Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0121870 | XP_013468212.1 | 94.334 | 353 | 16 | 2 | 1 | 352 | 1 | 350 | 0.0 | 591 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0121870 | sp|Q9S752|LOFG2_ARATH | 70.980 | 255 | 63 | 5 | 96 | 344 | 120 | 369 | 5.74e-122 | 359 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0121870 | A0A072VJM2 | 94.334 | 353 | 16 | 2 | 1 | 352 | 1 | 350 | 0.0 | 591 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020390 | Msa0121870 | 0.806641 | 7.451468e-50 | -8.615850e-47 |
| Msa0071250 | Msa0121870 | 0.810197 | 1.299045e-50 | -8.615850e-47 |
| Msa0090550 | Msa0121870 | 0.804957 | 1.683459e-49 | -8.615850e-47 |
| Msa0093010 | Msa0121870 | 0.807200 | 5.677726e-50 | -8.615850e-47 |
| Msa0096980 | Msa0121870 | 0.803351 | 3.633318e-49 | -8.615850e-47 |
| Msa0121870 | Msa0145010 | 0.807585 | 4.705144e-50 | -8.615850e-47 |
| Msa0121870 | Msa0183870 | 0.810162 | 1.321984e-50 | -8.615850e-47 |
| Msa0121870 | Msa0190120 | 0.807726 | 4.390266e-50 | -8.615850e-47 |
| Msa0121870 | Msa0204960 | 0.805182 | 1.510216e-49 | -8.615850e-47 |
| Msa0121870 | Msa0209350 | 0.800216 | 1.599178e-48 | -8.615850e-47 |
| Msa0121870 | Msa0244980 | 0.800719 | 1.263309e-48 | -8.615850e-47 |
| Msa0121870 | Msa0257490 | 0.825760 | 3.931154e-54 | -8.615850e-47 |
| Msa0121870 | Msa0261550 | 0.836273 | 1.030540e-56 | -8.615850e-47 |
| Msa0121870 | Msa0269470 | 0.806507 | 7.954322e-50 | -8.615850e-47 |
| Msa0121870 | Msa0271890 | 0.820818 | 5.609226e-53 | -8.615850e-47 |
| Msa0121870 | Msa0281530 | 0.824555 | 7.575121e-54 | -8.615850e-47 |
| Msa0121870 | Msa0296790 | 0.808144 | 3.577166e-50 | -8.615850e-47 |
| Msa0121870 | Msa0310860 | 0.820951 | 5.229716e-53 | -8.615850e-47 |
| Msa0121870 | Msa0320590 | 0.804375 | 2.226625e-49 | -8.615850e-47 |
| Msa0121870 | Msa0321690 | 0.803125 | 4.046091e-49 | -8.615850e-47 |
| Msa0121870 | Msa0343850 | 0.837448 | 5.168509e-57 | -8.615850e-47 |
| Msa0121870 | Msa0358860 | 0.813798 | 2.132687e-51 | -8.615850e-47 |
| Msa0121870 | Msa0361490 | 0.802332 | 5.899329e-49 | -8.615850e-47 |
| Msa0121870 | Msa0385500 | 0.817487 | 3.214743e-52 | -8.615850e-47 |
| Msa0121870 | Msa0466350 | 0.814574 | 1.437550e-51 | -8.615850e-47 |
| Msa0121870 | Msa0496450 | 0.812147 | 4.906241e-51 | -8.615850e-47 |
| Msa0121870 | Msa0531530 | 0.816210 | 6.219166e-52 | -8.615850e-47 |
| Msa0121870 | Msa0534900 | 0.805275 | 1.444075e-49 | -8.615850e-47 |
| Msa0121870 | Msa0542290 | 0.820208 | 7.745301e-53 | -8.615850e-47 |
| Msa0121870 | Msa0542560 | 0.838608 | 2.599120e-57 | -8.615850e-47 |
| Msa0121870 | Msa0547160 | 0.803544 | 3.314607e-49 | -8.615850e-47 |
| Msa0121870 | Msa0588260 | 0.845973 | 2.906395e-59 | -8.615850e-47 |
| Msa0121870 | Msa0600080 | 0.805425 | 1.343181e-49 | -8.615850e-47 |
| Msa0121870 | Msa0604290 | 0.829379 | 5.320722e-55 | -8.615850e-47 |
| Msa0121870 | Msa0665280 | 0.801307 | 9.578559e-49 | -8.615850e-47 |
| Msa0121870 | Msa0800370 | 0.811157 | 8.056167e-51 | -8.615850e-47 |
| Msa0121870 | Msa0933380 | 0.842260 | 2.882148e-58 | -8.615850e-47 |
| Msa0121870 | Msa0971160 | 0.824197 | 9.194086e-54 | -8.615850e-47 |
| Msa0121870 | Msa1029050 | 0.801382 | 9.243288e-49 | -8.615850e-47 |
| Msa0121870 | Msa1158640 | -0.823559 | 1.297794e-53 | -8.615850e-47 |
| Msa0121870 | Msa1254730 | 0.809416 | 1.912772e-50 | -8.615850e-47 |
| Msa0121870 | Msa1256470 | 0.801026 | 1.093333e-48 | -8.615850e-47 |
| Msa0121870 | Msa1294820 | 0.805077 | 1.588427e-49 | -8.615850e-47 |
| Msa0121870 | Msa1336560 | 0.807554 | 4.776758e-50 | -8.615850e-47 |
| Msa0121870 | Msa1365800 | 0.808163 | 3.544594e-50 | -8.615850e-47 |
| Msa0121870 | Msa1368530 | 0.813530 | 2.443575e-51 | -8.615850e-47 |
| Msa0121870 | Msa1448620 | 0.802502 | 5.441000e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0121870 | MtrunA17_Chr1g0181351 | 94.334 | 353 | 16 | 2 | 1 | 352 | 1 | 350 | 0.0 | 591 |
| Msa0121870 | MtrunA17_Chr7g0264071 | 61.644 | 365 | 84 | 7 | 1 | 347 | 1 | 327 | 3.00e-136 | 390 |
| Msa0121870 | MtrunA17_Chr2g0287731 | 49.807 | 259 | 122 | 4 | 93 | 344 | 124 | 381 | 5.07e-89 | 272 |
| Msa0121870 | MtrunA17_Chr4g0065661 | 44.482 | 299 | 157 | 6 | 52 | 345 | 60 | 354 | 1.43e-84 | 260 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0121870 | AT3G09770.1 | 70.980 | 255 | 63 | 5 | 96 | 344 | 120 | 369 | 5.84e-123 | 359 |
| Msa0121870 | AT3G53410.1 | 52.870 | 331 | 108 | 9 | 18 | 344 | 7 | 293 | 9.24e-109 | 320 |
| Msa0121870 | AT5G03200.1 | 55.063 | 316 | 113 | 8 | 41 | 342 | 33 | 333 | 8.27e-108 | 319 |
| Msa0121870 | AT3G09770.2 | 67.411 | 224 | 62 | 5 | 96 | 313 | 120 | 338 | 5.45e-98 | 294 |
| Msa0121870 | AT5G19080.1 | 47.244 | 254 | 122 | 3 | 96 | 344 | 125 | 371 | 1.91e-78 | 245 |
| Msa0121870 | AT3G06140.1 | 47.244 | 254 | 123 | 4 | 99 | 349 | 112 | 357 | 3.90e-78 | 244 |
Find 129 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGTTTGATGCTACTGTTTC+TGG | 0.165501 | 1_3:+48063304 | Msa0121870:CDS |
| AATGAGTTTATAGAATTAAA+TGG | 0.224474 | 1_3:-48062756 | None:intergenic |
| TCTTTCGAAACTGAATAAAA+AGG | 0.253739 | 1_3:-48062833 | None:intergenic |
| GAAGATGATGGAAGGTATAA+TGG | 0.260539 | 1_3:-48062649 | None:intergenic |
| TTTCACATCTAATTTCTAAA+TGG | 0.271283 | 1_3:+48066415 | Msa0121870:three_prime_UTR |
| TGCTGGAAATTTATAGTAAC+TGG | 0.271287 | 1_3:-48064792 | None:intergenic |
| TGCTGACACCTCCAAGATAT+TGG | 0.275619 | 1_3:-48063148 | None:intergenic |
| CAGCTGGCTGTCTAAACTTC+TGG | 0.307730 | 1_3:-48064824 | None:intergenic |
| AGCATTAATTATATAACATT+TGG | 0.308522 | 1_3:-48066246 | None:intergenic |
| CACTATCTTCTTCACTCTTC+AGG | 0.317637 | 1_3:-48066196 | None:intergenic |
| ATAGAATTAAATGGAAATAA+TGG | 0.331304 | 1_3:-48062747 | None:intergenic |
| TATATTATCATGGGTAATAT+AGG | 0.334544 | 1_3:+48062890 | Msa0121870:exon |
| TAAAGGAGAATTCCGGTTAA+AGG | 0.352674 | 1_3:+48065034 | Msa0121870:CDS |
| ACAACCAGTAGAAAGGCTTT+TGG | 0.367841 | 1_3:+48066147 | Msa0121870:CDS |
| TTCTTGTGATTAATGTTAGA+TGG | 0.368029 | 1_3:-48062683 | None:intergenic |
| AACTGTTCCTATGCCTTTGC+CGG | 0.369591 | 1_3:+48063090 | Msa0121870:CDS |
| GTAAATTTCTTATATTATCA+TGG | 0.378076 | 1_3:+48062880 | Msa0121870:exon |
| ACTTCTGGCCAAGACCTTGC+TGG | 0.379461 | 1_3:-48064809 | None:intergenic |
| GCATCCGGTGGCGGCGGTGG+CGG | 0.380871 | 1_3:-48062989 | None:intergenic |
| AGGGTGCGTAAGTGAGTTAA+AGG | 0.387512 | 1_3:-48062791 | None:intergenic |
| TCAAATGAAACGCCAACATC+TGG | 0.387967 | 1_3:+48064960 | Msa0121870:CDS |
| GGCGGTGGCGGAGGAGTTAC+CGG | 0.391281 | 1_3:-48062977 | None:intergenic |
| CACTCTTCAGGCTCAGGCTC+AGG | 0.391727 | 1_3:-48066184 | None:intergenic |
| ATAAATTTCCAGCAAGGTCT+TGG | 0.391916 | 1_3:+48064801 | Msa0121870:CDS |
| TCAGCAACAGGCGCCGGCGC+CGG | 0.395045 | 1_3:+48063165 | Msa0121870:CDS |
| AGAAGGATAAAGGAGAATTC+CGG | 0.402168 | 1_3:+48065027 | Msa0121870:CDS |
| TATGAGCTGCAGGAGATATA+TGG | 0.402714 | 1_3:+48065092 | Msa0121870:CDS |
| TCCGGTGGCGGCGGTGGCGG+AGG | 0.403742 | 1_3:-48062986 | None:intergenic |
| GCAGCATCCGGTGGCGGCGG+TGG | 0.412591 | 1_3:-48062992 | None:intergenic |
| ATCTTGGAGGTGTCAGCAAC+AGG | 0.416141 | 1_3:+48063153 | Msa0121870:CDS |
| GGCGGCGGAGGATAGTAATT+AGG | 0.416420 | 1_3:-48063064 | None:intergenic |
| GAACCTGATGAGGAAAATCC+TGG | 0.417660 | 1_3:+48063262 | Msa0121870:CDS |
| GCAGTGTTTGAGAAGGATAA+AGG | 0.421719 | 1_3:+48065017 | Msa0121870:CDS |
| TCTGCTTAGCTACCTTTAAC+CGG | 0.430591 | 1_3:-48065046 | None:intergenic |
| CTTCTTCACTCTTCAGGCTC+AGG | 0.431420 | 1_3:-48066190 | None:intergenic |
| GCTGACACCTCCAAGATATT+GGG | 0.436037 | 1_3:-48063147 | None:intergenic |
| TCCTCCGCCACCGCCGCCAC+CGG | 0.438435 | 1_3:+48062985 | Msa0121870:CDS |
| AAGATGATGGAAGGTATAAT+GGG | 0.438833 | 1_3:-48062648 | None:intergenic |
| TCTACTGGTTGTCTGCAGAT+TGG | 0.441982 | 1_3:-48066136 | None:intergenic |
| GCCGGCGCCGGCGCCGTATG+TGG | 0.447246 | 1_3:+48063177 | Msa0121870:CDS |
| GGAAAATACCATGTGGCGAC+AGG | 0.449920 | 1_3:-48065210 | None:intergenic |
| TCCACATACGGCGCCGGCGC+CGG | 0.450762 | 1_3:-48063178 | None:intergenic |
| TTTAGACAGCCAGCTGGAAC+TGG | 0.454606 | 1_3:+48064831 | Msa0121870:CDS |
| AGACACGGTGGCGGTGGAAG+TGG | 0.456233 | 1_3:+48062938 | Msa0121870:CDS |
| ATCTCCAAAAGCCTTTCTAC+TGG | 0.456468 | 1_3:-48066151 | None:intergenic |
| CGTCGGAGACACGGTGGCGG+TGG | 0.459369 | 1_3:+48062932 | Msa0121870:CDS |
| GCATCTGCTTTAACTGCTAC+AGG | 0.460079 | 1_3:-48064915 | None:intergenic |
| AAATAATGGAATATTAAGAA+TGG | 0.469153 | 1_3:-48062733 | None:intergenic |
| AGGCATTTGCTTATAAAGTC+AGG | 0.472902 | 1_3:-48066372 | None:intergenic |
| CTGCAGGAGATATATGGTAT+TGG | 0.477865 | 1_3:+48065098 | Msa0121870:CDS |
| AATAATGGAATATTAAGAAT+GGG | 0.481153 | 1_3:-48062732 | None:intergenic |
| TAATTACTATCCTCCGCCGC+CGG | 0.484178 | 1_3:+48063066 | Msa0121870:CDS |
| AGGCGATTGACCCAATATCT+TGG | 0.484883 | 1_3:+48063137 | Msa0121870:CDS |
| AAGCAGATATTGTGGGTGAA+TGG | 0.486141 | 1_3:+48065062 | Msa0121870:CDS |
| AAAGGCATAGGAACAGTTCC+CGG | 0.486589 | 1_3:-48063085 | None:intergenic |
| CCGCCGCCACCGGATGCTGC+TGG | 0.494202 | 1_3:+48062995 | Msa0121870:CDS |
| TGATACGGAGGAGCAGCAGC+AGG | 0.496030 | 1_3:-48063034 | None:intergenic |
| CCAGCAGCATCCGGTGGCGG+CGG | 0.497527 | 1_3:-48062995 | None:intergenic |
| TCAAACAAGCATGGAGGAGG+AGG | 0.498681 | 1_3:-48066392 | None:intergenic |
| GATGAAGAAGAAGAAGATGA+TGG | 0.500016 | 1_3:-48062661 | None:intergenic |
| TAAATTTCTTATATTATCAT+GGG | 0.510661 | 1_3:+48062881 | Msa0121870:exon |
| ATATAACATTTGGACTGTAC+AGG | 0.518468 | 1_3:-48066236 | None:intergenic |
| TTACCAGCAGCATCCGGTGG+CGG | 0.526284 | 1_3:-48062998 | None:intergenic |
| GGTAGCTAAGCAGATATTGT+GGG | 0.526889 | 1_3:+48065055 | Msa0121870:CDS |
| TGGAATGAGGTATGAGCTGC+AGG | 0.532509 | 1_3:+48065082 | Msa0121870:CDS |
| CAGCAGCAGGGTAAACGAAT+CGG | 0.533425 | 1_3:-48063021 | None:intergenic |
| ATATTGTGCTTCTTGCTAAG+TGG | 0.533556 | 1_3:+48062609 | Msa0121870:five_prime_UTR |
| GTATGATCACCATCATCGTC+AGG | 0.534340 | 1_3:+48063117 | Msa0121870:CDS |
| GGAATCTGAGTTATTGAAAG+TGG | 0.534885 | 1_3:+48064875 | Msa0121870:CDS |
| ATAGGAACAGTTCCCGGCGG+CGG | 0.535468 | 1_3:-48063079 | None:intergenic |
| TCTGCAGACAACCAGTAGAA+AGG | 0.542846 | 1_3:+48066140 | Msa0121870:CDS |
| TGATCATACGGCGCCGGCAA+AGG | 0.551424 | 1_3:-48063103 | None:intergenic |
| AGGTAGCTAAGCAGATATTG+TGG | 0.552818 | 1_3:+48065054 | Msa0121870:CDS |
| AATCGGTTACCAGCAGCATC+CGG | 0.554933 | 1_3:-48063004 | None:intergenic |
| GGAACAGTTCCCGGCGGCGG+AGG | 0.555005 | 1_3:-48063076 | None:intergenic |
| CAGTTGAGAGTGACTTGGAT+GGG | 0.558719 | 1_3:+48065126 | Msa0121870:CDS |
| AATTACTATCCTCCGCCGCC+GGG | 0.559380 | 1_3:+48063067 | Msa0121870:CDS |
| TACGGCGCCGGCAAAGGCAT+AGG | 0.564235 | 1_3:-48063097 | None:intergenic |
| TGATGCTCCACATACGGCGC+CGG | 0.566075 | 1_3:-48063184 | None:intergenic |
| TAATTAGGATAATTCTGATA+CGG | 0.568187 | 1_3:-48063049 | None:intergenic |
| GTTATTGAAAGTGGCCGACA+TGG | 0.568973 | 1_3:+48064884 | Msa0121870:CDS |
| AAATCAAACAAGCATGGAGG+AGG | 0.569860 | 1_3:-48066395 | None:intergenic |
| GCATCTTCAAGCGACGTGGA+CGG | 0.576209 | 1_3:+48064936 | Msa0121870:CDS |
| GATGTGAAATCAAACAAGCA+TGG | 0.577577 | 1_3:-48066401 | None:intergenic |
| TTCTTTGCAAAAGAAGGCGA+CGG | 0.577706 | 1_3:+48064732 | Msa0121870:CDS |
| AACTTCAGTTGAGAGTGACT+TGG | 0.579503 | 1_3:+48065121 | Msa0121870:CDS |
| TCTAACAATCGTCGGAGACA+CGG | 0.580257 | 1_3:+48062923 | Msa0121870:CDS |
| GAGGTGTCAGCAACAGGCGC+CGG | 0.580449 | 1_3:+48063159 | Msa0121870:CDS |
| GACTTCTGATGCTCCACATA+CGG | 0.580948 | 1_3:-48063190 | None:intergenic |
| CGATTGACCCAATATCTTGG+AGG | 0.584212 | 1_3:+48063140 | Msa0121870:CDS |
| TGTCCTTCCCTGTCGCCACA+TGG | 0.586258 | 1_3:+48065202 | Msa0121870:CDS |
| AAGAAGAAGAAGATGATGGA+AGG | 0.590517 | 1_3:-48062657 | None:intergenic |
| GGTCAATCGCCTGACGATGA+TGG | 0.590554 | 1_3:-48063126 | None:intergenic |
| TCAGTTGAGAGTGACTTGGA+TGG | 0.593199 | 1_3:+48065125 | Msa0121870:CDS |
| GAATGATGTAAATATCAAGA+AGG | 0.594223 | 1_3:+48063225 | Msa0121870:CDS |
| TTGTGCTTCTTGCTAAGTGG+AGG | 0.597416 | 1_3:+48062612 | Msa0121870:five_prime_UTR |
| TGATGGTGATCATACGGCGC+CGG | 0.599260 | 1_3:-48063109 | None:intergenic |
| AACCTGATGAGGAAAATCCT+GGG | 0.603264 | 1_3:+48063263 | Msa0121870:CDS |
| GTTACTATAAATTTCCAGCA+AGG | 0.603855 | 1_3:+48064795 | Msa0121870:CDS |
| TGACGATGATGGTGATCATA+CGG | 0.604221 | 1_3:-48063115 | None:intergenic |
| GACTTGGATGGGAATGACCC+TGG | 0.605458 | 1_3:+48065137 | Msa0121870:CDS |
| AAATTGATACCAGTTCCAGC+TGG | 0.607603 | 1_3:-48064840 | None:intergenic |
| AACTCAAGCAGTGTTTGAGA+AGG | 0.610246 | 1_3:+48065010 | Msa0121870:CDS |
| TTAGGATAATTCTGATACGG+AGG | 0.616665 | 1_3:-48063046 | None:intergenic |
| TTGATGCTACTGTTTCTGGA+AGG | 0.616868 | 1_3:+48063308 | Msa0121870:CDS |
| CAGAAGTTTAGACAGCCAGC+TGG | 0.627481 | 1_3:+48064825 | Msa0121870:CDS |
| TGGCCGACGAGTTCATCCTC+CGG | 0.629583 | 1_3:+48062958 | Msa0121870:CDS |
| GAAAATACCATGTGGCGACA+GGG | 0.631207 | 1_3:-48065209 | None:intergenic |
| ATACCATGTGGCGACAGGGA+AGG | 0.638468 | 1_3:-48065205 | None:intergenic |
| TGATGAGAGATGAGATGTGA+AGG | 0.645990 | 1_3:-48062586 | None:intergenic |
| CGGTTACCAGCAGCATCCGG+TGG | 0.647735 | 1_3:-48063001 | None:intergenic |
| TTGTTGCAGTGCATGTGTAG+CGG | 0.649496 | 1_3:+48066076 | Msa0121870:intron |
| CTGCGTCCTTACGTCAACAA+AGG | 0.660443 | 1_3:+48064755 | Msa0121870:CDS |
| ATGGGTAATATAGGAAGTAG+CGG | 0.661139 | 1_3:+48062899 | Msa0121870:CDS |
| GTAGCGGTTCTAACAATCGT+CGG | 0.661392 | 1_3:+48062915 | Msa0121870:CDS |
| ACTGATGATTGAACCTGATG+AGG | 0.661841 | 1_3:+48063252 | Msa0121870:CDS |
| TATTGTGGGTGAATGGAATG+AGG | 0.662749 | 1_3:+48065069 | Msa0121870:CDS |
| AATCGTCGGAGACACGGTGG+CGG | 0.675225 | 1_3:+48062929 | Msa0121870:CDS |
| GATACGGAGGAGCAGCAGCA+GGG | 0.676843 | 1_3:-48063033 | None:intergenic |
| GGAAGGACAGTTGTGTCGCG+AGG | 0.677114 | 1_3:-48065188 | None:intergenic |
| TACAGGATAGATGTCCATGT+CGG | 0.677204 | 1_3:-48064898 | None:intergenic |
| AGATGCATCTTCAAGCGACG+TGG | 0.677563 | 1_3:+48064932 | Msa0121870:CDS |
| GTATGTGGAGCATCAGAAGT+CGG | 0.687630 | 1_3:+48063192 | Msa0121870:CDS |
| AGTGAGTTAAAGGAAAATCG+TGG | 0.689318 | 1_3:-48062781 | None:intergenic |
| TTACCGGAGGATGAACTCGT+CGG | 0.696899 | 1_3:-48062961 | None:intergenic |
| GGTGGCGGAGGAGTTACCGG+AGG | 0.719189 | 1_3:-48062974 | None:intergenic |
| AACAATCGTCGGAGACACGG+TGG | 0.726822 | 1_3:+48062926 | Msa0121870:CDS |
| GTGAAATCAAACAAGCATGG+AGG | 0.727700 | 1_3:-48066398 | None:intergenic |
| GGCATAGGAACAGTTCCCGG+CGG | 0.758019 | 1_3:-48063082 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATAAAATAAAATAAAA+AGG | - | chr1_3:48064139-48064158 | None:intergenic | 0.0% |
| !! | TAAATTTCTTATATTATCAT+GGG | + | chr1_3:48062881-48062900 | Msa0121870:exon | 10.0% |
| !!! | TTTAAATTCTTTTACTTTTT+AGG | + | chr1_3:48064283-48064302 | Msa0121870:intron | 10.0% |
| !!! | TTAAATTCTTTTACTTTTTA+GGG | + | chr1_3:48064284-48064303 | Msa0121870:intron | 10.0% |
| !! | AAGAAAAATTAAATTACAAA+GGG | - | chr1_3:48065240-48065259 | None:intergenic | 10.0% |
| !! | AAAGAAAAATTAAATTACAA+AGG | - | chr1_3:48065241-48065260 | None:intergenic | 10.0% |
| !!! | AATAATGGAATATTAAGAAT+GGG | - | chr1_3:48062735-48062754 | None:intergenic | 15.0% |
| !!! | AAATAATGGAATATTAAGAA+TGG | - | chr1_3:48062736-48062755 | None:intergenic | 15.0% |
| !! | ATAGAATTAAATGGAAATAA+TGG | - | chr1_3:48062750-48062769 | None:intergenic | 15.0% |
| !! | AATGAGTTTATAGAATTAAA+TGG | - | chr1_3:48062759-48062778 | None:intergenic | 15.0% |
| !! | GTAAATTTCTTATATTATCA+TGG | + | chr1_3:48062880-48062899 | Msa0121870:exon | 15.0% |
| !!! | TTAAGCTAAATTTGATTTTT+TGG | + | chr1_3:48063740-48063759 | Msa0121870:intron | 15.0% |
| !!! | TCTGTTTGTTAAATATATTT+TGG | + | chr1_3:48064165-48064184 | Msa0121870:intron | 15.0% |
| !!! | TAAATTCTTTTACTTTTTAG+GGG | + | chr1_3:48064285-48064304 | Msa0121870:intron | 15.0% |
| !!! | ATTACTTAATTTATTTTGCA+TGG | + | chr1_3:48064316-48064335 | Msa0121870:intron | 15.0% |
| !!! | ATTTTTCTTTTATAGATTGT+TGG | + | chr1_3:48065251-48065270 | Msa0121870:intron | 15.0% |
| !!! | TTTATTTCATATTTTGTTGT+AGG | - | chr1_3:48065563-48065582 | None:intergenic | 15.0% |
| !! | TTGATAAACAACTTAATTAA+AGG | - | chr1_3:48065836-48065855 | None:intergenic | 15.0% |
| !! | AGCATTAATTATATAACATT+TGG | - | chr1_3:48066249-48066268 | None:intergenic | 15.0% |
| !! | ATTAGAAAAAACATGAAATT+AGG | - | chr1_3:48066281-48066300 | None:intergenic | 15.0% |
| !! | TCCAAAAAAAATATAGAAAT+TGG | + | chr1_3:48066303-48066322 | Msa0121870:three_prime_UTR | 15.0% |
| !!! | TCCAATTTCTATATTTTTTT+TGG | - | chr1_3:48066307-48066326 | None:intergenic | 15.0% |
| !! | TATATTATCATGGGTAATAT+AGG | + | chr1_3:48062890-48062909 | Msa0121870:exon | 20.0% |
| !! | TAATTAGGATAATTCTGATA+CGG | - | chr1_3:48063052-48063071 | None:intergenic | 20.0% |
| !! | TATATGATAGAACATTATAG+CGG | + | chr1_3:48063523-48063542 | Msa0121870:intron | 20.0% |
| !! | TTTGGATTCAAATAAGTAAA+TGG | + | chr1_3:48063758-48063777 | Msa0121870:intron | 20.0% |
| !! | TTGGATTCAAATAAGTAAAT+GGG | + | chr1_3:48063759-48063778 | Msa0121870:intron | 20.0% |
| !! | TTGGTTAACTATTTACTTAT+AGG | + | chr1_3:48063855-48063874 | Msa0121870:intron | 20.0% |
| !!! | TTAATTATTTTAGCTAGCTT+AGG | + | chr1_3:48063880-48063899 | Msa0121870:intron | 20.0% |
| !!! | AAATTCTTTTACTTTTTAGG+GGG | + | chr1_3:48064286-48064305 | Msa0121870:intron | 20.0% |
| !!! | TATCAATTTTTCAATGTTTG+AGG | + | chr1_3:48064854-48064873 | Msa0121870:CDS | 20.0% |
| !! | AATTAAATTACAAAGGGAAA+CGG | - | chr1_3:48065234-48065253 | None:intergenic | 20.0% |
| !!! | GAAATAAAGTCAAATTGTTT+TGG | + | chr1_3:48065575-48065594 | Msa0121870:intron | 20.0% |
| !!! | ATTAAGTTGTTTATCAAAAC+AGG | + | chr1_3:48065839-48065858 | Msa0121870:intron | 20.0% |
| !!! | TTAAGTTGTTTATCAAAACA+GGG | + | chr1_3:48065840-48065859 | Msa0121870:intron | 20.0% |
| !! | TTTCACATCTAATTTCTAAA+TGG | + | chr1_3:48066415-48066434 | Msa0121870:three_prime_UTR | 20.0% |
| ! | TTCTTGTGATTAATGTTAGA+TGG | - | chr1_3:48062686-48062705 | None:intergenic | 25.0% |
| !!! | TGAATAAAAAGGTTTTGTTG+CGG | - | chr1_3:48062825-48062844 | None:intergenic | 25.0% |
| ! | TCTTTCGAAACTGAATAAAA+AGG | - | chr1_3:48062836-48062855 | None:intergenic | 25.0% |
| ! | GAAAGAAAAAAAAAACGTAG+TGG | + | chr1_3:48062850-48062869 | Msa0121870:five_prime_UTR | 25.0% |
| ! | GAATGATGTAAATATCAAGA+AGG | + | chr1_3:48063225-48063244 | Msa0121870:CDS | 25.0% |
| ! | AAACTATTCTACAATTGCAA+TGG | - | chr1_3:48063837-48063856 | None:intergenic | 25.0% |
| ! | ATTGCAATTGTAGAATAGTT+TGG | + | chr1_3:48063836-48063855 | Msa0121870:intron | 25.0% |
| !! | TCTAAAATGAACTTGCATTA+AGG | - | chr1_3:48064597-48064616 | None:intergenic | 25.0% |
| ! | ATAAAACAACTATAGCACAA+TGG | - | chr1_3:48064657-48064676 | None:intergenic | 25.0% |
| !! | TTCTTTTGCAAAGAAAAGTA+CGG | - | chr1_3:48064727-48064746 | None:intergenic | 25.0% |
| !!! | TTTGTTTTATTTCCAGATGT+TGG | - | chr1_3:48064975-48064994 | None:intergenic | 25.0% |
| ! | TGTTAAATGATATCCATGTT+TGG | + | chr1_3:48065342-48065361 | Msa0121870:intron | 25.0% |
| ! | TTTCAATCATTGACGAAATT+TGG | - | chr1_3:48065373-48065392 | None:intergenic | 25.0% |
| !!! | AAAGTCAAATTGTTTTGGAT+TGG | + | chr1_3:48065580-48065599 | Msa0121870:intron | 25.0% |
| ! | ATGAAAACAACTTATAGCTT+AGG | - | chr1_3:48065866-48065885 | None:intergenic | 25.0% |
| !!! | GCATTACATTTTGTTTAACA+TGG | + | chr1_3:48066333-48066352 | Msa0121870:three_prime_UTR | 25.0% |
| !!! | ACATTTTGTTTAACATGGAT+CGG | + | chr1_3:48066338-48066357 | Msa0121870:three_prime_UTR | 25.0% |
| !! | AAGATGATGGAAGGTATAAT+GGG | - | chr1_3:48062651-48062670 | None:intergenic | 30.0% |
| TGTATACGTTCATGTGAAAA+TGG | + | chr1_3:48063436-48063455 | Msa0121870:intron | 30.0% | |
| GTATACGTTCATGTGAAAAT+GGG | + | chr1_3:48063437-48063456 | Msa0121870:intron | 30.0% | |
| ! | TGGGTTGAACAATAAATTTG+TGG | + | chr1_3:48063456-48063475 | Msa0121870:intron | 30.0% |
| ATGTTGCATCATTTGATTAG+AGG | + | chr1_3:48063482-48063501 | Msa0121870:intron | 30.0% | |
| GTAATTATGTGACTTATGCA+TGG | + | chr1_3:48063629-48063648 | Msa0121870:intron | 30.0% | |
| ! | TGTATTATCTATGTGTTGCT+AGG | + | chr1_3:48063987-48064006 | Msa0121870:intron | 30.0% |
| ! | GTATTATCTATGTGTTGCTA+GGG | + | chr1_3:48063988-48064007 | Msa0121870:intron | 30.0% |
| ! | TTGTTTTCCTTTGACGATAT+CGG | + | chr1_3:48064012-48064031 | Msa0121870:intron | 30.0% |
| !! | TTATTTTGCATGGAGTGTTA+TGG | + | chr1_3:48064326-48064345 | Msa0121870:intron | 30.0% |
| GAACAATCAGCTATTACATT+TGG | - | chr1_3:48064355-48064374 | None:intergenic | 30.0% | |
| ! | AAGTCCAAAAGTGTGAAAAA+CGG | - | chr1_3:48064377-48064396 | None:intergenic | 30.0% |
| AATGCAAAATAGTCAAACTC+TGG | + | chr1_3:48064468-48064487 | Msa0121870:intron | 30.0% | |
| ! | TTGTATTGATGACTTTCCTT+AGG | + | chr1_3:48064508-48064527 | Msa0121870:intron | 30.0% |
| GATGCTGTTATGAAGATAAA+GGG | - | chr1_3:48064703-48064722 | None:intergenic | 30.0% | |
| TGATGCTGTTATGAAGATAA+AGG | - | chr1_3:48064704-48064723 | None:intergenic | 30.0% | |
| ! | GTACTTTTCTTTGCAAAAGA+AGG | + | chr1_3:48064726-48064745 | Msa0121870:CDS | 30.0% |
| ! | TATTTTCCTTTGTTGACGTA+AGG | - | chr1_3:48064764-48064783 | None:intergenic | 30.0% |
| TGCTGGAAATTTATAGTAAC+TGG | - | chr1_3:48064795-48064814 | None:intergenic | 30.0% | |
| GTTACTATAAATTTCCAGCA+AGG | + | chr1_3:48064795-48064814 | Msa0121870:CDS | 30.0% | |
| TACTAGTAATGCTAAATCAC+TGG | + | chr1_3:48065315-48065334 | Msa0121870:intron | 30.0% | |
| ACTAGTAATGCTAAATCACT+GGG | + | chr1_3:48065316-48065335 | Msa0121870:intron | 30.0% | |
| ! | TCGGTGACAAAATAACTTTT+GGG | - | chr1_3:48065422-48065441 | None:intergenic | 30.0% |
| ! | ATCGGTGACAAAATAACTTT+TGG | - | chr1_3:48065423-48065442 | None:intergenic | 30.0% |
| AAAGCTATTTATGTCCTGTT+TGG | + | chr1_3:48065488-48065507 | Msa0121870:intron | 30.0% | |
| AAACACTTGTGAAACTGTTT+GGG | + | chr1_3:48065628-48065647 | Msa0121870:intron | 30.0% | |
| AAAGCTTATAAACATGCCAT+GGG | - | chr1_3:48065671-48065690 | None:intergenic | 30.0% | |
| AAAAGCTTATAAACATGCCA+TGG | - | chr1_3:48065672-48065691 | None:intergenic | 30.0% | |
| !! | AGTTGTTTTCATAAGCTATC+TGG | - | chr1_3:48065717-48065736 | None:intergenic | 30.0% |
| AAGACTCTAATGACTAATGA+AGG | - | chr1_3:48066029-48066048 | None:intergenic | 30.0% | |
| ATATAACATTTGGACTGTAC+AGG | - | chr1_3:48066239-48066258 | None:intergenic | 30.0% | |
| ATATTGTGCTTCTTGCTAAG+TGG | + | chr1_3:48062609-48062628 | Msa0121870:five_prime_UTR | 35.0% | |
| !! | GAAGATGATGGAAGGTATAA+TGG | - | chr1_3:48062652-48062671 | None:intergenic | 35.0% |
| !! | AAGAAGAAGAAGATGATGGA+AGG | - | chr1_3:48062660-48062679 | None:intergenic | 35.0% |
| GATGAAGAAGAAGAAGATGA+TGG | - | chr1_3:48062664-48062683 | None:intergenic | 35.0% | |
| AGTGAGTTAAAGGAAAATCG+TGG | - | chr1_3:48062784-48062803 | None:intergenic | 35.0% | |
| ! | AAAAAAACGTAGTGGCGTTT+TGG | + | chr1_3:48062858-48062877 | Msa0121870:five_prime_UTR | 35.0% |
| ATGGGTAATATAGGAAGTAG+CGG | + | chr1_3:48062899-48062918 | Msa0121870:CDS | 35.0% | |
| TTAGGATAATTCTGATACGG+AGG | - | chr1_3:48063049-48063068 | None:intergenic | 35.0% | |
| AACGTAACAAGAAAAAACCC+AGG | - | chr1_3:48063283-48063302 | None:intergenic | 35.0% | |
| ! | TGATTAGAGGTACAATGAGT+TGG | + | chr1_3:48063495-48063514 | Msa0121870:intron | 35.0% |
| ! | ATGTGACTTATGCATGGTTT+TGG | + | chr1_3:48063635-48063654 | Msa0121870:intron | 35.0% |
| TTAGGAAGCTGATATGACAA+AGG | + | chr1_3:48063898-48063917 | Msa0121870:intron | 35.0% | |
| ! | TGTTTTCCTTTGACGATATC+GGG | + | chr1_3:48064013-48064032 | Msa0121870:intron | 35.0% |
| TCTCAAAATAGATTCCAGCT+TGG | - | chr1_3:48064225-48064244 | None:intergenic | 35.0% | |
| AACACTCTCAATAACCTCAA+GGG | - | chr1_3:48064254-48064273 | None:intergenic | 35.0% | |
| AAACACTCTCAATAACCTCA+AGG | - | chr1_3:48064255-48064274 | None:intergenic | 35.0% | |
| !! | TGTTCCGTTTTTCACACTTT+TGG | + | chr1_3:48064370-48064389 | Msa0121870:intron | 35.0% |
| ! | GTTTTTCACACTTTTGGACT+TGG | + | chr1_3:48064376-48064395 | Msa0121870:intron | 35.0% |
| ! | ATTGATGACTTTCCTTAGGA+AGG | + | chr1_3:48064512-48064531 | Msa0121870:intron | 35.0% |
| TAAAACACCTAGTTCCTTAG+AGG | + | chr1_3:48064569-48064588 | Msa0121870:intron | 35.0% | |
| ATAAATTTCCAGCAAGGTCT+TGG | + | chr1_3:48064801-48064820 | Msa0121870:CDS | 35.0% | |
| GGAATCTGAGTTATTGAAAG+TGG | + | chr1_3:48064875-48064894 | Msa0121870:CDS | 35.0% | |
| AGAAGGATAAAGGAGAATTC+CGG | + | chr1_3:48065027-48065046 | Msa0121870:CDS | 35.0% | |
| TAAAGGAGAATTCCGGTTAA+AGG | + | chr1_3:48065034-48065053 | Msa0121870:CDS | 35.0% | |
| ! | AGATAACACACTCTTTTCCA+GGG | - | chr1_3:48065157-48065176 | None:intergenic | 35.0% |
| ATCAGTTAGCTGAGATTGAT+CGG | - | chr1_3:48065441-48065460 | None:intergenic | 35.0% | |
| CAAACACTTGTGAAACTGTT+TGG | + | chr1_3:48065627-48065646 | Msa0121870:intron | 35.0% | |
| ! | AAACTGTTTGGGATAGCTTA+TGG | + | chr1_3:48065639-48065658 | Msa0121870:intron | 35.0% |
| AGCATAAGCACTTGTCATAT+AGG | - | chr1_3:48065808-48065827 | None:intergenic | 35.0% | |
| AGACTATTTGGGAGAGTTTA+TGG | - | chr1_3:48065955-48065974 | None:intergenic | 35.0% | |
| TAGCACTTACGAGACTATTT+GGG | - | chr1_3:48065966-48065985 | None:intergenic | 35.0% | |
| TTAGCACTTACGAGACTATT+TGG | - | chr1_3:48065967-48065986 | None:intergenic | 35.0% | |
| TGACTAATGAAGGACATGTT+TGG | - | chr1_3:48066019-48066038 | None:intergenic | 35.0% | |
| AGGCATTTGCTTATAAAGTC+AGG | - | chr1_3:48066375-48066394 | None:intergenic | 35.0% | |
| GATGTGAAATCAAACAAGCA+TGG | - | chr1_3:48066404-48066423 | None:intergenic | 35.0% | |
| TGATGAGAGATGAGATGTGA+AGG | - | chr1_3:48062589-48062608 | None:intergenic | 40.0% | |
| ! | TTTTGTTGCGGTGACTTAGA+GGG | - | chr1_3:48062813-48062832 | None:intergenic | 40.0% |
| ! | TGACGATGATGGTGATCATA+CGG | - | chr1_3:48063118-48063137 | None:intergenic | 40.0% |
| ACTGATGATTGAACCTGATG+AGG | + | chr1_3:48063252-48063271 | Msa0121870:CDS | 40.0% | |
| AACCTGATGAGGAAAATCCT+GGG | + | chr1_3:48063263-48063282 | Msa0121870:CDS | 40.0% | |
| ACGTTTGATGCTACTGTTTC+TGG | + | chr1_3:48063304-48063323 | Msa0121870:CDS | 40.0% | |
| !! | TTGATGCTACTGTTTCTGGA+AGG | + | chr1_3:48063308-48063327 | Msa0121870:CDS | 40.0% |
| ! | AGAGGTACAATGAGTTGGAT+AGG | + | chr1_3:48063500-48063519 | Msa0121870:intron | 40.0% |
| TGCATCGTGTGAAATGTGAA+TGG | + | chr1_3:48063607-48063626 | Msa0121870:intron | 40.0% | |
| !! | GGTTTTGGTGAGATTGTTGT+TGG | + | chr1_3:48063650-48063669 | Msa0121870:intron | 40.0% |
| TAGAGAATGTAACACCAAGC+TGG | + | chr1_3:48064208-48064227 | Msa0121870:intron | 40.0% | |
| !! | TTTTGAGAGAATGTCCCTTG+AGG | + | chr1_3:48064237-48064256 | Msa0121870:intron | 40.0% |
| AAAATGTGCATGCCTTCCTA+AGG | - | chr1_3:48064527-48064546 | None:intergenic | 40.0% | |
| !! | TTAGGAAGGCATGCACATTT+TGG | + | chr1_3:48064526-48064545 | Msa0121870:intron | 40.0% |
| !!! | TTTTGGTGCTTCTTACCTCA+AGG | + | chr1_3:48064543-48064562 | Msa0121870:intron | 40.0% |
| TTCTTTGCAAAAGAAGGCGA+CGG | + | chr1_3:48064732-48064751 | Msa0121870:CDS | 40.0% | |
| AAATTGATACCAGTTCCAGC+TGG | - | chr1_3:48064843-48064862 | None:intergenic | 40.0% | |
| TACAGGATAGATGTCCATGT+CGG | - | chr1_3:48064901-48064920 | None:intergenic | 40.0% | |
| TCAAATGAAACGCCAACATC+TGG | + | chr1_3:48064960-48064979 | Msa0121870:CDS | 40.0% | |
| AACTCAAGCAGTGTTTGAGA+AGG | + | chr1_3:48065010-48065029 | Msa0121870:CDS | 40.0% | |
| GCAGTGTTTGAGAAGGATAA+AGG | + | chr1_3:48065017-48065036 | Msa0121870:CDS | 40.0% | |
| TCTGCTTAGCTACCTTTAAC+CGG | - | chr1_3:48065049-48065068 | None:intergenic | 40.0% | |
| AGGTAGCTAAGCAGATATTG+TGG | + | chr1_3:48065054-48065073 | Msa0121870:CDS | 40.0% | |
| GGTAGCTAAGCAGATATTGT+GGG | + | chr1_3:48065055-48065074 | Msa0121870:CDS | 40.0% | |
| AAGCAGATATTGTGGGTGAA+TGG | + | chr1_3:48065062-48065081 | Msa0121870:CDS | 40.0% | |
| TATTGTGGGTGAATGGAATG+AGG | + | chr1_3:48065069-48065088 | Msa0121870:CDS | 40.0% | |
| TATGAGCTGCAGGAGATATA+TGG | + | chr1_3:48065092-48065111 | Msa0121870:CDS | 40.0% | |
| CTGCAGGAGATATATGGTAT+TGG | + | chr1_3:48065098-48065117 | Msa0121870:CDS | 40.0% | |
| AACTTCAGTTGAGAGTGACT+TGG | + | chr1_3:48065121-48065140 | Msa0121870:CDS | 40.0% | |
| ! | CAGATAACACACTCTTTTCC+AGG | - | chr1_3:48065158-48065177 | None:intergenic | 40.0% |
| ACTAAGCTGCTTATCCAAAC+AGG | - | chr1_3:48065505-48065524 | None:intergenic | 40.0% | |
| TAGCTTATGGAAATAGCCCA+TGG | + | chr1_3:48065652-48065671 | Msa0121870:intron | 40.0% | |
| ACATGCACTGCAACAAAGAA+AGG | - | chr1_3:48066072-48066091 | None:intergenic | 40.0% | |
| ! | ACAACCAGTAGAAAGGCTTT+TGG | + | chr1_3:48066147-48066166 | Msa0121870:CDS | 40.0% |
| ATCTCCAAAAGCCTTTCTAC+TGG | - | chr1_3:48066154-48066173 | None:intergenic | 40.0% | |
| !! | AGGCTTTTGGAGATCAAAGT+TGG | + | chr1_3:48066160-48066179 | Msa0121870:CDS | 40.0% |
| !! | GGCTTTTGGAGATCAAAGTT+GGG | + | chr1_3:48066161-48066180 | Msa0121870:CDS | 40.0% |
| CACTATCTTCTTCACTCTTC+AGG | - | chr1_3:48066199-48066218 | None:intergenic | 40.0% | |
| AAATCAAACAAGCATGGAGG+AGG | - | chr1_3:48066398-48066417 | None:intergenic | 40.0% | |
| GTGAAATCAAACAAGCATGG+AGG | - | chr1_3:48066401-48066420 | None:intergenic | 40.0% | |
| TTGTGCTTCTTGCTAAGTGG+AGG | + | chr1_3:48062612-48062631 | Msa0121870:five_prime_UTR | 45.0% | |
| AGGGTGCGTAAGTGAGTTAA+AGG | - | chr1_3:48062794-48062813 | None:intergenic | 45.0% | |
| !! | GTTTTGTTGCGGTGACTTAG+AGG | - | chr1_3:48062814-48062833 | None:intergenic | 45.0% |
| ! | GTAGCGGTTCTAACAATCGT+CGG | + | chr1_3:48062915-48062934 | Msa0121870:CDS | 45.0% |
| TCTAACAATCGTCGGAGACA+CGG | + | chr1_3:48062923-48062942 | Msa0121870:CDS | 45.0% | |
| ! | AAAGGCATAGGAACAGTTCC+CGG | - | chr1_3:48063088-48063107 | None:intergenic | 45.0% |
| AACTGTTCCTATGCCTTTGC+CGG | + | chr1_3:48063090-48063109 | Msa0121870:CDS | 45.0% | |
| GTATGATCACCATCATCGTC+AGG | + | chr1_3:48063117-48063136 | Msa0121870:CDS | 45.0% | |
| AGGCGATTGACCCAATATCT+TGG | + | chr1_3:48063137-48063156 | Msa0121870:CDS | 45.0% | |
| CGATTGACCCAATATCTTGG+AGG | + | chr1_3:48063140-48063159 | Msa0121870:CDS | 45.0% | |
| GCTGACACCTCCAAGATATT+GGG | - | chr1_3:48063150-48063169 | None:intergenic | 45.0% | |
| TGCTGACACCTCCAAGATAT+TGG | - | chr1_3:48063151-48063170 | None:intergenic | 45.0% | |
| GACTTCTGATGCTCCACATA+CGG | - | chr1_3:48063193-48063212 | None:intergenic | 45.0% | |
| ! | GTATGTGGAGCATCAGAAGT+CGG | + | chr1_3:48063192-48063211 | Msa0121870:CDS | 45.0% |
| GAACCTGATGAGGAAAATCC+TGG | + | chr1_3:48063262-48063281 | Msa0121870:CDS | 45.0% | |
| ! | AACCCAGGATTTTCCTCATC+AGG | - | chr1_3:48063268-48063287 | None:intergenic | 45.0% |
| ACTAAGTGAGGTCAGCTACA+TGG | - | chr1_3:48063557-48063576 | None:intergenic | 45.0% | |
| ATGTAGCTGACCTCACTTAG+TGG | + | chr1_3:48063556-48063575 | Msa0121870:intron | 45.0% | |
| TGTAGCTGACCTCACTTAGT+GGG | + | chr1_3:48063557-48063576 | Msa0121870:intron | 45.0% | |
| TGACCTCACTTAGTGGGATA+AGG | + | chr1_3:48063563-48063582 | Msa0121870:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+AGG | - | chr1_3:48063569-48063588 | None:intergenic | 45.0% |
| ! | AGGCTTGAGTGTTGTTATCG+TGG | + | chr1_3:48063583-48063602 | Msa0121870:intron | 45.0% |
| !!! | CTAGGTGTTTTAACGCCTTG+AGG | - | chr1_3:48064561-48064580 | None:intergenic | 45.0% |
| ! | TAAGGCACCTCTAAGGAACT+AGG | - | chr1_3:48064579-48064598 | None:intergenic | 45.0% |
| ! | CTTGCATTAAGGCACCTCTA+AGG | - | chr1_3:48064586-48064605 | None:intergenic | 45.0% |
| GTTATTGAAAGTGGCCGACA+TGG | + | chr1_3:48064884-48064903 | Msa0121870:CDS | 45.0% | |
| GCATCTGCTTTAACTGCTAC+AGG | - | chr1_3:48064918-48064937 | None:intergenic | 45.0% | |
| ! | TCAGTTGAGAGTGACTTGGA+TGG | + | chr1_3:48065125-48065144 | Msa0121870:CDS | 45.0% |
| ! | CAGTTGAGAGTGACTTGGAT+GGG | + | chr1_3:48065126-48065145 | Msa0121870:CDS | 45.0% |
| GAAAATACCATGTGGCGACA+GGG | - | chr1_3:48065212-48065231 | None:intergenic | 45.0% | |
| GGGAAACGGAAAATACCATG+TGG | - | chr1_3:48065220-48065239 | None:intergenic | 45.0% | |
| AAATTTGGCAGCGCCAAACA+TGG | - | chr1_3:48065358-48065377 | None:intergenic | 45.0% | |
| TTGTTGCAGTGCATGTGTAG+CGG | + | chr1_3:48066076-48066095 | Msa0121870:intron | 45.0% | |
| ! | TCTACTGGTTGTCTGCAGAT+TGG | - | chr1_3:48066139-48066158 | None:intergenic | 45.0% |
| TCTGCAGACAACCAGTAGAA+AGG | + | chr1_3:48066140-48066159 | Msa0121870:CDS | 45.0% | |
| !!! | TATTAATATTTTGAATATTA+TGG | + | chr1_3:48064428-48064447 | Msa0121870:intron | 5.0% |
| TTACCGGAGGATGAACTCGT+CGG | - | chr1_3:48062964-48062983 | None:intergenic | 50.0% | |
| AATCGGTTACCAGCAGCATC+CGG | - | chr1_3:48063007-48063026 | None:intergenic | 50.0% | |
| CAGCAGCAGGGTAAACGAAT+CGG | - | chr1_3:48063024-48063043 | None:intergenic | 50.0% | |
| TAATTACTATCCTCCGCCGC+CGG | + | chr1_3:48063066-48063085 | Msa0121870:CDS | 50.0% | |
| !! | ATCTTGGAGGTGTCAGCAAC+AGG | + | chr1_3:48063153-48063172 | Msa0121870:CDS | 50.0% |
| CAAGCTCCCGATATCGTCAA+AGG | - | chr1_3:48064022-48064041 | None:intergenic | 50.0% | |
| CTGCGTCCTTACGTCAACAA+AGG | + | chr1_3:48064755-48064774 | Msa0121870:CDS | 50.0% | |
| CAGCTGGCTGTCTAAACTTC+TGG | - | chr1_3:48064827-48064846 | None:intergenic | 50.0% | |
| CAGAAGTTTAGACAGCCAGC+TGG | + | chr1_3:48064825-48064844 | Msa0121870:CDS | 50.0% | |
| TTTAGACAGCCAGCTGGAAC+TGG | + | chr1_3:48064831-48064850 | Msa0121870:CDS | 50.0% | |
| AGATGCATCTTCAAGCGACG+TGG | + | chr1_3:48064932-48064951 | Msa0121870:CDS | 50.0% | |
| TGGAATGAGGTATGAGCTGC+AGG | + | chr1_3:48065082-48065101 | Msa0121870:CDS | 50.0% | |
| GGAAAATACCATGTGGCGAC+AGG | - | chr1_3:48065213-48065232 | None:intergenic | 50.0% | |
| ! | GCGGATGTGCGAACGTTTTA+AGG | + | chr1_3:48066095-48066114 | Msa0121870:CDS | 50.0% |
| CTTCTTCACTCTTCAGGCTC+AGG | - | chr1_3:48066193-48066212 | None:intergenic | 50.0% | |
| TCAAACAAGCATGGAGGAGG+AGG | - | chr1_3:48066395-48066414 | None:intergenic | 50.0% | |
| AACAATCGTCGGAGACACGG+TGG | + | chr1_3:48062926-48062945 | Msa0121870:CDS | 55.0% | |
| GGCGGCGGAGGATAGTAATT+AGG | - | chr1_3:48063067-48063086 | None:intergenic | 55.0% | |
| AATTACTATCCTCCGCCGCC+GGG | + | chr1_3:48063067-48063086 | Msa0121870:CDS | 55.0% | |
| ! | TGATGGTGATCATACGGCGC+CGG | - | chr1_3:48063112-48063131 | None:intergenic | 55.0% |
| GGTCAATCGCCTGACGATGA+TGG | - | chr1_3:48063129-48063148 | None:intergenic | 55.0% | |
| ACTTCTGGCCAAGACCTTGC+TGG | - | chr1_3:48064812-48064831 | None:intergenic | 55.0% | |
| GCATCTTCAAGCGACGTGGA+CGG | + | chr1_3:48064936-48064955 | Msa0121870:CDS | 55.0% | |
| GACTTGGATGGGAATGACCC+TGG | + | chr1_3:48065137-48065156 | Msa0121870:CDS | 55.0% | |
| ATACCATGTGGCGACAGGGA+AGG | - | chr1_3:48065208-48065227 | None:intergenic | 55.0% | |
| AATCGTCGGAGACACGGTGG+CGG | + | chr1_3:48062929-48062948 | Msa0121870:CDS | 60.0% | |
| TGGCCGACGAGTTCATCCTC+CGG | + | chr1_3:48062958-48062977 | Msa0121870:CDS | 60.0% | |
| TTACCAGCAGCATCCGGTGG+CGG | - | chr1_3:48063001-48063020 | None:intergenic | 60.0% | |
| GATACGGAGGAGCAGCAGCA+GGG | - | chr1_3:48063036-48063055 | None:intergenic | 60.0% | |
| TGATACGGAGGAGCAGCAGC+AGG | - | chr1_3:48063037-48063056 | None:intergenic | 60.0% | |
| ATAGGAACAGTTCCCGGCGG+CGG | - | chr1_3:48063082-48063101 | None:intergenic | 60.0% | |
| GGCATAGGAACAGTTCCCGG+CGG | - | chr1_3:48063085-48063104 | None:intergenic | 60.0% | |
| !! | TGATCATACGGCGCCGGCAA+AGG | - | chr1_3:48063106-48063125 | None:intergenic | 60.0% |
| TGATGCTCCACATACGGCGC+CGG | - | chr1_3:48063187-48063206 | None:intergenic | 60.0% | |
| GGAAGGACAGTTGTGTCGCG+AGG | - | chr1_3:48065191-48065210 | None:intergenic | 60.0% | |
| TGTCCTTCCCTGTCGCCACA+TGG | + | chr1_3:48065202-48065221 | Msa0121870:CDS | 60.0% | |
| CACTCTTCAGGCTCAGGCTC+AGG | - | chr1_3:48066187-48066206 | None:intergenic | 60.0% | |
| ! | AGACACGGTGGCGGTGGAAG+TGG | + | chr1_3:48062938-48062957 | Msa0121870:CDS | 65.0% |
| CGGTTACCAGCAGCATCCGG+TGG | - | chr1_3:48063004-48063023 | None:intergenic | 65.0% | |
| !! | TACGGCGCCGGCAAAGGCAT+AGG | - | chr1_3:48063100-48063119 | None:intergenic | 65.0% |
| ! | GAGGTGTCAGCAACAGGCGC+CGG | + | chr1_3:48063159-48063178 | Msa0121870:CDS | 65.0% |
| !! | GGTGGCGGAGGAGTTACCGG+AGG | - | chr1_3:48062977-48062996 | None:intergenic | 70.0% |
| !! | GGCGGTGGCGGAGGAGTTAC+CGG | - | chr1_3:48062980-48062999 | None:intergenic | 70.0% |
| ! | CGTCGGAGACACGGTGGCGG+TGG | + | chr1_3:48062932-48062951 | Msa0121870:CDS | 75.0% |
| ! | CCAGCAGCATCCGGTGGCGG+CGG | - | chr1_3:48062998-48063017 | None:intergenic | 75.0% |
| GGAACAGTTCCCGGCGGCGG+AGG | - | chr1_3:48063079-48063098 | None:intergenic | 75.0% | |
| !! | TCAGCAACAGGCGCCGGCGC+CGG | + | chr1_3:48063165-48063184 | Msa0121870:CDS | 75.0% |
| !! | TCCACATACGGCGCCGGCGC+CGG | - | chr1_3:48063181-48063200 | None:intergenic | 75.0% |
| ! | TCCTCCGCCACCGCCGCCAC+CGG | + | chr1_3:48062985-48063004 | Msa0121870:CDS | 80.0% |
| !! | GCATCCGGTGGCGGCGGTGG+CGG | - | chr1_3:48062992-48063011 | None:intergenic | 80.0% |
| !! | GCAGCATCCGGTGGCGGCGG+TGG | - | chr1_3:48062995-48063014 | None:intergenic | 80.0% |
| ! | CCGCCGCCACCGGATGCTGC+TGG | + | chr1_3:48062995-48063014 | Msa0121870:CDS | 80.0% |
| !! | TCCGGTGGCGGCGGTGGCGG+AGG | - | chr1_3:48062989-48063008 | None:intergenic | 85.0% |
| !!! | GCCGGCGCCGGCGCCGTATG+TGG | + | chr1_3:48063177-48063196 | Msa0121870:CDS | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 48062586 | 48066455 | 48062586 | ID=Msa0121870;Name=Msa0121870 |
| chr1_3 | mRNA | 48062586 | 48066455 | 48062586 | ID=Msa0121870-mRNA-1;Parent=Msa0121870;Name=Msa0121870-mRNA-1;_AED=0.02;_eAED=0.02;_QI=313|1|1|1|1|1|3|248|352 |
| chr1_3 | exon | 48062586 | 48063329 | 48062586 | ID=Msa0121870-mRNA-1:exon:14482;Parent=Msa0121870-mRNA-1 |
| chr1_3 | exon | 48064719 | 48065223 | 48064719 | ID=Msa0121870-mRNA-1:exon:14483;Parent=Msa0121870-mRNA-1 |
| chr1_3 | exon | 48066085 | 48066455 | 48066085 | ID=Msa0121870-mRNA-1:exon:14484;Parent=Msa0121870-mRNA-1 |
| chr1_3 | five_prime_UTR | 48062586 | 48062898 | 48062586 | ID=Msa0121870-mRNA-1:five_prime_utr;Parent=Msa0121870-mRNA-1 |
| chr1_3 | CDS | 48062899 | 48063329 | 48062899 | ID=Msa0121870-mRNA-1:cds;Parent=Msa0121870-mRNA-1 |
| chr1_3 | CDS | 48064719 | 48065223 | 48064719 | ID=Msa0121870-mRNA-1:cds;Parent=Msa0121870-mRNA-1 |
| chr1_3 | CDS | 48066085 | 48066207 | 48066085 | ID=Msa0121870-mRNA-1:cds;Parent=Msa0121870-mRNA-1 |
| chr1_3 | three_prime_UTR | 48066208 | 48066455 | 48066208 | ID=Msa0121870-mRNA-1:three_prime_utr;Parent=Msa0121870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
