Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0833310 | GAU20710.1 | 73.016 | 126 | 32 | 1 | 1 | 126 | 15 | 138 | 9.92e-59 | 192 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0833310 | sp|Q84W04|CNIH4_ARATH | 59.184 | 98 | 38 | 1 | 1 | 96 | 1 | 98 | 2.88e-34 | 122 |
| Msa0833310 | sp|Q84W04|CNIH4_ARATH | 51.190 | 84 | 34 | 3 | 144 | 220 | 54 | 137 | 1.90e-17 | 78.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0833310 | B7FJU3 | 81.818 | 66 | 11 | 1 | 156 | 220 | 72 | 137 | 8.24e-26 | 107 |
| Msa0833310 | B7FJU3 | 89.362 | 94 | 10 | 0 | 1 | 94 | 1 | 94 | 7.39e-52 | 173 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027260 | Msa0833310 | 0.817072 | 3.985983e-52 | -8.615850e-47 |
| Msa0032260 | Msa0833310 | 0.819478 | 1.137145e-52 | -8.615850e-47 |
| Msa0047980 | Msa0833310 | 0.839814 | 1.264775e-57 | -8.615850e-47 |
| Msa0064350 | Msa0833310 | 0.826483 | 2.646870e-54 | -8.615850e-47 |
| Msa0084650 | Msa0833310 | 0.804472 | 2.125004e-49 | -8.615850e-47 |
| Msa0084940 | Msa0833310 | 0.809810 | 1.574410e-50 | -8.615850e-47 |
| Msa0091570 | Msa0833310 | 0.832347 | 9.956751e-56 | -8.615850e-47 |
| Msa0094920 | Msa0833310 | 0.801436 | 9.014343e-49 | -8.615850e-47 |
| Msa0094950 | Msa0833310 | 0.802373 | 5.784422e-49 | -8.615850e-47 |
| Msa0095010 | Msa0833310 | 0.827113 | 1.871285e-54 | -8.615850e-47 |
| Msa0115390 | Msa0833310 | 0.830030 | 3.695046e-55 | -8.615850e-47 |
| Msa0610390 | Msa0833310 | 0.811356 | 7.294350e-51 | -8.615850e-47 |
| Msa0615870 | Msa0833310 | 0.801523 | 8.648946e-49 | -8.615850e-47 |
| Msa0623700 | Msa0833310 | 0.817619 | 3.002610e-52 | -8.615850e-47 |
| Msa0625280 | Msa0833310 | 0.839457 | 1.566321e-57 | -8.615850e-47 |
| Msa0647490 | Msa0833310 | 0.808239 | 3.414520e-50 | -8.615850e-47 |
| Msa0650190 | Msa0833310 | 0.832969 | 6.978033e-56 | -8.615850e-47 |
| Msa0650920 | Msa0833310 | 0.827221 | 1.763501e-54 | -8.615850e-47 |
| Msa0661300 | Msa0833310 | 0.809023 | 2.322405e-50 | -8.615850e-47 |
| Msa0663900 | Msa0833310 | 0.829840 | 4.109426e-55 | -8.615850e-47 |
| Msa0670270 | Msa0833310 | 0.833241 | 5.971669e-56 | -8.615850e-47 |
| Msa0673010 | Msa0833310 | -0.803667 | 3.124372e-49 | -8.615850e-47 |
| Msa0673470 | Msa0833310 | 0.820391 | 7.030328e-53 | -8.615850e-47 |
| Msa0680240 | Msa0833310 | 0.800709 | 1.269145e-48 | -8.615850e-47 |
| Msa0687630 | Msa0833310 | 0.839595 | 1.442238e-57 | -8.615850e-47 |
| Msa0690160 | Msa0833310 | 0.819629 | 1.050670e-52 | -8.615850e-47 |
| Msa0692840 | Msa0833310 | 0.813732 | 2.205564e-51 | -8.615850e-47 |
| Msa0692940 | Msa0833310 | 0.831226 | 1.882198e-55 | -8.615850e-47 |
| Msa0696450 | Msa0833310 | 0.808163 | 3.544643e-50 | -8.615850e-47 |
| Msa0706960 | Msa0833310 | 0.813038 | 3.133371e-51 | -8.615850e-47 |
| Msa0711490 | Msa0833310 | 0.803716 | 3.051886e-49 | -8.615850e-47 |
| Msa0713820 | Msa0833310 | 0.826034 | 3.384167e-54 | -8.615850e-47 |
| Msa0718740 | Msa0833310 | 0.800451 | 1.432674e-48 | -8.615850e-47 |
| Msa0727150 | Msa0833310 | 0.808565 | 2.909752e-50 | -8.615850e-47 |
| Msa0733480 | Msa0833310 | 0.807379 | 5.203354e-50 | -8.615850e-47 |
| Msa0755340 | Msa0833310 | 0.807283 | 5.452914e-50 | -8.615850e-47 |
| Msa0756060 | Msa0833310 | 0.808652 | 2.787301e-50 | -8.615850e-47 |
| Msa0763070 | Msa0833310 | 0.801260 | 9.791745e-49 | -8.615850e-47 |
| Msa0771720 | Msa0833310 | 0.811255 | 7.671123e-51 | -8.615850e-47 |
| Msa0774540 | Msa0833310 | 0.824834 | 6.513117e-54 | -8.615850e-47 |
| Msa0776220 | Msa0833310 | 0.805861 | 1.088113e-49 | -8.615850e-47 |
| Msa0777050 | Msa0833310 | 0.804156 | 2.472932e-49 | -8.615850e-47 |
| Msa0787750 | Msa0833310 | 0.819139 | 1.358577e-52 | -8.615850e-47 |
| Msa0792090 | Msa0833310 | 0.801880 | 7.306887e-49 | -8.615850e-47 |
| Msa0797120 | Msa0833310 | 0.802795 | 4.735072e-49 | -8.615850e-47 |
| Msa0797750 | Msa0833310 | 0.829555 | 4.822179e-55 | -8.615850e-47 |
| Msa0805500 | Msa0833310 | 0.807025 | 6.183536e-50 | -8.615850e-47 |
| Msa0806920 | Msa0833310 | 0.805485 | 1.305068e-49 | -8.615850e-47 |
| Msa0812140 | Msa0833310 | 0.804525 | 2.072192e-49 | -8.615850e-47 |
| Msa0813720 | Msa0833310 | 0.800939 | 1.139069e-48 | -8.615850e-47 |
| Msa0820990 | Msa0833310 | 0.802918 | 4.466183e-49 | -8.615850e-47 |
| Msa0833310 | Msa0835280 | 0.830201 | 3.355997e-55 | -8.615850e-47 |
| Msa0833310 | Msa0837660 | 0.809288 | 2.037283e-50 | -8.615850e-47 |
| Msa0833310 | Msa0842830 | 0.835425 | 1.690546e-56 | -8.615850e-47 |
| Msa0833310 | Msa0847080 | 0.817481 | 3.225326e-52 | -8.615850e-47 |
| Msa0833310 | Msa0863870 | 0.802171 | 6.366910e-49 | -8.615850e-47 |
| Msa0833310 | Msa0877410 | 0.808696 | 2.728040e-50 | -8.615850e-47 |
| Msa0833310 | Msa0900630 | 0.820979 | 5.150667e-53 | -8.615850e-47 |
| Msa0833310 | Msa0926460 | 0.813614 | 2.341318e-51 | -8.615850e-47 |
| Msa0833310 | Msa0965860 | 0.810352 | 1.203213e-50 | -8.615850e-47 |
| Msa0833310 | Msa0971020 | 0.828934 | 6.822715e-55 | -8.615850e-47 |
| Msa0833310 | Msa0974530 | 0.814507 | 1.487557e-51 | -8.615850e-47 |
| Msa0833310 | Msa0974810 | 0.843868 | 1.075491e-58 | -8.615850e-47 |
| Msa0833310 | Msa1012430 | 0.801216 | 9.995485e-49 | -8.615850e-47 |
| Msa0833310 | Msa1013040 | 0.814238 | 1.705943e-51 | -8.615850e-47 |
| Msa0833310 | Msa1019260 | 0.810846 | 9.406355e-51 | -8.615850e-47 |
| Msa0833310 | Msa1023180 | 0.829901 | 3.971348e-55 | -8.615850e-47 |
| Msa0833310 | Msa1043050 | 0.829215 | 5.832183e-55 | -8.615850e-47 |
| Msa0833310 | Msa1060220 | 0.801714 | 7.905448e-49 | -8.615850e-47 |
| Msa0833310 | Msa1084470 | 0.807545 | 4.797362e-50 | -8.615850e-47 |
| Msa0833310 | Msa1126510 | 0.822335 | 2.502370e-53 | -8.615850e-47 |
| Msa0833310 | Msa1126770 | 0.822475 | 2.322642e-53 | -8.615850e-47 |
| Msa0833310 | Msa1134110 | 0.813571 | 2.393322e-51 | -8.615850e-47 |
| Msa0833310 | Msa1143840 | 0.808369 | 3.203357e-50 | -8.615850e-47 |
| Msa0833310 | Msa1150710 | 0.834292 | 3.261845e-56 | -8.615850e-47 |
| Msa0833310 | Msa1166330 | 0.815397 | 9.441323e-52 | -8.615850e-47 |
| Msa0833310 | Msa1166340 | 0.812814 | 3.508637e-51 | -8.615850e-47 |
| Msa0833310 | Msa1166860 | 0.817716 | 2.855053e-52 | -8.615850e-47 |
| Msa0833310 | Msa1171870 | 0.820105 | 8.178700e-53 | -8.615850e-47 |
| Msa0833310 | Msa1204250 | 0.822572 | 2.205161e-53 | -8.615850e-47 |
| Msa0833310 | Msa1217830 | 0.824042 | 1.000042e-53 | -8.615850e-47 |
| Msa0833310 | Msa1267260 | 0.822023 | 2.956746e-53 | -8.615850e-47 |
| Msa0833310 | Msa1269300 | 0.803883 | 2.818659e-49 | -8.615850e-47 |
| Msa0833310 | Msa1290190 | 0.818863 | 1.570050e-52 | -8.615850e-47 |
| Msa0833310 | Msa1293510 | 0.802101 | 6.582351e-49 | -8.615850e-47 |
| Msa0833310 | Msa1304820 | 0.823420 | 1.398761e-53 | -8.615850e-47 |
| Msa0833310 | Msa1306430 | 0.822781 | 1.971653e-53 | -8.615850e-47 |
| Msa0833310 | Msa1307950 | 0.817541 | 3.126806e-52 | -8.615850e-47 |
| Msa0833310 | Msa1321630 | 0.806483 | 8.049814e-50 | -8.615850e-47 |
| Msa0833310 | Msa1333110 | 0.821677 | 3.556164e-53 | -8.615850e-47 |
| Msa0833310 | Msa1335940 | 0.807736 | 4.370436e-50 | -8.615850e-47 |
| Msa0833310 | Msa1336950 | 0.800524 | 1.384042e-48 | -8.615850e-47 |
| Msa0833310 | Msa1340020 | 0.833474 | 5.223288e-56 | -8.615850e-47 |
| Msa0833310 | Msa1344850 | 0.807906 | 4.019754e-50 | -8.615850e-47 |
| Msa0833310 | Msa1361520 | 0.829729 | 4.374371e-55 | -8.615850e-47 |
| Msa0833310 | Msa1365150 | 0.813710 | 2.230474e-51 | -8.615850e-47 |
| Msa0833310 | Msa1367880 | 0.806927 | 6.486284e-50 | -8.615850e-47 |
| Msa0833310 | Msa1370860 | 0.804340 | 2.264257e-49 | -8.615850e-47 |
| Msa0833310 | Msa1372580 | 0.801102 | 1.054989e-48 | -8.615850e-47 |
| Msa0833310 | Msa1379760 | 0.812001 | 5.279599e-51 | -8.615850e-47 |
| Msa0833310 | Msa1385770 | 0.811290 | 7.539553e-51 | -8.615850e-47 |
| Msa0833310 | Msa1392200 | 0.821712 | 3.490014e-53 | -8.615850e-47 |
| Msa0833310 | Msa1393740 | 0.830303 | 3.168873e-55 | -8.615850e-47 |
| Msa0833310 | Msa1397810 | 0.818714 | 1.696723e-52 | -8.615850e-47 |
| Msa0833310 | Msa1404010 | 0.887137 | 1.858449e-72 | -8.615850e-47 |
| Msa0833310 | Msa1404190 | 0.835570 | 1.553892e-56 | -8.615850e-47 |
| Msa0833310 | Msa1409240 | 0.807749 | 4.341014e-50 | -8.615850e-47 |
| Msa0833310 | Msa1423910 | 0.805990 | 1.022267e-49 | -8.615850e-47 |
| Msa0833310 | Msa1431040 | 0.830550 | 2.757678e-55 | -8.615850e-47 |
| Msa0833310 | Msa1434140 | 0.800896 | 1.161991e-48 | -8.615850e-47 |
| Msa0833310 | Msa1440000 | 0.810339 | 1.210613e-50 | -8.615850e-47 |
| Msa0833310 | Msa1448620 | 0.822398 | 2.420278e-53 | -8.615850e-47 |
| Msa0833310 | Msa1448630 | 0.832477 | 9.246567e-56 | -8.615850e-47 |
| Msa0833310 | Msa1450280 | 0.810029 | 1.412185e-50 | -8.615850e-47 |
| Msa0833310 | Msa1450870 | 0.808573 | 2.898217e-50 | -8.615850e-47 |
| Msa0833310 | Msa1451550 | 0.809327 | 1.999144e-50 | -8.615850e-47 |
| Msa0833310 | Msa1452470 | 0.815025 | 1.141778e-51 | -8.615850e-47 |
| Msa0833310 | Msa1453080 | 0.814776 | 1.296831e-51 | -8.615850e-47 |
| Msa0833310 | Msa1461280 | 0.811232 | 7.761881e-51 | -8.615850e-47 |
| Msa0833310 | Msa1465080 | 0.806877 | 6.646476e-50 | -8.615850e-47 |
| Msa0833310 | Msa1465960 | 0.826906 | 2.098059e-54 | -8.615850e-47 |
| Msa0127310 | Msa0833310 | 0.808357 | 3.222589e-50 | -8.615850e-47 |
| Msa0128860 | Msa0833310 | 0.806011 | 1.011596e-49 | -8.615850e-47 |
| Msa0137820 | Msa0833310 | 0.852126 | 5.664223e-61 | -8.615850e-47 |
| Msa0140110 | Msa0833310 | 0.815357 | 9.638208e-52 | -8.615850e-47 |
| Msa0140650 | Msa0833310 | 0.840496 | 8.395272e-58 | -8.615850e-47 |
| Msa0143080 | Msa0833310 | 0.802811 | 4.698913e-49 | -8.615850e-47 |
| Msa0165950 | Msa0833310 | 0.800168 | 1.636009e-48 | -8.615850e-47 |
| Msa0174730 | Msa0833310 | 0.804169 | 2.458053e-49 | -8.615850e-47 |
| Msa0178990 | Msa0833310 | 0.801847 | 7.420919e-49 | -8.615850e-47 |
| Msa0183460 | Msa0833310 | 0.831809 | 1.352238e-55 | -8.615850e-47 |
| Msa0184020 | Msa0833310 | 0.819873 | 9.239463e-53 | -8.615850e-47 |
| Msa0194480 | Msa0833310 | 0.849394 | 3.326188e-60 | -8.615850e-47 |
| Msa0199690 | Msa0833310 | 0.836225 | 1.059969e-56 | -8.615850e-47 |
| Msa0199880 | Msa0833310 | 0.834645 | 2.658272e-56 | -8.615850e-47 |
| Msa0236270 | Msa0833310 | 0.824441 | 8.057555e-54 | -8.615850e-47 |
| Msa0236980 | Msa0833310 | 0.818405 | 1.994412e-52 | -8.615850e-47 |
| Msa0366890 | Msa0833310 | 0.801870 | 7.341788e-49 | -8.615850e-47 |
| Msa0376690 | Msa0833310 | 0.829492 | 4.995180e-55 | -8.615850e-47 |
| Msa0378490 | Msa0833310 | 0.819571 | 1.082909e-52 | -8.615850e-47 |
| Msa0398950 | Msa0833310 | 0.817326 | 3.495081e-52 | -8.615850e-47 |
| Msa0402330 | Msa0833310 | 0.803007 | 4.280112e-49 | -8.615850e-47 |
| Msa0414800 | Msa0833310 | 0.802652 | 5.067620e-49 | -8.615850e-47 |
| Msa0415430 | Msa0833310 | 0.816603 | 5.077712e-52 | -8.615850e-47 |
| Msa0458060 | Msa0833310 | 0.808982 | 2.369302e-50 | -8.615850e-47 |
| Msa0469850 | Msa0833310 | 0.811010 | 8.670017e-51 | -8.615850e-47 |
| Msa0471590 | Msa0833310 | 0.841930 | 3.523575e-58 | -8.615850e-47 |
| Msa0481480 | Msa0833310 | 0.814716 | 1.337449e-51 | -8.615850e-47 |
| Msa0242230 | Msa0833310 | 0.812804 | 3.526257e-51 | -8.615850e-47 |
| Msa0244270 | Msa0833310 | 0.819610 | 1.060909e-52 | -8.615850e-47 |
| Msa0260240 | Msa0833310 | 0.806967 | 6.359378e-50 | -8.615850e-47 |
| Msa0260280 | Msa0833310 | 0.804218 | 2.400862e-49 | -8.615850e-47 |
| Msa0260830 | Msa0833310 | 0.825245 | 5.207957e-54 | -8.615850e-47 |
| Msa0262310 | Msa0833310 | 0.812475 | 4.161712e-51 | -8.615850e-47 |
| Msa0280430 | Msa0833310 | 0.835493 | 1.624999e-56 | -8.615850e-47 |
| Msa0284820 | Msa0833310 | 0.807028 | 6.174822e-50 | -8.615850e-47 |
| Msa0304260 | Msa0833310 | 0.803322 | 3.683868e-49 | -8.615850e-47 |
| Msa0304330 | Msa0833310 | 0.800666 | 1.294933e-48 | -8.615850e-47 |
| Msa0304590 | Msa0833310 | 0.813520 | 2.455173e-51 | -8.615850e-47 |
| Msa0304660 | Msa0833310 | 0.800784 | 1.224870e-48 | -8.615850e-47 |
| Msa0314460 | Msa0833310 | 0.813882 | 2.044211e-51 | -8.615850e-47 |
| Msa0328210 | Msa0833310 | 0.816683 | 4.873342e-52 | -8.615850e-47 |
| Msa0337650 | Msa0833310 | 0.823869 | 1.098227e-53 | -8.615850e-47 |
| Msa0347680 | Msa0833310 | 0.815274 | 1.005502e-51 | -8.615850e-47 |
| Msa0355270 | Msa0833310 | 0.807113 | 5.922393e-50 | -8.615850e-47 |
| Msa0485850 | Msa0833310 | 0.825591 | 4.311927e-54 | -8.615850e-47 |
| Msa0508590 | Msa0833310 | 0.817260 | 3.616940e-52 | -8.615850e-47 |
| Msa0508630 | Msa0833310 | 0.822921 | 1.828721e-53 | -8.615850e-47 |
| Msa0534900 | Msa0833310 | 0.816681 | 4.879241e-52 | -8.615850e-47 |
| Msa0552810 | Msa0833310 | 0.811762 | 5.951916e-51 | -8.615850e-47 |
| Msa0581070 | Msa0833310 | 0.815271 | 1.007208e-51 | -8.615850e-47 |
| Msa0590650 | Msa0833310 | 0.800784 | 1.225077e-48 | -8.615850e-47 |
| Msa0591060 | Msa0833310 | 0.812012 | 5.251404e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0833310 | MtrunA17_Chr5g0398631 | 89.362 | 94 | 10 | 0 | 1 | 94 | 1 | 94 | 1.42e-55 | 173 |
| Msa0833310 | MtrunA17_Chr5g0398631 | 81.818 | 66 | 11 | 1 | 156 | 220 | 72 | 137 | 1.59e-29 | 107 |
| Msa0833310 | MtrunA17_Chr4g0056781 | 63.529 | 85 | 31 | 0 | 1 | 85 | 1 | 85 | 2.64e-35 | 122 |
| Msa0833310 | MtrunA17_Chr4g0056781 | 74.000 | 50 | 13 | 0 | 168 | 217 | 85 | 134 | 2.35e-19 | 80.9 |
| Msa0833310 | MtrunA17_Chr7g0245821 | 46.512 | 86 | 46 | 0 | 1 | 86 | 1 | 86 | 5.90e-17 | 73.6 |
| Msa0833310 | MtrunA17_Chr7g0258171 | 44.444 | 99 | 52 | 2 | 3 | 98 | 4 | 102 | 1.88e-16 | 73.2 |
| Msa0833310 | MtrunA17_Chr1g0174201 | 43.434 | 99 | 53 | 2 | 3 | 98 | 4 | 102 | 1.72e-14 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0833310 | AT1G12390.1 | 59.184 | 98 | 38 | 1 | 1 | 96 | 1 | 98 | 2.93e-35 | 122 |
| Msa0833310 | AT1G12390.1 | 51.190 | 84 | 34 | 3 | 144 | 220 | 54 | 137 | 1.93e-18 | 78.6 |
| Msa0833310 | AT4G12090.1 | 49.524 | 105 | 48 | 2 | 1 | 100 | 1 | 105 | 6.41e-30 | 108 |
| Msa0833310 | AT1G12340.1 | 57.895 | 76 | 30 | 1 | 23 | 96 | 15 | 90 | 5.27e-26 | 98.2 |
| Msa0833310 | AT1G12340.1 | 51.190 | 84 | 34 | 3 | 144 | 220 | 46 | 129 | 2.57e-18 | 78.2 |
| Msa0833310 | AT1G62880.1 | 52.041 | 98 | 45 | 1 | 1 | 96 | 1 | 98 | 3.41e-25 | 96.3 |
| Msa0833310 | AT1G62880.1 | 64.151 | 53 | 19 | 0 | 168 | 220 | 85 | 137 | 7.63e-19 | 79.7 |
| Msa0833310 | AT3G12180.1 | 42.857 | 98 | 54 | 1 | 3 | 98 | 4 | 101 | 5.70e-18 | 77.8 |
Find 69 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTGTCGTGATTGTGAATT+TGG | 0.180840 | 5_4:-6486736 | Msa0833310:five_prime_UTR |
| GGTTATTTGCATAGTGTTAT+TGG | 0.232406 | 5_4:-6484245 | Msa0833310:three_prime_UTR |
| ACCCTCTTCTACCTTATTAC+TGG | 0.277363 | 5_4:-6486406 | Msa0833310:CDS |
| CAGTTGTTATGACAGAAAAT+TGG | 0.279923 | 5_4:+6485214 | None:intergenic |
| TTGTGGATCATGGCTGGTTT+GGG | 0.299828 | 5_4:-6485323 | Msa0833310:CDS |
| CTGGTGGCTGATGAGGGACT+TGG | 0.310468 | 5_4:-6484267 | Msa0833310:three_prime_UTR |
| TAATCCAATGGCCAGTAATA+AGG | 0.321866 | 5_4:+6486395 | None:intergenic |
| ATAGCTTGAGTATAAAATTC+AGG | 0.353657 | 5_4:+6486433 | None:intergenic |
| ACCAAAATACAGAGAAGAAA+AGG | 0.381895 | 5_4:+6484661 | None:intergenic |
| GGGAGCATGGTCGATCTCTT+TGG | 0.384720 | 5_4:-6486693 | Msa0833310:exon |
| TTTGTGGATCATGGCTGGTT+TGG | 0.388026 | 5_4:-6485324 | Msa0833310:CDS |
| ACACCAATTCTTCCTCTCAT+TGG | 0.393963 | 5_4:+6485466 | None:intergenic |
| CGGTAGATGGAAGGTGGGAG+TGG | 0.399660 | 5_4:-6485515 | Msa0833310:CDS |
| CCAGCCATGATCCACAAAAC+TGG | 0.405886 | 5_4:+6485329 | None:intergenic |
| TCTACCTTATTACTGGCCAT+TGG | 0.413737 | 5_4:-6486399 | Msa0833310:CDS |
| GAGTTGAGGAGGTCGGTAGA+TGG | 0.419737 | 5_4:-6485528 | Msa0833310:CDS |
| GGTGGGAGTGGGTGTTAAGA+TGG | 0.422238 | 5_4:-6485503 | Msa0833310:CDS |
| GAAAAGGATCTATCATATAA+TGG | 0.426984 | 5_4:-6484108 | None:intergenic |
| AGGCGATTGCGTGCAGGTAT+TGG | 0.457997 | 5_4:-6485300 | Msa0833310:CDS |
| AAGGCATCAAAGGGAGGTGC+TGG | 0.460614 | 5_4:-6484286 | Msa0833310:three_prime_UTR |
| CTTTATTTATTACTGCGAAA+AGG | 0.467055 | 5_4:-6484124 | Msa0833310:three_prime_UTR |
| GGAGGTGCTGGTGGCTGATG+AGG | 0.470899 | 5_4:-6484274 | Msa0833310:three_prime_UTR |
| GTATGTGACGAGAACGAGTA+AGG | 0.471449 | 5_4:+6486641 | None:intergenic |
| GTTCCAATGAGAGGAAGAAT+TGG | 0.475347 | 5_4:-6485469 | Msa0833310:CDS |
| CTGAAATTGAAGTATAGATA+AGG | 0.478308 | 5_4:+6486355 | None:intergenic |
| AGATATTCAACATGCTTGCA+TGG | 0.503543 | 5_4:-6484728 | Msa0833310:CDS |
| GAGGTGCTGGTGGCTGATGA+GGG | 0.504440 | 5_4:-6484273 | Msa0833310:three_prime_UTR |
| GGTAGATGGAAGGTGGGAGT+GGG | 0.506579 | 5_4:-6485514 | Msa0833310:CDS |
| TAGGATGATTTATACAACAT+TGG | 0.510697 | 5_4:-6484559 | Msa0833310:CDS |
| ACTGTCGTGATTGTGAATTT+GGG | 0.513355 | 5_4:-6486735 | Msa0833310:five_prime_UTR |
| TGGTGGCTGATGAGGGACTT+GGG | 0.523099 | 5_4:-6484266 | Msa0833310:three_prime_UTR |
| TTTGGGAGGCGATTGCGTGC+AGG | 0.525177 | 5_4:-6485306 | Msa0833310:CDS |
| TAAGGCGATGAGGAGGAAGA+AGG | 0.531347 | 5_4:+6486659 | None:intergenic |
| TGAGGAGGTCGGTAGATGGA+AGG | 0.532817 | 5_4:-6485524 | Msa0833310:CDS |
| GAGGTCGGTAGATGGAAGGT+GGG | 0.533238 | 5_4:-6485520 | Msa0833310:CDS |
| CCAAAATACAGAGAAGAAAA+GGG | 0.534935 | 5_4:+6484662 | None:intergenic |
| GGAGGTCGGTAGATGGAAGG+TGG | 0.536835 | 5_4:-6485521 | Msa0833310:CDS |
| TATTGGCCGATGTGTGCCTA+TGG | 0.539151 | 5_4:-6484228 | Msa0833310:three_prime_UTR |
| GAACGAGTAAGGCGATGAGG+AGG | 0.539215 | 5_4:+6486652 | None:intergenic |
| GTGGGTGTTAAGATGGAGAT+GGG | 0.542877 | 5_4:-6485496 | Msa0833310:CDS |
| GATGATTTATACAACATTGG+AGG | 0.543797 | 5_4:-6484556 | Msa0833310:CDS |
| TATATGGGTGAAGGCATCAA+AGG | 0.545129 | 5_4:-6484296 | Msa0833310:intron |
| GGCCAGTAATAAGGTAGAAG+AGG | 0.551310 | 5_4:+6486404 | None:intergenic |
| AGTGGGTGTTAAGATGGAGA+TGG | 0.554559 | 5_4:-6485497 | Msa0833310:CDS |
| GCATGGTCGATCTCTTTGGA+TGG | 0.563006 | 5_4:-6486689 | Msa0833310:CDS |
| TCACAATGAGTAATTGCAGT+TGG | 0.564711 | 5_4:-6484532 | Msa0833310:exon |
| AAGCGAGTGTGGCAGAGTTG+AGG | 0.573256 | 5_4:-6485542 | Msa0833310:CDS |
| TGGATCATGGCTGGTTTGGG+AGG | 0.575805 | 5_4:-6485320 | Msa0833310:CDS |
| GATATTCAACATGCTTGCAT+GGG | 0.580279 | 5_4:-6484727 | Msa0833310:CDS |
| GCCAGTAATAAGGTAGAAGA+GGG | 0.582613 | 5_4:+6486405 | None:intergenic |
| CGAGTGTGGCAGAGTTGAGG+AGG | 0.584522 | 5_4:-6485539 | Msa0833310:CDS |
| ACTCGTTCTCGTCACATACC+AGG | 0.584865 | 5_4:-6486637 | Msa0833310:intron |
| AATCTGGAAATTTACTGCAG+TGG | 0.585822 | 5_4:+6484476 | None:intergenic |
| GCATCAAAGGGAGGTGCTGG+TGG | 0.587098 | 5_4:-6484283 | Msa0833310:three_prime_UTR |
| ATATGGGTGAAGGCATCAAA+GGG | 0.593483 | 5_4:-6484295 | Msa0833310:intron |
| TGTGGCAGAGTTGAGGAGGT+CGG | 0.602092 | 5_4:-6485535 | Msa0833310:CDS |
| GCAGCGACCAAACAGCATCT+CGG | 0.616324 | 5_4:+6485249 | None:intergenic |
| AAAGTTGCGGTCGTTGCACG+TGG | 0.626941 | 5_4:-6486769 | Msa0833310:five_prime_UTR |
| TTTCTCAAAACGAATAAATG+TGG | 0.627158 | 5_4:-6486464 | Msa0833310:CDS |
| ATGGGCGTTGTTCCAATGAG+AGG | 0.628761 | 5_4:-6485478 | Msa0833310:CDS |
| AATCAAATTCTAGTTCTGCA+AGG | 0.631149 | 5_4:+6486503 | None:intergenic |
| AGAAGAAAGACATAATCCAA+TGG | 0.631877 | 5_4:+6486383 | None:intergenic |
| TGATTTGTAGAGCAAAGTTG+CGG | 0.636741 | 5_4:-6486782 | Msa0833310:five_prime_UTR |
| CGAGAACGAGTAAGGCGATG+AGG | 0.647410 | 5_4:+6486649 | None:intergenic |
| TTGCATGGGAAAAGAAGCAA+CGG | 0.647653 | 5_4:-6484713 | Msa0833310:CDS |
| TTGGTCGCTGCAATATAACA+AGG | 0.667518 | 5_4:-6485237 | Msa0833310:CDS |
| TGGGTGAAGGCATCAAAGGG+AGG | 0.688017 | 5_4:-6484292 | Msa0833310:intron |
| GTGCAGGTATTGGTGATGCA+AGG | 0.696476 | 5_4:-6485290 | Msa0833310:CDS |
| GCGACCAAACAGCATCTCGG+AGG | 0.715586 | 5_4:+6485252 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTAAAAATTTAAAAGTTTA+AGG | - | chr5_4:6484957-6484976 | Msa0833310:intron | 10.0% |
| !!! | TTTATTTTTAAATGTTTGTT+TGG | - | chr5_4:6486321-6486340 | Msa0833310:intron | 10.0% |
| !!! | TGTTAATAAATCATTTGTTT+TGG | - | chr5_4:6484637-6484656 | Msa0833310:intron | 15.0% |
| !! | AAACAAATTTGAATTTAGAA+AGG | - | chr5_4:6484986-6485005 | Msa0833310:intron | 15.0% |
| !!! | TTCATGCTAATTTTTTTTAT+AGG | - | chr5_4:6485017-6485036 | Msa0833310:intron | 15.0% |
| !!! | TCATGCTAATTTTTTTTATA+GGG | - | chr5_4:6485018-6485037 | Msa0833310:intron | 15.0% |
| !! | CAAAATTTGATGTATTTATA+AGG | - | chr5_4:6485081-6485100 | Msa0833310:intron | 15.0% |
| !!! | ATTAACATTTTGTGAAGAAT+AGG | + | chr5_4:6484624-6484643 | None:intergenic | 20.0% |
| !!! | CCATTATGTCATTATTTTTT+GGG | + | chr5_4:6485124-6485143 | None:intergenic | 20.0% |
| !!! | TCCATTATGTCATTATTTTT+TGG | + | chr5_4:6485125-6485144 | None:intergenic | 20.0% |
| !!! | TTTAAAATTTGGGGTTTATT+TGG | - | chr5_4:6485204-6485223 | Msa0833310:intron | 20.0% |
| !!! | TTTACTTTGAGTTTGTTAAT+AGG | - | chr5_4:6485549-6485568 | Msa0833310:CDS | 20.0% |
| !! | TTGAAACCTATTAAAAAGTT+CGG | - | chr5_4:6485905-6485924 | Msa0833310:intron | 20.0% |
| !! | CAGTAAGATATCTTTATATA+CGG | - | chr5_4:6486551-6486570 | Msa0833310:intron | 20.0% |
| !!! | ACATTATCTTTTTTATCCAT+AGG | + | chr5_4:6486697-6486716 | None:intergenic | 20.0% |
| !! | TTCTTTTCTTCTTCTTCTTA+AGG | - | chr5_4:6484297-6484316 | Msa0833310:intron | 25.0% |
| !!! | ATTCGTTTTGAGAAATCATA+TGG | + | chr5_4:6484437-6484456 | None:intergenic | 25.0% |
| ! | TTTCTCAAAACGAATAAATG+TGG | - | chr5_4:6484442-6484461 | Msa0833310:three_prime_UTR | 25.0% |
| ! | ATAGCTTGAGTATAAAATTC+AGG | + | chr5_4:6484476-6484495 | None:intergenic | 25.0% |
| ! | CTGAAATTGAAGTATAGATA+AGG | + | chr5_4:6484554-6484573 | None:intergenic | 25.0% |
| ! | TTGTGAAAGAACATCTTATA+AGG | + | chr5_4:6484793-6484812 | None:intergenic | 25.0% |
| !! | GAGCTGAAAATATGATTTTT+AGG | + | chr5_4:6484884-6484903 | None:intergenic | 25.0% |
| ! | CCCAAAAAATAATGACATAA+TGG | - | chr5_4:6485121-6485140 | Msa0833310:intron | 25.0% |
| !!! | AAATAATGACATAATGGACT+CGG | - | chr5_4:6485127-6485146 | Msa0833310:intron | 25.0% |
| ! | ATCAATTTCAATCACAAAAC+TGG | + | chr5_4:6485522-6485541 | None:intergenic | 25.0% |
| ! | TGAAACCTATTAAAAAGTTC+GGG | - | chr5_4:6485906-6485925 | Msa0833310:intron | 25.0% |
| ! | TTAAATGTTTGTTTGGTTGT+AGG | - | chr5_4:6486328-6486347 | Msa0833310:intron | 25.0% |
| ! | TAGGATGATTTATACAACAT+TGG | - | chr5_4:6486347-6486366 | Msa0833310:intron | 25.0% |
| !! | AGTAAATTTCCAGATTTTTG+TGG | - | chr5_4:6486437-6486456 | Msa0833310:CDS | 25.0% |
| ! | AACTTATGACTTCATGTATA+TGG | - | chr5_4:6486594-6486613 | Msa0833310:intron | 25.0% |
| ! | ACTTATGACTTCATGTATAT+GGG | - | chr5_4:6486595-6486614 | Msa0833310:intron | 25.0% |
| !! | CTTTATTTATTACTGCGAAA+AGG | - | chr5_4:6486782-6486801 | Msa0833310:five_prime_UTR | 25.0% |
| AAGAAGAAAAGAAGAATACC+TGG | + | chr5_4:6484290-6484309 | None:intergenic | 30.0% | |
| !! | AATCAAATTCTAGTTCTGCA+AGG | + | chr5_4:6484406-6484425 | None:intergenic | 30.0% |
| AGAAGAAAGACATAATCCAA+TGG | + | chr5_4:6484526-6484545 | None:intergenic | 30.0% | |
| !!! | TGTCACTTTTGTTGTTTATG+AGG | - | chr5_4:6485050-6485069 | Msa0833310:intron | 30.0% |
| !! | AATAATGACATAATGGACTC+GGG | - | chr5_4:6485128-6485147 | Msa0833310:intron | 30.0% |
| ! | TAAGCGGGGATTTAAAATTT+GGG | - | chr5_4:6485194-6485213 | Msa0833310:intron | 30.0% |
| ! | TTAATAGCAGTAGACTGTTT+TGG | - | chr5_4:6485263-6485282 | Msa0833310:CDS | 30.0% |
| CAGTTGTTATGACAGAAAAT+TGG | + | chr5_4:6485695-6485714 | None:intergenic | 30.0% | |
| TCTGTCATAACAACTGAAAT+TGG | - | chr5_4:6485699-6485718 | Msa0833310:intron | 30.0% | |
| CTGTCATAACAACTGAAATT+GGG | - | chr5_4:6485700-6485719 | Msa0833310:intron | 30.0% | |
| ! | TGGGTAATAGTTATGTTTTC+TGG | - | chr5_4:6485719-6485738 | Msa0833310:intron | 30.0% |
| TTCTATACTCAAACGATCTT+AGG | + | chr5_4:6485816-6485835 | None:intergenic | 30.0% | |
| ! | CTAATCCCGAACTTTTTAAT+AGG | + | chr5_4:6485914-6485933 | None:intergenic | 30.0% |
| ATGCTTGACATCTTATGTAA+GGG | - | chr5_4:6486070-6486089 | Msa0833310:intron | 30.0% | |
| ! | CATATTTTATTCCTGTGATC+AGG | - | chr5_4:6486121-6486140 | Msa0833310:intron | 30.0% |
| CCAAAATACAGAGAAGAAAA+GGG | + | chr5_4:6486247-6486266 | None:intergenic | 30.0% | |
| ACCAAAATACAGAGAAGAAA+AGG | + | chr5_4:6486248-6486267 | None:intergenic | 30.0% | |
| CATAACATTGACAGATAATC+AGG | + | chr5_4:6486280-6486299 | None:intergenic | 30.0% | |
| GATGATTTATACAACATTGG+AGG | - | chr5_4:6486350-6486369 | Msa0833310:intron | 30.0% | |
| ! | ACATGACTGACTGTATTTTT+GGG | - | chr5_4:6486492-6486511 | Msa0833310:CDS | 30.0% |
| GGTTATTTGCATAGTGTTAT+TGG | - | chr5_4:6486661-6486680 | Msa0833310:CDS | 30.0% | |
| ! | TGATTTGTAGAGCAAAGTTG+CGG | - | chr5_4:6484124-6484143 | Msa0833310:three_prime_UTR | 35.0% |
| TACTGTCGTGATTGTGAATT+TGG | - | chr5_4:6484170-6484189 | Msa0833310:three_prime_UTR | 35.0% | |
| ACTGTCGTGATTGTGAATTT+GGG | - | chr5_4:6484171-6484190 | Msa0833310:three_prime_UTR | 35.0% | |
| TAATCCAATGGCCAGTAATA+AGG | + | chr5_4:6484514-6484533 | None:intergenic | 35.0% | |
| ! | GTAAGCGGGGATTTAAAATT+TGG | - | chr5_4:6485193-6485212 | Msa0833310:intron | 35.0% |
| ! | AAGCGGGGATTTAAAATTTG+GGG | - | chr5_4:6485195-6485214 | Msa0833310:intron | 35.0% |
| TTTAGAAAAAGAAGCGAGTG+TGG | - | chr5_4:6485353-6485372 | Msa0833310:intron | 35.0% | |
| !! | AGAGGGTAGTTTTTCTAGTA+GGG | - | chr5_4:6485484-6485503 | Msa0833310:CDS | 35.0% |
| !! | ATAGTTATGTTTTCTGGCAG+AGG | - | chr5_4:6485725-6485744 | Msa0833310:intron | 35.0% |
| !! | TAGTTATGTTTTCTGGCAGA+GGG | - | chr5_4:6485726-6485745 | Msa0833310:intron | 35.0% |
| ACAAGCATGGTTGTTAAACT+TGG | - | chr5_4:6485772-6485791 | Msa0833310:intron | 35.0% | |
| CAAGCATGGTTGTTAAACTT+GGG | - | chr5_4:6485773-6485792 | Msa0833310:intron | 35.0% | |
| ATACTCAAACGATCTTAGGT+AGG | + | chr5_4:6485812-6485831 | None:intergenic | 35.0% | |
| TAACTGGAACACCTATCATA+GGG | + | chr5_4:6485986-6486005 | None:intergenic | 35.0% | |
| GATGCTTGACATCTTATGTA+AGG | - | chr5_4:6486069-6486088 | Msa0833310:intron | 35.0% | |
| GTAAGGGAATGTGCTTAAAA+TGG | - | chr5_4:6486086-6486105 | Msa0833310:intron | 35.0% | |
| AGATATTCAACATGCTTGCA+TGG | - | chr5_4:6486178-6486197 | Msa0833310:intron | 35.0% | |
| GATATTCAACATGCTTGCAT+GGG | - | chr5_4:6486179-6486198 | Msa0833310:intron | 35.0% | |
| ! | CCCTTTTCTTCTCTGTATTT+TGG | - | chr5_4:6486244-6486263 | Msa0833310:intron | 35.0% |
| !!! | CTCTGTATTTTGGTATGAGA+AGG | - | chr5_4:6486254-6486273 | Msa0833310:intron | 35.0% |
| TCACAATGAGTAATTGCAGT+TGG | - | chr5_4:6486374-6486393 | Msa0833310:CDS | 35.0% | |
| AATCTGGAAATTTACTGCAG+TGG | + | chr5_4:6486433-6486452 | None:intergenic | 35.0% | |
| ! | CACATGACTGACTGTATTTT+TGG | - | chr5_4:6486491-6486510 | Msa0833310:CDS | 35.0% |
| !! | CATGACTGACTGTATTTTTG+GGG | - | chr5_4:6486493-6486512 | Msa0833310:CDS | 35.0% |
| !!! | TGCAAGCTTGTTTTGATAGT+TGG | - | chr5_4:6486527-6486546 | Msa0833310:intron | 35.0% |
| ! | TTTTATCCATAGGCACACAT+CGG | + | chr5_4:6486687-6486706 | None:intergenic | 35.0% |
| ACCCTCTTCTACCTTATTAC+TGG | - | chr5_4:6484500-6484519 | Msa0833310:three_prime_UTR | 40.0% | |
| GCCAGTAATAAGGTAGAAGA+GGG | + | chr5_4:6484504-6484523 | None:intergenic | 40.0% | |
| TCTACCTTATTACTGGCCAT+TGG | - | chr5_4:6484507-6484526 | Msa0833310:three_prime_UTR | 40.0% | |
| TCGAATAGAAGACCCATAAG+AGG | - | chr5_4:6485166-6485185 | Msa0833310:intron | 40.0% | |
| ! | TTTGGCAGCTCTAATACTGA+TGG | - | chr5_4:6485222-6485241 | Msa0833310:intron | 40.0% |
| GTTCCAATGAGAGGAAGAAT+TGG | - | chr5_4:6485437-6485456 | Msa0833310:intron | 40.0% | |
| ACACCAATTCTTCCTCTCAT+TGG | + | chr5_4:6485443-6485462 | None:intergenic | 40.0% | |
| AAAACTACCCTCTCTACCTA+CGG | + | chr5_4:6485477-6485496 | None:intergenic | 40.0% | |
| !! | GAGAGGGTAGTTTTTCTAGT+AGG | - | chr5_4:6485483-6485502 | Msa0833310:CDS | 40.0% |
| !! | GAGGGTAGTTTTTCTAGTAG+GGG | - | chr5_4:6485485-6485504 | Msa0833310:CDS | 40.0% |
| ! | AATAGGCAAGTCCAGTTTTG+TGG | - | chr5_4:6485566-6485585 | Msa0833310:intron | 40.0% |
| !! | AAGTCCAGTTTTGTGGATCA+TGG | - | chr5_4:6485573-6485592 | Msa0833310:intron | 40.0% |
| TTGGTCGCTGCAATATAACA+AGG | - | chr5_4:6485669-6485688 | Msa0833310:intron | 40.0% | |
| TGGTTGTTAAACTTGGGAGT+CGG | - | chr5_4:6485779-6485798 | Msa0833310:intron | 40.0% | |
| TCAAACGATCTTAGGTAGGT+GGG | + | chr5_4:6485808-6485827 | None:intergenic | 40.0% | |
| TCTTGAAACCACCCTATGAT+AGG | - | chr5_4:6485972-6485991 | Msa0833310:intron | 40.0% | |
| CTAACTGGAACACCTATCAT+AGG | + | chr5_4:6485987-6486006 | None:intergenic | 40.0% | |
| ATGATAGGTGTTCCAGTTAG+AGG | - | chr5_4:6485987-6486006 | Msa0833310:intron | 40.0% | |
| GTGTTCCAGTTAGAGGATTT+GGG | - | chr5_4:6485994-6486013 | Msa0833310:intron | 40.0% | |
| TGTTCCAGTTAGAGGATTTG+GGG | - | chr5_4:6485995-6486014 | Msa0833310:intron | 40.0% | |
| ! | TTTTGTCTGTACCTGATCAC+AGG | + | chr5_4:6486135-6486154 | None:intergenic | 40.0% |
| TTGCATGGGAAAAGAAGCAA+CGG | - | chr5_4:6486193-6486212 | Msa0833310:intron | 40.0% | |
| !!! | GCAGTTGGTTACTTGTTTTG+TGG | - | chr5_4:6486389-6486408 | Msa0833310:CDS | 40.0% |
| TGCTCTCTACCACAAAAATC+TGG | + | chr5_4:6486449-6486468 | None:intergenic | 40.0% | |
| GACTTCATGTATATGGGTGA+AGG | - | chr5_4:6486601-6486620 | Msa0833310:intron | 40.0% | |
| !! | TATATGGGTGAAGGCATCAA+AGG | - | chr5_4:6486610-6486629 | Msa0833310:intron | 40.0% |
| !! | ATATGGGTGAAGGCATCAAA+GGG | - | chr5_4:6486611-6486630 | Msa0833310:intron | 40.0% |
| GTATGTGACGAGAACGAGTA+AGG | + | chr5_4:6484268-6484287 | None:intergenic | 45.0% | |
| GGCCAGTAATAAGGTAGAAG+AGG | + | chr5_4:6484505-6484524 | None:intergenic | 45.0% | |
| CCGCTTACTAAGCCTCTTAT+GGG | + | chr5_4:6485181-6485200 | None:intergenic | 45.0% | |
| CCCATAAGAGGCTTAGTAAG+CGG | - | chr5_4:6485178-6485197 | Msa0833310:intron | 45.0% | |
| CCATAAGAGGCTTAGTAAGC+GGG | - | chr5_4:6485179-6485198 | Msa0833310:intron | 45.0% | |
| CATAAGAGGCTTAGTAAGCG+GGG | - | chr5_4:6485180-6485199 | Msa0833310:intron | 45.0% | |
| AGTGGGTGTTAAGATGGAGA+TGG | - | chr5_4:6485409-6485428 | Msa0833310:intron | 45.0% | |
| GTGGGTGTTAAGATGGAGAT+GGG | - | chr5_4:6485410-6485429 | Msa0833310:intron | 45.0% | |
| AACAATTGCCGTAGGTAGAG+AGG | - | chr5_4:6485466-6485485 | Msa0833310:CDS | 45.0% | |
| ACAATTGCCGTAGGTAGAGA+GGG | - | chr5_4:6485467-6485486 | Msa0833310:CDS | 45.0% | |
| ! | TTTGTGGATCATGGCTGGTT+TGG | - | chr5_4:6485582-6485601 | Msa0833310:intron | 45.0% |
| !! | TTGTGGATCATGGCTGGTTT+GGG | - | chr5_4:6485583-6485602 | Msa0833310:intron | 45.0% |
| ! | TTTTCCTCCGAGATGCTGTT+TGG | - | chr5_4:6485650-6485669 | Msa0833310:intron | 45.0% |
| !! | TTATGTTTTCTGGCAGAGGG+TGG | - | chr5_4:6485729-6485748 | Msa0833310:intron | 45.0% |
| GGTTGTTAAACTTGGGAGTC+GGG | - | chr5_4:6485780-6485799 | Msa0833310:intron | 45.0% | |
| CTCAAACGATCTTAGGTAGG+TGG | + | chr5_4:6485809-6485828 | None:intergenic | 45.0% | |
| GGTGTTCCAGTTAGAGGATT+TGG | - | chr5_4:6485993-6486012 | Msa0833310:intron | 45.0% | |
| ATCTCCCCAAATCCTCTAAC+TGG | + | chr5_4:6486002-6486021 | None:intergenic | 45.0% | |
| GAGAGAGAGAGAGAGAGAGA+GGG | - | chr5_4:6484193-6484212 | Msa0833310:three_prime_UTR | 50.0% | |
| GCATGGTCGATCTCTTTGGA+TGG | - | chr5_4:6484217-6484236 | Msa0833310:three_prime_UTR | 50.0% | |
| TAAGGCGATGAGGAGGAAGA+AGG | + | chr5_4:6484250-6484269 | None:intergenic | 50.0% | |
| ACTCGTTCTCGTCACATACC+AGG | - | chr5_4:6484269-6484288 | Msa0833310:three_prime_UTR | 50.0% | |
| CCCGCTTACTAAGCCTCTTA+TGG | + | chr5_4:6485182-6485201 | None:intergenic | 50.0% | |
| ! | GGCAGCTCTAATACTGATGG+TGG | - | chr5_4:6485225-6485244 | Msa0833310:intron | 50.0% |
| ! | ATGGGCGTTGTTCCAATGAG+AGG | - | chr5_4:6485428-6485447 | Msa0833310:intron | 50.0% |
| CCAGCCATGATCCACAAAAC+TGG | + | chr5_4:6485580-6485599 | None:intergenic | 50.0% | |
| !! | CCAGTTTTGTGGATCATGGC+TGG | - | chr5_4:6485577-6485596 | Msa0833310:intron | 50.0% |
| !! | GTGCAGGTATTGGTGATGCA+AGG | - | chr5_4:6485616-6485635 | Msa0833310:intron | 50.0% |
| TTCTGGCAGAGGGTGGTTTA+AGG | - | chr5_4:6485736-6485755 | Msa0833310:intron | 50.0% | |
| AAGGCTGCGACAAACAAGCA+TGG | - | chr5_4:6485759-6485778 | Msa0833310:intron | 50.0% | |
| GGGTGGTTTCAAGAGATCGA+AGG | + | chr5_4:6485966-6485985 | None:intergenic | 50.0% | |
| CTGGAACACCTATCATAGGG+TGG | + | chr5_4:6485983-6486002 | None:intergenic | 50.0% | |
| TATTGGCCGATGTGTGCCTA+TGG | - | chr5_4:6486678-6486697 | Msa0833310:CDS | 50.0% | |
| AAAGTTGCGGTCGTTGCACG+TGG | - | chr5_4:6484137-6484156 | Msa0833310:three_prime_UTR | 55.0% | |
| GGAGAGAGAGAGAGAGAGAG+AGG | - | chr5_4:6484192-6484211 | Msa0833310:three_prime_UTR | 55.0% | |
| AGAGAGAGAGAGAGGGAGCA+TGG | - | chr5_4:6484200-6484219 | Msa0833310:three_prime_UTR | 55.0% | |
| ! | GGGAGCATGGTCGATCTCTT+TGG | - | chr5_4:6484213-6484232 | Msa0833310:three_prime_UTR | 55.0% |
| GAACGAGTAAGGCGATGAGG+AGG | + | chr5_4:6484257-6484276 | None:intergenic | 55.0% | |
| CGAGAACGAGTAAGGCGATG+AGG | + | chr5_4:6484260-6484279 | None:intergenic | 55.0% | |
| AAGCGAGTGTGGCAGAGTTG+AGG | - | chr5_4:6485364-6485383 | Msa0833310:intron | 55.0% | |
| TGTGGCAGAGTTGAGGAGGT+CGG | - | chr5_4:6485371-6485390 | Msa0833310:intron | 55.0% | |
| GAGTTGAGGAGGTCGGTAGA+TGG | - | chr5_4:6485378-6485397 | Msa0833310:intron | 55.0% | |
| TGAGGAGGTCGGTAGATGGA+AGG | - | chr5_4:6485382-6485401 | Msa0833310:intron | 55.0% | |
| GAGGTCGGTAGATGGAAGGT+GGG | - | chr5_4:6485386-6485405 | Msa0833310:intron | 55.0% | |
| GGTAGATGGAAGGTGGGAGT+GGG | - | chr5_4:6485392-6485411 | Msa0833310:intron | 55.0% | |
| GGTGGGAGTGGGTGTTAAGA+TGG | - | chr5_4:6485403-6485422 | Msa0833310:intron | 55.0% | |
| ! | GGTGTCGCAACAATTGCCGT+AGG | - | chr5_4:6485458-6485477 | Msa0833310:CDS | 55.0% |
| !! | TGGATCATGGCTGGTTTGGG+AGG | - | chr5_4:6485586-6485605 | Msa0833310:intron | 55.0% |
| AGGCGATTGCGTGCAGGTAT+TGG | - | chr5_4:6485606-6485625 | Msa0833310:intron | 55.0% | |
| GCAGCGACCAAACAGCATCT+CGG | + | chr5_4:6485660-6485679 | None:intergenic | 55.0% | |
| GGCAGAGGGTGGTTTAAGGA+AGG | - | chr5_4:6485740-6485759 | Msa0833310:intron | 55.0% | |
| !! | TGGGTGAAGGCATCAAAGGG+AGG | - | chr5_4:6486614-6486633 | Msa0833310:intron | 55.0% |
| ! | AAGGCATCAAAGGGAGGTGC+TGG | - | chr5_4:6486620-6486639 | Msa0833310:intron | 55.0% |
| TGGTGGCTGATGAGGGACTT+GGG | - | chr5_4:6486640-6486659 | Msa0833310:CDS | 55.0% | |
| CGAGTGTGGCAGAGTTGAGG+AGG | - | chr5_4:6485367-6485386 | Msa0833310:intron | 60.0% | |
| GGAGGTCGGTAGATGGAAGG+TGG | - | chr5_4:6485385-6485404 | Msa0833310:intron | 60.0% | |
| CGGTAGATGGAAGGTGGGAG+TGG | - | chr5_4:6485391-6485410 | Msa0833310:intron | 60.0% | |
| TTTGGGAGGCGATTGCGTGC+AGG | - | chr5_4:6485600-6485619 | Msa0833310:intron | 60.0% | |
| GCGACCAAACAGCATCTCGG+AGG | + | chr5_4:6485657-6485676 | None:intergenic | 60.0% | |
| !! | GCATCAAAGGGAGGTGCTGG+TGG | - | chr5_4:6486623-6486642 | Msa0833310:intron | 60.0% |
| !! | GAGGTGCTGGTGGCTGATGA+GGG | - | chr5_4:6486633-6486652 | Msa0833310:intron | 60.0% |
| CTGGTGGCTGATGAGGGACT+TGG | - | chr5_4:6486639-6486658 | Msa0833310:CDS | 60.0% | |
| !! | GGAGGTGCTGGTGGCTGATG+AGG | - | chr5_4:6486632-6486651 | Msa0833310:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 6484111 | 6486817 | 6484111 | ID=Msa0833310;Name=Msa0833310 |
| chr5_4 | mRNA | 6484111 | 6486817 | 6484111 | ID=Msa0833310-mRNA-1;Parent=Msa0833310;Name=Msa0833310-mRNA-1;_AED=0.32;_eAED=0.32;_QI=108|0.5|0.71|0.71|0.83|0.71|7|323|220 |
| chr5_4 | exon | 6484111 | 6484305 | 6484111 | ID=Msa0833310-mRNA-1:exon:2833;Parent=Msa0833310-mRNA-1 |
| chr5_4 | exon | 6484414 | 6484578 | 6484414 | ID=Msa0833310-mRNA-1:exon:2832;Parent=Msa0833310-mRNA-1 |
| chr5_4 | exon | 6484663 | 6484785 | 6484663 | ID=Msa0833310-mRNA-1:exon:2831;Parent=Msa0833310-mRNA-1 |
| chr5_4 | exon | 6485227 | 6485357 | 6485227 | ID=Msa0833310-mRNA-1:exon:2830;Parent=Msa0833310-mRNA-1 |
| chr5_4 | exon | 6485453 | 6485570 | 6485453 | ID=Msa0833310-mRNA-1:exon:2829;Parent=Msa0833310-mRNA-1 |
| chr5_4 | exon | 6486352 | 6486533 | 6486352 | ID=Msa0833310-mRNA-1:exon:2828;Parent=Msa0833310-mRNA-1 |
| chr5_4 | exon | 6486638 | 6486817 | 6486638 | ID=Msa0833310-mRNA-1:exon:2827;Parent=Msa0833310-mRNA-1 |
| chr5_4 | five_prime_UTR | 6486710 | 6486817 | 6486710 | ID=Msa0833310-mRNA-1:five_prime_utr;Parent=Msa0833310-mRNA-1 |
| chr5_4 | CDS | 6486638 | 6486709 | 6486638 | ID=Msa0833310-mRNA-1:cds;Parent=Msa0833310-mRNA-1 |
| chr5_4 | CDS | 6486352 | 6486533 | 6486352 | ID=Msa0833310-mRNA-1:cds;Parent=Msa0833310-mRNA-1 |
| chr5_4 | CDS | 6485453 | 6485570 | 6485453 | ID=Msa0833310-mRNA-1:cds;Parent=Msa0833310-mRNA-1 |
| chr5_4 | CDS | 6485227 | 6485357 | 6485227 | ID=Msa0833310-mRNA-1:cds;Parent=Msa0833310-mRNA-1 |
| chr5_4 | CDS | 6484663 | 6484785 | 6484663 | ID=Msa0833310-mRNA-1:cds;Parent=Msa0833310-mRNA-1 |
| chr5_4 | CDS | 6484542 | 6484578 | 6484542 | ID=Msa0833310-mRNA-1:cds;Parent=Msa0833310-mRNA-1 |
| chr5_4 | three_prime_UTR | 6484414 | 6484541 | 6484414 | ID=Msa0833310-mRNA-1:three_prime_utr;Parent=Msa0833310-mRNA-1 |
| chr5_4 | three_prime_UTR | 6484111 | 6484305 | 6484111 | ID=Msa0833310-mRNA-1:three_prime_utr;Parent=Msa0833310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
