AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1305920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1305920 MtrunA17_Chr3g0125051 96.990 299 4 2 1 295 1 298 0.0 572
Msa1305920 MtrunA17_Chr3g0125041 42.143 280 143 7 30 294 25 300 1.44e-49 171
Msa1305920 MtrunA17_Chr3g0138431 65.333 75 26 0 221 295 197 271 4.07e-28 112
Msa1305920 MtrunA17_Chr2g0332171 54.348 92 39 1 204 295 191 279 5.62e-28 112
Msa1305920 MtrunA17_Chr2g0332181 55.952 84 37 0 212 295 142 225 4.66e-25 103
Msa1305920 MtrunA17_Chr1g0152871 57.143 70 28 1 228 295 82 151 4.57e-22 94.7
Msa1305920 MtrunA17_Chr1g0148681 50.649 77 38 0 218 294 137 213 4.19e-21 92.4
Msa1305920 MtrunA17_Chr3g0134421 44.737 76 38 2 222 295 71 144 2.74e-15 75.1
Msa1305920 MtrunA17_Chr3g0134441 59.259 54 20 1 242 293 69 122 2.44e-14 72.4
Msa1305920 MtrunA17_Chr3g0134401 42.647 68 39 0 228 295 65 132 9.73e-14 70.5
Msa1305920 MtrunA17_Chr3g0134431 55.357 56 23 1 241 294 13 68 5.05e-13 67.8
Msa1305920 MtrunA17_Chr3g0134411 45.902 61 31 1 237 295 91 151 4.03e-12 65.9
Msa1305920 MtrunA17_Chr5g0441371 48.649 74 35 3 223 295 150 221 2.70e-11 63.5
Msa1305920 MtrunA17_Chr7g0255771 45.000 80 41 3 217 295 178 255 3.20e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1305920 AT1G44110.1 50.000 302 94 8 1 295 1 252 1.07e-70 226
Msa1305920 AT1G77390.1 74.667 75 19 0 220 294 161 235 3.06e-34 129
Msa1305920 AT1G80370.1 63.158 76 28 0 220 295 180 255 5.57e-27 109
Msa1305920 AT5G25380.2 56.579 76 33 0 220 295 156 231 2.05e-25 105
Msa1305920 AT5G25380.3 56.579 76 33 0 220 295 156 231 2.49e-25 105
Msa1305920 AT5G25380.1 56.579 76 33 0 220 295 156 231 2.49e-25 105
Msa1305920 AT5G25380.4 56.579 76 33 0 220 295 162 237 2.78e-25 105
Msa1305920 AT1G15570.1 61.842 76 29 0 220 295 171 246 3.62e-25 104
Msa1305920 AT5G11300.1 53.947 76 35 0 220 295 155 230 1.31e-24 103
Msa1305920 AT1G47210.1 56.000 75 31 1 223 295 88 162 1.59e-24 98.2
Msa1305920 AT5G11300.2 53.947 76 35 0 220 295 155 230 1.82e-24 102
Msa1305920 AT1G47210.2 56.000 75 31 1 223 295 88 162 2.11e-22 96.3
Msa1305920 AT1G47230.2 46.667 120 55 2 178 295 43 155 9.12e-22 94.4
Msa1305920 AT1G47230.1 57.895 76 30 1 222 295 80 155 9.21e-22 94.4
Msa1305920 AT5G43080.2 54.167 72 33 0 223 294 73 144 1.03e-21 94.0
Msa1305920 AT5G43080.1 54.167 72 33 0 223 294 73 144 1.05e-21 94.0
Msa1305920 AT1G47220.1 56.000 75 31 1 223 295 42 116 1.08e-20 90.9

Find 62 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGATGGAATGTCGGTTTCTA+TGG 0.268944 8_4:+333062 Msa1305920:CDS
TGCTACTACCTTCAATGTTC+CGG 0.342483 8_4:+333002 Msa1305920:CDS
TGTTCCGGTTTCGAGTAGTA+TGG 0.365772 8_4:+333017 Msa1305920:CDS
TTATCCACATATTCAATATC+AGG 0.391534 8_4:-333120 None:intergenic
AAGGCCTTCAACAGACTTCA+TGG 0.391707 8_4:+333969 Msa1305920:CDS
TTCTCCATGAAGTCTGTTGA+AGG 0.403745 8_4:-333973 None:intergenic
CATTCTTGTTGAGTTGGAAA+AGG 0.405665 8_4:+333357 Msa1305920:CDS
TCTGATGTTAAAGCGGTAAC+AGG 0.410705 8_4:-332550 None:intergenic
TCTGATTCTAATTACCCATC+AGG 0.416400 8_4:+333201 Msa1305920:CDS
AGTGAGCGGAGGTCGCTTCT+TGG 0.416428 8_4:-332605 None:intergenic
AGTTGTTCCTCCTCCTCCAT+TGG 0.434223 8_4:+332975 Msa1305920:CDS
CAAAGTGGATGAATTGTTGC+GGG 0.435643 8_4:-332650 None:intergenic
TTCTTCAACAACGTCGTCAA+TGG 0.439569 8_4:+332513 Msa1305920:CDS
TAGAGACATTCTTGTTGAGT+TGG 0.451678 8_4:+333351 Msa1305920:CDS
CCGCAACAATTCATCCACTT+TGG 0.458460 8_4:+332651 Msa1305920:CDS
AATCAATATAGCACGCATGC+TGG 0.468536 8_4:-334016 None:intergenic
TGAAGTAGTAGTAATGGCCT+TGG 0.476179 8_4:-332932 None:intergenic
TGCGTGCTATATTGATTGAT+TGG 0.477631 8_4:+334022 Msa1305920:CDS
ATTCTTGTTGAGTTGGAAAA+GGG 0.479932 8_4:+333358 Msa1305920:CDS
GATTTAACATTCGACAAAGT+AGG 0.483352 8_4:-332889 None:intergenic
TAATATTGATAATGATTACA+TGG 0.483673 8_4:+333393 Msa1305920:CDS
TACTGTCAAATACAATGTAT+CGG 0.485089 8_4:-334263 None:intergenic
AAATCCATACTACTCGAAAC+CGG 0.496469 8_4:-333021 None:intergenic
ACTCGAAACCGGAACATTGA+AGG 0.503350 8_4:-333010 None:intergenic
TGGAATCTCAGACAAAGAAA+AGG 0.505760 8_4:+333950 Msa1305920:intron
GAGTCCTGATATTGAATATG+TGG 0.508164 8_4:+333116 Msa1305920:CDS
ATCAATATAGCACGCATGCT+GGG 0.519454 8_4:-334015 None:intergenic
CGGAGGTCGCTTCTTGGCAG+AGG 0.523214 8_4:-332599 None:intergenic
AAGAAAGAAAGAAAAGAGAG+TGG 0.523885 8_4:-332336 None:intergenic
GAAGTAGTAGTAATGGCCTT+GGG 0.526382 8_4:-332931 None:intergenic
CTCTCAATAGAATCAACAGC+TGG 0.529999 8_4:-333153 None:intergenic
ACTGTCAAATACAATGTATC+GGG 0.535115 8_4:-334262 None:intergenic
GCAGCAACCAATGGAGGAGG+AGG 0.539858 8_4:-332982 None:intergenic
TCATCTCCTGGTAAATCCGA+TGG 0.546673 8_4:+333045 Msa1305920:CDS
GAAGAAGAATTGCATGGTGA+AGG 0.552536 8_4:-332838 None:intergenic
CTTGTAGATATCACAGGCAA+AGG 0.560239 8_4:-333434 None:intergenic
AGTATGGATTTATCATCTCC+TGG 0.561386 8_4:+333033 Msa1305920:CDS
AAATGATGAAGTAGTAGTAA+TGG 0.564314 8_4:-332938 None:intergenic
CATAGAAACCGACATTCCAT+CGG 0.576594 8_4:-333061 None:intergenic
GATGTTAAAGCGGTAACAGG+TGG 0.582716 8_4:-332547 None:intergenic
GTAGCAGCAACCAATGGAGG+AGG 0.586970 8_4:-332985 None:intergenic
ATGTTAAAGCGGTAACAGGT+GGG 0.589966 8_4:-332546 None:intergenic
GTAACAAAATGTAACCTGAT+GGG 0.593425 8_4:-333215 None:intergenic
CCAAAGTGGATGAATTGTTG+CGG 0.593438 8_4:-332651 None:intergenic
TGGTAAATCCGATGGAATGT+CGG 0.594531 8_4:+333053 Msa1305920:CDS
CAAGCATCTACGTGCATCTG+AGG 0.600841 8_4:+333453 Msa1305920:CDS
ATTGATTGATTGGCTAGTGG+AGG 0.603421 8_4:+334032 Msa1305920:CDS
GACATTCCATCGGATTTACC+AGG 0.603450 8_4:-333051 None:intergenic
CAGCTGTTGATTCTATTGAG+AGG 0.606902 8_4:+333154 Msa1305920:CDS
AAGGTAGTAGCAGCAACCAA+TGG 0.611035 8_4:-332991 None:intergenic
GCAAAGGTAGCACAGAGTTG+AGG 0.614108 8_4:-333418 None:intergenic
CTTCATGGAGAAAATTCAGA+AGG 0.619401 8_4:+333984 Msa1305920:CDS
TAGATGCTTGTAGATATCAC+AGG 0.621919 8_4:-333440 None:intergenic
AATTAGAATCAGAAATGTTG+AGG 0.628229 8_4:-333191 None:intergenic
GTAGTAGCAGCAACCAATGG+AGG 0.630049 8_4:-332988 None:intergenic
TATATTGATTGATTGGCTAG+TGG 0.635001 8_4:+334029 Msa1305920:CDS
AGGTCGCTTCTTGGCAGAGG+CGG 0.640133 8_4:-332596 None:intergenic
TTGGTGAGGTTAGTGAGCGG+AGG 0.642894 8_4:-332616 None:intergenic
TGATTGGTGAGGTTAGTGAG+CGG 0.659282 8_4:-332619 None:intergenic
GAGCTTGAAGAAGAATTGCA+TGG 0.661998 8_4:-332844 None:intergenic
GTTGTTCTCTGATGTTAAAG+CGG 0.669653 8_4:-332557 None:intergenic
TTAACATCAGAGAACAACGC+CGG 0.712549 8_4:+332562 Msa1305920:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAATTTTGTTATTTATGA+AGG - chr8_4:332292-332311 None:intergenic 10.0%
!!! TAATATTGATAATGATTACA+TGG + chr8_4:333393-333412 Msa1305920:CDS 15.0%
!! ACAATATATAAAAAGACTAA+TGG - chr8_4:334870-334889 None:intergenic 15.0%
!! TAAATTGAAGAATTTAAAGA+AGG + chr8_4:335059-335078 Msa1305920:intron 15.0%
!! AAATTGAAGAATTTAAAGAA+GGG + chr8_4:335060-335079 Msa1305920:intron 15.0%
!!! AATCTTTAAAGAAGATGAAA+GGG - chr8_4:332692-332711 None:intergenic 20.0%
!!! ATTATAACGATTTTGGAATT+GGG + chr8_4:332767-332786 Msa1305920:intron 20.0%
!! TTAATAACTGTTCTGATATA+TGG + chr8_4:333557-333576 Msa1305920:intron 20.0%
!! ACTAGTTAGTGAAAAAAATT+GGG + chr8_4:333663-333682 Msa1305920:intron 20.0%
!! AATCAACTCTATATTCTAAT+TGG - chr8_4:334168-334187 None:intergenic 20.0%
!! AAAAAGACTAATGGAATAAA+AGG - chr8_4:334861-334880 None:intergenic 20.0%
!! AAAACAACTTATAATTTGGA+AGG - chr8_4:334938-334957 None:intergenic 20.0%
!!! TTCCAAATTATAAGTTGTTT+TGG + chr8_4:334937-334956 Msa1305920:intron 20.0%
!! ATTATCCTTCATAAATGTTA+TGG + chr8_4:335030-335049 Msa1305920:intron 20.0%
!!! AACTTCTTTTACTTTTGCTA+TGG - chr8_4:332411-332430 None:intergenic 25.0%
! GGAAAAAAAAAATACCAAAG+TGG - chr8_4:332668-332687 None:intergenic 25.0%
!! GAATCTTTAAAGAAGATGAA+AGG - chr8_4:332693-332712 None:intergenic 25.0%
! ATCACGCATAAAATTCAAAT+GGG - chr8_4:332749-332768 None:intergenic 25.0%
! AATCACGCATAAAATTCAAA+TGG - chr8_4:332750-332769 None:intergenic 25.0%
!!! GATTATAACGATTTTGGAAT+TGG + chr8_4:332766-332785 Msa1305920:intron 25.0%
! AAATGATGAAGTAGTAGTAA+TGG - chr8_4:332941-332960 None:intergenic 25.0%
! TTATCCACATATTCAATATC+AGG - chr8_4:333123-333142 None:intergenic 25.0%
! AATTAGAATCAGAAATGTTG+AGG - chr8_4:333194-333213 None:intergenic 25.0%
!!! CTAATGATTGATTTGTTTTC+AGG + chr8_4:333316-333335 Msa1305920:intron 25.0%
! ATATAGATCATTGTCAACAT+GGG - chr8_4:333492-333511 None:intergenic 25.0%
! AATATAGATCATTGTCAACA+TGG - chr8_4:333493-333512 None:intergenic 25.0%
! CACTAGTTAGTGAAAAAAAT+TGG + chr8_4:333662-333681 Msa1305920:intron 25.0%
!!! TTATTATTGTTTTTACAGCC+AGG + chr8_4:333850-333869 Msa1305920:intron 25.0%
!! CTTATCTTTTCCAAATTTTC+TGG + chr8_4:333930-333949 Msa1305920:intron 25.0%
! TTGAATCAAAATGTAGGAAT+TGG - chr8_4:334095-334114 None:intergenic 25.0%
! GACTAATTGAATCAAAATGT+AGG - chr8_4:334101-334120 None:intergenic 25.0%
!!! TTTTGATTCAATTAGTCATG+TGG + chr8_4:334104-334123 Msa1305920:intron 25.0%
! TACTGTCAAATACAATGTAT+CGG - chr8_4:334266-334285 None:intergenic 25.0%
!!! TTCGTATGAGTTTTATTTGT+TGG + chr8_4:334519-334538 Msa1305920:intron 25.0%
! ATACTAATACAATTGCTTAC+AGG + chr8_4:334900-334919 Msa1305920:intron 25.0%
!!! GTTTCTTAATTTGTGTGAAT+TGG - chr8_4:334963-334982 None:intergenic 25.0%
!! CTTTTCCATAACATTTATGA+AGG - chr8_4:335038-335057 None:intergenic 25.0%
! TAAAGAAGGGAAGATAATAA+TGG + chr8_4:335073-335092 Msa1305920:intron 25.0%
! AAAGAAGGGAAGATAATAAT+GGG + chr8_4:335074-335093 Msa1305920:intron 25.0%
! GTATGATAGTATTAACGATT+TGG - chr8_4:335146-335165 None:intergenic 25.0%
!! TACAATTGATTAAGAGTATG+AGG + chr8_4:335163-335182 Msa1305920:intron 25.0%
! TTGATATATTGTCGTTATGT+AGG + chr8_4:335208-335227 Msa1305920:intron 25.0%
AAGAAAGAAAGAAAAGAGAG+TGG - chr8_4:332339-332358 None:intergenic 30.0%
! ATGCGTGATTATAACGATTT+TGG + chr8_4:332760-332779 Msa1305920:intron 30.0%
!! TGGGTTGTTGTTAATTTTGT+AGG + chr8_4:332786-332805 Msa1305920:intron 30.0%
GATTTAACATTCGACAAAGT+AGG - chr8_4:332892-332911 None:intergenic 30.0%
! ACTACTACTTCATCATTTTC+TGG + chr8_4:332943-332962 Msa1305920:CDS 30.0%
GTAACAAAATGTAACCTGAT+GGG - chr8_4:333218-333237 None:intergenic 30.0%
AGTAACAAAATGTAACCTGA+TGG - chr8_4:333219-333238 None:intergenic 30.0%
!!! GATTACCCTTTTGATTTTAC+TGG + chr8_4:333276-333295 Msa1305920:intron 30.0%
ATGCACCAGTAAAATCAAAA+GGG - chr8_4:333284-333303 None:intergenic 30.0%
AATGCACCAGTAAAATCAAA+AGG - chr8_4:333285-333304 None:intergenic 30.0%
!! ATTCTTGTTGAGTTGGAAAA+GGG + chr8_4:333358-333377 Msa1305920:CDS 30.0%
! TACATTTTATCCTTTGCCAA+AGG + chr8_4:333520-333539 Msa1305920:intron 30.0%
AAACTCAAAATCAATGCCTT+TGG - chr8_4:333539-333558 None:intergenic 30.0%
! ATTAATCACTTAAGAGTGCA+TGG + chr8_4:333791-333810 Msa1305920:intron 30.0%
!! AATTTGTTACATTACTGTCC+TGG - chr8_4:333871-333890 None:intergenic 30.0%
! TATATTGATTGATTGGCTAG+TGG + chr8_4:334029-334048 Msa1305920:CDS 30.0%
AATTAGTCATGTGGTCAATT+TGG + chr8_4:334113-334132 Msa1305920:intron 30.0%
ACTGTCAAATACAATGTATC+GGG - chr8_4:334265-334284 None:intergenic 30.0%
!! TGTTAAAAGCGCTATTTATG+AGG + chr8_4:334426-334445 Msa1305920:intron 30.0%
GGTTACACTACTACAAAATT+GGG - chr8_4:334463-334482 None:intergenic 30.0%
AGGTTACACTACTACAAAAT+TGG - chr8_4:334464-334483 None:intergenic 30.0%
! ATTTTGTAGTAGTGTAACCT+AGG + chr8_4:334464-334483 Msa1305920:intron 30.0%
CTCAAACAATAACTATAGGT+CGG - chr8_4:334495-334514 None:intergenic 30.0%
GCTTCTCAAACAATAACTAT+AGG - chr8_4:334499-334518 None:intergenic 30.0%
GGTTTCATTAAATCATACGT+AGG + chr8_4:334540-334559 Msa1305920:intron 30.0%
TGAGAAAACAAACAACTATG+TGG - chr8_4:334568-334587 None:intergenic 30.0%
! GTTCGTGATTCAGATTTTAA+CGG - chr8_4:334642-334661 None:intergenic 30.0%
CTTTATTACTTGTGACACTT+TGG + chr8_4:334784-334803 Msa1305920:intron 30.0%
GGCCAAAACAACTTATAATT+TGG - chr8_4:334942-334961 None:intergenic 30.0%
!! ATAATGGGTAAGGGTATAAT+AGG + chr8_4:335089-335108 Msa1305920:intron 30.0%
! AGGAATTGTGCTTTTGATGA+GGG - chr8_4:332272-332291 None:intergenic 35.0%
! AAGGAATTGTGCTTTTGATG+AGG - chr8_4:332273-332292 None:intergenic 35.0%
GTTGTTCTCTGATGTTAAAG+CGG - chr8_4:332560-332579 None:intergenic 35.0%
! CTTTAAAGAAGATGAAAGGG+TGG - chr8_4:332689-332708 None:intergenic 35.0%
! TACTGTGAATGTTTTTCCCA+AGG + chr8_4:332915-332934 Msa1305920:CDS 35.0%
! CTACTTCATCATTTTCTGGA+AGG + chr8_4:332947-332966 Msa1305920:CDS 35.0%
AAATCCATACTACTCGAAAC+CGG - chr8_4:333024-333043 None:intergenic 35.0%
AGTATGGATTTATCATCTCC+TGG + chr8_4:333033-333052 Msa1305920:CDS 35.0%
GAGTCCTGATATTGAATATG+TGG + chr8_4:333116-333135 Msa1305920:CDS 35.0%
TCTGATTCTAATTACCCATC+AGG + chr8_4:333201-333220 Msa1305920:CDS 35.0%
TAGAGACATTCTTGTTGAGT+TGG + chr8_4:333351-333370 Msa1305920:CDS 35.0%
!! CATTCTTGTTGAGTTGGAAA+AGG + chr8_4:333357-333376 Msa1305920:CDS 35.0%
TAGATGCTTGTAGATATCAC+AGG - chr8_4:333443-333462 None:intergenic 35.0%
AAAATCAATGCCTTTGGCAA+AGG - chr8_4:333533-333552 None:intergenic 35.0%
TGATTAATGAGCTTCAACGA+AGG - chr8_4:333779-333798 None:intergenic 35.0%
! GTCTGAGATTCCAGAAAATT+TGG - chr8_4:333943-333962 None:intergenic 35.0%
TGGAATCTCAGACAAAGAAA+AGG + chr8_4:333950-333969 Msa1305920:intron 35.0%
CTTCATGGAGAAAATTCAGA+AGG + chr8_4:333984-334003 Msa1305920:CDS 35.0%
! TGCGTGCTATATTGATTGAT+TGG + chr8_4:334022-334041 Msa1305920:CDS 35.0%
CTTGTGGTCAATTAGTTATG+TGG + chr8_4:334063-334082 Msa1305920:intron 35.0%
GATAATTAGCACACACAAAG+AGG - chr8_4:334197-334216 None:intergenic 35.0%
CTATATCTATTTCCAACTGC+AGG + chr8_4:334216-334235 Msa1305920:intron 35.0%
TACATCGATCGATATCTTTC+TGG + chr8_4:334289-334308 Msa1305920:intron 35.0%
ACATCGATCGATATCTTTCT+GGG + chr8_4:334290-334309 Msa1305920:intron 35.0%
TAAGTTTATCGTTCTCCACA+TGG - chr8_4:334761-334780 None:intergenic 35.0%
!! AGGGAAGATAATAATGGGTA+AGG + chr8_4:335079-335098 Msa1305920:intron 35.0%
!! GGGAAGATAATAATGGGTAA+GGG + chr8_4:335080-335099 Msa1305920:intron 35.0%
! AATTGTGCTTTTGATGAGGG+GGG - chr8_4:332269-332288 None:intergenic 40.0%
! GAATTGTGCTTTTGATGAGG+GGG - chr8_4:332270-332289 None:intergenic 40.0%
! GGAATTGTGCTTTTGATGAG+GGG - chr8_4:332271-332290 None:intergenic 40.0%
!! TCAGAGCGTTTCTTTTGCTT+TGG - chr8_4:332386-332405 None:intergenic 40.0%
TTCTTCAACAACGTCGTCAA+TGG + chr8_4:332513-332532 Msa1305920:CDS 40.0%
ATGTTAAAGCGGTAACAGGT+GGG - chr8_4:332549-332568 None:intergenic 40.0%
TCTGATGTTAAAGCGGTAAC+AGG - chr8_4:332553-332572 None:intergenic 40.0%
TTAACATCAGAGAACAACGC+CGG + chr8_4:332562-332581 Msa1305920:CDS 40.0%
!!! GGGAAGAATTTTGATTGGTG+AGG - chr8_4:332633-332652 None:intergenic 40.0%
!! GTTGCGGGAAGAATTTTGAT+TGG - chr8_4:332638-332657 None:intergenic 40.0%
CAAAGTGGATGAATTGTTGC+GGG - chr8_4:332653-332672 None:intergenic 40.0%
CCAAAGTGGATGAATTGTTG+CGG - chr8_4:332654-332673 None:intergenic 40.0%
GAAGAAGAATTGCATGGTGA+AGG - chr8_4:332841-332860 None:intergenic 40.0%
GAGCTTGAAGAAGAATTGCA+TGG - chr8_4:332847-332866 None:intergenic 40.0%
GGGAAAAACATTCACAGTAG+CGG - chr8_4:332914-332933 None:intergenic 40.0%
GAAGTAGTAGTAATGGCCTT+GGG - chr8_4:332934-332953 None:intergenic 40.0%
TGAAGTAGTAGTAATGGCCT+TGG - chr8_4:332935-332954 None:intergenic 40.0%
TGCTACTACCTTCAATGTTC+CGG + chr8_4:333002-333021 Msa1305920:CDS 40.0%
TGGTAAATCCGATGGAATGT+CGG + chr8_4:333053-333072 Msa1305920:CDS 40.0%
CATAGAAACCGACATTCCAT+CGG - chr8_4:333064-333083 None:intergenic 40.0%
CTCTCAATAGAATCAACAGC+TGG - chr8_4:333156-333175 None:intergenic 40.0%
!! CAGCTGTTGATTCTATTGAG+AGG + chr8_4:333154-333173 Msa1305920:CDS 40.0%
CTTGTAGATATCACAGGCAA+AGG - chr8_4:333437-333456 None:intergenic 40.0%
!! TTTAACCCTCCGTTTTTCGA+GGG + chr8_4:333686-333705 Msa1305920:intron 40.0%
AATTTCCCTCGAAAAACGGA+GGG - chr8_4:333694-333713 None:intergenic 40.0%
!!! TCCGTTTTTCGAGGGAAATT+GGG + chr8_4:333694-333713 Msa1305920:intron 40.0%
ACCCAATTTCCCTCGAAAAA+CGG - chr8_4:333698-333717 None:intergenic 40.0%
TCTAGCTAGGAGAGTAAACT+TGG + chr8_4:333735-333754 Msa1305920:intron 40.0%
TTCTCCATGAAGTCTGTTGA+AGG - chr8_4:333976-333995 None:intergenic 40.0%
ATCAATATAGCACGCATGCT+GGG - chr8_4:334018-334037 None:intergenic 40.0%
AATCAATATAGCACGCATGC+TGG - chr8_4:334019-334038 None:intergenic 40.0%
! ATTGATTGATTGGCTAGTGG+AGG + chr8_4:334032-334051 Msa1305920:CDS 40.0%
AGTGGAGGTAATGTTTCTTG+TGG + chr8_4:334047-334066 Msa1305920:intron 40.0%
TATCTATTTCCAACTGCAGG+TGG + chr8_4:334219-334238 Msa1305920:intron 40.0%
TTAATTCCAACAAAGACGCG+AGG + chr8_4:334592-334611 Msa1305920:intron 40.0%
TAATTCCAACAAAGACGCGA+GGG + chr8_4:334593-334612 Msa1305920:intron 40.0%
TCACGAACCTAATCTTGCAT+TGG + chr8_4:334654-334673 Msa1305920:intron 40.0%
CACGAACCTAATCTTGCATT+GGG + chr8_4:334655-334674 Msa1305920:intron 40.0%
AAGTTGAACGACAATCCATG+TGG + chr8_4:334743-334762 Msa1305920:intron 40.0%
ACACTCTCTCGAAACAATGA+TGG - chr8_4:334828-334847 None:intergenic 40.0%
GATGTTAAAGCGGTAACAGG+TGG - chr8_4:332550-332569 None:intergenic 45.0%
TGATTGGTGAGGTTAGTGAG+CGG - chr8_4:332622-332641 None:intergenic 45.0%
CCGCAACAATTCATCCACTT+TGG + chr8_4:332651-332670 Msa1305920:CDS 45.0%
AAGGTAGTAGCAGCAACCAA+TGG - chr8_4:332994-333013 None:intergenic 45.0%
ACTCGAAACCGGAACATTGA+AGG - chr8_4:333013-333032 None:intergenic 45.0%
! TGTTCCGGTTTCGAGTAGTA+TGG + chr8_4:333017-333036 Msa1305920:CDS 45.0%
TCATCTCCTGGTAAATCCGA+TGG + chr8_4:333045-333064 Msa1305920:CDS 45.0%
GACATTCCATCGGATTTACC+AGG - chr8_4:333054-333073 None:intergenic 45.0%
!! CGATGGAATGTCGGTTTCTA+TGG + chr8_4:333062-333081 Msa1305920:CDS 45.0%
!! GTTTAACCCTCCGTTTTTCG+AGG + chr8_4:333685-333704 Msa1305920:intron 45.0%
CAATTTCCCTCGAAAAACGG+AGG - chr8_4:333695-333714 None:intergenic 45.0%
!!! CTCCGTTTTTCGAGGGAAAT+TGG + chr8_4:333693-333712 Msa1305920:intron 45.0%
GAAGTCTGATTGCTCTAGCT+AGG + chr8_4:333722-333741 Msa1305920:intron 45.0%
CAACGAAGGTCAGATCGATT+CGG - chr8_4:333765-333784 None:intergenic 45.0%
AAGGCCTTCAACAGACTTCA+TGG + chr8_4:333969-333988 Msa1305920:CDS 45.0%
ACTATAGGTCGGACTAACCT+AGG - chr8_4:334484-334503 None:intergenic 45.0%
AATTCCAACAAAGACGCGAG+GGG + chr8_4:334594-334613 Msa1305920:intron 45.0%
AACCTAATCTTGCATTGGGC+AGG + chr8_4:334659-334678 Msa1305920:intron 45.0%
ACCTAATCTTGCATTGGGCA+GGG + chr8_4:334660-334679 Msa1305920:intron 45.0%
TTTGATGAGGGGGGAAGTGA+AGG - chr8_4:332260-332279 None:intergenic 50.0%
! AGAGGCGGCTAAGACTTTTC+CGG - chr8_4:332584-332603 None:intergenic 50.0%
AGTTGTTCCTCCTCCTCCAT+TGG + chr8_4:332975-332994 Msa1305920:CDS 50.0%
GTAGTAGCAGCAACCAATGG+AGG - chr8_4:332991-333010 None:intergenic 50.0%
GCAAAGGTAGCACAGAGTTG+AGG - chr8_4:333421-333440 None:intergenic 50.0%
CAAGCATCTACGTGCATCTG+AGG + chr8_4:333453-333472 Msa1305920:CDS 50.0%
ATTCCAACAAAGACGCGAGG+GGG + chr8_4:334595-334614 Msa1305920:intron 50.0%
TTGGTGAGGTTAGTGAGCGG+AGG - chr8_4:332619-332638 None:intergenic 55.0%
GTAGCAGCAACCAATGGAGG+AGG - chr8_4:332988-333007 None:intergenic 55.0%
ACTCTTCAGCCACCTGCAGT+TGG - chr8_4:334231-334250 None:intergenic 55.0%
TTCCAACAAAGACGCGAGGG+GGG + chr8_4:334596-334615 Msa1305920:intron 55.0%
GCCCTGCCCAATGCAAGATT+AGG - chr8_4:334664-334683 None:intergenic 55.0%
AGGTCGCTTCTTGGCAGAGG+CGG - chr8_4:332599-332618 None:intergenic 60.0%
AGTGAGCGGAGGTCGCTTCT+TGG - chr8_4:332608-332627 None:intergenic 60.0%
GCAGCAACCAATGGAGGAGG+AGG - chr8_4:332985-333004 None:intergenic 60.0%
ATCCCCCCTCGCGTCTTTGT+TGG - chr8_4:334601-334620 None:intergenic 60.0%
AAGACGCGAGGGGGGATTCA+AGG + chr8_4:334604-334623 Msa1305920:intron 60.0%
CGGAGGTCGCTTCTTGGCAG+AGG - chr8_4:332602-332621 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 332251 335235 332251 ID=Msa1305920;Name=Msa1305920
chr8_4 mRNA 332251 335235 332251 ID=Msa1305920-mRNA-1;Parent=Msa1305920;Name=Msa1305920-mRNA-1;_AED=0.08;_eAED=0.08;_QI=227|0.8|0.66|0.83|0.8|0.66|6|0|296
chr8_4 exon 332251 332672 332251 ID=Msa1305920-mRNA-1:exon:49;Parent=Msa1305920-mRNA-1
chr8_4 exon 332808 333222 332808 ID=Msa1305920-mRNA-1:exon:50;Parent=Msa1305920-mRNA-1
chr8_4 exon 333338 333474 333338 ID=Msa1305920-mRNA-1:exon:51;Parent=Msa1305920-mRNA-1
chr8_4 exon 333961 334053 333961 ID=Msa1305920-mRNA-1:exon:52;Parent=Msa1305920-mRNA-1
chr8_4 exon 334238 334282 334238 ID=Msa1305920-mRNA-1:exon:53;Parent=Msa1305920-mRNA-1
chr8_4 exon 335230 335235 335230 ID=Msa1305920-mRNA-1:exon:54;Parent=Msa1305920-mRNA-1
chr8_4 five_prime_UTR 332251 332477 332251 ID=Msa1305920-mRNA-1:five_prime_utr;Parent=Msa1305920-mRNA-1
chr8_4 CDS 332478 332672 332478 ID=Msa1305920-mRNA-1:cds;Parent=Msa1305920-mRNA-1
chr8_4 CDS 332808 333222 332808 ID=Msa1305920-mRNA-1:cds;Parent=Msa1305920-mRNA-1
chr8_4 CDS 333338 333474 333338 ID=Msa1305920-mRNA-1:cds;Parent=Msa1305920-mRNA-1
chr8_4 CDS 333961 334053 333961 ID=Msa1305920-mRNA-1:cds;Parent=Msa1305920-mRNA-1
chr8_4 CDS 334238 334282 334238 ID=Msa1305920-mRNA-1:cds;Parent=Msa1305920-mRNA-1
chr8_4 CDS 335230 335235 335230 ID=Msa1305920-mRNA-1:cds;Parent=Msa1305920-mRNA-1
Gene Sequence

>Msa1305920

ATGTCAAATCATAATAATCGTCGTTCATCGTTTTCTTCTTCAACAACGTCGTCAATGGCAAAACGACACCCACCTGTTACCGCTTTAACATCAGAGAACAACGCCGGAAAAGTCTTAGCCGCCTCTGCCAAGAAGCGACCTCCGCTCACTAACCTCACCAATCAAAATTCTTCCCGCAACAATTCATCCACTTTGGTAACTAAAGTTGCAAAGACAAAGAAAGAACCTTCACCATGCAATTCTTCTTCAAGCTCTGTGATTTCTGTTAACAAAAAACCTACTTTGTCGAATGTTAAATCCGCTACTGTGAATGTTTTTCCCAAGGCCATTACTACTACTTCATCATTTTCTGGAAGGAATGAAGTTGTTCCTCCTCCTCCATTGGTTGCTGCTACTACCTTCAATGTTCCGGTTTCGAGTAGTATGGATTTATCATCTCCTGGTAAATCCGATGGAATGTCGGTTTCTATGGACGAGACAATGTCGTCGTGTGATTCTTTCAAGAGTCCTGATATTGAATATGTGGATAACAGTGATGTTCCAGCTGTTGATTCTATTGAGAGGAAGACTTTTTGTAGCCTCAACATTTCTGATTCTAATTACCCATCAGGTAACATTTGTAGTAGAGACATTCTTGTTGAGTTGGAAAAGGGAGAGAAAATTGTTAATATTGATAATGATTACATGGATCCTCAACTCTGTGCTACCTTTGCCTGTGATATCTACAAGCATCTACGTGCATCTGAGACAAAGAAAAGGCCTTCAACAGACTTCATGGAGAAAATTCAGAAGGACATTAATCCCAGCATGCGTGCTATATTGATTGATTGGCTAGTGGAGGTGGCTGAAGAGTATAGACTTGTACCCGATACATTGTATTTGACAGAATAA

Protein sequence

>Msa1305920

MSNHNNRRSSFSSSTTSSMAKRHPPVTALTSENNAGKVLAASAKKRPPLTNLTNQNSSRNNSSTLVTKVAKTKKEPSPCNSSSSSVISVNKKPTLSNVKSATVNVFPKAITTTSSFSGRNEVVPPPPLVAATTFNVPVSSSMDLSSPGKSDGMSVSMDETMSSCDSFKSPDIEYVDNSDVPAVDSIERKTFCSLNISDSNYPSGNICSRDILVELEKGEKIVNIDNDYMDPQLCATFACDIYKHLRASETKKRPSTDFMEKIQKDINPSMRAILIDWLVEVAEEYRLVPDTLYLTE*