AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1254420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1254420 MtrunA17_Chr8g0371981 97.368 342 9 0 1 342 1 342 0.0 672
Msa1254420 MtrunA17_Chr5g0405401 52.212 339 92 16 12 338 3 283 9.05e-76 234
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1254420 AT5G66230.1 48.295 352 144 12 1 337 1 329 1.22e-78 244
Msa1254420 AT5G66230.2 47.550 347 145 11 6 337 221 545 1.71e-74 239
Msa1254420 AT3G51230.1 46.860 207 89 8 1 202 1 191 3.36e-43 148

Find 97 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTAATTGACAAGATTCT+TGG 0.223838 8_2:+52535180 Msa1254420:three_prime_UTR
GGGATTTGAGGGGTGTTTGC+AGG 0.236776 8_2:-52534203 None:intergenic
AAACGAATATGCTTTCCTTT+TGG 0.268585 8_2:-52534981 None:intergenic
TGATTAGCAATTCTAAATAA+TGG 0.281968 8_2:+52535222 Msa1254420:three_prime_UTR
GAGGGGTGTTTGCAGGAGTT+GGG 0.290208 8_2:-52534196 None:intergenic
AATTTCTAAAATGCAACTTT+TGG 0.321476 8_2:+52535275 Msa1254420:three_prime_UTR
TGAGGGGTGTTTGCAGGAGT+TGG 0.326042 8_2:-52534197 None:intergenic
CTTCTTCAACTTTCTGCAAA+AGG 0.331507 8_2:-52534097 None:intergenic
TGTGAACATTGGGGATTTGA+GGG 0.376309 8_2:-52534214 None:intergenic
ATTGCTAATCATAAACTTGC+TGG 0.379517 8_2:-52535210 None:intergenic
AATGTGGTTCCAAAGTTTGC+TGG 0.401675 8_2:+52534846 Msa1254420:CDS
TCCTAGCACTAACTCCATTC+AGG 0.401932 8_2:-52535110 None:intergenic
GAGCATTCAACCACATGTTA+TGG 0.410811 8_2:-52535133 None:intergenic
AATGAAAGAAACAATATCAT+TGG 0.420968 8_2:-52535155 None:intergenic
GTATGTTTCCCAGCAAACTT+TGG 0.422670 8_2:-52534855 None:intergenic
GGCATAATCATAAGGTAGAT+TGG 0.423121 8_2:+52535243 Msa1254420:three_prime_UTR
AAAGGGACAAGCACAACAAC+AGG 0.423276 8_2:+52533914 Msa1254420:CDS
GTGAAGAAGACTCCAGGTTC+CGG 0.425217 8_2:+52534044 Msa1254420:CDS
TTCGAAATCAAGACAAAGAA+AGG 0.427601 8_2:+52533896 Msa1254420:CDS
TTCCGGTGAGGCTTTGTTGA+GGG 0.429244 8_2:+52534061 Msa1254420:CDS
GCCAACGATGGGAGAATCAT+TGG 0.432716 8_2:-52533961 None:intergenic
AAGAATTACTCACTTGAAGA+TGG 0.434934 8_2:-52533626 None:intergenic
TTGTGAACATTGGGGATTTG+AGG 0.435272 8_2:-52534215 None:intergenic
TTCAGGGAAGATCGAAGATT+CGG 0.443167 8_2:+52533863 Msa1254420:intron
AAGATGATGGTGATTCCATT+TGG 0.444967 8_2:+52534640 Msa1254420:CDS
AACAAAGCCTCACCGGAACC+TGG 0.449282 8_2:-52534056 None:intergenic
TTCTTCAACTTTCTGCAAAA+GGG 0.455347 8_2:-52534096 None:intergenic
AGGGGTGTTTGCAGGAGTTG+GGG 0.457618 8_2:-52534195 None:intergenic
TGAGGAGGATGATTACTATG+AGG 0.469908 8_2:+52534734 Msa1254420:CDS
GTGGCAGTGTTGTGAACATT+GGG 0.470455 8_2:-52534224 None:intergenic
TGAGGTAGAAGAAGATGAGG+AGG 0.471514 8_2:+52534719 Msa1254420:CDS
TAAATAATGGCATAATCATA+AGG 0.474806 8_2:+52535235 Msa1254420:three_prime_UTR
AGCTGAGGTAGAAGAAGATG+AGG 0.475342 8_2:+52534716 Msa1254420:CDS
AATGTTCACAACACTGCCAC+TGG 0.475348 8_2:+52534227 Msa1254420:CDS
GTCGAGTATTGCGAAGCAAA+GGG 0.479477 8_2:+52534013 Msa1254420:CDS
TCAAGAACAACTCATTCCTC+AGG 0.485642 8_2:+52534280 Msa1254420:CDS
CTTTCAATCACTTTCAACAA+TGG 0.487904 8_2:+52533526 Msa1254420:exon
GAGTTAACAAATTGAAGAAA+AGG 0.490460 8_2:-52534155 None:intergenic
TTGCGAAGCAAAGGGGAAGC+CGG 0.490483 8_2:+52534021 Msa1254420:CDS
AAGGGGTTGCCAACTCCAAA+AGG 0.491437 8_2:+52534966 Msa1254420:CDS
CCCATCGTTGGCCTTGCGAA+TGG 0.492124 8_2:+52533972 Msa1254420:CDS
GAAGAAGAAGAGTATGCTGA+TGG 0.492765 8_2:+52534765 Msa1254420:CDS
TGTTCTTGAACAACAGAAGA+AGG 0.497351 8_2:-52534266 None:intergenic
TGAAGATGAGATTGTGGAAG+AGG 0.502605 8_2:+52534899 Msa1254420:CDS
GAGGAGGATGATTACTATGA+GGG 0.504175 8_2:+52534735 Msa1254420:CDS
GAAGAAGAGTATGCTGATGG+AGG 0.507800 8_2:+52534768 Msa1254420:CDS
TGCGAAGCAAAGGGGAAGCC+GGG 0.508660 8_2:+52534022 Msa1254420:CDS
ACCCCTCAACAAAGCCTCAC+CGG 0.509993 8_2:-52534063 None:intergenic
TCCGGTGAGGCTTTGTTGAG+GGG 0.514281 8_2:+52534062 Msa1254420:CDS
AGATGGGATGTTGTTGCCGC+TGG 0.517377 8_2:-52533609 None:intergenic
ATGTGGTTCCAAAGTTTGCT+GGG 0.519914 8_2:+52534847 Msa1254420:CDS
GTTGGGGCAAGAAGTTGCAT+TGG 0.524680 8_2:-52534179 None:intergenic
GTGAACATTGGGGATTTGAG+GGG 0.528548 8_2:-52534213 None:intergenic
ATTGACTTGAATTGACCAAA+TGG 0.542604 8_2:-52534655 None:intergenic
GCCATTCGCAAGGCCAACGA+TGG 0.543905 8_2:-52533973 None:intergenic
AAGAAGAGTATGCTGATGGA+GGG 0.550657 8_2:+52534769 Msa1254420:CDS
GTTACAGAAGACTCTAAGAT+GGG 0.553091 8_2:+52534609 Msa1254420:CDS
ACCTGAATGGAGTTAGTGCT+AGG 0.554185 8_2:+52535109 Msa1254420:three_prime_UTR
TCCAATGATTCTCCCATCGT+TGG 0.556712 8_2:+52533960 Msa1254420:CDS
GGTTACAGAAGACTCTAAGA+TGG 0.557417 8_2:+52534608 Msa1254420:CDS
AGCCGGGTGAAGAAGACTCC+AGG 0.558034 8_2:+52534038 Msa1254420:CDS
TGTCGAGTATTGCGAAGCAA+AGG 0.560390 8_2:+52534012 Msa1254420:CDS
GTTCCGGTGAGGCTTTGTTG+AGG 0.560999 8_2:+52534060 Msa1254420:CDS
AGCAACATAGGTGTGAATGA+AGG 0.563852 8_2:+52534822 Msa1254420:CDS
TCTTGTGACTCTTCTTGCGG+TGG 0.565083 8_2:-52533561 None:intergenic
AGAATTACTCACTTGAAGAT+GGG 0.571889 8_2:-52533625 None:intergenic
TCTCGATCTCGCCATTCGCA+AGG 0.575081 8_2:-52533983 None:intergenic
TGATCTTGTGACTCTTCTTG+CGG 0.576495 8_2:-52533564 None:intergenic
AGATTTCTCTGACAAATCTG+AGG 0.585613 8_2:+52534587 Msa1254420:CDS
TTACTTGATGAACTGTGTGA+GGG 0.586074 8_2:+52534795 Msa1254420:CDS
TCGAAATCAAGACAAAGAAA+GGG 0.587811 8_2:+52533897 Msa1254420:CDS
CCATTCGCAAGGCCAACGAT+GGG 0.588894 8_2:-52533972 None:intergenic
TGAGATTTCTAAACTGACAA+TGG 0.589958 8_2:+52534124 Msa1254420:CDS
AACCTGGAGTCTTCTTCACC+CGG 0.596279 8_2:-52534040 None:intergenic
ATGGGGTCCACAGAAGATGA+TGG 0.602409 8_2:+52534627 Msa1254420:CDS
AGTGGCAGTGTTGTGAACAT+TGG 0.604135 8_2:-52534225 None:intergenic
GTTACTTGATGAACTGTGTG+AGG 0.604205 8_2:+52534794 Msa1254420:CDS
GGAATCACCATCATCTTCTG+TGG 0.604946 8_2:-52534634 None:intergenic
TAGTGATGAAGATGAGATTG+TGG 0.608219 8_2:+52534893 Msa1254420:CDS
GACAAGCACAACAACAGGAT+CGG 0.611365 8_2:+52533919 Msa1254420:CDS
GTTGCCGCTGGAAGCAGTCA+AGG 0.612445 8_2:-52533597 None:intergenic
TGTGAGGGTTTGAGCAACAT+AGG 0.619396 8_2:+52534810 Msa1254420:CDS
AACAGAAGAAGGTGAAAACT+CGG 0.623438 8_2:-52534255 None:intergenic
TCAGAGAAATCTAACAGCAG+TGG 0.624435 8_2:-52534576 None:intergenic
AGATGATGAGGAAATAGCTG+AGG 0.641873 8_2:+52534701 Msa1254420:CDS
TGATGATGATGAAGATGATG+AGG 0.651668 8_2:+52534689 Msa1254420:CDS
TGAAAACTCGGTGAAACCAG+TGG 0.662057 8_2:-52534243 None:intergenic
AGGTGTGAATGAAGGAAATG+TGG 0.670580 8_2:+52534830 Msa1254420:CDS
TGCTTCGCAATACTCGACAG+AGG 0.689458 8_2:-52534008 None:intergenic
TCGAGTATTGCGAAGCAAAG+GGG 0.696553 8_2:+52534014 Msa1254420:CDS
ACCACCTTGACTGCTTCCAG+CGG 0.704099 8_2:+52533593 Msa1254420:CDS
TTACAGAAGACTCTAAGATG+GGG 0.707522 8_2:+52534610 Msa1254420:CDS
AGTGCTAGGACCATAACATG+TGG 0.714546 8_2:+52535123 Msa1254420:three_prime_UTR
GAAGACTCCAGGTTCCGGTG+AGG 0.720344 8_2:+52534049 Msa1254420:CDS
TGGCAGTGTTGTGAACATTG+GGG 0.729813 8_2:-52534223 None:intergenic
AGGAACATGACTCTGATGAG+TGG 0.738895 8_2:-52535307 None:intergenic
GCCGCTGGAAGCAGTCAAGG+TGG 0.743393 8_2:-52533594 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATTCAATTTTTGAAAA+TGG + chr8_2:52533746-52533765 Msa1254420:intron 10.0%
!!! AAAATTCAATTTTTGAAAAT+GGG + chr8_2:52533747-52533766 Msa1254420:intron 10.0%
!!! AAAAATTCAATTTTTGAAAA+TGG + chr8_2:52533746-52533765 Msa1254420:intron 10.0%
!!! AAAATTCAATTTTTGAAAAT+GGG + chr8_2:52533747-52533766 Msa1254420:intron 10.0%
!!! AATATTTTCTTGAAAAACTA+AGG - chr8_2:52534479-52534498 None:intergenic 15.0%
!!! AATATTTTCTTGAAAAACTA+AGG - chr8_2:52534479-52534498 None:intergenic 15.0%
!!! TAGTTTGTTAAACATGTATT+TGG + chr8_2:52534452-52534471 Msa1254420:intron 20.0%
!! AATGAAAGAAACAATATCAT+TGG - chr8_2:52535158-52535177 None:intergenic 20.0%
!! TGATTAGCAATTCTAAATAA+TGG + chr8_2:52535222-52535241 Msa1254420:three_prime_UTR 20.0%
!! TAAATAATGGCATAATCATA+AGG + chr8_2:52535235-52535254 Msa1254420:three_prime_UTR 20.0%
!!! AATTTCTAAAATGCAACTTT+TGG + chr8_2:52535275-52535294 Msa1254420:three_prime_UTR 20.0%
!!! TAGTTTGTTAAACATGTATT+TGG + chr8_2:52534452-52534471 Msa1254420:intron 20.0%
!! AATGAAAGAAACAATATCAT+TGG - chr8_2:52535158-52535177 None:intergenic 20.0%
!! TGATTAGCAATTCTAAATAA+TGG + chr8_2:52535222-52535241 Msa1254420:three_prime_UTR 20.0%
!! TAAATAATGGCATAATCATA+AGG + chr8_2:52535235-52535254 Msa1254420:three_prime_UTR 20.0%
!!! AATTTCTAAAATGCAACTTT+TGG + chr8_2:52535275-52535294 Msa1254420:three_prime_UTR 20.0%
!!! AAAAATTCGATTTTTCGAAC+TGG + chr8_2:52533653-52533672 Msa1254420:intron 25.0%
!!! AAAATTCGATTTTTCGAACT+GGG + chr8_2:52533654-52533673 Msa1254420:intron 25.0%
!!! TTGATCATTTTCAAGTTTGA+TGG + chr8_2:52533679-52533698 Msa1254420:intron 25.0%
!! CTTTATCAAAGATTCGATTT+TGG + chr8_2:52533800-52533819 Msa1254420:intron 25.0%
!!! AAAGATTCGATTTTGGAAAA+TGG + chr8_2:52533807-52533826 Msa1254420:intron 25.0%
!!! AAGATTCGATTTTGGAAAAT+GGG + chr8_2:52533808-52533827 Msa1254420:intron 25.0%
! GAGTTAACAAATTGAAGAAA+AGG - chr8_2:52534158-52534177 None:intergenic 25.0%
! ATGCACTTTCTTGAAAAATA+AGG - chr8_2:52534408-52534427 None:intergenic 25.0%
!!! TTGATTTGATTTTTGATGTC+AGG + chr8_2:52534509-52534528 Msa1254420:intron 25.0%
!!! TTGTTTTTGCTTAGTTTTGT+TGG + chr8_2:52535043-52535062 Msa1254420:three_prime_UTR 25.0%
!!! TTTGTTTCTTTTTACCTGAA+TGG + chr8_2:52535096-52535115 Msa1254420:three_prime_UTR 25.0%
!!! AAAAATTCGATTTTTCGAAC+TGG + chr8_2:52533653-52533672 Msa1254420:intron 25.0%
!!! AAAATTCGATTTTTCGAACT+GGG + chr8_2:52533654-52533673 Msa1254420:intron 25.0%
!!! TTGATCATTTTCAAGTTTGA+TGG + chr8_2:52533679-52533698 Msa1254420:intron 25.0%
!! CTTTATCAAAGATTCGATTT+TGG + chr8_2:52533800-52533819 Msa1254420:intron 25.0%
!!! AAAGATTCGATTTTGGAAAA+TGG + chr8_2:52533807-52533826 Msa1254420:intron 25.0%
!!! AAGATTCGATTTTGGAAAAT+GGG + chr8_2:52533808-52533827 Msa1254420:intron 25.0%
! GAGTTAACAAATTGAAGAAA+AGG - chr8_2:52534158-52534177 None:intergenic 25.0%
! ATGCACTTTCTTGAAAAATA+AGG - chr8_2:52534408-52534427 None:intergenic 25.0%
!!! TTGATTTGATTTTTGATGTC+AGG + chr8_2:52534509-52534528 Msa1254420:intron 25.0%
!!! TTGTTTTTGCTTAGTTTTGT+TGG + chr8_2:52535043-52535062 Msa1254420:three_prime_UTR 25.0%
!!! TTTGTTTCTTTTTACCTGAA+TGG + chr8_2:52535096-52535115 Msa1254420:three_prime_UTR 25.0%
CTTTCAATCACTTTCAACAA+TGG + chr8_2:52533526-52533545 Msa1254420:exon 30.0%
AGAATTACTCACTTGAAGAT+GGG - chr8_2:52533628-52533647 None:intergenic 30.0%
AAGAATTACTCACTTGAAGA+TGG - chr8_2:52533629-52533648 None:intergenic 30.0%
! TCTCATGATTTTCTTGATTC+AGG + chr8_2:52533846-52533865 Msa1254420:intron 30.0%
! CTCATGATTTTCTTGATTCA+GGG + chr8_2:52533847-52533866 Msa1254420:intron 30.0%
TTCGAAATCAAGACAAAGAA+AGG + chr8_2:52533896-52533915 Msa1254420:CDS 30.0%
TCGAAATCAAGACAAAGAAA+GGG + chr8_2:52533897-52533916 Msa1254420:CDS 30.0%
TTCTTCAACTTTCTGCAAAA+GGG - chr8_2:52534099-52534118 None:intergenic 30.0%
TGAGATTTCTAAACTGACAA+TGG + chr8_2:52534124-52534143 Msa1254420:CDS 30.0%
!!! CAAGAAAGTGCATGTTTTTT+TGG + chr8_2:52534415-52534434 Msa1254420:intron 30.0%
!! ATTGACTTGAATTGACCAAA+TGG - chr8_2:52534658-52534677 None:intergenic 30.0%
!! TCTGAGATTTTGCATTTGAA+GGG + chr8_2:52534948-52534967 Msa1254420:CDS 30.0%
! AAACGAATATGCTTTCCTTT+TGG - chr8_2:52534984-52535003 None:intergenic 30.0%
!! AAAGCATATTCGTTTTTCTG+AGG + chr8_2:52534989-52535008 Msa1254420:CDS 30.0%
AAGAAACAAAAGCCAAAAAG+TGG - chr8_2:52535086-52535105 None:intergenic 30.0%
TGCTTAATTGACAAGATTCT+TGG + chr8_2:52535180-52535199 Msa1254420:three_prime_UTR 30.0%
ATTGCTAATCATAAACTTGC+TGG - chr8_2:52535213-52535232 None:intergenic 30.0%
CTTTCAATCACTTTCAACAA+TGG + chr8_2:52533526-52533545 Msa1254420:exon 30.0%
AGAATTACTCACTTGAAGAT+GGG - chr8_2:52533628-52533647 None:intergenic 30.0%
AAGAATTACTCACTTGAAGA+TGG - chr8_2:52533629-52533648 None:intergenic 30.0%
! TCTCATGATTTTCTTGATTC+AGG + chr8_2:52533846-52533865 Msa1254420:intron 30.0%
! CTCATGATTTTCTTGATTCA+GGG + chr8_2:52533847-52533866 Msa1254420:intron 30.0%
TTCGAAATCAAGACAAAGAA+AGG + chr8_2:52533896-52533915 Msa1254420:CDS 30.0%
TCGAAATCAAGACAAAGAAA+GGG + chr8_2:52533897-52533916 Msa1254420:CDS 30.0%
TTCTTCAACTTTCTGCAAAA+GGG - chr8_2:52534099-52534118 None:intergenic 30.0%
TGAGATTTCTAAACTGACAA+TGG + chr8_2:52534124-52534143 Msa1254420:CDS 30.0%
!!! CAAGAAAGTGCATGTTTTTT+TGG + chr8_2:52534415-52534434 Msa1254420:intron 30.0%
!! ATTGACTTGAATTGACCAAA+TGG - chr8_2:52534658-52534677 None:intergenic 30.0%
!! TCTGAGATTTTGCATTTGAA+GGG + chr8_2:52534948-52534967 Msa1254420:CDS 30.0%
! AAACGAATATGCTTTCCTTT+TGG - chr8_2:52534984-52535003 None:intergenic 30.0%
!! AAAGCATATTCGTTTTTCTG+AGG + chr8_2:52534989-52535008 Msa1254420:CDS 30.0%
AAGAAACAAAAGCCAAAAAG+TGG - chr8_2:52535086-52535105 None:intergenic 30.0%
TGCTTAATTGACAAGATTCT+TGG + chr8_2:52535180-52535199 Msa1254420:three_prime_UTR 30.0%
ATTGCTAATCATAAACTTGC+TGG - chr8_2:52535213-52535232 None:intergenic 30.0%
CTTCTTCAACTTTCTGCAAA+AGG - chr8_2:52534100-52534119 None:intergenic 35.0%
AACAGAAGAAGGTGAAAACT+CGG - chr8_2:52534258-52534277 None:intergenic 35.0%
TGTTCTTGAACAACAGAAGA+AGG - chr8_2:52534269-52534288 None:intergenic 35.0%
AGATTTCTCTGACAAATCTG+AGG + chr8_2:52534587-52534606 Msa1254420:CDS 35.0%
!! GTTACAGAAGACTCTAAGAT+GGG + chr8_2:52534609-52534628 Msa1254420:CDS 35.0%
!! TTACAGAAGACTCTAAGATG+GGG + chr8_2:52534610-52534629 Msa1254420:CDS 35.0%
! AAGATGATGGTGATTCCATT+TGG + chr8_2:52534640-52534659 Msa1254420:CDS 35.0%
! TGATGATGATGAAGATGATG+AGG + chr8_2:52534689-52534708 Msa1254420:CDS 35.0%
TTACTTGATGAACTGTGTGA+GGG + chr8_2:52534795-52534814 Msa1254420:CDS 35.0%
TAGTGATGAAGATGAGATTG+TGG + chr8_2:52534893-52534912 Msa1254420:CDS 35.0%
!!! CTCTGAGATTTTGCATTTGA+AGG + chr8_2:52534947-52534966 Msa1254420:CDS 35.0%
! CTGAGATTTTGCATTTGAAG+GGG + chr8_2:52534949-52534968 Msa1254420:CDS 35.0%
!!! ATATGCTTTCCTTTTGGAGT+TGG - chr8_2:52534978-52534997 None:intergenic 35.0%
!! TCTCTTTTGACACCACTTTT+TGG + chr8_2:52535071-52535090 Msa1254420:three_prime_UTR 35.0%
GGCATAATCATAAGGTAGAT+TGG + chr8_2:52535243-52535262 Msa1254420:three_prime_UTR 35.0%
CTTCTTCAACTTTCTGCAAA+AGG - chr8_2:52534100-52534119 None:intergenic 35.0%
AACAGAAGAAGGTGAAAACT+CGG - chr8_2:52534258-52534277 None:intergenic 35.0%
TGTTCTTGAACAACAGAAGA+AGG - chr8_2:52534269-52534288 None:intergenic 35.0%
AGATTTCTCTGACAAATCTG+AGG + chr8_2:52534587-52534606 Msa1254420:CDS 35.0%
!! GTTACAGAAGACTCTAAGAT+GGG + chr8_2:52534609-52534628 Msa1254420:CDS 35.0%
!! TTACAGAAGACTCTAAGATG+GGG + chr8_2:52534610-52534629 Msa1254420:CDS 35.0%
! AAGATGATGGTGATTCCATT+TGG + chr8_2:52534640-52534659 Msa1254420:CDS 35.0%
! TGATGATGATGAAGATGATG+AGG + chr8_2:52534689-52534708 Msa1254420:CDS 35.0%
TTACTTGATGAACTGTGTGA+GGG + chr8_2:52534795-52534814 Msa1254420:CDS 35.0%
TAGTGATGAAGATGAGATTG+TGG + chr8_2:52534893-52534912 Msa1254420:CDS 35.0%
!!! CTCTGAGATTTTGCATTTGA+AGG + chr8_2:52534947-52534966 Msa1254420:CDS 35.0%
! CTGAGATTTTGCATTTGAAG+GGG + chr8_2:52534949-52534968 Msa1254420:CDS 35.0%
!!! ATATGCTTTCCTTTTGGAGT+TGG - chr8_2:52534978-52534997 None:intergenic 35.0%
!! TCTCTTTTGACACCACTTTT+TGG + chr8_2:52535071-52535090 Msa1254420:three_prime_UTR 35.0%
GGCATAATCATAAGGTAGAT+TGG + chr8_2:52535243-52535262 Msa1254420:three_prime_UTR 35.0%
TGATCTTGTGACTCTTCTTG+CGG - chr8_2:52533567-52533586 None:intergenic 40.0%
TTCAGGGAAGATCGAAGATT+CGG + chr8_2:52533863-52533882 Msa1254420:intron 40.0%
TGTGAACATTGGGGATTTGA+GGG - chr8_2:52534217-52534236 None:intergenic 40.0%
TTGTGAACATTGGGGATTTG+AGG - chr8_2:52534218-52534237 None:intergenic 40.0%
TCAAGAACAACTCATTCCTC+AGG + chr8_2:52534280-52534299 Msa1254420:CDS 40.0%
TCAGAGAAATCTAACAGCAG+TGG - chr8_2:52534579-52534598 None:intergenic 40.0%
! GGTTACAGAAGACTCTAAGA+TGG + chr8_2:52534608-52534627 Msa1254420:CDS 40.0%
AGATGATGAGGAAATAGCTG+AGG + chr8_2:52534701-52534720 Msa1254420:CDS 40.0%
TGAGGAGGATGATTACTATG+AGG + chr8_2:52534734-52534753 Msa1254420:CDS 40.0%
GAGGAGGATGATTACTATGA+GGG + chr8_2:52534735-52534754 Msa1254420:CDS 40.0%
! GAAGAAGAAGAGTATGCTGA+TGG + chr8_2:52534765-52534784 Msa1254420:CDS 40.0%
! AAGAAGAGTATGCTGATGGA+GGG + chr8_2:52534769-52534788 Msa1254420:CDS 40.0%
GTTACTTGATGAACTGTGTG+AGG + chr8_2:52534794-52534813 Msa1254420:CDS 40.0%
AGCAACATAGGTGTGAATGA+AGG + chr8_2:52534822-52534841 Msa1254420:CDS 40.0%
AGGTGTGAATGAAGGAAATG+TGG + chr8_2:52534830-52534849 Msa1254420:CDS 40.0%
AATGTGGTTCCAAAGTTTGC+TGG + chr8_2:52534846-52534865 Msa1254420:CDS 40.0%
! ATGTGGTTCCAAAGTTTGCT+GGG + chr8_2:52534847-52534866 Msa1254420:CDS 40.0%
GTATGTTTCCCAGCAAACTT+TGG - chr8_2:52534858-52534877 None:intergenic 40.0%
TGAAGATGAGATTGTGGAAG+AGG + chr8_2:52534899-52534918 Msa1254420:CDS 40.0%
!! GCATATTCGTTTTTCTGAGG+AGG + chr8_2:52534992-52535011 Msa1254420:CDS 40.0%
GAGCATTCAACCACATGTTA+TGG - chr8_2:52535136-52535155 None:intergenic 40.0%
TGATCTTGTGACTCTTCTTG+CGG - chr8_2:52533567-52533586 None:intergenic 40.0%
TTCAGGGAAGATCGAAGATT+CGG + chr8_2:52533863-52533882 Msa1254420:intron 40.0%
TGTGAACATTGGGGATTTGA+GGG - chr8_2:52534217-52534236 None:intergenic 40.0%
TTGTGAACATTGGGGATTTG+AGG - chr8_2:52534218-52534237 None:intergenic 40.0%
TCAAGAACAACTCATTCCTC+AGG + chr8_2:52534280-52534299 Msa1254420:CDS 40.0%
TCAGAGAAATCTAACAGCAG+TGG - chr8_2:52534579-52534598 None:intergenic 40.0%
! GGTTACAGAAGACTCTAAGA+TGG + chr8_2:52534608-52534627 Msa1254420:CDS 40.0%
AGATGATGAGGAAATAGCTG+AGG + chr8_2:52534701-52534720 Msa1254420:CDS 40.0%
TGAGGAGGATGATTACTATG+AGG + chr8_2:52534734-52534753 Msa1254420:CDS 40.0%
GAGGAGGATGATTACTATGA+GGG + chr8_2:52534735-52534754 Msa1254420:CDS 40.0%
! GAAGAAGAAGAGTATGCTGA+TGG + chr8_2:52534765-52534784 Msa1254420:CDS 40.0%
! AAGAAGAGTATGCTGATGGA+GGG + chr8_2:52534769-52534788 Msa1254420:CDS 40.0%
GTTACTTGATGAACTGTGTG+AGG + chr8_2:52534794-52534813 Msa1254420:CDS 40.0%
AGCAACATAGGTGTGAATGA+AGG + chr8_2:52534822-52534841 Msa1254420:CDS 40.0%
AGGTGTGAATGAAGGAAATG+TGG + chr8_2:52534830-52534849 Msa1254420:CDS 40.0%
AATGTGGTTCCAAAGTTTGC+TGG + chr8_2:52534846-52534865 Msa1254420:CDS 40.0%
! ATGTGGTTCCAAAGTTTGCT+GGG + chr8_2:52534847-52534866 Msa1254420:CDS 40.0%
GTATGTTTCCCAGCAAACTT+TGG - chr8_2:52534858-52534877 None:intergenic 40.0%
TGAAGATGAGATTGTGGAAG+AGG + chr8_2:52534899-52534918 Msa1254420:CDS 40.0%
!! GCATATTCGTTTTTCTGAGG+AGG + chr8_2:52534992-52535011 Msa1254420:CDS 40.0%
GAGCATTCAACCACATGTTA+TGG - chr8_2:52535136-52535155 None:intergenic 40.0%
AAAGGGACAAGCACAACAAC+AGG + chr8_2:52533914-52533933 Msa1254420:CDS 45.0%
GACAAGCACAACAACAGGAT+CGG + chr8_2:52533919-52533938 Msa1254420:CDS 45.0%
TCCAATGATTCTCCCATCGT+TGG + chr8_2:52533960-52533979 Msa1254420:CDS 45.0%
! TGTCGAGTATTGCGAAGCAA+AGG + chr8_2:52534012-52534031 Msa1254420:CDS 45.0%
! GTCGAGTATTGCGAAGCAAA+GGG + chr8_2:52534013-52534032 Msa1254420:CDS 45.0%
! TCGAGTATTGCGAAGCAAAG+GGG + chr8_2:52534014-52534033 Msa1254420:CDS 45.0%
GTGAACATTGGGGATTTGAG+GGG - chr8_2:52534216-52534235 None:intergenic 45.0%
TGGCAGTGTTGTGAACATTG+GGG - chr8_2:52534226-52534245 None:intergenic 45.0%
GTGGCAGTGTTGTGAACATT+GGG - chr8_2:52534227-52534246 None:intergenic 45.0%
AGTGGCAGTGTTGTGAACAT+TGG - chr8_2:52534228-52534247 None:intergenic 45.0%
AATGTTCACAACACTGCCAC+TGG + chr8_2:52534227-52534246 Msa1254420:CDS 45.0%
! TGAAAACTCGGTGAAACCAG+TGG - chr8_2:52534246-52534265 None:intergenic 45.0%
ACAAGACTGTGACAAACCTG+AGG - chr8_2:52534299-52534318 None:intergenic 45.0%
GGAATCACCATCATCTTCTG+TGG - chr8_2:52534637-52534656 None:intergenic 45.0%
AGCTGAGGTAGAAGAAGATG+AGG + chr8_2:52534716-52534735 Msa1254420:CDS 45.0%
TGAGGTAGAAGAAGATGAGG+AGG + chr8_2:52534719-52534738 Msa1254420:CDS 45.0%
! GAAGAAGAGTATGCTGATGG+AGG + chr8_2:52534768-52534787 Msa1254420:CDS 45.0%
TGTGAGGGTTTGAGCAACAT+AGG + chr8_2:52534810-52534829 Msa1254420:CDS 45.0%
ACCTGAATGGAGTTAGTGCT+AGG + chr8_2:52535109-52535128 Msa1254420:three_prime_UTR 45.0%
TCCTAGCACTAACTCCATTC+AGG - chr8_2:52535113-52535132 None:intergenic 45.0%
AGTGCTAGGACCATAACATG+TGG + chr8_2:52535123-52535142 Msa1254420:three_prime_UTR 45.0%
AAAGGGACAAGCACAACAAC+AGG + chr8_2:52533914-52533933 Msa1254420:CDS 45.0%
GACAAGCACAACAACAGGAT+CGG + chr8_2:52533919-52533938 Msa1254420:CDS 45.0%
TCCAATGATTCTCCCATCGT+TGG + chr8_2:52533960-52533979 Msa1254420:CDS 45.0%
! TGTCGAGTATTGCGAAGCAA+AGG + chr8_2:52534012-52534031 Msa1254420:CDS 45.0%
! GTCGAGTATTGCGAAGCAAA+GGG + chr8_2:52534013-52534032 Msa1254420:CDS 45.0%
! TCGAGTATTGCGAAGCAAAG+GGG + chr8_2:52534014-52534033 Msa1254420:CDS 45.0%
GTGAACATTGGGGATTTGAG+GGG - chr8_2:52534216-52534235 None:intergenic 45.0%
TGGCAGTGTTGTGAACATTG+GGG - chr8_2:52534226-52534245 None:intergenic 45.0%
GTGGCAGTGTTGTGAACATT+GGG - chr8_2:52534227-52534246 None:intergenic 45.0%
AGTGGCAGTGTTGTGAACAT+TGG - chr8_2:52534228-52534247 None:intergenic 45.0%
AATGTTCACAACACTGCCAC+TGG + chr8_2:52534227-52534246 Msa1254420:CDS 45.0%
! TGAAAACTCGGTGAAACCAG+TGG - chr8_2:52534246-52534265 None:intergenic 45.0%
ACAAGACTGTGACAAACCTG+AGG - chr8_2:52534299-52534318 None:intergenic 45.0%
GGAATCACCATCATCTTCTG+TGG - chr8_2:52534637-52534656 None:intergenic 45.0%
AGCTGAGGTAGAAGAAGATG+AGG + chr8_2:52534716-52534735 Msa1254420:CDS 45.0%
TGAGGTAGAAGAAGATGAGG+AGG + chr8_2:52534719-52534738 Msa1254420:CDS 45.0%
! GAAGAAGAGTATGCTGATGG+AGG + chr8_2:52534768-52534787 Msa1254420:CDS 45.0%
TGTGAGGGTTTGAGCAACAT+AGG + chr8_2:52534810-52534829 Msa1254420:CDS 45.0%
ACCTGAATGGAGTTAGTGCT+AGG + chr8_2:52535109-52535128 Msa1254420:three_prime_UTR 45.0%
TCCTAGCACTAACTCCATTC+AGG - chr8_2:52535113-52535132 None:intergenic 45.0%
AGTGCTAGGACCATAACATG+TGG + chr8_2:52535123-52535142 Msa1254420:three_prime_UTR 45.0%
TCTTGTGACTCTTCTTGCGG+TGG - chr8_2:52533564-52533583 None:intergenic 50.0%
GCCAACGATGGGAGAATCAT+TGG - chr8_2:52533964-52533983 None:intergenic 50.0%
TGCTTCGCAATACTCGACAG+AGG - chr8_2:52534011-52534030 None:intergenic 50.0%
AACCTGGAGTCTTCTTCACC+CGG - chr8_2:52534043-52534062 None:intergenic 50.0%
GTGAAGAAGACTCCAGGTTC+CGG + chr8_2:52534044-52534063 Msa1254420:CDS 50.0%
!! TTCCGGTGAGGCTTTGTTGA+GGG + chr8_2:52534061-52534080 Msa1254420:CDS 50.0%
GTTGGGGCAAGAAGTTGCAT+TGG - chr8_2:52534182-52534201 None:intergenic 50.0%
ATGGGGTCCACAGAAGATGA+TGG + chr8_2:52534627-52534646 Msa1254420:CDS 50.0%
AAGGGGTTGCCAACTCCAAA+AGG + chr8_2:52534966-52534985 Msa1254420:CDS 50.0%
TCTTGTGACTCTTCTTGCGG+TGG - chr8_2:52533564-52533583 None:intergenic 50.0%
GCCAACGATGGGAGAATCAT+TGG - chr8_2:52533964-52533983 None:intergenic 50.0%
TGCTTCGCAATACTCGACAG+AGG - chr8_2:52534011-52534030 None:intergenic 50.0%
AACCTGGAGTCTTCTTCACC+CGG - chr8_2:52534043-52534062 None:intergenic 50.0%
GTGAAGAAGACTCCAGGTTC+CGG + chr8_2:52534044-52534063 Msa1254420:CDS 50.0%
!! TTCCGGTGAGGCTTTGTTGA+GGG + chr8_2:52534061-52534080 Msa1254420:CDS 50.0%
GTTGGGGCAAGAAGTTGCAT+TGG - chr8_2:52534182-52534201 None:intergenic 50.0%
ATGGGGTCCACAGAAGATGA+TGG + chr8_2:52534627-52534646 Msa1254420:CDS 50.0%
AAGGGGTTGCCAACTCCAAA+AGG + chr8_2:52534966-52534985 Msa1254420:CDS 50.0%
ACCACCTTGACTGCTTCCAG+CGG + chr8_2:52533593-52533612 Msa1254420:CDS 55.0%
AGATGGGATGTTGTTGCCGC+TGG - chr8_2:52533612-52533631 None:intergenic 55.0%
CCATTCGCAAGGCCAACGAT+GGG - chr8_2:52533975-52533994 None:intergenic 55.0%
TCTCGATCTCGCCATTCGCA+AGG - chr8_2:52533986-52534005 None:intergenic 55.0%
TTGCGAAGCAAAGGGGAAGC+CGG + chr8_2:52534021-52534040 Msa1254420:CDS 55.0%
AACAAAGCCTCACCGGAACC+TGG - chr8_2:52534059-52534078 None:intergenic 55.0%
!! GTTCCGGTGAGGCTTTGTTG+AGG + chr8_2:52534060-52534079 Msa1254420:CDS 55.0%
!! TCCGGTGAGGCTTTGTTGAG+GGG + chr8_2:52534062-52534081 Msa1254420:CDS 55.0%
ACCCCTCAACAAAGCCTCAC+CGG - chr8_2:52534066-52534085 None:intergenic 55.0%
!! AGGGGTGTTTGCAGGAGTTG+GGG - chr8_2:52534198-52534217 None:intergenic 55.0%
!! GAGGGGTGTTTGCAGGAGTT+GGG - chr8_2:52534199-52534218 None:intergenic 55.0%
!! TGAGGGGTGTTTGCAGGAGT+TGG - chr8_2:52534200-52534219 None:intergenic 55.0%
!! GGGATTTGAGGGGTGTTTGC+AGG - chr8_2:52534206-52534225 None:intergenic 55.0%
ACCACCTTGACTGCTTCCAG+CGG + chr8_2:52533593-52533612 Msa1254420:CDS 55.0%
AGATGGGATGTTGTTGCCGC+TGG - chr8_2:52533612-52533631 None:intergenic 55.0%
CCATTCGCAAGGCCAACGAT+GGG - chr8_2:52533975-52533994 None:intergenic 55.0%
TCTCGATCTCGCCATTCGCA+AGG - chr8_2:52533986-52534005 None:intergenic 55.0%
TTGCGAAGCAAAGGGGAAGC+CGG + chr8_2:52534021-52534040 Msa1254420:CDS 55.0%
AACAAAGCCTCACCGGAACC+TGG - chr8_2:52534059-52534078 None:intergenic 55.0%
!! GTTCCGGTGAGGCTTTGTTG+AGG + chr8_2:52534060-52534079 Msa1254420:CDS 55.0%
!! TCCGGTGAGGCTTTGTTGAG+GGG + chr8_2:52534062-52534081 Msa1254420:CDS 55.0%
ACCCCTCAACAAAGCCTCAC+CGG - chr8_2:52534066-52534085 None:intergenic 55.0%
!! AGGGGTGTTTGCAGGAGTTG+GGG - chr8_2:52534198-52534217 None:intergenic 55.0%
!! GAGGGGTGTTTGCAGGAGTT+GGG - chr8_2:52534199-52534218 None:intergenic 55.0%
!! TGAGGGGTGTTTGCAGGAGT+TGG - chr8_2:52534200-52534219 None:intergenic 55.0%
!! GGGATTTGAGGGGTGTTTGC+AGG - chr8_2:52534206-52534225 None:intergenic 55.0%
GTTGCCGCTGGAAGCAGTCA+AGG - chr8_2:52533600-52533619 None:intergenic 60.0%
!! CCCATCGTTGGCCTTGCGAA+TGG + chr8_2:52533972-52533991 Msa1254420:CDS 60.0%
GCCATTCGCAAGGCCAACGA+TGG - chr8_2:52533976-52533995 None:intergenic 60.0%
TGCGAAGCAAAGGGGAAGCC+GGG + chr8_2:52534022-52534041 Msa1254420:CDS 60.0%
AGCCGGGTGAAGAAGACTCC+AGG + chr8_2:52534038-52534057 Msa1254420:CDS 60.0%
GAAGACTCCAGGTTCCGGTG+AGG + chr8_2:52534049-52534068 Msa1254420:CDS 60.0%
GTTGCCGCTGGAAGCAGTCA+AGG - chr8_2:52533600-52533619 None:intergenic 60.0%
!! CCCATCGTTGGCCTTGCGAA+TGG + chr8_2:52533972-52533991 Msa1254420:CDS 60.0%
GCCATTCGCAAGGCCAACGA+TGG - chr8_2:52533976-52533995 None:intergenic 60.0%
TGCGAAGCAAAGGGGAAGCC+GGG + chr8_2:52534022-52534041 Msa1254420:CDS 60.0%
AGCCGGGTGAAGAAGACTCC+AGG + chr8_2:52534038-52534057 Msa1254420:CDS 60.0%
GAAGACTCCAGGTTCCGGTG+AGG + chr8_2:52534049-52534068 Msa1254420:CDS 60.0%
GCCGCTGGAAGCAGTCAAGG+TGG - chr8_2:52533597-52533616 None:intergenic 65.0%
GCCGCTGGAAGCAGTCAAGG+TGG - chr8_2:52533597-52533616 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 52533425 52535317 52533425 ID=Msa1254420;Name=Msa1254420
chr8_2 mRNA 52533425 52535317 52533425 ID=Msa1254420-mRNA-1;Parent=Msa1254420;Name=Msa1254420-mRNA-1;_AED=0.05;_eAED=0.05;_QI=120|1|1|1|1|1|3|283|342
chr8_2 exon 52533425 52533635 52533425 ID=Msa1254420-mRNA-1:exon:16085;Parent=Msa1254420-mRNA-1
chr8_2 exon 52533868 52534301 52533868 ID=Msa1254420-mRNA-1:exon:16086;Parent=Msa1254420-mRNA-1
chr8_2 exon 52534531 52535317 52534531 ID=Msa1254420-mRNA-1:exon:16087;Parent=Msa1254420-mRNA-1
chr8_2 five_prime_UTR 52533425 52533544 52533425 ID=Msa1254420-mRNA-1:five_prime_utr;Parent=Msa1254420-mRNA-1
chr8_2 CDS 52533545 52533635 52533545 ID=Msa1254420-mRNA-1:cds;Parent=Msa1254420-mRNA-1
chr8_2 CDS 52533868 52534301 52533868 ID=Msa1254420-mRNA-1:cds;Parent=Msa1254420-mRNA-1
chr8_2 CDS 52534531 52535034 52534531 ID=Msa1254420-mRNA-1:cds;Parent=Msa1254420-mRNA-1
chr8_2 three_prime_UTR 52535035 52535317 52535035 ID=Msa1254420-mRNA-1:three_prime_utr;Parent=Msa1254420-mRNA-1
Gene Sequence

>Msa1254420

ATGGAGACTGCTTCATCCACCGCAAGAAGAGTCACAAGATCACAAACAACCACCTTGACTGCTTCCAGCGGCAACAACATCCCATCTTCAAGGAAGATCGAAGATTCGGAAAAGAATGCTTCGAAATCAAGACAAAGAAAGGGACAAGCACAACAACAGGATCGGTGTGCACTGATCGACATATCCAATGATTCTCCCATCGTTGGCCTTGCGAATGGCGAGATCGAGACACCTCTGTCGAGTATTGCGAAGCAAAGGGGAAGCCGGGTGAAGAAGACTCCAGGTTCCGGTGAGGCTTTGTTGAGGGGTCAAGTGAAGACCCTTTTGCAGAAAGTTGAAGAAGAAGCTGAGATTTCTAAACTGACAATGGATGTTCGTCCTTTTCTTCAATTTGTTAACTCTCCAATGCAACTTCTTGCCCCAACTCCTGCAAACACCCCTCAAATCCCCAATGTTCACAACACTGCCACTGGTTTCACCGAGTTTTCACCTTCTTCTGTTGTTCAAGAACAACTCATTCCTCAGGTGCTGAATCAAGAGAATGTTGAATCTGAAAAGAATGTGCTAAGTCCACTGCTGTTAGATTTCTCTGACAAATCTGAGGTTACAGAAGACTCTAAGATGGGGTCCACAGAAGATGATGGTGATTCCATTTGGTCAATTCAAGTCAATGCAAGCACACATGATGATGATGAAGATGATGAGGAAATAGCTGAGGTAGAAGAAGATGAGGAGGATGATTACTATGAGGGTGTTGAAGAAGAAGAAGAGTATGCTGATGGAGGGTTGTTACTTGATGAACTGTGTGAGGGTTTGAGCAACATAGGTGTGAATGAAGGAAATGTGGTTCCAAAGTTTGCTGGGAAACATACAAGATTTTTGTATGATAGTGATGAAGATGAGATTGTGGAAGAGGTTGTTGAAGAATCTGCTGATTCTAACTCTGAGATTTTGCATTTGAAGGGGTTGCCAACTCCAAAAGGAAAGCATATTCGTTTTTCTGAGGAGGAAGAAAAATCTGATCTGTGA

Protein sequence

>Msa1254420

METASSTARRVTRSQTTTLTASSGNNIPSSRKIEDSEKNASKSRQRKGQAQQQDRCALIDISNDSPIVGLANGEIETPLSSIAKQRGSRVKKTPGSGEALLRGQVKTLLQKVEEEAEISKLTMDVRPFLQFVNSPMQLLAPTPANTPQIPNVHNTATGFTEFSPSSVVQEQLIPQVLNQENVESEKNVLSPLLLDFSDKSEVTEDSKMGSTEDDGDSIWSIQVNASTHDDDEDDEEIAEVEEDEEDDYYEGVEEEEEYADGGLLLDELCEGLSNIGVNEGNVVPKFAGKHTRFLYDSDEDEIVEEVVEESADSNSEILHLKGLPTPKGKHIRFSEEEEKSDL*