AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0137820

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0137820 MtrunA17_Chr1g0210221 97.357 227 6 0 1 227 1 227 3.72e-160 442
Msa0137820 MtrunA17_Chr7g0249231 42.273 220 114 1 4 223 72 278 2.11e-50 165
Msa0137820 MtrunA17_Chr1g0169451 40.000 225 113 6 7 223 151 361 8.73e-37 132
Msa0137820 MtrunA17_Chr5g0397071 32.883 222 123 4 7 219 138 342 1.59e-23 96.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0137820 AT1G25520.1 76.419 229 53 1 1 228 1 229 1.04e-115 330
Msa0137820 AT1G68650.1 75.439 228 55 1 1 228 1 227 6.22e-114 325
Msa0137820 AT5G36290.1 40.625 224 115 2 3 223 80 288 1.79e-48 161
Msa0137820 AT5G36290.2 40.625 224 115 2 3 223 80 288 1.79e-48 161
Msa0137820 AT4G13590.2 39.732 224 115 5 7 223 145 355 3.66e-39 139
Msa0137820 AT4G13590.1 39.732 224 115 5 7 223 145 355 4.12e-39 138
Msa0137820 AT1G64150.1 32.766 235 117 4 1 219 152 361 6.80e-24 98.2

Find 172 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCTACATTAATTAAATT+TGG 0.066790 1_3:+70445601 None:intergenic
TATATATGATATTCAATTTA+TGG 0.143029 1_3:-70444823 Msa0137820:three_prime_UTR
TAAACCATAGACTCTTTAAA+AGG 0.225221 1_3:+70445656 None:intergenic
CGAATCATGCAAACCTAATC+TGG 0.234432 1_3:-70444585 Msa0137820:three_prime_UTR
TCCTTGAAAGAGGCTATATT+TGG 0.236172 1_3:-70447631 Msa0137820:CDS
TTTCTCTCCCATCTTGTTAC+AGG 0.249070 1_3:-70446784 Msa0137820:intron
CTTTACATTCTAAAGTGAAT+TGG 0.268811 1_3:+70445021 None:intergenic
GGTGGAAAGGCAAGCTCTTT+TGG 0.271380 1_3:+70445706 None:intergenic
TTGTGGTTGCAATACCTATA+TGG 0.276655 1_3:-70445055 Msa0137820:three_prime_UTR
TTCTCTCTGTTCTTGTTGGT+TGG 0.281934 1_3:-70447963 Msa0137820:CDS
TGTCTCAAAAGTTATATAAA+TGG 0.289019 1_3:-70444003 Msa0137820:three_prime_UTR
AACCCATTTGGCGTGGTTCT+TGG 0.294089 1_3:-70446505 Msa0137820:CDS
TGTACTTCTGCTGCTGTTAT+CGG 0.295744 1_3:-70446194 Msa0137820:CDS
AATATCATATATACCATATA+GGG 0.302899 1_3:+70444833 None:intergenic
AAAAGAATGCTCACCAGATT+TGG 0.305070 1_3:+70447934 None:intergenic
ATTACGACGTTCTTATTCTT+CGG 0.306446 1_3:-70447667 Msa0137820:CDS
TTCCTACATTAATTAAATTT+GGG 0.308143 1_3:+70445602 None:intergenic
CAAGATTGGGGTGAGGTAGA+AGG 0.310224 1_3:-70445207 Msa0137820:three_prime_UTR
ACAATTCTCTCTGTTCTTGT+TGG 0.313902 1_3:-70447967 Msa0137820:CDS
ACATTTGATTTGTTAACTAA+TGG 0.316243 1_3:+70444985 None:intergenic
ATGTGAAAGTTAGCATAAAA+AGG 0.316458 1_3:-70445455 Msa0137820:three_prime_UTR
TTGTGTGACATGTCATCTTA+TGG 0.318729 1_3:+70444608 None:intergenic
TTACACTTTAGTCACTTTAG+AGG 0.321690 1_3:-70444865 Msa0137820:intron
GAGGATTCAAATCCCCTATA+TGG 0.334626 1_3:-70444846 Msa0137820:three_prime_UTR
TGGTTGGGCTGCTCCAAATC+TGG 0.336034 1_3:-70447947 Msa0137820:intron
TGGTTCGTTCAACCCTTAAC+TGG 0.340621 1_3:-70448941 Msa0137820:five_prime_UTR
GTGTGAATTGTTACCAGTTA+AGG 0.342140 1_3:+70448928 None:intergenic
CCACGACGCCTTGTCTTAAC+AGG 0.342518 1_3:-70448138 Msa0137820:CDS
GAATATCATATATACCATAT+AGG 0.345054 1_3:+70444832 None:intergenic
TCTCTCTGTTCTTGTTGGTT+GGG 0.349163 1_3:-70447962 Msa0137820:CDS
TTGCAGTAACGGATTCTCTA+TGG 0.349576 1_3:-70445548 Msa0137820:three_prime_UTR
AATCAAAGCAAATTTATGAT+AGG 0.351747 1_3:+70444303 None:intergenic
GGAAGTAATAAAACAAGATT+GGG 0.356011 1_3:-70445220 Msa0137820:three_prime_UTR
CTTCTGTCAATCTCACTTGC+AGG 0.356511 1_3:+70444631 None:intergenic
ATTTGGCAGGTTGGACTCTC+AGG 0.356838 1_3:-70445879 Msa0137820:intron
AAATGCCATGCTACTTAAGT+TGG 0.363284 1_3:+70444710 None:intergenic
TTACGACGTTCTTATTCTTC+GGG 0.364759 1_3:-70447666 Msa0137820:CDS
AATTAATGTAGGAAGTTGAT+TGG 0.364857 1_3:-70445593 Msa0137820:three_prime_UTR
GAATTTCCAATGCTTATTGC+TGG 0.370263 1_3:-70445368 Msa0137820:three_prime_UTR
GGCTTGATGTTGGGGACATC+GGG 0.375158 1_3:+70444777 None:intergenic
TGCAATGGAGATAATTAGAT+TGG 0.377252 1_3:-70444531 Msa0137820:three_prime_UTR
CCATTGCAAGGAAAAGATTA+TGG 0.379253 1_3:+70444546 None:intergenic
GCAAGGGATGGCTTGATGTT+GGG 0.381808 1_3:+70444768 None:intergenic
AAGATTGGGGTGAGGTAGAA+GGG 0.385206 1_3:-70445206 Msa0137820:three_prime_UTR
ATTGTAATTAGGACAAAGAT+TGG 0.389163 1_3:-70447384 Msa0137820:intron
TATTCTTCGGGTTTGGACTT+TGG 0.392999 1_3:-70447654 Msa0137820:CDS
AGAGCTTGCCTTTCCACCTT+GGG 0.393106 1_3:-70445701 Msa0137820:three_prime_UTR
CCTCCAAGAACCACGCCAAA+TGG 0.394458 1_3:+70446502 None:intergenic
GGTCACAATGCAAGAGTATT+GGG 0.394608 1_3:+70445123 None:intergenic
TTTACATTCTAAAGTGAATT+GGG 0.403310 1_3:+70445022 None:intergenic
ACGTTCTTATTCTTCGGGTT+TGG 0.403780 1_3:-70447661 Msa0137820:CDS
AATGACCCTGCCTGGGTTGT+AGG 0.407490 1_3:-70445241 Msa0137820:three_prime_UTR
ATTGGTTAGTGATTATTCTC+AGG 0.408301 1_3:-70445788 Msa0137820:three_prime_UTR
CGAGTGGATAGTGCAAGTTT+TGG 0.411610 1_3:+70444238 None:intergenic
AGGAAGTAATAAAACAAGAT+TGG 0.418084 1_3:-70445221 Msa0137820:three_prime_UTR
GGCTGAAGTTGAAGCTGAAC+TGG 0.424673 1_3:-70447474 Msa0137820:intron
TCCAAATATAGCCTCTTTCA+AGG 0.428412 1_3:+70447630 None:intergenic
GAACCAAGTCTACCCAGATT+AGG 0.431568 1_3:+70444572 None:intergenic
TGGCTTGATGTTGGGGACAT+CGG 0.431889 1_3:+70444776 None:intergenic
GAGATCACAAAAGAATTTGT+TGG 0.434053 1_3:-70444468 Msa0137820:three_prime_UTR
TGTGAATTGTTACCAGTTAA+GGG 0.434221 1_3:+70448929 None:intergenic
AGCTACAAAAGATACCAAAA+AGG 0.435268 1_3:-70447347 Msa0137820:intron
CTTGTTACAGTGGTTGAGAT+TGG 0.435916 1_3:-70445732 Msa0137820:three_prime_UTR
GCTGCAGATGAAAACCCATT+TGG 0.436487 1_3:-70446517 Msa0137820:CDS
TCAATTTATGGAAATCTTAG+TGG 0.443978 1_3:-70444811 Msa0137820:three_prime_UTR
TTATGCAGATCTCTCGTAGT+TGG 0.455915 1_3:-70447699 Msa0137820:intron
TCTAAAGTGAATTGGGAAGT+TGG 0.458090 1_3:+70445029 None:intergenic
AATGATGAAGTCTATGCTAT+TGG 0.459214 1_3:-70445806 Msa0137820:exon
TGTGGTTGCAATACCTATAT+GGG 0.463329 1_3:-70445054 Msa0137820:three_prime_UTR
TCTCACTTGCAGGATCTACT+TGG 0.465689 1_3:+70444641 None:intergenic
AAGAGCTTGCCTTTCCACCT+TGG 0.467866 1_3:-70445702 Msa0137820:three_prime_UTR
GTGTACATCTAGGCTCTGTT+TGG 0.469439 1_3:-70443913 Msa0137820:three_prime_UTR
TGGGAAGTTGGATCCCATAT+AGG 0.469866 1_3:+70445041 None:intergenic
TATGCAGATCTCTCGTAGTT+GGG 0.473253 1_3:-70447698 Msa0137820:intron
TTGAATCTGTCACAACATAC+AGG 0.474290 1_3:+70445088 None:intergenic
AAACCATAGACTCTTTAAAA+GGG 0.476907 1_3:+70445657 None:intergenic
CGACTGAAGAAAGGAATGAT+TGG 0.477906 1_3:+70445829 None:intergenic
TAGTCCTTAGACACCATCCC+AGG 0.478094 1_3:+70445280 None:intergenic
CCATTTGGCGTGGTTCTTGG+AGG 0.480629 1_3:-70446502 Msa0137820:CDS
ACTGCAAGTACGTGTTGAAA+AGG 0.483032 1_3:+70445564 None:intergenic
TTCATCTGCAGCTAAACCTA+TGG 0.483168 1_3:+70446528 None:intergenic
ATTGAGAGAGGAAGATAAAG+AGG 0.483256 1_3:+70445407 None:intergenic
ACTGTGAAAATGACCCTGCC+TGG 0.483337 1_3:-70445249 Msa0137820:three_prime_UTR
AGCAAGGGATGGCTTGATGT+TGG 0.485588 1_3:+70444767 None:intergenic
ATTTATTACCTGTAACAAGA+TGG 0.486365 1_3:+70446776 None:intergenic
CATTTGGCGTGGTTCTTGGA+GGG 0.488586 1_3:-70446501 Msa0137820:CDS
TGCTCATTCAAATCTACGAC+AGG 0.490494 1_3:+70444201 None:intergenic
AATGCCATGCTACTTAAGTT+GGG 0.490985 1_3:+70444711 None:intergenic
AAAAGAATTTGTTGGTGACT+CGG 0.494279 1_3:-70444460 Msa0137820:three_prime_UTR
TTTGTTCAGTTGGCTACCAT+AGG 0.495409 1_3:-70446544 Msa0137820:intron
TGGACTTTGGTCCTTGAAAG+AGG 0.497549 1_3:-70447641 Msa0137820:CDS
AAAACCAAGCTTGTTTGTAT+GGG 0.498552 1_3:-70445179 Msa0137820:three_prime_UTR
CTCCAAGAACCACGCCAAAT+GGG 0.499798 1_3:+70446503 None:intergenic
ATTCCACCAGCAATAAGCAT+TGG 0.500025 1_3:+70445362 None:intergenic
AAATATGAGCTCAATTGTTC+AGG 0.500477 1_3:-70448852 Msa0137820:intron
TTTATTACCTGTAACAAGAT+GGG 0.502150 1_3:+70446777 None:intergenic
CAGTTAACTTGTGTACATCT+AGG 0.503622 1_3:-70443923 Msa0137820:three_prime_UTR
ATGGAGATAATTAGATTGGA+TGG 0.505199 1_3:-70444527 Msa0137820:three_prime_UTR
TATCCACTCGCTCTAATCTC+AGG 0.505318 1_3:-70444225 Msa0137820:three_prime_UTR
GGACAGGGAATCAGAGGAGT+TGG 0.506438 1_3:-70447495 Msa0137820:intron
CAATTTATGGAAATCTTAGT+GGG 0.507799 1_3:-70444810 Msa0137820:three_prime_UTR
AGGTCACAATGCAAGAGTAT+TGG 0.509695 1_3:+70445122 None:intergenic
CAAGGGATGGCTTGATGTTG+GGG 0.511192 1_3:+70444769 None:intergenic
GAATTTGTTGGTGACTCGGA+TGG 0.513234 1_3:-70444456 Msa0137820:three_prime_UTR
TCAACACGTACTTGCAGTAA+CGG 0.514939 1_3:-70445559 Msa0137820:three_prime_UTR
TTCATCATTCGACTGAAGAA+AGG 0.517530 1_3:+70445820 None:intergenic
CTGTTAAGACAAGGCGTCGT+GGG 0.520280 1_3:+70448139 None:intergenic
TTTCTAAGCTACTTGAGGGT+AGG 0.524668 1_3:+70444327 None:intergenic
GATGTACACAAGTTAACTGT+TGG 0.527769 1_3:+70443927 None:intergenic
TAGGTGAAGTGGTGATCACT+TGG 0.529337 1_3:+70444346 None:intergenic
AAAGAGGCTATATTTGGAGA+AGG 0.530172 1_3:-70447625 Msa0137820:CDS
TTTCCAATGCTTATTGCTGG+TGG 0.533139 1_3:-70445365 Msa0137820:three_prime_UTR
TTACTTCCTACAACCCAGGC+AGG 0.536764 1_3:+70445235 None:intergenic
AAGAGGCTATATTTGGAGAA+GGG 0.538449 1_3:-70447624 Msa0137820:intron
TTGGATAGATTAAGTCAGGT+GGG 0.542073 1_3:+70444257 None:intergenic
TGCAGTAACGGATTCTCTAT+GGG 0.542097 1_3:-70445547 Msa0137820:three_prime_UTR
AGATTGGGGTGAGGTAGAAG+GGG 0.542993 1_3:-70445205 Msa0137820:three_prime_UTR
GACCCAAATTTAATTAATGT+AGG 0.546688 1_3:-70445604 Msa0137820:three_prime_UTR
AGCTTTGACCCAAGGTGGAA+AGG 0.549201 1_3:+70445693 None:intergenic
AAGATAAAGAGGTTAAGTGT+AGG 0.549712 1_3:+70445418 None:intergenic
CTTAAGTTGGGCTCCAGTGA+AGG 0.551044 1_3:+70444723 None:intergenic
AAATCATATCAATTCAGTGT+TGG 0.551555 1_3:-70448961 None:intergenic
ACAACCCATACAAACAAGCT+TGG 0.553522 1_3:+70445175 None:intergenic
AAACCTAATCTGGGTAGACT+TGG 0.554192 1_3:-70444575 Msa0137820:three_prime_UTR
AGCAAACATGCTTGTTACAG+TGG 0.556245 1_3:-70445742 Msa0137820:three_prime_UTR
CTACTTGAGGGTAGGTGAAG+TGG 0.558672 1_3:+70444335 None:intergenic
TGAATGGGGTGACAAGAGCC+AGG 0.563011 1_3:-70446653 Msa0137820:intron
GTTGGGCTCCAGTGAAGGAA+AGG 0.563774 1_3:+70444728 None:intergenic
ATTTCACACAACCCCTGTCA+AGG 0.564235 1_3:+70445483 None:intergenic
CTGTTGGAGTATTGTGTACG+AGG 0.564608 1_3:+70443943 None:intergenic
ATCTAATTATCTCCATTGCA+AGG 0.567163 1_3:+70444534 None:intergenic
TTAAGTGTAGGCACATGGAA+TGG 0.568804 1_3:+70445430 None:intergenic
TTTGGATAGATTAAGTCAGG+TGG 0.571686 1_3:+70444256 None:intergenic
TTTGATGGACAGGGAATCAG+AGG 0.572662 1_3:-70447501 Msa0137820:intron
GAATCATGCAAACCTAATCT+GGG 0.572828 1_3:-70444584 Msa0137820:three_prime_UTR
TAATTAGGACAAAGATTGGA+AGG 0.578900 1_3:-70447380 Msa0137820:intron
TTATGCAAGCAAGCAAGGGA+TGG 0.585475 1_3:+70444756 None:intergenic
ACTTCTGCTGCTGTTATCGG+AGG 0.588680 1_3:-70446191 Msa0137820:CDS
GATCTCAGAGAGAACGGTCA+TGG 0.590501 1_3:+70448715 None:intergenic
TTTATTACTTCCTACAACCC+AGG 0.590706 1_3:+70445231 None:intergenic
ATGACCGTTCTCTCTGAGAT+CGG 0.592001 1_3:-70448713 Msa0137820:CDS
CTGTGAAAATGACCCTGCCT+GGG 0.596629 1_3:-70445248 Msa0137820:three_prime_UTR
CCTGTTAAGACAAGGCGTCG+TGG 0.599776 1_3:+70448138 None:intergenic
AGTCCTTAGACACCATCCCA+GGG 0.600657 1_3:+70445281 None:intergenic
AGAATGAAAGCTTTGACCCA+AGG 0.600986 1_3:+70445685 None:intergenic
AATCATAATTCAAATTGTCA+AGG 0.608632 1_3:+70444379 None:intergenic
TCACAACATACAGGCATGGA+CGG 0.609913 1_3:+70445097 None:intergenic
CGAGGCAACCTGTTAAGACA+AGG 0.611382 1_3:+70448130 None:intergenic
ATGAAAGCTTTGACCCAAGG+TGG 0.611430 1_3:+70445688 None:intergenic
GGGCCTGAGATTAGAGCGAG+TGG 0.612744 1_3:+70444222 None:intergenic
ATCACCGATCTCAGAGAGAA+CGG 0.615665 1_3:+70448709 None:intergenic
TGGCAGGTTGGACTCTCAGG+TGG 0.615800 1_3:-70445876 Msa0137820:intron
ACATACAGGCATGGACGGAA+AGG 0.617790 1_3:+70445102 None:intergenic
AATAAAACAAGATTGGGGTG+AGG 0.618298 1_3:-70445214 Msa0137820:three_prime_UTR
AGAGGTTAAGTGTAGGCACA+TGG 0.620341 1_3:+70445425 None:intergenic
ATGGTGTCTAAGGACTAAGT+TGG 0.621259 1_3:-70445274 Msa0137820:three_prime_UTR
CTTCTGCTGCTGTTATCGGA+GGG 0.621384 1_3:-70446190 Msa0137820:CDS
TTTCACACAACCCCTGTCAA+GGG 0.622813 1_3:+70445484 None:intergenic
GGAGCCCAACTTAAGTAGCA+TGG 0.625775 1_3:-70444715 Msa0137820:three_prime_UTR
TACTTCCTACAACCCAGGCA+GGG 0.629717 1_3:+70445236 None:intergenic
ATATCATATATACCATATAG+GGG 0.639416 1_3:+70444834 None:intergenic
AGATGAAAACCCATTTGGCG+TGG 0.640914 1_3:-70446512 Msa0137820:CDS
TGTTGGAGTATTGTGTACGA+GGG 0.645285 1_3:+70443944 None:intergenic
TCTGTCACAACATACAGGCA+TGG 0.650709 1_3:+70445093 None:intergenic
ATGCATCAATAGATTGAGAG+AGG 0.653137 1_3:+70445395 None:intergenic
TCCTTAGACACCATCCCAGG+GGG 0.662135 1_3:+70445283 None:intergenic
GAAGTAATAAAACAAGATTG+GGG 0.671838 1_3:-70445219 Msa0137820:three_prime_UTR
GTCCTTAGACACCATCCCAG+GGG 0.684448 1_3:+70445282 None:intergenic
GTTGGAGTATTGTGTACGAG+GGG 0.704229 1_3:+70443945 None:intergenic
GCTCATTCAAATCTACGACA+GGG 0.711540 1_3:+70444202 None:intergenic
TTCTTACTATCAAAGCTGCG+AGG 0.724515 1_3:+70448112 None:intergenic
CCTTAGACACCATCCCAGGG+GGG 0.754474 1_3:+70445284 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATGATATTCAATTTA+TGG - chr1_3:70448013-70448032 Msa0137820:intron 10.0%
!!! TATTCATTTTGATTTTGATT+AGG - chr1_3:70444080-70444099 Msa0137820:three_prime_UTR 15.0%
!!! ATTCATTTTGATTTTGATTA+GGG - chr1_3:70444081-70444100 Msa0137820:three_prime_UTR 15.0%
!!! TTTCATTTTCTTGTATATAT+TGG - chr1_3:70446227-70446246 Msa0137820:intron 15.0%
!! AATTATTAGTTGTTTATTAC+AGG - chr1_3:70446607-70446626 Msa0137820:intron 15.0%
!! ATTATTAGTTGTTTATTACA+GGG - chr1_3:70446608-70446627 Msa0137820:intron 15.0%
!! GAAATTACTTGAATTAAAAA+AGG + chr1_3:70446776-70446795 None:intergenic 15.0%
!! TTCCTACATTAATTAAATTT+GGG + chr1_3:70447237-70447256 None:intergenic 15.0%
!! AATATCATATATACCATATA+GGG + chr1_3:70448006-70448025 None:intergenic 15.0%
!!! TAATACAACTCTTTTAATTA+AGG - chr1_3:70448865-70448884 Msa0137820:exon 15.0%
!! AAACAGAAAATGAAAAAATG+AGG + chr1_3:70444034-70444053 None:intergenic 20.0%
!! ATTCAGTTACAATTCATTAT+TGG - chr1_3:70444367-70444386 Msa0137820:three_prime_UTR 20.0%
!! GAGTTTCAATTTCAAATATT+AGG - chr1_3:70444424-70444443 Msa0137820:three_prime_UTR 20.0%
!! AGATAACAAATATATCAAAC+AGG - chr1_3:70444578-70444597 Msa0137820:three_prime_UTR 20.0%
!! AAAAACAAAGATAACAAATC+TGG + chr1_3:70444791-70444810 None:intergenic 20.0%
!!! TATCTTTGTTTTTAAAGTAG+TGG - chr1_3:70444798-70444817 Msa0137820:three_prime_UTR 20.0%
!!! CTATAATTCGAAATTTTACA+AGG + chr1_3:70444843-70444862 None:intergenic 20.0%
!! CTTGTAAAATTTCGAATTAT+AGG - chr1_3:70444841-70444860 Msa0137820:three_prime_UTR 20.0%
!! ATCAAAGAAAAAAGATAATG+CGG + chr1_3:70445091-70445110 None:intergenic 20.0%
!! AATAGCATGAAAATCAATAA+GGG + chr1_3:70445119-70445138 None:intergenic 20.0%
!! TAATAGCATGAAAATCAATA+AGG + chr1_3:70445120-70445139 None:intergenic 20.0%
!! TTCATTAGAAATGTATAATC+AGG + chr1_3:70445264-70445283 None:intergenic 20.0%
!! TTCGTAATAAATTCATTTGA+TGG - chr1_3:70445320-70445339 Msa0137820:three_prime_UTR 20.0%
!!! AGTAGACAAAATATTTTCTA+TGG + chr1_3:70445660-70445679 None:intergenic 20.0%
!! CAAATATATCTTTAACCATT+TGG + chr1_3:70445701-70445720 None:intergenic 20.0%
!! CAAATGGTTAAAGATATATT+TGG - chr1_3:70445699-70445718 Msa0137820:three_prime_UTR 20.0%
!! AACTTATTCATACTTTGAAT+AGG - chr1_3:70445795-70445814 Msa0137820:three_prime_UTR 20.0%
!! TATGACAAATAATGTGTATT+AGG + chr1_3:70445977-70445996 None:intergenic 20.0%
!!! CATTATTTGTCATATTTTTC+AGG - chr1_3:70445983-70446002 Msa0137820:intron 20.0%
!!! TAACTTTTTTTTTGTTCAGT+TGG - chr1_3:70446282-70446301 Msa0137820:intron 20.0%
!! TTATTAGTTGTTTATTACAG+GGG - chr1_3:70446609-70446628 Msa0137820:intron 20.0%
!! TTAAAAAAGGTGGAAAAAAA+AGG + chr1_3:70446763-70446782 None:intergenic 20.0%
!! ATTACTTGAATTAAAAAAGG+TGG + chr1_3:70446773-70446792 None:intergenic 20.0%
!! AGTAAATGAAAAAGAAGTAA+TGG - chr1_3:70446819-70446838 Msa0137820:CDS 20.0%
!!! GGAATTCTTTTTATTGTTTT+TGG - chr1_3:70446981-70447000 Msa0137820:intron 20.0%
!! CTTCCTACATTAATTAAATT+TGG + chr1_3:70447238-70447257 None:intergenic 20.0%
!!! TTTACATTCTAAAGTGAATT+GGG + chr1_3:70447817-70447836 None:intergenic 20.0%
!!! ACATTTGATTTGTTAACTAA+TGG + chr1_3:70447854-70447873 None:intergenic 20.0%
!! ATATCATATATACCATATAG+GGG + chr1_3:70448005-70448024 None:intergenic 20.0%
!! GAATATCATATATACCATAT+AGG + chr1_3:70448007-70448026 None:intergenic 20.0%
!! AATCATAATTCAAATTGTCA+AGG + chr1_3:70448460-70448479 None:intergenic 20.0%
!! AATCAAAGCAAATTTATGAT+AGG + chr1_3:70448536-70448555 None:intergenic 20.0%
!! CACAAAAATTGTGAAAAAAA+TGG + chr1_3:70448716-70448735 None:intergenic 20.0%
!! TGTCTCAAAAGTTATATAAA+TGG - chr1_3:70448833-70448852 Msa0137820:intron 20.0%
! AATGAGGTGAAATAATTGAT+AGG + chr1_3:70444018-70444037 None:intergenic 25.0%
! TTGAGGTGAGAAAATAAATA+AGG + chr1_3:70444202-70444221 None:intergenic 25.0%
!!! TGAATAGTTATTGAGTTGAT+TGG + chr1_3:70444293-70444312 None:intergenic 25.0%
! TGCATAATTCCTAAAATTGA+AGG - chr1_3:70444470-70444489 Msa0137820:three_prime_UTR 25.0%
! GCATAATTCCTAAAATTGAA+GGG - chr1_3:70444471-70444490 Msa0137820:three_prime_UTR 25.0%
! CATAATTCCTAAAATTGAAG+GGG - chr1_3:70444472-70444491 Msa0137820:three_prime_UTR 25.0%
! AACAAATATATCAAACAGGA+AGG - chr1_3:70444582-70444601 Msa0137820:three_prime_UTR 25.0%
! ACAAATATATCAAACAGGAA+GGG - chr1_3:70444583-70444602 Msa0137820:three_prime_UTR 25.0%
! TCAGCATGAGTATATATTAT+AGG - chr1_3:70445044-70445063 Msa0137820:three_prime_UTR 25.0%
! TCAAAGAAAAAAGATAATGC+GGG + chr1_3:70445090-70445109 None:intergenic 25.0%
!! AATAAATTCATTTGATGGAC+AGG - chr1_3:70445325-70445344 Msa0137820:three_prime_UTR 25.0%
!! ATAAATTCATTTGATGGACA+GGG - chr1_3:70445326-70445345 Msa0137820:three_prime_UTR 25.0%
!!! GTTGGTTTTTCAACATTATT+TGG - chr1_3:70445384-70445403 Msa0137820:three_prime_UTR 25.0%
! TTGTCCTAATTACAATACAA+GGG + chr1_3:70445448-70445467 None:intergenic 25.0%
! TTTGTCCTAATTACAATACA+AGG + chr1_3:70445449-70445468 None:intergenic 25.0%
! ATTGTAATTAGGACAAAGAT+TGG - chr1_3:70445452-70445471 Msa0137820:three_prime_UTR 25.0%
!!! CAGGTATTATTTTACCTTTT+TGG + chr1_3:70445506-70445525 None:intergenic 25.0%
! TGTGATATTTGATTACCAAA+TGG - chr1_3:70445683-70445702 Msa0137820:three_prime_UTR 25.0%
! ATGCCACAAAAAAACATAAA+CGG - chr1_3:70446012-70446031 Msa0137820:intron 25.0%
! GAGAAAAACTGAGATAAAAA+TGG + chr1_3:70446038-70446057 None:intergenic 25.0%
! TTTATTACCTGTAACAAGAT+GGG + chr1_3:70446062-70446081 None:intergenic 25.0%
! ATTTATTACCTGTAACAAGA+TGG + chr1_3:70446063-70446082 None:intergenic 25.0%
! GAATTCAGTTAAATATTGCA+TGG + chr1_3:70446097-70446116 None:intergenic 25.0%
! AAGTGAAAAGGAATCAAATT+TGG + chr1_3:70446129-70446148 None:intergenic 25.0%
!!! GCATTTTCTATCACTTTTTT+TGG - chr1_3:70446160-70446179 Msa0137820:CDS 25.0%
!!! TATCACTTTTTTTGGTGAAT+GGG - chr1_3:70446168-70446187 Msa0137820:CDS 25.0%
! GAAAATAGTCATAATCTTGA+AGG + chr1_3:70446421-70446440 None:intergenic 25.0%
!! AGATTATGACTATTTTCCTT+TGG - chr1_3:70446424-70446443 Msa0137820:intron 25.0%
! TATTAGTTGTTTATTACAGG+GGG - chr1_3:70446610-70446629 Msa0137820:intron 25.0%
! AAAAAGGTGACAAAAACATA+TGG + chr1_3:70446747-70446766 None:intergenic 25.0%
! ATTCTAATTTACTACACTAC+TGG - chr1_3:70446888-70446907 Msa0137820:intron 25.0%
! AAATGTTGAATACAGCATTT+AGG + chr1_3:70446941-70446960 None:intergenic 25.0%
! TAAATGCTGTATTCAACATT+TGG - chr1_3:70446940-70446959 Msa0137820:intron 25.0%
!! AAACCATAGACTCTTTAAAA+GGG + chr1_3:70447182-70447201 None:intergenic 25.0%
! TAAACCATAGACTCTTTAAA+AGG + chr1_3:70447183-70447202 None:intergenic 25.0%
! GACCCAAATTTAATTAATGT+AGG - chr1_3:70447232-70447251 Msa0137820:intron 25.0%
!! AATTAATGTAGGAAGTTGAT+TGG - chr1_3:70447243-70447262 Msa0137820:intron 25.0%
! ATGTGAAAGTTAGCATAAAA+AGG - chr1_3:70447381-70447400 Msa0137820:intron 25.0%
! AGGAAGTAATAAAACAAGAT+TGG - chr1_3:70447615-70447634 Msa0137820:intron 25.0%
! GGAAGTAATAAAACAAGATT+GGG - chr1_3:70447616-70447635 Msa0137820:intron 25.0%
! GAAGTAATAAAACAAGATTG+GGG - chr1_3:70447617-70447636 Msa0137820:intron 25.0%
!!! CTTTACATTCTAAAGTGAAT+TGG + chr1_3:70447818-70447837 None:intergenic 25.0%
! TAAAGTGACTAAAGTGTAAA+GGG + chr1_3:70447934-70447953 None:intergenic 25.0%
! TCAATTTATGGAAATCTTAG+TGG - chr1_3:70448025-70448044 Msa0137820:intron 25.0%
! CAATTTATGGAAATCTTAGT+GGG - chr1_3:70448026-70448045 Msa0137820:intron 25.0%
!!! GATGGATTTTTAGTTTAGAA+TGG - chr1_3:70448398-70448417 Msa0137820:intron 25.0%
! TCGTTTCTCTAATTAAAAAC+AGG + chr1_3:70448682-70448701 None:intergenic 25.0%
TGTGAATTGTTACCAGTTAA+GGG + chr1_3:70443910-70443929 None:intergenic 30.0%
AAATATGAGCTCAATTGTTC+AGG - chr1_3:70443984-70444003 Msa0137820:three_prime_UTR 30.0%
! ATTATCACCCCTTCAATTTT+AGG + chr1_3:70444482-70444501 None:intergenic 30.0%
TGATGCTTATTTCAAGATAC+TGG - chr1_3:70444664-70444683 Msa0137820:three_prime_UTR 30.0%
CAAATCTGGAAAAGAAAGAA+AGG + chr1_3:70444777-70444796 None:intergenic 30.0%
!! TGATGATTCTGAAGTTAAAC+CGG + chr1_3:70444931-70444950 None:intergenic 30.0%
ATTACGACGTTCTTATTCTT+CGG - chr1_3:70445169-70445188 Msa0137820:three_prime_UTR 30.0%
!! GTATAATCAGGTTGATATGA+GGG + chr1_3:70445252-70445271 None:intergenic 30.0%
!! TGTATAATCAGGTTGATATG+AGG + chr1_3:70445253-70445272 None:intergenic 30.0%
AACACCCTTGTATTGTAATT+AGG - chr1_3:70445441-70445460 Msa0137820:three_prime_UTR 30.0%
TAATTAGGACAAAGATTGGA+AGG - chr1_3:70445456-70445475 Msa0137820:three_prime_UTR 30.0%
AAAGATTGGAAGGCTAAAAA+TGG - chr1_3:70445466-70445485 Msa0137820:three_prime_UTR 30.0%
AGCTACAAAAGATACCAAAA+AGG - chr1_3:70445489-70445508 Msa0137820:three_prime_UTR 30.0%
CAGCACAGATTTAATTAAAC+AGG + chr1_3:70445525-70445544 None:intergenic 30.0%
! AGTAGTGCAATTGAAGATTT+TGG + chr1_3:70445852-70445871 None:intergenic 30.0%
AAAAGGAATCAAATTTGGCA+TGG + chr1_3:70446124-70446143 None:intergenic 30.0%
!!! CTATCACTTTTTTTGGTGAA+TGG - chr1_3:70446167-70446186 Msa0137820:CDS 30.0%
!!! ATCACTTTTTTTGGTGAATG+GGG - chr1_3:70446169-70446188 Msa0137820:CDS 30.0%
GTTAATGAAGAAACAAATGC+AGG + chr1_3:70446453-70446472 None:intergenic 30.0%
TAAGAAATTTGTAGCACCTT+AGG + chr1_3:70446575-70446594 None:intergenic 30.0%
TGCTACAAATTTCTTAGAAG+AGG - chr1_3:70446579-70446598 Msa0137820:intron 30.0%
! ATCTCAGATTTCTGAAAAAG+TGG - chr1_3:70446680-70446699 Msa0137820:intron 30.0%
! AGAAGTAATGGAAAACTTGA+TGG - chr1_3:70446831-70446850 Msa0137820:CDS 30.0%
GAATAGATGCAACAATTTCT+AGG - chr1_3:70446853-70446872 Msa0137820:intron 30.0%
AATGATGAAGTCTATGCTAT+TGG - chr1_3:70447030-70447049 Msa0137820:intron 30.0%
ATTGGTTAGTGATTATTCTC+AGG - chr1_3:70447048-70447067 Msa0137820:intron 30.0%
AAGATAAAGAGGTTAAGTGT+AGG + chr1_3:70447421-70447440 None:intergenic 30.0%
! AAAAACCAAGCTTGTTTGTA+TGG - chr1_3:70447656-70447675 Msa0137820:CDS 30.0%
! AAAACCAAGCTTGTTTGTAT+GGG - chr1_3:70447657-70447676 Msa0137820:CDS 30.0%
! GATTCAAAAAGTGTAAGTTG+TGG - chr1_3:70447764-70447783 Msa0137820:intron 30.0%
! TTACACTTTAGTCACTTTAG+AGG - chr1_3:70447935-70447954 Msa0137820:intron 30.0%
AAAGTGACTAAAGTGTAAAG+GGG + chr1_3:70447933-70447952 None:intergenic 30.0%
CTAAAGTGACTAAAGTGTAA+AGG + chr1_3:70447935-70447954 None:intergenic 30.0%
! TTACACTTTAGTCACTTTAG+AGG - chr1_3:70447935-70447954 Msa0137820:intron 30.0%
! ATTTTTATGCAAGCAAGCAA+GGG + chr1_3:70448087-70448106 None:intergenic 30.0%
ATCTAATTATCTCCATTGCA+AGG + chr1_3:70448305-70448324 None:intergenic 30.0%
TGCAATGGAGATAATTAGAT+TGG - chr1_3:70448305-70448324 Msa0137820:intron 30.0%
ATGGAGATAATTAGATTGGA+TGG - chr1_3:70448309-70448328 Msa0137820:intron 30.0%
!!! AGTTTTGGATAGATTAAGTC+AGG + chr1_3:70448586-70448605 None:intergenic 30.0%
AACAGGAAAAAGTCATACAA+TGG + chr1_3:70448665-70448684 None:intergenic 30.0%
GTGTGAATTGTTACCAGTTA+AGG + chr1_3:70443911-70443930 None:intergenic 35.0%
!!! TAAGACTTTTTTTGCAGCTG+CGG - chr1_3:70444149-70444168 Msa0137820:three_prime_UTR 35.0%
ACAATTCTCTCTGTTCTTGT+TGG - chr1_3:70444869-70444888 Msa0137820:intron 35.0%
AAAAGAATGCTCACCAGATT+TGG + chr1_3:70444905-70444924 None:intergenic 35.0%
TTACGACGTTCTTATTCTTC+GGG - chr1_3:70445170-70445189 Msa0137820:three_prime_UTR 35.0%
TCCTTGAAAGAGGCTATATT+TGG - chr1_3:70445205-70445224 Msa0137820:three_prime_UTR 35.0%
TCCAAATATAGCCTCTTTCA+AGG + chr1_3:70445209-70445228 None:intergenic 35.0%
AAAGAGGCTATATTTGGAGA+AGG - chr1_3:70445211-70445230 Msa0137820:three_prime_UTR 35.0%
AAGAGGCTATATTTGGAGAA+GGG - chr1_3:70445212-70445231 Msa0137820:three_prime_UTR 35.0%
TGAGATCAAAAGAGTGAACA+TGG + chr1_3:70445566-70445585 None:intergenic 35.0%
! GTTCTGTTGTTGTAGTTCTA+AGG + chr1_3:70445730-70445749 None:intergenic 35.0%
TAGGAACTTCAAATCTTGCA+AGG - chr1_3:70445814-70445833 Msa0137820:exon 35.0%
!!! TGGCCGTTTATGTTTTTTTG+TGG + chr1_3:70446018-70446037 None:intergenic 35.0%
! GTTTTCTAACTATCCTTACC+TGG + chr1_3:70446204-70446223 None:intergenic 35.0%
TACACTCTTTCACATTTGCA+AGG + chr1_3:70446509-70446528 None:intergenic 35.0%
AGAGTGTAGTGTTTGTTTAG+AGG - chr1_3:70446521-70446540 Msa0137820:CDS 35.0%
ACAGATATGTCTTATGCCTA+AGG - chr1_3:70446556-70446575 Msa0137820:intron 35.0%
TTCATCATTCGACTGAAGAA+AGG + chr1_3:70447019-70447038 None:intergenic 35.0%
!! TCACCCTTTTAAAGAGTCTA+TGG - chr1_3:70447176-70447195 Msa0137820:intron 35.0%
ATTGAGAGAGGAAGATAAAG+AGG + chr1_3:70447432-70447451 None:intergenic 35.0%
ATGCATCAATAGATTGAGAG+AGG + chr1_3:70447444-70447463 None:intergenic 35.0%
GAATTTCCAATGCTTATTGC+TGG - chr1_3:70447468-70447487 Msa0137820:intron 35.0%
TTAATTCATTATTTCCCCCC+TGG - chr1_3:70447538-70447557 Msa0137820:intron 35.0%
TAATTCATTATTTCCCCCCT+GGG - chr1_3:70447539-70447558 Msa0137820:intron 35.0%
TTTATTACTTCCTACAACCC+AGG + chr1_3:70447608-70447627 None:intergenic 35.0%
AATAAAACAAGATTGGGGTG+AGG - chr1_3:70447622-70447641 Msa0137820:intron 35.0%
! GTGCTTGAATGCTTGATTTT+AGG - chr1_3:70447682-70447701 Msa0137820:CDS 35.0%
TTGAATCTGTCACAACATAC+AGG + chr1_3:70447751-70447770 None:intergenic 35.0%
TTGTGGTTGCAATACCTATA+TGG - chr1_3:70447781-70447800 Msa0137820:intron 35.0%
TGTGGTTGCAATACCTATAT+GGG - chr1_3:70447782-70447801 Msa0137820:intron 35.0%
! TCTAAAGTGAATTGGGAAGT+TGG + chr1_3:70447810-70447829 None:intergenic 35.0%
! CATTTTTATGCAAGCAAGCA+AGG + chr1_3:70448088-70448107 None:intergenic 35.0%
TAAAAATGCCTTTCCTTCAC+TGG - chr1_3:70448100-70448119 Msa0137820:intron 35.0%
! AATGCCATGCTACTTAAGTT+GGG + chr1_3:70448128-70448147 None:intergenic 35.0%
! AAATGCCATGCTACTTAAGT+TGG + chr1_3:70448129-70448148 None:intergenic 35.0%
TTGTGTGACATGTCATCTTA+TGG + chr1_3:70448231-70448250 None:intergenic 35.0%
GAATCATGCAAACCTAATCT+GGG - chr1_3:70448252-70448271 Msa0137820:intron 35.0%
CCATTGCAAGGAAAAGATTA+TGG + chr1_3:70448293-70448312 None:intergenic 35.0%
! CCATAATCTTTTCCTTGCAA+TGG - chr1_3:70448290-70448309 Msa0137820:intron 35.0%
! AGGTTTTCTAAGCTACTTGA+GGG + chr1_3:70448516-70448535 None:intergenic 35.0%
! TAGGTTTTCTAAGCTACTTG+AGG + chr1_3:70448517-70448536 None:intergenic 35.0%
TTGGATAGATTAAGTCAGGT+GGG + chr1_3:70448582-70448601 None:intergenic 35.0%
TTTGGATAGATTAAGTCAGG+TGG + chr1_3:70448583-70448602 None:intergenic 35.0%
GATGTACACAAGTTAACTGT+TGG + chr1_3:70448912-70448931 None:intergenic 35.0%
!! CAGTTAACTTGTGTACATCT+AGG - chr1_3:70448913-70448932 Msa0137820:five_prime_UTR 35.0%
TATCAAACAGGAAGGGCTAA+TGG - chr1_3:70444590-70444609 Msa0137820:three_prime_UTR 40.0%
TTCTTACTATCAAAGCTGCG+AGG + chr1_3:70444727-70444746 None:intergenic 40.0%
TTCTCTCTGTTCTTGTTGGT+TGG - chr1_3:70444873-70444892 Msa0137820:intron 40.0%
! TCTCTCTGTTCTTGTTGGTT+GGG - chr1_3:70444874-70444893 Msa0137820:intron 40.0%
!!! TGGTGAGCATTCTTTTTTGC+CGG - chr1_3:70444909-70444928 Msa0137820:intron 40.0%
TGTTATCTTATCGTGACTCG+TGG - chr1_3:70444984-70445003 Msa0137820:three_prime_UTR 40.0%
TTATGCAGATCTCTCGTAGT+TGG - chr1_3:70445137-70445156 Msa0137820:three_prime_UTR 40.0%
TATGCAGATCTCTCGTAGTT+GGG - chr1_3:70445138-70445157 Msa0137820:three_prime_UTR 40.0%
! ACGTTCTTATTCTTCGGGTT+TGG - chr1_3:70445175-70445194 Msa0137820:three_prime_UTR 40.0%
! TATTCTTCGGGTTTGGACTT+TGG - chr1_3:70445182-70445201 Msa0137820:three_prime_UTR 40.0%
GATCAAAAGAGTGAACATGG+AGG + chr1_3:70445563-70445582 None:intergenic 40.0%
TTTCTCTCCCATCTTGTTAC+AGG - chr1_3:70446052-70446071 Msa0137820:intron 40.0%
GATAGAAAATGCCTGCAGAA+TGG + chr1_3:70446152-70446171 None:intergenic 40.0%
TTTGTTCAGTTGGCTACCAT+AGG - chr1_3:70446292-70446311 Msa0137820:intron 40.0%
TTCATCTGCAGCTAAACCTA+TGG + chr1_3:70446311-70446330 None:intergenic 40.0%
AAACAAATGCAGGCAACCAA+AGG + chr1_3:70446443-70446462 None:intergenic 40.0%
TGTACTTCTGCTGCTGTTAT+CGG - chr1_3:70446642-70446661 Msa0137820:intron 40.0%
TGCTGTATTCAACATTTGGC+AGG - chr1_3:70446944-70446963 Msa0137820:intron 40.0%
GTATTCAACATTTGGCAGGT+TGG - chr1_3:70446948-70446967 Msa0137820:intron 40.0%
CGACTGAAGAAAGGAATGAT+TGG + chr1_3:70447010-70447029 None:intergenic 40.0%
! AGCAAACATGCTTGTTACAG+TGG - chr1_3:70447094-70447113 Msa0137820:intron 40.0%
CTTGTTACAGTGGTTGAGAT+TGG - chr1_3:70447104-70447123 Msa0137820:intron 40.0%
! AGAATGAAAGCTTTGACCCA+AGG + chr1_3:70447154-70447173 None:intergenic 40.0%
ACTGCAAGTACGTGTTGAAA+AGG + chr1_3:70447275-70447294 None:intergenic 40.0%
TCAACACGTACTTGCAGTAA+CGG - chr1_3:70447277-70447296 Msa0137820:intron 40.0%
!! TTGCAGTAACGGATTCTCTA+TGG - chr1_3:70447288-70447307 Msa0137820:intron 40.0%
!! TGCAGTAACGGATTCTCTAT+GGG - chr1_3:70447289-70447308 Msa0137820:intron 40.0%
! AAGAGAGTTTTCCCTTGACA+GGG - chr1_3:70447341-70447360 Msa0137820:intron 40.0%
TTAAGTGTAGGCACATGGAA+TGG + chr1_3:70447409-70447428 None:intergenic 40.0%
TTTCCAATGCTTATTGCTGG+TGG - chr1_3:70447471-70447490 Msa0137820:intron 40.0%
ATTCCACCAGCAATAAGCAT+TGG + chr1_3:70447477-70447496 None:intergenic 40.0%
ATGGTGTCTAAGGACTAAGT+TGG - chr1_3:70447562-70447581 Msa0137820:intron 40.0%
ACAACCCATACAAACAAGCT+TGG + chr1_3:70447664-70447683 None:intergenic 40.0%
!! GGTCACAATGCAAGAGTATT+GGG + chr1_3:70447716-70447735 None:intergenic 40.0%
! AGGTCACAATGCAAGAGTAT+TGG + chr1_3:70447717-70447736 None:intergenic 40.0%
GAGGATTCAAATCCCCTATA+TGG - chr1_3:70447990-70448009 Msa0137820:intron 40.0%
CGAATCATGCAAACCTAATC+TGG - chr1_3:70448251-70448270 Msa0137820:intron 40.0%
AAACCTAATCTGGGTAGACT+TGG - chr1_3:70448261-70448280 Msa0137820:intron 40.0%
! TGGTGATCACTTGGATTTTG+AGG + chr1_3:70448484-70448503 None:intergenic 40.0%
TTTCTAAGCTACTTGAGGGT+AGG + chr1_3:70448512-70448531 None:intergenic 40.0%
GCTCATTCAAATCTACGACA+GGG + chr1_3:70448637-70448656 None:intergenic 40.0%
TGCTCATTCAAATCTACGAC+AGG + chr1_3:70448638-70448657 None:intergenic 40.0%
!! TGTTGGAGTATTGTGTACGA+GGG + chr1_3:70448895-70448914 None:intergenic 40.0%
TGGTTCGTTCAACCCTTAAC+TGG - chr1_3:70443895-70443914 Msa0137820:three_prime_UTR 45.0%
!! ATGACCGTTCTCTCTGAGAT+CGG - chr1_3:70444123-70444142 Msa0137820:three_prime_UTR 45.0%
ATCACCGATCTCAGAGAGAA+CGG + chr1_3:70444130-70444149 None:intergenic 45.0%
AGAGTGTGATATCTGAGCTG+AGG + chr1_3:70444229-70444248 None:intergenic 45.0%
TGGACTTTGGTCCTTGAAAG+AGG - chr1_3:70445195-70445214 Msa0137820:three_prime_UTR 45.0%
! TTTGATGGACAGGGAATCAG+AGG - chr1_3:70445335-70445354 Msa0137820:three_prime_UTR 45.0%
GAAGTTGAAGCTGAACTGGT+TGG - chr1_3:70445366-70445385 Msa0137820:three_prime_UTR 45.0%
ATGACCGCACATCGTCTTAA+GGG + chr1_3:70445615-70445634 None:intergenic 45.0%
TATGACCGCACATCGTCTTA+AGG + chr1_3:70445616-70445635 None:intergenic 45.0%
CCTGCAGAATGGAAGTGAAA+AGG + chr1_3:70446141-70446160 None:intergenic 45.0%
! CCTTTTCACTTCCATTCTGC+AGG - chr1_3:70446138-70446157 Msa0137820:intron 45.0%
GCTGCAGATGAAAACCCATT+TGG - chr1_3:70446319-70446338 Msa0137820:intron 45.0%
AGATGAAAACCCATTTGGCG+TGG - chr1_3:70446324-70446343 Msa0137820:intron 45.0%
TTGGAGGGATTCTGTGAGTT+TGG - chr1_3:70446350-70446369 Msa0137820:intron 45.0%
! ATGAAAGCTTTGACCCAAGG+TGG + chr1_3:70447151-70447170 None:intergenic 45.0%
! GAAGAGAGTTTTCCCTTGAC+AGG - chr1_3:70447340-70447359 Msa0137820:intron 45.0%
! AGAGAGTTTTCCCTTGACAG+GGG - chr1_3:70447342-70447361 Msa0137820:intron 45.0%
TTTCACACAACCCCTGTCAA+GGG + chr1_3:70447355-70447374 None:intergenic 45.0%
ATTTCACACAACCCCTGTCA+AGG + chr1_3:70447356-70447375 None:intergenic 45.0%
AGAGGTTAAGTGTAGGCACA+TGG + chr1_3:70447414-70447433 None:intergenic 45.0%
AAGATTGGGGTGAGGTAGAA+GGG - chr1_3:70447630-70447649 Msa0137820:CDS 45.0%
TCACAACATACAGGCATGGA+CGG + chr1_3:70447742-70447761 None:intergenic 45.0%
TCTGTCACAACATACAGGCA+TGG + chr1_3:70447746-70447765 None:intergenic 45.0%
TGGGAAGTTGGATCCCATAT+AGG + chr1_3:70447798-70447817 None:intergenic 45.0%
TTATGCAAGCAAGCAAGGGA+TGG + chr1_3:70448083-70448102 None:intergenic 45.0%
TCTCACTTGCAGGATCTACT+TGG + chr1_3:70448198-70448217 None:intergenic 45.0%
CTTCTGTCAATCTCACTTGC+AGG + chr1_3:70448208-70448227 None:intergenic 45.0%
GAACCAAGTCTACCCAGATT+AGG + chr1_3:70448267-70448286 None:intergenic 45.0%
TAGGTGAAGTGGTGATCACT+TGG + chr1_3:70448493-70448512 None:intergenic 45.0%
! CGAGTGGATAGTGCAAGTTT+TGG + chr1_3:70448601-70448620 None:intergenic 45.0%
TATCCACTCGCTCTAATCTC+AGG - chr1_3:70448611-70448630 Msa0137820:intron 45.0%
!! GTTGGAGTATTGTGTACGAG+GGG + chr1_3:70448894-70448913 None:intergenic 45.0%
!! CTGTTGGAGTATTGTGTACG+AGG + chr1_3:70448896-70448915 None:intergenic 45.0%
GTGTACATCTAGGCTCTGTT+TGG - chr1_3:70448923-70448942 Msa0137820:five_prime_UTR 45.0%
GATCTCAGAGAGAACGGTCA+TGG + chr1_3:70444124-70444143 None:intergenic 50.0%
ATCTGAGCTGAGGTAGCTTG+AGG + chr1_3:70444219-70444238 None:intergenic 50.0%
!! CTGTTAAGACAAGGCGTCGT+GGG + chr1_3:70444700-70444719 None:intergenic 50.0%
CGAGGCAACCTGTTAAGACA+AGG + chr1_3:70444709-70444728 None:intergenic 50.0%
GGCTGAAGTTGAAGCTGAAC+TGG - chr1_3:70445362-70445381 Msa0137820:three_prime_UTR 50.0%
CAGTCCCTTAAGACGATGTG+CGG - chr1_3:70445608-70445627 Msa0137820:three_prime_UTR 50.0%
AACCCATTTGGCGTGGTTCT+TGG - chr1_3:70446331-70446350 Msa0137820:intron 50.0%
CTCCAAGAACCACGCCAAAT+GGG + chr1_3:70446336-70446355 None:intergenic 50.0%
CATTTGGCGTGGTTCTTGGA+GGG - chr1_3:70446335-70446354 Msa0137820:intron 50.0%
ACTTCTGCTGCTGTTATCGG+AGG - chr1_3:70446645-70446664 Msa0137820:intron 50.0%
CTTCTGCTGCTGTTATCGGA+GGG - chr1_3:70446646-70446665 Msa0137820:intron 50.0%
! ATTTGGCAGGTTGGACTCTC+AGG - chr1_3:70446957-70446976 Msa0137820:intron 50.0%
! GGTGGAAAGGCAAGCTCTTT+TGG + chr1_3:70447133-70447152 None:intergenic 50.0%
AAGAGCTTGCCTTTCCACCT+TGG - chr1_3:70447134-70447153 Msa0137820:intron 50.0%
AGAGCTTGCCTTTCCACCTT+GGG - chr1_3:70447135-70447154 Msa0137820:intron 50.0%
! AGCTTTGACCCAAGGTGGAA+AGG + chr1_3:70447146-70447165 None:intergenic 50.0%
TCATTATTTCCCCCCTGGGA+TGG - chr1_3:70447543-70447562 Msa0137820:intron 50.0%
AGTCCTTAGACACCATCCCA+GGG + chr1_3:70447558-70447577 None:intergenic 50.0%
TAGTCCTTAGACACCATCCC+AGG + chr1_3:70447559-70447578 None:intergenic 50.0%
ACTGTGAAAATGACCCTGCC+TGG - chr1_3:70447587-70447606 Msa0137820:intron 50.0%
CTGTGAAAATGACCCTGCCT+GGG - chr1_3:70447588-70447607 Msa0137820:intron 50.0%
TACTTCCTACAACCCAGGCA+GGG + chr1_3:70447603-70447622 None:intergenic 50.0%
TTACTTCCTACAACCCAGGC+AGG + chr1_3:70447604-70447623 None:intergenic 50.0%
CAAGATTGGGGTGAGGTAGA+AGG - chr1_3:70447629-70447648 Msa0137820:CDS 50.0%
AGATTGGGGTGAGGTAGAAG+GGG - chr1_3:70447631-70447650 Msa0137820:CDS 50.0%
ACATACAGGCATGGACGGAA+AGG + chr1_3:70447737-70447756 None:intergenic 50.0%
TGGCTTGATGTTGGGGACAT+CGG + chr1_3:70448063-70448082 None:intergenic 50.0%
CAAGGGATGGCTTGATGTTG+GGG + chr1_3:70448070-70448089 None:intergenic 50.0%
GCAAGGGATGGCTTGATGTT+GGG + chr1_3:70448071-70448090 None:intergenic 50.0%
AGCAAGGGATGGCTTGATGT+TGG + chr1_3:70448072-70448091 None:intergenic 50.0%
!! CTTAAGTTGGGCTCCAGTGA+AGG + chr1_3:70448116-70448135 None:intergenic 50.0%
GGAGCCCAACTTAAGTAGCA+TGG - chr1_3:70448121-70448140 Msa0137820:CDS 50.0%
CTACTTGAGGGTAGGTGAAG+TGG + chr1_3:70448504-70448523 None:intergenic 50.0%
!! CCTGTTAAGACAAGGCGTCG+TGG + chr1_3:70444701-70444720 None:intergenic 55.0%
CCACGACGCCTTGTCTTAAC+AGG - chr1_3:70444698-70444717 Msa0137820:three_prime_UTR 55.0%
TGGTTGGGCTGCTCCAAATC+TGG - chr1_3:70444889-70444908 Msa0137820:intron 55.0%
GGACAGGGAATCAGAGGAGT+TGG - chr1_3:70445341-70445360 Msa0137820:three_prime_UTR 55.0%
TGAATGGGGTGACAAGAGCC+AGG - chr1_3:70446183-70446202 Msa0137820:CDS 55.0%
CCTCCAAGAACCACGCCAAA+TGG + chr1_3:70446337-70446356 None:intergenic 55.0%
CCATTTGGCGTGGTTCTTGG+AGG - chr1_3:70446334-70446353 Msa0137820:intron 55.0%
TCCTTAGACACCATCCCAGG+GGG + chr1_3:70447556-70447575 None:intergenic 55.0%
GTCCTTAGACACCATCCCAG+GGG + chr1_3:70447557-70447576 None:intergenic 55.0%
AATGACCCTGCCTGGGTTGT+AGG - chr1_3:70447595-70447614 Msa0137820:intron 55.0%
GGCTTGATGTTGGGGACATC+GGG + chr1_3:70448062-70448081 None:intergenic 55.0%
GTTGGGCTCCAGTGAAGGAA+AGG + chr1_3:70448111-70448130 None:intergenic 55.0%
GGGGTGACAAGAGCCAGGTA+AGG - chr1_3:70446188-70446207 Msa0137820:CDS 60.0%
! TGGCAGGTTGGACTCTCAGG+TGG - chr1_3:70446960-70446979 Msa0137820:intron 60.0%
CCTTAGACACCATCCCAGGG+GGG + chr1_3:70447555-70447574 None:intergenic 60.0%
GGGCCTGAGATTAGAGCGAG+TGG + chr1_3:70448617-70448636 None:intergenic 60.0%
CCCCCCTGGGATGGTGTCTA+AGG - chr1_3:70447552-70447571 Msa0137820:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 70443888 70448970 70443888 ID=Msa0137820;Name=Msa0137820
chr1_3 mRNA 70443888 70448970 70443888 ID=Msa0137820-mRNA-1;Parent=Msa0137820;Name=Msa0137820-mRNA-1;_AED=0.23;_eAED=0.23;_QI=100|1|1|1|0.75|0.76|13|1900|228
chr1_3 exon 70443888 70444881 70443888 ID=Msa0137820-mRNA-1:exon:24451;Parent=Msa0137820-mRNA-1
chr1_3 exon 70444918 70445892 70444918 ID=Msa0137820-mRNA-1:exon:24450;Parent=Msa0137820-mRNA-1
chr1_3 exon 70446157 70446229 70446157 ID=Msa0137820-mRNA-1:exon:24449;Parent=Msa0137820-mRNA-1
chr1_3 exon 70446496 70446557 70446496 ID=Msa0137820-mRNA-1:exon:24448;Parent=Msa0137820-mRNA-1
chr1_3 exon 70446654 70446698 70446654 ID=Msa0137820-mRNA-1:exon:24447;Parent=Msa0137820-mRNA-1
chr1_3 exon 70446785 70446853 70446785 ID=Msa0137820-mRNA-1:exon:24446;Parent=Msa0137820-mRNA-1
chr1_3 exon 70447348 70447395 70447348 ID=Msa0137820-mRNA-1:exon:24445;Parent=Msa0137820-mRNA-1
chr1_3 exon 70447475 70447511 70447475 ID=Msa0137820-mRNA-1:exon:24444;Parent=Msa0137820-mRNA-1
chr1_3 exon 70447625 70447713 70447625 ID=Msa0137820-mRNA-1:exon:24443;Parent=Msa0137820-mRNA-1
chr1_3 exon 70447948 70447995 70447948 ID=Msa0137820-mRNA-1:exon:24442;Parent=Msa0137820-mRNA-1
chr1_3 exon 70448119 70448178 70448119 ID=Msa0137820-mRNA-1:exon:24441;Parent=Msa0137820-mRNA-1
chr1_3 exon 70448688 70448756 70448688 ID=Msa0137820-mRNA-1:exon:24440;Parent=Msa0137820-mRNA-1
chr1_3 exon 70448853 70448970 70448853 ID=Msa0137820-mRNA-1:exon:24439;Parent=Msa0137820-mRNA-1
chr1_3 five_prime_UTR 70448871 70448970 70448871 ID=Msa0137820-mRNA-1:five_prime_utr;Parent=Msa0137820-mRNA-1
chr1_3 CDS 70448853 70448870 70448853 ID=Msa0137820-mRNA-1:cds;Parent=Msa0137820-mRNA-1
chr1_3 CDS 70448688 70448756 70448688 ID=Msa0137820-mRNA-1:cds;Parent=Msa0137820-mRNA-1
chr1_3 CDS 70448119 70448178 70448119 ID=Msa0137820-mRNA-1:cds;Parent=Msa0137820-mRNA-1
chr1_3 CDS 70447948 70447995 70447948 ID=Msa0137820-mRNA-1:cds;Parent=Msa0137820-mRNA-1
chr1_3 CDS 70447625 70447713 70447625 ID=Msa0137820-mRNA-1:cds;Parent=Msa0137820-mRNA-1
chr1_3 CDS 70447475 70447511 70447475 ID=Msa0137820-mRNA-1:cds;Parent=Msa0137820-mRNA-1
chr1_3 CDS 70447348 70447395 70447348 ID=Msa0137820-mRNA-1:cds;Parent=Msa0137820-mRNA-1
chr1_3 CDS 70446785 70446853 70446785 ID=Msa0137820-mRNA-1:cds;Parent=Msa0137820-mRNA-1
chr1_3 CDS 70446654 70446698 70446654 ID=Msa0137820-mRNA-1:cds;Parent=Msa0137820-mRNA-1
chr1_3 CDS 70446496 70446557 70446496 ID=Msa0137820-mRNA-1:cds;Parent=Msa0137820-mRNA-1
chr1_3 CDS 70446157 70446229 70446157 ID=Msa0137820-mRNA-1:cds;Parent=Msa0137820-mRNA-1
chr1_3 CDS 70445824 70445892 70445824 ID=Msa0137820-mRNA-1:cds;Parent=Msa0137820-mRNA-1
chr1_3 three_prime_UTR 70444918 70445823 70444918 ID=Msa0137820-mRNA-1:three_prime_utr;Parent=Msa0137820-mRNA-1
chr1_3 three_prime_UTR 70443888 70444881 70443888 ID=Msa0137820-mRNA-1:three_prime_utr;Parent=Msa0137820-mRNA-1
Gene Sequence

>Msa0137820

ATGAGCTCAATTGTTCAGGGTTTTACAAAGTCACTCGCCATGACCGTTCTCTCTGAGATCGGTGATAAGACTTTTTTTGCAGCTGCGATACTGGCTATGCGACACCCACGACGCCTTGTCTTAACAGGTTGCCTCGCAGCTTTGATAGTGATGACAATTCTCTCTGTTCTTGTTGGTTGGGCTGCTCCAAATCTGATCTCTCGTAGTTGGGCTCATCACATTACGACGTTCTTATTCTTCGGGTTTGGACTTTGGTCCTTGAAAGAGGCTATATTTGGAGAAGGGGAATCAGAGGAGTTGGCTGAAGTTGAAGCTGAACTGGACAAAGATTGGAAGGCTAAAAATGGAGCTACAAAAGATACCAAAAAGGTTGATGATGCCACAAAAAAACATAAACGGCCATTTTTATCTCAGTTTTTCTCTCCCATCTTGTTACAGGCATTTTCTATCACTTTTTTTGGTGAATGGGGTGACAAGAGCCAGTTGGCTACCATAGGTTTAGCTGCAGATGAAAACCCATTTGGCGTGGTTCTTGGAGGGATTCTGGGGCACGCGTTGTGTACTTCTGCTGCTGTTATCGGAGGGAAGAGTTTAGCATCTCAGATTTCTGAAAAAGTGGTTGGACTCTCAGGTGGAATTCTTTTTATTGTTTTTGGTATCCAATCATTCCTTTCTTCAGTCGAATGA
Protein sequence

>Msa0137820

MSSIVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLTGCLAALIVMTILSVLVGWAAPNLISRSWAHHITTFLFFGFGLWSLKEAIFGEGESEELAEVEAELDKDWKAKNGATKDTKKVDDATKKHKRPFLSQFFSPILLQAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGILGHALCTSAAVIGGKSLASQISEKVVGLSGGILFIVFGIQSFLSSVE*