AlfalfaGEDB | Msa0186360

M. sativa cultivar zhongmu-4 / Msa0186360

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0186360	XP_013462271.1	97.748	222	5	0	1	222	1	222	6.58e-156	441

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0186360	I3SCR3	97.748	222	5	0	1	222	1	222	3.14e-156	441

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005020	Msa0186360	0.837172	6.078592e-57	-8.615850e-47
Msa0006840	Msa0186360	0.827387	1.608908e-54	-8.615850e-47
Msa0015570	Msa0186360	0.810028	1.412859e-50	-8.615850e-47
Msa0016530	Msa0186360	0.840804	6.972402e-58	-8.615850e-47
Msa0018920	Msa0186360	0.832829	7.562551e-56	-8.615850e-47
Msa0019930	Msa0186360	0.803427	3.505152e-49	-8.615850e-47
Msa0020540	Msa0186360	0.824127	9.549697e-54	-8.615850e-47
Msa0027800	Msa0186360	0.849522	3.063366e-60	-8.615850e-47
Msa0030070	Msa0186360	0.869966	2.083032e-66	-8.615850e-47
Msa0030690	Msa0186360	0.810836	9.455676e-51	-8.615850e-47

Showing 1 to 10 of 325 entries

Previous1 2 3 4 5…33Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0186360	MtrunA17_Chr3g0143871	97.748	222	5	0	1	222	1	222	6.05e-160	441

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0186360	AT5G42330.1	47.208	197	83	10	6	194	2	185	5.02e-37	129

Showing 1 to 1 of 1 entries

Previous1Next

Find 68 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTATCAATTTCCATT+CGG	0.511455	2_1:+1071848	None:intergenic
AAATCCACAACATCAGCCGT+TGG	0.577335	2_1:-1072853	Msa0186360:five_prime_UTR
AAGAATACTGCAAGAAAACT+TGG	0.439698	2_1:-1072147	Msa0186360:CDS
AAGAGAGGGAGAGTCAAGAA+CGG	0.623596	2_1:+1072625	None:intergenic
AATAAGAAACCTCCTCTAGC+TGG	0.510440	2_1:-1072039	Msa0186360:CDS
AATAATCATCATAATGTTCT+TGG	0.387259	2_1:-1072192	Msa0186360:CDS
AATCTTGAACCAGCTAGAGG+AGG	0.634666	2_1:+1072030	None:intergenic
AATTCTTGTAACCCTAAATC+TGG	0.396987	2_1:-1072339	Msa0186360:CDS
ACCTGGTGGAGTTTGAAGAG+AGG	0.555239	2_1:+1072610	None:intergenic
ACTGTTGGTGAGAAGAAAGT+TGG	0.529021	2_1:-1071994	Msa0186360:CDS

Showing 1 to 10 of 68 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATGTTGTGGATTTCAAAAAG+TGG	+	chr2_1:1071843-1071862	None:intergenic	30.0%
ATAAGATTATAAGAACCTGG+TGG	+	chr2_1:1072110-1072129	None:intergenic	30.0%
CCACAAACAAAAAATGTCAA+TGG	+	chr2_1:1072183-1072202	None:intergenic	30.0%
GTGGATTTGAAAATTGAAAC+AGG	-	chr2_1:1072199-1072218	Msa0186360:CDS	30.0%
TAAATTCAGAAGCAATTGTG+CGG	+	chr2_1:1072279-1072298	None:intergenic	30.0%
CACAATTGCTTCTGAATTTA+GGG	-	chr2_1:1072279-1072298	Msa0186360:CDS	30.0%
TTGGTACCATTAATTTCTTC+CGG	+	chr2_1:1072346-1072365	None:intergenic	30.0%
AATTCTTGTAACCCTAAATC+TGG	-	chr2_1:1072364-1072383	Msa0186360:CDS	30.0%
ATGATGAGTATTCTGCAAAA+AGG	-	chr2_1:1072413-1072432	Msa0186360:CDS	30.0%
AAGAATACTGCAAGAAAACT+TGG	-	chr2_1:1072556-1072575	Msa0186360:intron	30.0%

Showing 1 to 10 of 156 entries

Previous1 2 3 4 5…16Next

Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	1071825	1072900	1071825	ID=Msa0186360;Name=Msa0186360
chr2_1	mRNA	1071825	1072900	1071825	ID=Msa0186360-mRNA-1;Parent=Msa0186360;Name=Msa0186360-mRNA-1;_AED=0.01;_eAED=0.01;_QI=168\|1\|1\|1\|1\|1\|2\|132\|222
chr2_1	exon	1071825	1072504	1071825	ID=Msa0186360-mRNA-1:exon:438;Parent=Msa0186360-mRNA-1
chr2_1	exon	1072612	1072900	1072612	ID=Msa0186360-mRNA-1:exon:437;Parent=Msa0186360-mRNA-1
chr2_1	five_prime_UTR	1072733	1072900	1072733	ID=Msa0186360-mRNA-1:five_prime_utr;Parent=Msa0186360-mRNA-1
chr2_1	CDS	1072612	1072732	1072612	ID=Msa0186360-mRNA-1:cds;Parent=Msa0186360-mRNA-1
chr2_1	CDS	1071957	1072504	1071957	ID=Msa0186360-mRNA-1:cds;Parent=Msa0186360-mRNA-1
chr2_1	three_prime_UTR	1071825	1071956	1071825	ID=Msa0186360-mRNA-1:three_prime_utr;Parent=Msa0186360-mRNA-1

Gene Sequence

>Msa0186360

ATGTACTATTCATCATCAACCATGAAATCCCACCTCCGACCACCGCGACCGATCCCTAAGTCTCCGATGCGTCTTCGAACTCGAACCGTTCTTGACTCTCCCTCTCTTCAAACTCCACCAGGTTCTTTAACCAAGTCTCGGAAACTGGTTCAATCTCCTGAACTACGACCTGAATACCGCACAATTGCTTCTGAATTTAGGGCTTTATCAAGGATGGTTCGTGACGAATTTGGAAAACCAGATCCGGAAGAAATTAATGGTACCAATTCTTGTAACCCTAAATCTGGTGTTCTGTTTCAGAGAGGAAGATTCTATGATGAGTATTCTGCAAAAAGGAACGAGAGGTTGAAGAGAAAGAAAGGAGTCACGGTGGATGAAGTTAATACTACTAGTATTAAGCAAACTAAGGTGAATAATCATCATAATGTTCTTGGTGTTACTGTTGAATCTGGAAAAAAGAATACTGCAAGAAAACTTGGAAGTTTGAGAAAATCTGTTTCTGCTGCTTATTCTGCTGAGGTTAGTGAAACTCCAAGGTACATGCTTAGAAGCATGACTAAGGAGAATAAGAAACCTCCTCTAGCTGGTTCAAGATTTGATAAATCTGTTACTGTTGGTGAGAAGAAAGTTGGAGCATCGAGAAGAGTAGGAAAAATTTCGTACTATTAG

Protein sequence

>Msa0186360

MYYSSSTMKSHLRPPRPIPKSPMRLRTRTVLDSPSLQTPPGSLTKSRKLVQSPELRPEYRTIASEFRALSRMVRDEFGKPDPEEINGTNSCNPKSGVLFQRGRFYDEYSAKRNERLKRKKGVTVDEVNTTSIKQTKVNNHHNVLGVTVESGKKNTARKLGSLRKSVSAAYSAEVSETPRYMLRSMTKENKKPPLAGSRFDKSVTVGEKKVGASRRVGKISYY*