AlfalfaGEDB | Msa1305920

M. sativa cultivar zhongmu-4 / Msa1305920

KEGG: K06627
GO: GO:0000003 GO:0000280 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006996 GO:0007049 GO:0007135 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009556 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051321 GO:0051445 GO:0051704 GO:0051726 GO:0061983 GO:0065007 GO:0071840 GO:0140013 GO:1903046 GO:2000241
PFAM: PF00134.26

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1305920	KEH35325.1	96.990	299	4	2	1	295	1	298	0.0	573

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1305920	sp\|Q9C6Y3\|CCA11_ARATH	50.000	302	94	8	1	295	1	252	1.06e-69	226

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1305920	A0A072VAX7	96.990	299	4	2	1	295	1	298	0.0	573

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005020	Msa1305920	0.816073	6.673343e-52	-8.615850e-47
Msa0015570	Msa1305920	0.832031	1.191989e-55	-8.615850e-47
Msa0016040	Msa1305920	0.821374	4.177816e-53	-8.615850e-47
Msa0016530	Msa1305920	0.846795	1.734886e-59	-8.615850e-47
Msa0018920	Msa1305920	0.856879	2.386609e-62	-8.615850e-47
Msa0019930	Msa1305920	0.827803	1.278647e-54	-8.615850e-47
Msa0020540	Msa1305920	0.866000	3.924602e-65	-8.615850e-47
Msa0027800	Msa1305920	0.859516	3.918233e-63	-8.615850e-47
Msa0030070	Msa1305920	0.860353	2.190964e-63	-8.615850e-47
Msa0030690	Msa1305920	0.824248	8.945808e-54	-8.615850e-47

Showing 1 to 10 of 437 entries

Previous1 2 3 4 5…44Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1305920	MtrunA17_Chr3g0125051	96.990	299	4	2	1	295	1	298	0.0	572
Msa1305920	MtrunA17_Chr3g0125041	42.143	280	143	7	30	294	25	300	1.44e-49	171
Msa1305920	MtrunA17_Chr3g0138431	65.333	75	26	0	221	295	197	271	4.07e-28	112
Msa1305920	MtrunA17_Chr2g0332171	54.348	92	39	1	204	295	191	279	5.62e-28	112
Msa1305920	MtrunA17_Chr2g0332181	55.952	84	37	0	212	295	142	225	4.66e-25	103
Msa1305920	MtrunA17_Chr1g0152871	57.143	70	28	1	228	295	82	151	4.57e-22	94.7
Msa1305920	MtrunA17_Chr1g0148681	50.649	77	38	0	218	294	137	213	4.19e-21	92.4
Msa1305920	MtrunA17_Chr3g0134421	44.737	76	38	2	222	295	71	144	2.74e-15	75.1
Msa1305920	MtrunA17_Chr3g0134441	59.259	54	20	1	242	293	69	122	2.44e-14	72.4
Msa1305920	MtrunA17_Chr3g0134401	42.647	68	39	0	228	295	65	132	9.73e-14	70.5

Showing 1 to 10 of 14 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1305920	AT1G44110.1	50.000	302	94	8	1	295	1	252	1.07e-70	226
Msa1305920	AT1G77390.1	74.667	75	19	0	220	294	161	235	3.06e-34	129
Msa1305920	AT1G80370.1	63.158	76	28	0	220	295	180	255	5.57e-27	109
Msa1305920	AT5G25380.2	56.579	76	33	0	220	295	156	231	2.05e-25	105
Msa1305920	AT5G25380.3	56.579	76	33	0	220	295	156	231	2.49e-25	105
Msa1305920	AT5G25380.1	56.579	76	33	0	220	295	156	231	2.49e-25	105
Msa1305920	AT5G25380.4	56.579	76	33	0	220	295	162	237	2.78e-25	105
Msa1305920	AT1G15570.1	61.842	76	29	0	220	295	171	246	3.62e-25	104
Msa1305920	AT5G11300.1	53.947	76	35	0	220	295	155	230	1.31e-24	103
Msa1305920	AT1G47210.1	56.000	75	31	1	223	295	88	162	1.59e-24	98.2

Showing 1 to 10 of 17 entries

Previous1 2Next

Find 62 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCCATACTACTCGAAAC+CGG	0.496469	8_4:-333021	None:intergenic
AAATGATGAAGTAGTAGTAA+TGG	0.564314	8_4:-332938	None:intergenic
AAGAAAGAAAGAAAAGAGAG+TGG	0.523885	8_4:-332336	None:intergenic
AAGGCCTTCAACAGACTTCA+TGG	0.391707	8_4:+333969	Msa1305920:CDS
AAGGTAGTAGCAGCAACCAA+TGG	0.611035	8_4:-332991	None:intergenic
AATCAATATAGCACGCATGC+TGG	0.468536	8_4:-334016	None:intergenic
AATTAGAATCAGAAATGTTG+AGG	0.628229	8_4:-333191	None:intergenic
ACTCGAAACCGGAACATTGA+AGG	0.503350	8_4:-333010	None:intergenic
ACTGTCAAATACAATGTATC+GGG	0.535115	8_4:-334262	None:intergenic
AGGTCGCTTCTTGGCAGAGG+CGG	0.640133	8_4:-332596	None:intergenic

Showing 1 to 10 of 62 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAGAAAGAAAGAAAAGAGAG+TGG	-	chr8_4:332339-332358	None:intergenic	30.0%
GATTTAACATTCGACAAAGT+AGG	-	chr8_4:332892-332911	None:intergenic	30.0%
GTAACAAAATGTAACCTGAT+GGG	-	chr8_4:333218-333237	None:intergenic	30.0%
AGTAACAAAATGTAACCTGA+TGG	-	chr8_4:333219-333238	None:intergenic	30.0%
ATGCACCAGTAAAATCAAAA+GGG	-	chr8_4:333284-333303	None:intergenic	30.0%
AATGCACCAGTAAAATCAAA+AGG	-	chr8_4:333285-333304	None:intergenic	30.0%
AAACTCAAAATCAATGCCTT+TGG	-	chr8_4:333539-333558	None:intergenic	30.0%
AATTAGTCATGTGGTCAATT+TGG	+	chr8_4:334113-334132	Msa1305920:intron	30.0%
ACTGTCAAATACAATGTATC+GGG	-	chr8_4:334265-334284	None:intergenic	30.0%
GGTTACACTACTACAAAATT+GGG	-	chr8_4:334463-334482	None:intergenic	30.0%

Showing 1 to 10 of 176 entries

Previous1 2 3 4 5…18Next

Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	332251	335235	332251	ID=Msa1305920;Name=Msa1305920
chr8_4	mRNA	332251	335235	332251	ID=Msa1305920-mRNA-1;Parent=Msa1305920;Name=Msa1305920-mRNA-1;_AED=0.08;_eAED=0.08;_QI=227\|0.8\|0.66\|0.83\|0.8\|0.66\|6\|0\|296
chr8_4	exon	332251	332672	332251	ID=Msa1305920-mRNA-1:exon:49;Parent=Msa1305920-mRNA-1
chr8_4	exon	332808	333222	332808	ID=Msa1305920-mRNA-1:exon:50;Parent=Msa1305920-mRNA-1
chr8_4	exon	333338	333474	333338	ID=Msa1305920-mRNA-1:exon:51;Parent=Msa1305920-mRNA-1
chr8_4	exon	333961	334053	333961	ID=Msa1305920-mRNA-1:exon:52;Parent=Msa1305920-mRNA-1
chr8_4	exon	334238	334282	334238	ID=Msa1305920-mRNA-1:exon:53;Parent=Msa1305920-mRNA-1
chr8_4	exon	335230	335235	335230	ID=Msa1305920-mRNA-1:exon:54;Parent=Msa1305920-mRNA-1
chr8_4	five_prime_UTR	332251	332477	332251	ID=Msa1305920-mRNA-1:five_prime_utr;Parent=Msa1305920-mRNA-1
chr8_4	CDS	332478	332672	332478	ID=Msa1305920-mRNA-1:cds;Parent=Msa1305920-mRNA-1
chr8_4	CDS	332808	333222	332808	ID=Msa1305920-mRNA-1:cds;Parent=Msa1305920-mRNA-1
chr8_4	CDS	333338	333474	333338	ID=Msa1305920-mRNA-1:cds;Parent=Msa1305920-mRNA-1
chr8_4	CDS	333961	334053	333961	ID=Msa1305920-mRNA-1:cds;Parent=Msa1305920-mRNA-1
chr8_4	CDS	334238	334282	334238	ID=Msa1305920-mRNA-1:cds;Parent=Msa1305920-mRNA-1
chr8_4	CDS	335230	335235	335230	ID=Msa1305920-mRNA-1:cds;Parent=Msa1305920-mRNA-1

Gene Sequence

>Msa1305920

ATGTCAAATCATAATAATCGTCGTTCATCGTTTTCTTCTTCAACAACGTCGTCAATGGCAAAACGACACCCACCTGTTACCGCTTTAACATCAGAGAACAACGCCGGAAAAGTCTTAGCCGCCTCTGCCAAGAAGCGACCTCCGCTCACTAACCTCACCAATCAAAATTCTTCCCGCAACAATTCATCCACTTTGGTAACTAAAGTTGCAAAGACAAAGAAAGAACCTTCACCATGCAATTCTTCTTCAAGCTCTGTGATTTCTGTTAACAAAAAACCTACTTTGTCGAATGTTAAATCCGCTACTGTGAATGTTTTTCCCAAGGCCATTACTACTACTTCATCATTTTCTGGAAGGAATGAAGTTGTTCCTCCTCCTCCATTGGTTGCTGCTACTACCTTCAATGTTCCGGTTTCGAGTAGTATGGATTTATCATCTCCTGGTAAATCCGATGGAATGTCGGTTTCTATGGACGAGACAATGTCGTCGTGTGATTCTTTCAAGAGTCCTGATATTGAATATGTGGATAACAGTGATGTTCCAGCTGTTGATTCTATTGAGAGGAAGACTTTTTGTAGCCTCAACATTTCTGATTCTAATTACCCATCAGGTAACATTTGTAGTAGAGACATTCTTGTTGAGTTGGAAAAGGGAGAGAAAATTGTTAATATTGATAATGATTACATGGATCCTCAACTCTGTGCTACCTTTGCCTGTGATATCTACAAGCATCTACGTGCATCTGAGACAAAGAAAAGGCCTTCAACAGACTTCATGGAGAAAATTCAGAAGGACATTAATCCCAGCATGCGTGCTATATTGATTGATTGGCTAGTGGAGGTGGCTGAAGAGTATAGACTTGTACCCGATACATTGTATTTGACAGAATAA

Protein sequence

>Msa1305920

MSNHNNRRSSFSSSTTSSMAKRHPPVTALTSENNAGKVLAASAKKRPPLTNLTNQNSSRNNSSTLVTKVAKTKKEPSPCNSSSSSVISVNKKPTLSNVKSATVNVFPKAITTTSSFSGRNEVVPPPPLVAATTFNVPVSSSMDLSSPGKSDGMSVSMDETMSSCDSFKSPDIEYVDNSDVPAVDSIERKTFCSLNISDSNYPSGNICSRDILVELEKGEKIVNIDNDYMDPQLCATFACDIYKHLRASETKKRPSTDFMEKIQKDINPSMRAILIDWLVEVAEEYRLVPDTLYLTE*