 Msa0713920:CDS 35.0%
!!! ATCTCCTGTTTTGGCATATA+TGG - chr5_1:6402091-6402110 Msa0713920:CDS 35.0%
!! CAAATGACGGTTGATAATGT+TGG - chr5_1:6402125-6402144 Msa0713920:CDS 35.0%
TGAAAAGAATGGTGATTCCA+AGG - chr5_1:6402157-6402176 Msa0713920:CDS 35.0%
GAAAAGAATGGTGATTCCAA+GGG - chr5_1:6402158-6402177 Msa0713920:CDS 35.0%
AAAAGAATGGTGATTCCAAG+GGG - chr5_1:6402159-6402178 Msa0713920:CDS 35.0%
!! AATCTTAGTTTTCTTCCCCT+TGG + chr5_1:6402177-6402196 None:intergenic 35.0%
AAACTAGCACAGTGCAAATT+GGG + chr5_1:6402432-6402451 None:intergenic 35.0%
TAAACTAGCACAGTGCAAAT+TGG + chr5_1:6402433-6402452 None:intergenic 35.0%
CGGAAACCTGAAAATTTCAA+GGG + chr5_1:6402782-6402801 None:intergenic 35.0%
!!! CCTTGAAATTTTCAGGTTTC+CGG - chr5_1:6402780-6402799 Msa0713920:CDS 35.0%
GTTAAATGAATGAGTGAGCT+AGG + chr5_1:6402845-6402864 None:intergenic 35.0%
CACTGTACAATATCACAATG+TGG - chr5_1:6402980-6402999 Msa0713920:CDS 35.0%
CAATGTGGATTCACATAACT+TGG - chr5_1:6402995-6403014 Msa0713920:CDS 35.0%
ATAACTTGGAGTCAACAACT+GGG - chr5_1:6403009-6403028 Msa0713920:CDS 35.0%
! CCCTGTTTTCTTCCTTTTTT+TGG + chr5_1:6403048-6403067 None:intergenic 35.0%
AAAATTCCACAAAAAGGCGA+AGG - chr5_1:6403075-6403094 Msa0713920:CDS 35.0%
! TTTTCTCACCTCCATTACTT+GGG + chr5_1:6403124-6403143 None:intergenic 35.0%
! ATTTTCTCACCTCCATTACT+TGG + chr5_1:6403125-6403144 None:intergenic 35.0%
ATTAGGCGTTTCATTTGTGA+AGG - chr5_1:6403455-6403474 Msa0713920:intron 35.0%
!! ATAGTGTGGATTAGCCAAAA+GGG + chr5_1:6403488-6403507 None:intergenic 35.0%
!! TATAGTGTGGATTAGCCAAA+AGG + chr5_1:6403489-6403508 None:intergenic 35.0%
AACAAAAAGAGCCAAACACA+TGG + chr5_1:6403546-6403565 None:intergenic 35.0%
CAGAATTGAATTTGAGGAAG+AGG - chr5_1:6403856-6403875 Msa0713920:CDS 35.0%
! AATGTGATACTGACTGATTC+CGG - chr5_1:6403938-6403957 Msa0713920:CDS 35.0%
! GAAGGCTTTTGATGTCATTA+TGG + chr5_1:6403972-6403991 None:intergenic 35.0%
!!! ACAGTTTTGGCTACAATCAA+GGG + chr5_1:6404202-6404221 None:intergenic 35.0%
!! AAGAGTATAATGGATGCAGT+TGG - chr5_1:6404331-6404350 Msa0713920:CDS 35.0%
!! AGAGTATAATGGATGCAGTT+GGG - chr5_1:6404332-6404351 Msa0713920:CDS 35.0%
!! TTCTTGGTTTGTTCACTTGT+TGG - chr5_1:6404361-6404380 Msa0713920:CDS 35.0%
!! TCTTGGTTTGTTCACTTGTT+GGG - chr5_1:6404362-6404381 Msa0713920:CDS 35.0%
GTCATCACGATTAAACAACT+TGG + chr5_1:6404440-6404459 None:intergenic 35.0%
AGTTGTTTAATCGTGATGAC+AGG - chr5_1:6404440-6404459 Msa0713920:CDS 35.0%
GTTGTTTAATCGTGATGACA+GGG - chr5_1:6404441-6404460 Msa0713920:CDS 35.0%
TGACATGATGTTATCTTCTC+TGG - chr5_1:6404471-6404490 Msa0713920:CDS 35.0%
AGCTAGTAATAACGATGAAC+TGG - chr5_1:6404531-6404550 Msa0713920:CDS 35.0%
GGAGAAATTGATGCATGTAA+AGG - chr5_1:6404552-6404571 Msa0713920:CDS 35.0%
TATAGATGATACGTCCAAAG+AGG + chr5_1:6404589-6404608 None:intergenic 35.0%
!!! GGATTTTAGGGTTAAGGTTG+TGG + chr5_1:6399109-6399128 None:intergenic 40.0%
!!! GGTTTTGAGAGAGGATTTAG+AGG + chr5_1:6399130-6399149 None:intergenic 40.0%
AGGGAGTGAAGAAATGAGAT+TGG + chr5_1:6399178-6399197 None:intergenic 40.0%
! TGTTCGATTCGAGAAGATTG+AGG + chr5_1:6399242-6399261 None:intergenic 40.0%
!! TTTTCATCGGATTGGGAACT+GGG + chr5_1:6399342-6399361 None:intergenic 40.0%
!! TTTTTCATCGGATTGGGAAC+TGG + chr5_1:6399343-6399362 None:intergenic 40.0%
!! AGCGGATTCGATTTTGTCTT+CGG - chr5_1:6399497-6399516 Msa0713920:CDS 40.0%
! ATGGTGGAAGGAGAATTTAC+CGG - chr5_1:6399542-6399561 Msa0713920:CDS 40.0%
TAGGGTTTATATGTTTCGCG+AGG - chr5_1:6399644-6399663 Msa0713920:CDS 40.0%
GGGATATATTGTTTCGAGCA+TGG - chr5_1:6399880-6399899 Msa0713920:CDS 40.0%
ATTCCACTCCTTGAATCTTC+TGG + chr5_1:6399915-6399934 None:intergenic 40.0%
TCAAGGAGTGGAATTGAGAA+TGG - chr5_1:6399921-6399940 Msa0713920:CDS 40.0%
CAAGGAGTGGAATTGAGAAT+GGG - chr5_1:6399922-6399941 Msa0713920:CDS 40.0%
! AATTGAGAATGGGTTCTTGC+AGG - chr5_1:6399932-6399951 Msa0713920:CDS 40.0%
GTTCTTGCAGGATTTGATTG+AGG - chr5_1:6399944-6399963 Msa0713920:CDS 40.0%
CAAAAGTTCCAGAACTTGCA+TGG + chr5_1:6399977-6399996 None:intergenic 40.0%
TGGGAGGGTTTATTAATCAG+AGG - chr5_1:6400018-6400037 Msa0713920:intron 40.0%
ATTAATCAGAGGACCGTTGA+TGG - chr5_1:6400029-6400048 Msa0713920:intron 40.0%
TTAATCAGAGGACCGTTGAT+GGG - chr5_1:6400030-6400049 Msa0713920:intron 40.0%
TAGTTTCTCAACCCCATCAA+CGG + chr5_1:6400045-6400064 None:intergenic 40.0%
CTGAAGACTTTGCATTACAC+GGG - chr5_1:6400185-6400204 Msa0713920:intron 40.0%
! GAATGCTTTGCATCTGCTTT+TGG - chr5_1:6400613-6400632 Msa0713920:CDS 40.0%
!!! TTATCCTCTTTTGAGGCATC+GGG + chr5_1:6400659-6400678 None:intergenic 40.0%
!!! CTTATCCTCTTTTGAGGCAT+CGG + chr5_1:6400660-6400679 None:intergenic 40.0%
! GTCGTGTCCTTCATCTATTT+TGG - chr5_1:6400771-6400790 Msa0713920:intron 40.0%
ATGATGTATGCAACGAGGTA+AGG - chr5_1:6400855-6400874 Msa0713920:intron 40.0%
GTAAGGCTTTCTACGTTGAA+TGG - chr5_1:6400872-6400891 Msa0713920:intron 40.0%
TTAAGGACTTCATGAGAGTG+GGG + chr5_1:6400920-6400939 None:intergenic 40.0%
CTTAAGGACTTCATGAGAGT+GGG + chr5_1:6400921-6400940 None:intergenic 40.0%
! ATCAATTCTCACTGGTTAGC+TGG - chr5_1:6401110-6401129 Msa0713920:intron 40.0%
! TTTGTTAGCTTCTGAGCTAC+AGG + chr5_1:6401207-6401226 None:intergenic 40.0%
! ACTATTGAGGGAAAGTACGA+AGG + chr5_1:6401240-6401259 None:intergenic 40.0%
CTTGTGACAAAACCAAACTC+AGG + chr5_1:6401395-6401414 None:intergenic 40.0%
CTGAATGCAGATCAGATAGA+GGG - chr5_1:6401420-6401439 Msa0713920:intron 40.0%
AGTCAGTGAACCATGCTATA+TGG - chr5_1:6401479-6401498 Msa0713920:CDS 40.0%
CTGCAGTAAGTAACTCTTTG+AGG + chr5_1:6401509-6401528 None:intergenic 40.0%
GTTACTTACTGCAGAGAAAG+TGG - chr5_1:6401515-6401534 Msa0713920:CDS 40.0%
AGTGGAAGGTTTACTAACTG+GGG - chr5_1:6401533-6401552 Msa0713920:CDS 40.0%
CACATTATCTGGACAAACAG+TGG + chr5_1:6401601-6401620 None:intergenic 40.0%
CACTGTTTGTCCAGATAATG+TGG - chr5_1:6401599-6401618 Msa0713920:CDS 40.0%
CAACATCTTCAGGTAAACCA+TGG + chr5_1:6401665-6401684 None:intergenic 40.0%
!! AAGTTGTTGCTTTCTTTGGG+AGG - chr5_1:6401714-6401733 Msa0713920:CDS 40.0%
! AAGTCAGCATTGAGCATTGT+GGG - chr5_1:6402048-6402067 Msa0713920:CDS 40.0%
GGCACAAGTAGTGAAAAGAA+TGG - chr5_1:6402146-6402165 Msa0713920:CDS 40.0%
GAAGAAAATGCACAACCAGA+GGG + chr5_1:6402284-6402303 None:intergenic 40.0%
AGAAGAAAATGCACAACCAG+AGG + chr5_1:6402285-6402304 None:intergenic 40.0%
TGCATGTCAAAGCCAAATTG+CGG - chr5_1:6402312-6402331 Msa0713920:CDS 40.0%
TGCAATGAATACCCGCAATT+TGG + chr5_1:6402327-6402346 None:intergenic 40.0%
CAGTGCAAATTGGGAATGAA+AGG + chr5_1:6402423-6402442 None:intergenic 40.0%
GAAATTATAGCAGGCCAGAA+TGG + chr5_1:6402647-6402666 None:intergenic 40.0%
CCGGAAACCTGAAAATTTCA+AGG + chr5_1:6402783-6402802 None:intergenic 40.0%
CATAACTTGGAGTCAACAAC+TGG - chr5_1:6403008-6403027 Msa0713920:CDS 40.0%
TGGGTAATTGGGTAGACATA+TGG - chr5_1:6403334-6403353 Msa0713920:intron 40.0%
GGGTAATTGGGTAGACATAT+GGG - chr5_1:6403335-6403354 Msa0713920:intron 40.0%
AGAAGAAACCTGTAGAGAAG+TGG + chr5_1:6403402-6403421 None:intergenic 40.0%
! AGATGCCGGATTTTATAGTG+TGG + chr5_1:6403502-6403521 None:intergenic 40.0%
TGAACTATGTGTATCGTCTC+TGG - chr5_1:6403604-6403623 Msa0713920:CDS 40.0%
ACCTCAACAAGTGCTTTGTA+AGG - chr5_1:6403691-6403710 Msa0713920:CDS 40.0%
! ACCTTACAAAGCACTTGTTG+AGG + chr5_1:6403695-6403714 None:intergenic 40.0%
!! TACTGCTGTTCTGAAGTTCA+TGG - chr5_1:6403724-6403743 Msa0713920:CDS 40.0%
! TGTTTTGCTCCTCACAACAA+TGG - chr5_1:6403764-6403783 Msa0713920:CDS 40.0%
CAATTCTGTGATGATACAGC+TGG + chr5_1:6403844-6403863 None:intergenic 40.0%
! CATAGCTGAAAGAGCTTTTC+AGG + chr5_1:6403904-6403923 None:intergenic 40.0%
! GGCTTTTGATGTCATTATGG+AGG + chr5_1:6403969-6403988 None:intergenic 40.0%
CAAGTTATTGGCAAGAGTGA+AGG + chr5_1:6403990-6404009 None:intergenic 40.0%
!!! CACAGTTTTGGCTACAATCA+AGG + chr5_1:6404203-6404222 None:intergenic 40.0%
CAATAAACTTACGGCTATGC+TGG - chr5_1:6404288-6404307 Msa0713920:CDS 40.0%
!! GAGTATAATGGATGCAGTTG+GGG - chr5_1:6404333-6404352 Msa0713920:CDS 40.0%
! TGCAGTTGGGGATATTTTCT+TGG - chr5_1:6404345-6404364 Msa0713920:CDS 40.0%
! ACTTGTTGGGCTAGAACAAA+AGG - chr5_1:6404375-6404394 Msa0713920:CDS 40.0%
AGAACAAAAGGACTTTGAGC+TGG - chr5_1:6404387-6404406 Msa0713920:CDS 40.0%
TTAATCGTGATGACAGGGAT+TGG - chr5_1:6404446-6404465 Msa0713920:CDS 40.0%
TAATCGTGATGACAGGGATT+GGG - chr5_1:6404447-6404466 Msa0713920:CDS 40.0%
!! GTGATGGATTCGTAGAGAGA+GGG + chr5_1:6399201-6399220 None:intergenic 45.0%
! GGATTGAATTGTGGTGGTGA+TGG + chr5_1:6399217-6399236 None:intergenic 45.0%
GAGGAAGGATTGAATTGTGG+TGG + chr5_1:6399223-6399242 None:intergenic 45.0%
CGATTCGAGAAGATTGAGGA+AGG + chr5_1:6399238-6399257 None:intergenic 45.0%
TCATGCAATGCTTGAACTCC+AGG + chr5_1:6399459-6399478 None:intergenic 45.0%
! GCGGATTCGATTTTGTCTTC+GGG - chr5_1:6399498-6399517 Msa0713920:CDS 45.0%
! CGGATTCGATTTTGTCTTCG+GGG - chr5_1:6399499-6399518 Msa0713920:CDS 45.0%
TTCGAAGTCAAACAACGCGA+AGG + chr5_1:6399670-6399689 None:intergenic 45.0%
!! CTTCGAAGATGAGAGTATCG+AGG - chr5_1:6399683-6399702 Msa0713920:CDS 45.0%
!! TTTGGGTTGAGTGATCAGCT+TGG - chr5_1:6399789-6399808 Msa0713920:CDS 45.0%
!! TTGGGTTGAGTGATCAGCTT+GGG - chr5_1:6399790-6399809 Msa0713920:CDS 45.0%
ATTCGTTCGCAGATTCCGTA+TGG - chr5_1:6399831-6399850 Msa0713920:CDS 45.0%
!! AACATCGACTTCCGTCCATA+CGG + chr5_1:6399849-6399868 None:intergenic 45.0%
AAGTCGATGTTGGAGGCTTA+TGG - chr5_1:6399858-6399877 Msa0713920:CDS 45.0%
AGTCGATGTTGGAGGCTTAT+GGG - chr5_1:6399859-6399878 Msa0713920:CDS 45.0%
AAGCTGTGCCAGAAGATTCA+AGG - chr5_1:6399904-6399923 Msa0713920:CDS 45.0%
GGTTCTATCCATGCAAGTTC+TGG - chr5_1:6399966-6399985 Msa0713920:CDS 45.0%
TAATCAGAGGACCGTTGATG+GGG - chr5_1:6400031-6400050 Msa0713920:intron 45.0%
TTGCCGAGCCAGTCATATTT+CGG - chr5_1:6400075-6400094 Msa0713920:intron 45.0%
! AGACCGAAATATGACTGGCT+CGG + chr5_1:6400081-6400100 None:intergenic 45.0%
TGCAGAGACCGAAATATGAC+TGG + chr5_1:6400086-6400105 None:intergenic 45.0%
AGTCATATTTCGGTCTCTGC+AGG - chr5_1:6400085-6400104 Msa0713920:intron 45.0%
CGATGCCTCAAAAGAGGATA+AGG - chr5_1:6400658-6400677 Msa0713920:CDS 45.0%
GTCTCATGATGTATGCAACG+AGG - chr5_1:6400850-6400869 Msa0713920:intron 45.0%
CCTTAAGGACTTCATGAGAG+TGG + chr5_1:6400922-6400941 None:intergenic 45.0%
CCACTCTCATGAAGTCCTTA+AGG - chr5_1:6400919-6400938 Msa0713920:intron 45.0%
AGCATTAAGTGACCCAGTCT+TGG + chr5_1:6400953-6400972 None:intergenic 45.0%
AAGACTGGGTCACTTAATGC+TGG - chr5_1:6400952-6400971 Msa0713920:intron 45.0%
CCATAGCAACTTGTACTGTG+AGG + chr5_1:6400985-6401004 None:intergenic 45.0%
CCTCACAGTACAAGTTGCTA+TGG - chr5_1:6400982-6401001 Msa0713920:intron 45.0%
CGTTGTTGTGTGATTCCTGT+AGG - chr5_1:6401134-6401153 Msa0713920:intron 45.0%
TGTTGTGTGATTCCTGTAGG+TGG - chr5_1:6401137-6401156 Msa0713920:intron 45.0%
TCCTCAATGGGCACTATTGA+GGG + chr5_1:6401252-6401271 None:intergenic 45.0%
CGATTACATGCCTCCTCAAT+GGG + chr5_1:6401264-6401283 None:intergenic 45.0%
GTAAAAAGGTCTCCAATGGC+CGG - chr5_1:6401297-6401316 Msa0713920:intron 45.0%
! CAAAATATTGCACCGGCCAT+TGG + chr5_1:6401312-6401331 None:intergenic 45.0%
! GGTCAAAGCATTCCTGAGTT+TGG - chr5_1:6401380-6401399 Msa0713920:intron 45.0%
GCTGAATGCAGATCAGATAG+AGG - chr5_1:6401419-6401438 Msa0713920:intron 45.0%
!! TTGAGGGCATCCATATAGCA+TGG + chr5_1:6401492-6401511 None:intergenic 45.0%
CTTACTGCAGAGAAAGTGGA+AGG - chr5_1:6401519-6401538 Msa0713920:CDS 45.0%
GTTTGTCCAGATAATGTGGC+AGG - chr5_1:6401603-6401622 Msa0713920:CDS 45.0%
AGAAGTCCTGCCACATTATC+TGG + chr5_1:6401612-6401631 None:intergenic 45.0%
AGTGTTGTCACAAACTGCCA+TGG - chr5_1:6401645-6401664 Msa0713920:CDS 45.0%
GATTGGCGATCAACATCTTC+AGG + chr5_1:6401675-6401694 None:intergenic 45.0%
CTTATGCAGCAGGGTTGTTA+AGG + chr5_1:6401760-6401779 None:intergenic 45.0%
CTTAACAACCCTGCTGCATA+AGG - chr5_1:6401758-6401777 Msa0713920:CDS 45.0%
TAGTAGCTGTAGGAGTTGCA+TGG - chr5_1:6401928-6401947 Msa0713920:CDS 45.0%
! TAGAGACTTGCTTCAGCATG+AGG - chr5_1:6401956-6401975 Msa0713920:CDS 45.0%
! GAAGTCAGCATTGAGCATTG+TGG - chr5_1:6402047-6402066 Msa0713920:CDS 45.0%
AGGGCCATATATGCCAAAAC+AGG + chr5_1:6402098-6402117 None:intergenic 45.0%
AACCGTCATTTGCAGAGCAA+GGG + chr5_1:6402117-6402136 None:intergenic 45.0%
GCATGTCAAAGCCAAATTGC+GGG - chr5_1:6402313-6402332 Msa0713920:CDS 45.0%
!! GCAGCGAATTTTGACCATTC+TGG - chr5_1:6402630-6402649 Msa0713920:intron 45.0%
GATGCAGACAACCAAAATCC+AGG + chr5_1:6402699-6402718 None:intergenic 45.0%
! AGATAGCCTTCGCCTTTTTG+TGG + chr5_1:6403084-6403103 None:intergenic 45.0%
AGGCTATCTCTGACAAATGC+TGG - chr5_1:6403095-6403114 Msa0713920:intron 45.0%
GGCTATCTCTGACAAATGCT+GGG - chr5_1:6403096-6403115 Msa0713920:intron 45.0%
AATGCTGGGTACCCAAGTAA+TGG - chr5_1:6403110-6403129 Msa0713920:intron 45.0%
! GTGCTCAAGTTGCATGCATT+TGG + chr5_1:6403205-6403224 None:intergenic 45.0%
TTGAGCACACTGTGCGAAAT+AGG - chr5_1:6403217-6403236 Msa0713920:intron 45.0%
AATTCTGGCCACTTCTCTAC+AGG - chr5_1:6403391-6403410 Msa0713920:intron 45.0%
! GTGAAGGAATATGGCCCTTT+TGG - chr5_1:6403471-6403490 Msa0713920:intron 45.0%
GTTGTGAGGAGCAAAACACA+TGG + chr5_1:6403762-6403781 None:intergenic 45.0%
TGTCATTATGGAGGATCCAC+CGG + chr5_1:6403960-6403979 None:intergenic 45.0%
AAAACTACATCAGGCAGCCA+AGG + chr5_1:6404085-6404104 None:intergenic 45.0%
! TTGGCTGCCTGATGTAGTTT+TGG - chr5_1:6404084-6404103 Msa0713920:CDS 45.0%
!!! CCTGATGTAGTTTTGGCACT+GGG - chr5_1:6404091-6404110 Msa0713920:CDS 45.0%
GTTCTACAACACACCGAAAG+TGG - chr5_1:6404124-6404143 Msa0713920:CDS 45.0%
! GCTACAATCAAGGGCCATTT+TGG + chr5_1:6404193-6404212 None:intergenic 45.0%
TCTGCAGTGAATGAAGGTGA+AGG - chr5_1:6404226-6404245 Msa0713920:CDS 45.0%
AGTGAATGAAGGTGAAGGAG+AGG - chr5_1:6404231-6404250 Msa0713920:CDS 45.0%
GTGAATGAAGGTGAAGGAGA+GGG - chr5_1:6404232-6404251 Msa0713920:CDS 45.0%
AAGGACTTTGAGCTGGCATT+AGG - chr5_1:6404394-6404413 Msa0713920:CDS 45.0%
AATCGTGATGACAGGGATTG+GGG - chr5_1:6404448-6404467 Msa0713920:CDS 45.0%
!!! AATTATAATTTTGTTTTAAA+AGG - chr5_1:6403289-6403308 Msa0713920:intron 5.0%
TGGATTCGTAGAGAGAGGGA+GGG + chr5_1:6399197-6399216 None:intergenic 50.0%
ATGGATTCGTAGAGAGAGGG+AGG + chr5_1:6399198-6399217 None:intergenic 50.0%
!! GGTGATGGATTCGTAGAGAG+AGG + chr5_1:6399202-6399221 None:intergenic 50.0%
! GGGAGGGGTTTGGAGATTTT+CGG + chr5_1:6399268-6399287 None:intergenic 50.0%
!! TGTTTTTGCGGGAAGAGCGA+CGG + chr5_1:6399302-6399321 None:intergenic 50.0%
!! TGGTGGCAGTGGTGTTTTTG+CGG + chr5_1:6399314-6399333 None:intergenic 50.0%
! ATCGGATTGGGAACTGGGTT+CGG + chr5_1:6399337-6399356 None:intergenic 50.0%
TTCTCGGATGCGAAACGCAT+AGG + chr5_1:6399410-6399429 None:intergenic 50.0%
ATGCGTTTCGCATCCGAGAA+AGG - chr5_1:6399410-6399429 Msa0713920:CDS 50.0%
GAAATCAACGATTCGCGCTC+CGG + chr5_1:6399564-6399583 None:intergenic 50.0%
GTTGAGTGATCAGCTTGGGA+AGG - chr5_1:6399794-6399813 Msa0713920:CDS 50.0%
! TCAGCTTGGGAAGGAGCTTT+TGG - chr5_1:6399803-6399822 Msa0713920:CDS 50.0%
GTTCGCAGATTCCGTATGGA+CGG - chr5_1:6399835-6399854 Msa0713920:CDS 50.0%
GTATGGACGGAAGTCGATGT+TGG - chr5_1:6399848-6399867 Msa0713920:CDS 50.0%
GTCGATGTTGGAGGCTTATG+GGG - chr5_1:6399860-6399879 Msa0713920:CDS 50.0%
GTGCCAGAAGATTCAAGGAG+TGG - chr5_1:6399909-6399928 Msa0713920:CDS 50.0%
!! TGAGGCATCGGGATCTTCAA+GGG + chr5_1:6400648-6400667 None:intergenic 50.0%
!! TTGAGGCATCGGGATCTTCA+AGG + chr5_1:6400649-6400668 None:intergenic 50.0%
AGATCCCGATGCCTCAAAAG+AGG - chr5_1:6400652-6400671 Msa0713920:CDS 50.0%
! GTCTTGGACAGAGCACCTTA+AGG + chr5_1:6400937-6400956 None:intergenic 50.0%
! TAAGGTGCTCTGTCCAAGAC+TGG - chr5_1:6400937-6400956 Msa0713920:intron 50.0%
! AAGGTGCTCTGTCCAAGACT+GGG - chr5_1:6400938-6400957 Msa0713920:intron 50.0%
TGTGTGATTCCTGTAGGTGG+TGG - chr5_1:6401140-6401159 Msa0713920:intron 50.0%
! AGCTACAGGAGGTTGATCAC+TGG + chr5_1:6401193-6401212 None:intergenic 50.0%
! GTTAGCTTCTGAGCTACAGG+AGG + chr5_1:6401204-6401223 None:intergenic 50.0%
TCCCTCAATAGTGCCCATTG+AGG - chr5_1:6401248-6401267 Msa0713920:intron 50.0%
CTCCTCAATGGGCACTATTG+AGG + chr5_1:6401253-6401272 None:intergenic 50.0%
CTCAATAGTGCCCATTGAGG+AGG - chr5_1:6401251-6401270 Msa0713920:intron 50.0%
GCGATTACATGCCTCCTCAA+TGG + chr5_1:6401265-6401284 None:intergenic 50.0%
TGCAAGTATGCCATCTCGGA+AGG - chr5_1:6401330-6401349 Msa0713920:intron 50.0%
TTTAGACGCTCCTTCCGAGA+TGG + chr5_1:6401343-6401362 None:intergenic 50.0%
! ATAGGCAGCCTTATGCAGCA+GGG + chr5_1:6401769-6401788 None:intergenic 50.0%
GTAGCTGTAACACTGTGGGA+TGG + chr5_1:6401822-6401841 None:intergenic 50.0%
TGCTTCAGCATGAGGATACC+AGG - chr5_1:6401964-6401983 Msa0713920:CDS 50.0%
CAACCGTCATTTGCAGAGCA+AGG + chr5_1:6402118-6402137 None:intergenic 50.0%
AGGAGCAAAACACATGGCAG+TGG + chr5_1:6403756-6403775 None:intergenic 50.0%
! GTGATACTGACTGATTCCGG+TGG - chr5_1:6403941-6403960 Msa0713920:CDS 50.0%
!!! GCCTGATGTAGTTTTGGCAC+TGG - chr5_1:6404090-6404109 Msa0713920:CDS 50.0%
CCCAGTGCCAAAACTACATC+AGG + chr5_1:6404094-6404113 None:intergenic 50.0%
!! CACTGCAGAGAGCACAGTTT+TGG + chr5_1:6404215-6404234 None:intergenic 50.0%
GTGCTCTCTGCAGTGAATGA+AGG - chr5_1:6404220-6404239 Msa0713920:CDS 50.0%
AGGGGTTGCTTGAACCTCTT+TGG - chr5_1:6404572-6404591 Msa0713920:CDS 50.0%
!! GGTGGCAGTGGTGTTTTTGC+GGG + chr5_1:6399313-6399332 None:intergenic 55.0%
TGGACGGAAGTCGATGTTGG+AGG - chr5_1:6399851-6399870 Msa0713920:CDS 55.0%
!! AGGCATCGGGATCTTCAAGG+GGG + chr5_1:6400646-6400665 None:intergenic 55.0%
!! GAGGCATCGGGATCTTCAAG+GGG + chr5_1:6400647-6400666 None:intergenic 55.0%
CATCGAGAACCACCACCTAC+AGG + chr5_1:6401152-6401171 None:intergenic 55.0%
! GATAGGCAGCCTTATGCAGC+AGG + chr5_1:6401770-6401789 None:intergenic 55.0%
GGCCCTTGCTCTGCAAATGA+CGG - chr5_1:6402112-6402131 Msa0713920:CDS 55.0%
GCTGGGTACCCAAGTAATGG+AGG - chr5_1:6403113-6403132 Msa0713920:intron 55.0%
TTGTTGCAGCCGCAAAGCCT+TGG - chr5_1:6404065-6404084 Msa0713920:CDS 55.0%
ATCAGGCAGCCAAGGCTTTG+CGG + chr5_1:6404077-6404096 None:intergenic 55.0%
TTTGCGGGAAGAGCGACGGA+GGG + chr5_1:6399298-6399317 None:intergenic 60.0%
! TTTTGCGGGAAGAGCGACGG+AGG + chr5_1:6399299-6399318 None:intergenic 60.0%
!! TTGGGAACTGGGTTCGGTGG+TGG + chr5_1:6399331-6399350 None:intergenic 60.0%
GGATTGGGAACTGGGTTCGG+TGG + chr5_1:6399334-6399353 None:intergenic 60.0%
CGAGCACGTGCTCAACTGCT+TGG - chr5_1:6402935-6402954 Msa0713920:CDS 60.0%
!! ACTGGGTTCGGTGGTGGCAG+TGG + chr5_1:6399325-6399344 None:intergenic 65.0%
GGAAGAGCGACGGAGGGTGG+CGG + chr5_1:6399292-6399311 None:intergenic 70.0%
! GGGTGGCGGTGGGAGGGGTT+TGG + chr5_1:6399278-6399297 None:intergenic 75.0%
! ACGGAGGGTGGCGGTGGGAG+GGG + chr5_1:6399283-6399302 None:intergenic 75.0%
! GACGGAGGGTGGCGGTGGGA+GGG + chr5_1:6399284-6399303 None:intergenic 75.0%
! GAGCGACGGAGGGTGGCGGT+GGG + chr5_1:6399288-6399307 None:intergenic 75.0%
! AGAGCGACGGAGGGTGGCGG+TGG + chr5_1:6399289-6399308 None:intergenic 75.0%
GCGGGAAGAGCGACGGAGGG+TGG + chr5_1:6399295-6399314 None:intergenic 75.0%
!! CGACGGAGGGTGGCGGTGGG+AGG + chr5_1:6399285-6399304 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 6399048 6404648 6399048 ID=Msa0713920;Name=Msa0713920
chr5_1 mRNA 6399048 6404648 6399048 ID=Msa0713920-mRNA-1;Parent=Msa0713920;Name=Msa0713920-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0.5|0.2|1|1|1|5|0|1260
chr5_1 exon 6403590 6404648 6403590 ID=Msa0713920-mRNA-1:exon:2707;Parent=Msa0713920-mRNA-1
chr5_1 exon 6402642 6403106 6402642 ID=Msa0713920-mRNA-1:exon:2706;Parent=Msa0713920-mRNA-1
chr5_1 exon 6401476 6402540 6401476 ID=Msa0713920-mRNA-1:exon:2705;Parent=Msa0713920-mRNA-1
chr5_1 exon 6400562 6400781 6400562 ID=Msa0713920-mRNA-1:exon:2704;Parent=Msa0713920-mRNA-1
chr5_1 exon 6399048 6400021 6399048 ID=Msa0713920-mRNA-1:exon:2703;Parent=Msa0713920-mRNA-1
chr5_1 CDS 6403590 6404648 6403590 ID=Msa0713920-mRNA-1:cds;Parent=Msa0713920-mRNA-1
chr5_1 CDS 6402642 6403106 6402642 ID=Msa0713920-mRNA-1:cds;Parent=Msa0713920-mRNA-1
chr5_1 CDS 6401476 6402540 6401476 ID=Msa0713920-mRNA-1:cds;Parent=Msa0713920-mRNA-1
chr5_1 CDS 6400562 6400781 6400562 ID=Msa0713920-mRNA-1:cds;Parent=Msa0713920-mRNA-1
chr5_1 CDS 6399048 6400021 6399048 ID=Msa0713920-mRNA-1:cds;Parent=Msa0713920-mRNA-1
Gene Sequence

>Msa0713920

ATGGAGAAGAAGCTTCGTTCATCTCTCAATTCTTCACCACAAGAATTCATCTCTTTAGCCACAACCTTAACCCTAAAATCCTCTAAATCCTCTCTCAAAACCCTAATTCATTCAATCAAACCCTCTTCCAATCTCATTTCTTCACTCCCTCCCTCTCTCTACGAATCCATCACCACCACAATTCAATCCTTCCTCAATCTTCTCGAATCGAACAATTCCGAAAATCTCCAAACCCCTCCCACCGCCACCCTCCGTCGCTCTTCCCGCAAAAACACCACTGCCACCACCGAACCCAGTTCCCAATCCGATGAAAAACATAAAATTCTCGAAAAACTTCAAATTCTCGCTCACATTTCGTTCCTATGCGTTTCGCATCCGAGAAAGGTTTTTGATTTTTCTGATTTGCTACCTGGAGTTCAAGCATTGCATGATAATTTGATTGTTTTGGAAGCGGATTCGATTTTGTCTTCGGGGATTGAGACTATATGTGAAGAATGGTGGAAGGAGAATTTACCGGAGCGCGAATCGTTGATTTCTCAGACATTACCTTTTGTTCTATCGAGATCGTTGACATTGAAGAAAAAAGTGGATGTGCATAGGGTTTATATGTTTCGCGAGGCCTTCGCGTTGTTTGACTTCGAAGATGAGAGTATCGAGGATTTGAAACTGTTGTTAAACAGGTGTGTAATTTCGCCTTTATATTTGAAAACAGAAGATGGAAGAAAGTTTCTGGCTTTTTTGTTTGGGTTGAGTGATCAGCTTGGGAAGGAGCTTTTGGCGATGATTCGTTCGCAGATTCCGTATGGACGGAAGTCGATGTTGGAGGCTTATGGGGATATATTGTTTCGAGCATGGAAAGCTGTGCCAGAAGATTCAAGGAGTGGAATTGAGAATGGGTTCTTGCAGGATTTGATTGAGGGTTCTATCCATGCAAGTTCTGGAACTTTTGCTTTGTATATTAGAAGGGTTTTGGGAGGGTTTATTAATCAGAGGACCGTTGATGGGGTTGAGAAACTACTCTATCGACTTGCCGAGCCAGTCATATTTCGGTCTCTGCAGGCTGCAAACTCAAATGTTCGACAGAATGCTTTGCATCTGCTTTTGGACATATTCCCCCTTGAAGATCCCGATGCCTCAAAAGAGGATAAGGATACATTGCTTGATAAGCAGTTCTTTTTGTTAGAAAAGTTGCTTGTTGACGATTGTCCAGAAGTTAGAACAATTGCTGTTGAGGGTTCTTGTCGTGTCCTTCATCTATTTTGGGAAATTATTCCGTCACCAATTATAACAAAGATGCTTACAAAAGTAATTAGTGACATGTCTCATGATGTATGCAACGAGGTAAGGCTTTCTACGTTGAATGGCATCATTTATTTGCTTGACAATCCCCACTCTCATGAAGTCCTTAAGGTGCTCTGTCCAAGACTGGGTCACTTAATGCTGGATAATGTCCTCACAGTACAAGTTGCTATGGCAGAGCTCTTGCTCCATCTAAATGATATTCAAAATTTTCAGTTTAACAAGGTGGTGGTTCTCGATGTGCTTTTGTCTGTGCTTGCCAGTGATCAACCTCCTGTAGCTCAGAAGCTAACAAAACTGCTTATACCTTCGTACTTTCCCTCAATAGTGCCCATTGAGGAGGCATGTAATCGCTGCATTACACTAGTAAAAAGGTCTCCAATGGCCGGTGCAATATTTTGCAAGTATGCCATCTCGGAAGGAGCGTCTAAAACTCATCTTATGGAACTGGTCAAAGCATTCCTGAGTTTGGTTTTGTCACAAGATAAGCTGAATGCAGATCAGATAGAGGGCTTTCTTATTGCTGCTAGCTATCTTTGTGATAACTTAGTCAGTGAACCATGCTATATGGATGCCCTCAAAGAGTTACTTACTGCAGAGAAAGTGGAAGGTTTACTAACTGGGGCATCTACAGAACAAGCTCAATCATCTTTATTCAACATTTTCTCCACTGTTTGTCCAGATAATGTGGCAGGACTTCTTGAAGAGTGCATGAGTGTTGTCACAAACTGCCATGGTTTACCTGAAGATGTTGATCGCCAATCTAAAATTAGGTCTGCACATAAGTTGTTGCTTTCTTTGGGAGGTTTTGATGACATGTTTGAAGCCTTAACAACCCTGCTGCATAAGGCTGCCTATCGTTGTCACATTAAATTTGGGGCAGACATGCCATCCCACAGTGTTACAGCTACTAAAAGGAAAAAATCTAAATCCTCTGGAAAATTTTCAATTAAATCGAAGATAATTAACAGAAAGCAATCTTTTGAAGATGATTATTTAGTAGCTGTAGGAGTTGCATGGCAAGTTAGAGACTTGCTTCAGCATGAGGATACCAGGAAAGCAATCTTTAGATCTCAACCTTTAGAAATGTTGTTTTTTTCGCTTAAGATGGTATCTGAAGTCAGCATTGAGCATTGTGGGCAGTATGAATACATAGACATATCTCCTGTTTTGGCATATATGGCCCTTGCTCTGCAAATGACGGTTGATAATGTTGGCACAAGTAGTGAAAAGAATGGTGATTCCAAGGGGAAGAAAACTAAGATTGATTCTTCTACATTACTTTCAGAGACTGTATTGGATCTGACAATCGAGCACGTGCTCAACTGCTTGGAAAAACTATTTGGATCAGATGACACTGTACAATATCACAATGTGGATTCACATAACTTGGAGTCAACAACTGGGAAAAATCGAAGTTCCAAAAAAAGGAAGAAAACAGGGAAAAATCAAAATTCCACAAAAAGGCGAAGGCTATCTCTGACAAATGCTGGGTACCCAAGTAATGGAGGATCTGTACACAATGAACCTCAACAAGTGCTTTGTAAGGTGAAGATGATTACTGCTGTTCTGAAGTTCATGGCTGATGCCACTGCCATGTGTTTTGCTCCTCACAACAATGGATTATTCTTGAATAATACCTCAAAATGCATACAACATATCTTGTCTTCATTGAACCAGCTGTATCATCACAGAATTGAATTTGAGGAAGAGGATAAAAAAAATACTATATTTTGCCTGAAAAGCTCTTTCAGCTATGCTGCAAAAATACTCAATGTGATACTGACTGATTCCGGTGGATCCTCCATAATGACATCAAAAGCCTTCACTCTTGCCAATAACTTGCTTGATTTAATTGTTTCAACTGAATCATGTTTGGGCTCTGCATATGCATCACGTCTTGTTGCAGCCGCAAAGCCTTGGCTGCCTGATGTAGTTTTGGCACTGGGATCTGAAAGTGTTCTACAACACACCGAAAGTGGAAGTGAACATTTAACTGCTTCTGAACAAATGAAGTTACAATTTCCAAAATGGCCCTTGATTGTAGCCAAAACTGTGCTCTCTGCAGTGAATGAAGGTGAAGGAGAGGGTGAATGCTCTCAACCAGATAAATTCTCGACATTCAATAAACTTACGGCTATGCTGGTTATATTACTTAAAAAGAATAAGAGTATAATGGATGCAGTTGGGGATATTTTCTTGGTTTGTTCACTTGTTGGGCTAGAACAAAAGGACTTTGAGCTGGCATTAGGACTCTTGCAGTTTGTATGTTCCAAGTTGTTTAATCGTGATGACAGGGATTGGGGTGACATGATGTTATCTTCTCTGGAAGAAATCTATCATAAGATAGAGAGGCAAATTACAGAAGCTAGTAATAACGATGAACTGGAGAAATTGATGCATGTAAAGGGGTTGCTTGAACCTCTTTGGACGTATCATCTATATGAAACTGGAAAGGTCAACATGACTGATGACTATAATTAG

Protein sequence

>Msa0713920

MEKKLRSSLNSSPQEFISLATTLTLKSSKSSLKTLIHSIKPSSNLISSLPPSLYESITTTIQSFLNLLESNNSENLQTPPTATLRRSSRKNTTATTEPSSQSDEKHKILEKLQILAHISFLCVSHPRKVFDFSDLLPGVQALHDNLIVLEADSILSSGIETICEEWWKENLPERESLISQTLPFVLSRSLTLKKKVDVHRVYMFREAFALFDFEDESIEDLKLLLNRCVISPLYLKTEDGRKFLAFLFGLSDQLGKELLAMIRSQIPYGRKSMLEAYGDILFRAWKAVPEDSRSGIENGFLQDLIEGSIHASSGTFALYIRRVLGGFINQRTVDGVEKLLYRLAEPVIFRSLQAANSNVRQNALHLLLDIFPLEDPDASKEDKDTLLDKQFFLLEKLLVDDCPEVRTIAVEGSCRVLHLFWEIIPSPIITKMLTKVISDMSHDVCNEVRLSTLNGIIYLLDNPHSHEVLKVLCPRLGHLMLDNVLTVQVAMAELLLHLNDIQNFQFNKVVVLDVLLSVLASDQPPVAQKLTKLLIPSYFPSIVPIEEACNRCITLVKRSPMAGAIFCKYAISEGASKTHLMELVKAFLSLVLSQDKLNADQIEGFLIAASYLCDNLVSEPCYMDALKELLTAEKVEGLLTGASTEQAQSSLFNIFSTVCPDNVAGLLEECMSVVTNCHGLPEDVDRQSKIRSAHKLLLSLGGFDDMFEALTTLLHKAAYRCHIKFGADMPSHSVTATKRKKSKSSGKFSIKSKIINRKQSFEDDYLVAVGVAWQVRDLLQHEDTRKAIFRSQPLEMLFFSLKMVSEVSIEHCGQYEYIDISPVLAYMALALQMTVDNVGTSSEKNGDSKGKKTKIDSSTLLSETVLDLTIEHVLNCLEKLFGSDDTVQYHNVDSHNLESTTGKNRSSKKRKKTGKNQNSTKRRRLSLTNAGYPSNGGSVHNEPQQVLCKVKMITAVLKFMADATAMCFAPHNNGLFLNNTSKCIQHILSSLNQLYHHRIEFEEEDKKNTIFCLKSSFSYAAKILNVILTDSGGSSIMTSKAFTLANNLLDLIVSTESCLGSAYASRLVAAAKPWLPDVVLALGSESVLQHTESGSEHLTASEQMKLQFPKWPLIVAKTVLSAVNEGEGEGECSQPDKFSTFNKLTAMLVILLKKNKSIMDAVGDIFLVCSLVGLEQKDFELALGLLQFVCSKLFNRDDRDWGDMMLSSLEEIYHKIERQITEASNNDELEKLMHVKGLLEPLWTYHLYETGKVNMTDDYN*