Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene002126.t1 | XP_003593096.1 | 97.8 | 185 | 4 | 0 | 20 | 204 | 44 | 228 | 2.90E-96 | 361.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene002126.t1 | A4FV84 | 53.6 | 166 | 76 | 1 | 23 | 188 | 47 | 211 | 1.9e-43 | 177.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene002126.t1 | A2Q489 | 97.8 | 185 | 4 | 0 | 20 | 204 | 44 | 228 | 2.1e-96 | 361.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene002126.t1 | MTR_2g007780 | 97.838 | 185 | 4 | 0 | 20 | 204 | 44 | 228 | 4.19e-133 | 373 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene002126.t1 | AT1G25260 | 70.520 | 173 | 50 | 1 | 22 | 194 | 46 | 217 | 7.85e-86 | 253 |
Find 39 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCGAAATTGAAAGAGTTT+AGG | 0.242754 | 2.3:+74859300 | MS.gene002126:CDS |
| CTTTGAAACTTTGTGAAGAT+TGG | 0.248050 | 2.3:-74859414 | None:intergenic |
| TTCGAAATTGAAAGAGTTTA+GGG | 0.248422 | 2.3:+74859301 | MS.gene002126:CDS |
| AGAGCAGTTCACACATGATA+TGG | 0.322264 | 2.3:+74860816 | MS.gene002126:CDS |
| GACTGAACCTGGTTTGTAGA+TGG | 0.358071 | 2.3:+74861811 | MS.gene002126:CDS |
| TTTGAAACTTTGTGAAGATT+GGG | 0.382034 | 2.3:-74859413 | None:intergenic |
| ACCTGAAGCATCTCGTATAC+TGG | 0.389289 | 2.3:+74861027 | MS.gene002126:CDS |
| GAACAGGCATGCCTTGCTTC+CGG | 0.401326 | 2.3:-74860849 | None:intergenic |
| AAAGTAATGCAAGTTGCTAT+TGG | 0.403753 | 2.3:+74859365 | MS.gene002126:CDS |
| CAGCTATTGCGTGGAGATGC+TGG | 0.406333 | 2.3:+74860037 | MS.gene002126:intron |
| GTACCTTTATTTAACCGAAC+AGG | 0.425105 | 2.3:-74860865 | None:intergenic |
| CATTGTGTGATTGATTTGTA+AGG | 0.429355 | 2.3:-74857786 | None:intergenic |
| ATGCCTGTTCGGTTAAATAA+AGG | 0.445190 | 2.3:+74860862 | MS.gene002126:CDS |
| ACTGAACCTGGTTTGTAGAT+GGG | 0.448280 | 2.3:+74861812 | MS.gene002126:CDS |
| TAGGCTGTTTAATGAATTTG+AGG | 0.448398 | 2.3:+74860406 | MS.gene002126:intron |
| ACCAGTATACGAGATGCTTC+AGG | 0.450575 | 2.3:-74861028 | None:intergenic |
| TCCAAAATTCACAGGTGTTG+TGG | 0.453240 | 2.3:+74860958 | MS.gene002126:intron |
| GGAAGCAAGGCATGCCTGTT+CGG | 0.453618 | 2.3:+74860851 | MS.gene002126:CDS |
| TCATGTGTGAACTGCTCTAA+AGG | 0.461609 | 2.3:-74860811 | None:intergenic |
| ATGCCTTGCTTCCGGAGAAA+AGG | 0.467064 | 2.3:-74860841 | None:intergenic |
| GGATGCGACTTTGCAAGAAC+AGG | 0.475150 | 2.3:+74860428 | MS.gene002126:CDS |
| CAATCTTCACAAAGTTTCAA+AGG | 0.483461 | 2.3:+74859415 | MS.gene002126:CDS |
| GACTTTGTTGTTTGTGAGGA+GGG | 0.491569 | 2.3:+74860992 | MS.gene002126:CDS |
| GGCTACGTTTCGACTGAACC+TGG | 0.495680 | 2.3:+74861800 | MS.gene002126:CDS |
| GAACTCTACATTGATGGGCC+TGG | 0.523108 | 2.3:+74861852 | MS.gene002126:CDS |
| AGGCTGTTTAATGAATTTGA+GGG | 0.523767 | 2.3:+74860407 | MS.gene002126:intron |
| CTGAACCTGGTTTGTAGATG+GGG | 0.535144 | 2.3:+74861813 | MS.gene002126:CDS |
| CATTCAACATCTGAATCGCC+AGG | 0.535824 | 2.3:-74861870 | None:intergenic |
| ACTGTTTCAGGTTGAACTCA+AGG | 0.537015 | 2.3:+74860783 | MS.gene002126:intron |
| GCGTTTGATGGGAAATATGA+TGG | 0.540790 | 2.3:+74861779 | MS.gene002126:intron |
| TTCTGACTTTGTTGTTTGTG+AGG | 0.545701 | 2.3:+74860988 | MS.gene002126:CDS |
| TGACTTTGTTGTTTGTGAGG+AGG | 0.559551 | 2.3:+74860991 | MS.gene002126:CDS |
| TGTCTAAAGAAGAAGTTGAA+AGG | 0.565730 | 2.3:+74860077 | MS.gene002126:CDS |
| AAAACTAACGACTAATGAAG+AGG | 0.579398 | 2.3:+74857819 | MS.gene002126:CDS |
| CAGAACCCCATCTACAAACC+AGG | 0.589817 | 2.3:-74861818 | None:intergenic |
| CGAGATGCTTCAGGTGACAA+AGG | 0.595978 | 2.3:-74861019 | None:intergenic |
| GGTTTGTAGATGGGGTTCTG+AGG | 0.610326 | 2.3:+74861821 | MS.gene002126:CDS |
| TTTCAGGTTGAACTCAAGGA+GGG | 0.645581 | 2.3:+74860787 | MS.gene002126:intron |
| GTTTCAGGTTGAACTCAAGG+AGG | 0.696156 | 2.3:+74860786 | MS.gene002126:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAAAAATGAAAGATATA+GGG | - | chr2.3:74861324-74861343 | None:intergenic | 10.0% |
| !! | TATATAAAAATGAAAGATAT+AGG | - | chr2.3:74861325-74861344 | None:intergenic | 10.0% |
| !! | AAAAAAAAAATCAAACCAAA+CGG | - | chr2.3:74859642-74859661 | None:intergenic | 15.0% |
| !! | AACTAAAAAGTAATTAATGA+TGG | - | chr2.3:74861468-74861487 | None:intergenic | 15.0% |
| !! | ATATTCATAAAAAATGTAAG+AGG | - | chr2.3:74859988-74860007 | None:intergenic | 15.0% |
| !! | GGATAATATTAATCTATAAT+CGG | + | chr2.3:74857931-74857950 | MS.gene002126:intron | 15.0% |
| !!! | TTTGTTTTATTTTTTTGTTG+TGG | + | chr2.3:74859467-74859486 | MS.gene002126:intron | 15.0% |
| !!! | TTTTTATTGATGCTATTTAT+AGG | + | chr2.3:74860387-74860406 | MS.gene002126:intron | 15.0% |
| !! | AAAAAGTAATTAATGATGGT+GGG | - | chr2.3:74861464-74861483 | None:intergenic | 20.0% |
| !! | AAATAGCATCAATAAAAATC+AGG | - | chr2.3:74860385-74860404 | None:intergenic | 20.0% |
| !! | ATTAATTACTTCAATAACCA+AGG | - | chr2.3:74861651-74861670 | None:intergenic | 20.0% |
| !! | CAAATTTAATGTACGATTAT+TGG | + | chr2.3:74860144-74860163 | MS.gene002126:intron | 20.0% |
| !! | GAAAGAAAATAGTGAATATA+GGG | + | chr2.3:74858711-74858730 | MS.gene002126:intron | 20.0% |
| !! | GAAATTAGTAACACTAAATA+TGG | - | chr2.3:74861221-74861240 | None:intergenic | 20.0% |
| !! | TAAAAAGTAATTAATGATGG+TGG | - | chr2.3:74861465-74861484 | None:intergenic | 20.0% |
| !! | TATAACAAAATTGACTGATA+AGG | + | chr2.3:74858346-74858365 | MS.gene002126:intron | 20.0% |
| !! | TGATGTACATACTATAATAA+TGG | - | chr2.3:74861718-74861737 | None:intergenic | 20.0% |
| !! | TTACTATTGAGAATTTAACA+AGG | - | chr2.3:74861608-74861627 | None:intergenic | 20.0% |
| !!! | AATTTTGCTTGAATAAACAT+TGG | + | chr2.3:74860280-74860299 | MS.gene002126:intron | 20.0% |
| !!! | ACATCAAAGAACAAAATTTT+AGG | + | chr2.3:74858024-74858043 | MS.gene002126:intron | 20.0% |
| !!! | ATGCAAATAAATAAGCTTTT+AGG | + | chr2.3:74859686-74859705 | MS.gene002126:intron | 20.0% |
| !!! | ATGTGATTTTGATTAGTTTT+TGG | + | chr2.3:74859499-74859518 | MS.gene002126:intron | 20.0% |
| !!! | CACAAAGAATTGATAATTAA+TGG | + | chr2.3:74859215-74859234 | MS.gene002126:intron | 20.0% |
| !!! | CTTGATATTAAAAATTTTCG+TGG | + | chr2.3:74858076-74858095 | MS.gene002126:intron | 20.0% |
| !!! | GCTTTTTTAATCTCATTAAT+GGG | - | chr2.3:74858898-74858917 | None:intergenic | 20.0% |
| !!! | TATTTAGTGTTACTAATTTC+AGG | + | chr2.3:74861221-74861240 | MS.gene002126:intron | 20.0% |
| !!! | TCATTTGAAAAGTTGTTTTT+CGG | - | chr2.3:74859855-74859874 | None:intergenic | 20.0% |
| !!! | TCATTTTCTTAAATCATTAC+CGG | - | chr2.3:74860587-74860606 | None:intergenic | 20.0% |
| !!! | TTGAAGTAATTAATTAGTCT+CGG | + | chr2.3:74861657-74861676 | MS.gene002126:intron | 20.0% |
| !!! | TTTTTGAAAATCTGTAACAA+AGG | + | chr2.3:74859890-74859909 | MS.gene002126:intron | 20.0% |
| ! | AAAAATGTATAGCATCGTTT+AGG | - | chr2.3:74858519-74858538 | None:intergenic | 25.0% |
| ! | AAATCTAAGAGAAACAAACA+AGG | + | chr2.3:74859064-74859083 | MS.gene002126:intron | 25.0% |
| ! | AGCTAAAATTGTATCTTCAT+CGG | + | chr2.3:74859729-74859748 | MS.gene002126:intron | 25.0% |
| ! | ATTATAGGTTTCTACTAACA+AGG | - | chr2.3:74860524-74860543 | None:intergenic | 25.0% |
| ! | ATTCGAAATTGAAAGAGTTT+AGG | + | chr2.3:74859300-74859319 | MS.gene002126:CDS | 25.0% |
| ! | CAAACAAGAAAAAATCAATG+GGG | - | chr2.3:74861373-74861392 | None:intergenic | 25.0% |
| ! | CCAAACAAGAAAAAATCAAT+GGG | - | chr2.3:74861374-74861393 | None:intergenic | 25.0% |
| ! | CTGATATTGTAAGTTCTATT+GGG | - | chr2.3:74861115-74861134 | None:intergenic | 25.0% |
| ! | GAAATGGAGAGAATAATAAA+TGG | + | chr2.3:74861527-74861546 | MS.gene002126:intron | 25.0% |
| ! | GGAAAGAAAATAGTGAATAT+AGG | + | chr2.3:74858710-74858729 | MS.gene002126:intron | 25.0% |
| ! | TAAAAATGAAAGATATAGGG+AGG | - | chr2.3:74861321-74861340 | None:intergenic | 25.0% |
| ! | TATAGTAGCTGATATTCAAT+TGG | + | chr2.3:74860212-74860231 | MS.gene002126:intron | 25.0% |
| ! | TATTATTGATAAGCTTGTCA+AGG | - | chr2.3:74859778-74859797 | None:intergenic | 25.0% |
| ! | TTCGAAATTGAAAGAGTTTA+GGG | + | chr2.3:74859301-74859320 | MS.gene002126:CDS | 25.0% |
| !! | AATTAGTGTAGAAACCTTTT+AGG | + | chr2.3:74858627-74858646 | MS.gene002126:intron | 25.0% |
| !! | ACTCATTCAATTAAAAGTGT+TGG | + | chr2.3:74860655-74860674 | MS.gene002126:intron | 25.0% |
| !! | ATTTTGAACTCTACATTGAT+GGG | + | chr2.3:74861847-74861866 | MS.gene002126:CDS | 25.0% |
| !! | CTGATATTCAATTGGTAATT+TGG | + | chr2.3:74860220-74860239 | MS.gene002126:intron | 25.0% |
| !! | GATGGTATTGAAACAAAAAA+CGG | + | chr2.3:74858368-74858387 | MS.gene002126:intron | 25.0% |
| !! | TATAATAATGGTGCTAATTG+AGG | - | chr2.3:74861706-74861725 | None:intergenic | 25.0% |
| !! | TTTGAAACTTTGTGAAGATT+GGG | - | chr2.3:74859416-74859435 | None:intergenic | 25.0% |
| !!! | AAAAACGGATTGAATGAAAT+AGG | + | chr2.3:74858383-74858402 | MS.gene002126:intron | 25.0% |
| !!! | ATCGTTAACCTTTTTCAATA+GGG | + | chr2.3:74860303-74860322 | MS.gene002126:intron | 25.0% |
| !!! | CATTTGAAAAGTTGTTTTTC+GGG | - | chr2.3:74859854-74859873 | None:intergenic | 25.0% |
| !!! | CCATTGATTTTTTCTTGTTT+GGG | + | chr2.3:74861372-74861391 | MS.gene002126:intron | 25.0% |
| !!! | GGCTTTTTTAATCTCATTAA+TGG | - | chr2.3:74858899-74858918 | None:intergenic | 25.0% |
| !!! | GTCAATTATTAGTCTTCAAT+TGG | - | chr2.3:74860935-74860954 | None:intergenic | 25.0% |
| !!! | TCTATTTTAAAACGAAACGA+TGG | - | chr2.3:74857963-74857982 | None:intergenic | 25.0% |
| !!! | TGAAGGCATTTACATATTTT+TGG | + | chr2.3:74858827-74858846 | MS.gene002126:intron | 25.0% |
| !!! | TGTTTGTTTCTCTTAGATTT+TGG | - | chr2.3:74859064-74859083 | None:intergenic | 25.0% |
| !!! | TTGGAGATTTTTAAGAAAAG+CGG | + | chr2.3:74859518-74859537 | MS.gene002126:intron | 25.0% |
| AAAACTAACGACTAATGAAG+AGG | + | chr2.3:74857819-74857838 | MS.gene002126:CDS | 30.0% | |
| AAAATTTCACAGTCACATTG+AGG | + | chr2.3:74859008-74859027 | MS.gene002126:intron | 30.0% | |
| AAAGAGCTACACATAATTGA+TGG | + | chr2.3:74858414-74858433 | MS.gene002126:intron | 30.0% | |
| AAAGTAATGCAAGTTGCTAT+TGG | + | chr2.3:74859365-74859384 | MS.gene002126:CDS | 30.0% | |
| AAATATGTAAATGCCTTCAG+CGG | - | chr2.3:74858826-74858845 | None:intergenic | 30.0% | |
| AAATTTCACAGTCACATTGA+GGG | + | chr2.3:74859009-74859028 | MS.gene002126:intron | 30.0% | |
| AAGAGCTACACATAATTGAT+GGG | + | chr2.3:74858415-74858434 | MS.gene002126:intron | 30.0% | |
| ACAAAATAAGCCAATCCAAA+CGG | + | chr2.3:74859827-74859846 | MS.gene002126:intron | 30.0% | |
| ACAAAATTGACTGATAAGGA+TGG | + | chr2.3:74858350-74858369 | MS.gene002126:intron | 30.0% | |
| ACATCATCAACGTTATAATG+TGG | + | chr2.3:74861732-74861751 | MS.gene002126:intron | 30.0% | |
| ACCCTTGCAAAATCAAAATT+AGG | + | chr2.3:74858973-74858992 | MS.gene002126:intron | 30.0% | |
| AGGCTGTTTAATGAATTTGA+GGG | + | chr2.3:74860407-74860426 | MS.gene002126:intron | 30.0% | |
| ATTTGAGAAGGATTCCTAAA+AGG | - | chr2.3:74858644-74858663 | None:intergenic | 30.0% | |
| CAATCTTCACAAAGTTTCAA+AGG | + | chr2.3:74859415-74859434 | MS.gene002126:CDS | 30.0% | |
| CATCAATAAAAATCAGGTTC+TGG | - | chr2.3:74860379-74860398 | None:intergenic | 30.0% | |
| CCAATAGAACTTACAATATC+AGG | + | chr2.3:74861113-74861132 | MS.gene002126:intron | 30.0% | |
| CCCAAACAAGAAAAAATCAA+TGG | - | chr2.3:74861375-74861394 | None:intergenic | 30.0% | |
| CCCTTGCAAAATCAAAATTA+GGG | + | chr2.3:74858974-74858993 | MS.gene002126:intron | 30.0% | |
| CCTGATATTGTAAGTTCTAT+TGG | - | chr2.3:74861116-74861135 | None:intergenic | 30.0% | |
| GATATGCTAAACATGTTTCT+GGG | + | chr2.3:74860252-74860271 | MS.gene002126:intron | 30.0% | |
| GGATAATGTGAACAATCAAA+TGG | - | chr2.3:74861352-74861371 | None:intergenic | 30.0% | |
| TAACATCAAACATGCATAAC+AGG | - | chr2.3:74858464-74858483 | None:intergenic | 30.0% | |
| TAGGCTGTTTAATGAATTTG+AGG | + | chr2.3:74860406-74860425 | MS.gene002126:intron | 30.0% | |
| TGACACATAAAATAGACAGT+GGG | + | chr2.3:74861420-74861439 | MS.gene002126:intron | 30.0% | |
| TGATATGCTAAACATGTTTC+TGG | + | chr2.3:74860251-74860270 | MS.gene002126:intron | 30.0% | |
| TGTCTAAAGAAGAAGTTGAA+AGG | + | chr2.3:74860077-74860096 | MS.gene002126:CDS | 30.0% | |
| TTCTATCAGAAACATGCTTT+AGG | - | chr2.3:74857905-74857924 | None:intergenic | 30.0% | |
| TTGAATGAAATCACACATGT+CGG | + | chr2.3:74860612-74860631 | MS.gene002126:intron | 30.0% | |
| TTGACACATAAAATAGACAG+TGG | + | chr2.3:74861419-74861438 | MS.gene002126:intron | 30.0% | |
| ! | ATATGCTAAACATGTTTCTG+GGG | + | chr2.3:74860253-74860272 | MS.gene002126:intron | 30.0% |
| ! | ATGTTATGATTGTTTCTCCT+AGG | + | chr2.3:74858288-74858307 | MS.gene002126:intron | 30.0% |
| ! | ATGTTTCTGATAGAAAGCTT+TGG | + | chr2.3:74857910-74857929 | MS.gene002126:intron | 30.0% |
| ! | ATTAAAAATTTTCGTGGTCG+AGG | + | chr2.3:74858082-74858101 | MS.gene002126:intron | 30.0% |
| ! | GATTTTGAACTCTACATTGA+TGG | + | chr2.3:74861846-74861865 | MS.gene002126:CDS | 30.0% |
| ! | TGCATAACGACAATCTTTTA+TGG | - | chr2.3:74858161-74858180 | None:intergenic | 30.0% |
| !! | ATTATTAGTCTTCAATTGGC+AGG | - | chr2.3:74860931-74860950 | None:intergenic | 30.0% |
| !! | ATTTTCTGAGAAGCTACTAA+TGG | + | chr2.3:74859615-74859634 | MS.gene002126:intron | 30.0% |
| !! | CATTGTGTGATTGATTTGTA+AGG | - | chr2.3:74857789-74857808 | None:intergenic | 30.0% |
| !! | CTTTGAAACTTTGTGAAGAT+TGG | - | chr2.3:74859417-74859436 | None:intergenic | 30.0% |
| !! | CTTTTAATTGAATGAGTGTC+TGG | - | chr2.3:74860652-74860671 | None:intergenic | 30.0% |
| !! | GATTTTGGCATTTTGAACTA+TGG | - | chr2.3:74859049-74859068 | None:intergenic | 30.0% |
| !! | TTTTCTGAGAAGCTACTAAT+GGG | + | chr2.3:74859616-74859635 | MS.gene002126:intron | 30.0% |
| !!! | ACCCTAATTTTGATTTTGCA+AGG | - | chr2.3:74858978-74858997 | None:intergenic | 30.0% |
| !!! | CCCATTGATTTTTTCTTGTT+TGG | + | chr2.3:74861371-74861390 | MS.gene002126:intron | 30.0% |
| !!! | CCCTAATTTTGATTTTGCAA+GGG | - | chr2.3:74858977-74858996 | None:intergenic | 30.0% |
| !!! | CTAGATTCAACCTACTTTTT+CGG | - | chr2.3:74860465-74860484 | None:intergenic | 30.0% |
| !!! | GATCGTTAACCTTTTTCAAT+AGG | + | chr2.3:74860302-74860321 | MS.gene002126:intron | 30.0% |
| !!! | TCAAGTAGCAAGTTTTTTCT+TGG | + | chr2.3:74859335-74859354 | MS.gene002126:CDS | 30.0% |
| !!! | TCGTTAACCTTTTTCAATAG+GGG | + | chr2.3:74860304-74860323 | MS.gene002126:intron | 30.0% |
| !!! | TGATTTTTTCTTGTTTGGGT+GGG | + | chr2.3:74861376-74861395 | MS.gene002126:intron | 30.0% |
| !!! | TTGATTTTTTCTTGTTTGGG+TGG | + | chr2.3:74861375-74861394 | MS.gene002126:intron | 30.0% |
| AAAATAGTGAATATAGGGCG+AGG | + | chr2.3:74858716-74858735 | MS.gene002126:intron | 35.0% | |
| AAGACAACGAAAAAAGGAAG+AGG | + | chr2.3:74859191-74859210 | MS.gene002126:intron | 35.0% | |
| AATAACCAAGGTCAAGATGT+TGG | - | chr2.3:74861639-74861658 | None:intergenic | 35.0% | |
| AATAACTACTTCCTGCCTAT+GGG | + | chr2.3:74861187-74861206 | MS.gene002126:intron | 35.0% | |
| AATATGGTCGAATAACCCAT+AGG | - | chr2.3:74861205-74861224 | None:intergenic | 35.0% | |
| ACTTGTGTGGTTCTTGAAAA+AGG | + | chr2.3:74858483-74858502 | MS.gene002126:intron | 35.0% | |
| AGAGCTACACATAATTGATG+GGG | + | chr2.3:74858416-74858435 | MS.gene002126:intron | 35.0% | |
| ATAGGCAGGAAGTAGTTATT+AGG | - | chr2.3:74861187-74861206 | None:intergenic | 35.0% | |
| ATCTCTCCAAATGGATGAAA+TGG | + | chr2.3:74861511-74861530 | MS.gene002126:intron | 35.0% | |
| ATGCCTGTTCGGTTAAATAA+AGG | + | chr2.3:74860862-74860881 | MS.gene002126:CDS | 35.0% | |
| CAAAATAAGCCAATCCAAAC+GGG | + | chr2.3:74859828-74859847 | MS.gene002126:intron | 35.0% | |
| CACTCGTTAAATGATTGCAA+CGG | - | chr2.3:74858792-74858811 | None:intergenic | 35.0% | |
| CAGCATAAATTCGTACTTGA+GGG | + | chr2.3:74858671-74858690 | MS.gene002126:intron | 35.0% | |
| CTCTCAAAGACAACGAAAAA+AGG | + | chr2.3:74859185-74859204 | MS.gene002126:intron | 35.0% | |
| GGAGAGAATAATAAATGGAG+AGG | + | chr2.3:74861532-74861551 | MS.gene002126:intron | 35.0% | |
| TAATAACTACTTCCTGCCTA+TGG | + | chr2.3:74861186-74861205 | MS.gene002126:intron | 35.0% | |
| TAGAGCAAGTTATAGTCGAT+GGG | - | chr2.3:74858203-74858222 | None:intergenic | 35.0% | |
| TAGGAGACATGATCAAATTC+AGG | + | chr2.3:74858307-74858326 | MS.gene002126:intron | 35.0% | |
| TGAATTTGATCATGTCTCCT+AGG | - | chr2.3:74858308-74858327 | None:intergenic | 35.0% | |
| TGTGTCTATATCTCTCCAAA+TGG | + | chr2.3:74861502-74861521 | MS.gene002126:intron | 35.0% | |
| TTCTCTCCATTTCATCCATT+TGG | - | chr2.3:74861520-74861539 | None:intergenic | 35.0% | |
| TTGACGTTTCCAAAATTCAC+AGG | + | chr2.3:74860950-74860969 | MS.gene002126:intron | 35.0% | |
| TTTCAAGATCTGACTGTTTC+AGG | + | chr2.3:74860771-74860790 | MS.gene002126:intron | 35.0% | |
| ! | ATGATATGGAACCTTTTCTC+CGG | + | chr2.3:74860830-74860849 | MS.gene002126:CDS | 35.0% |
| ! | CATGTTTGATGTTACTTGTG+TGG | + | chr2.3:74858470-74858489 | MS.gene002126:intron | 35.0% |
| ! | GTACCTTTATTTAACCGAAC+AGG | - | chr2.3:74860868-74860887 | None:intergenic | 35.0% |
| ! | TTTGGCATTTTGAACTATGG+AGG | - | chr2.3:74859046-74859065 | None:intergenic | 35.0% |
| !! | TAAAAGTGTTGGTGCTACAA+AGG | + | chr2.3:74860666-74860685 | MS.gene002126:intron | 35.0% |
| !! | TTCTGACTTTGTTGTTTGTG+AGG | + | chr2.3:74860988-74861007 | MS.gene002126:CDS | 35.0% |
| !!! | CGTTAACCTTTTTCAATAGG+GGG | + | chr2.3:74860305-74860324 | MS.gene002126:intron | 35.0% |
| !!! | GAGGGTTTTTGAAATGAAGA+GGG | + | chr2.3:74858689-74858708 | MS.gene002126:intron | 35.0% |
| !!! | GTTAACCTTTTTCAATAGGG+GGG | + | chr2.3:74860306-74860325 | MS.gene002126:intron | 35.0% |
| !!! | TGAGGGTTTTTGAAATGAAG+AGG | + | chr2.3:74858688-74858707 | MS.gene002126:intron | 35.0% |
| AAGATAGAACGAAGTGGAGT+AGG | + | chr2.3:74861247-74861266 | MS.gene002126:intron | 40.0% | |
| AATATGCGTGTTGAGTGGAA+TGG | + | chr2.3:74858121-74858140 | MS.gene002126:intron | 40.0% | |
| ACTCCACTTCGTTCTATCTT+TGG | - | chr2.3:74861247-74861266 | None:intergenic | 40.0% | |
| AGAGCAGTTCACACATGATA+TGG | + | chr2.3:74860816-74860835 | MS.gene002126:CDS | 40.0% | |
| AGTGGGTCCTACTATTATGT+GGG | + | chr2.3:74861437-74861456 | MS.gene002126:intron | 40.0% | |
| AGTTGAAGTTGCACTACTCT+AGG | + | chr2.3:74861144-74861163 | MS.gene002126:intron | 40.0% | |
| ATAGTCGATGGGAAAGACAA+TGG | - | chr2.3:74858192-74858211 | None:intergenic | 40.0% | |
| ATATGCGTGTTGAGTGGAAT+GGG | + | chr2.3:74858122-74858141 | MS.gene002126:intron | 40.0% | |
| CTAGAGCAAGTTATAGTCGA+TGG | - | chr2.3:74858204-74858223 | None:intergenic | 40.0% | |
| GAAAACCCCCCTATTGAAAA+AGG | - | chr2.3:74860314-74860333 | None:intergenic | 40.0% | |
| GCAGCATAAATTCGTACTTG+AGG | + | chr2.3:74858670-74858689 | MS.gene002126:intron | 40.0% | |
| GCGTTTGATGGGAAATATGA+TGG | + | chr2.3:74861779-74861798 | MS.gene002126:intron | 40.0% | |
| GTTGAAGTTGCACTACTCTA+GGG | + | chr2.3:74861145-74861164 | MS.gene002126:intron | 40.0% | |
| TACGAAAAAGTTATCAGCCG+CGG | + | chr2.3:74858756-74858775 | MS.gene002126:intron | 40.0% | |
| TCATGTGTGAACTGCTCTAA+AGG | - | chr2.3:74860814-74860833 | None:intergenic | 40.0% | |
| TCTATCCAACATCTTGACCT+TGG | + | chr2.3:74861631-74861650 | MS.gene002126:intron | 40.0% | |
| TGCTGCAGAATCATTTGAGA+AGG | - | chr2.3:74858656-74858675 | None:intergenic | 40.0% | |
| TGTCTGTGTAGGTGCATTAT+AGG | - | chr2.3:74860539-74860558 | None:intergenic | 40.0% | |
| ! | ACTGAACCTGGTTTGTAGAT+GGG | + | chr2.3:74861812-74861831 | MS.gene002126:CDS | 40.0% |
| ! | TCCAAAATTCACAGGTGTTG+TGG | + | chr2.3:74860958-74860977 | MS.gene002126:intron | 40.0% |
| ! | TCCACAACACCTGTGAATTT+TGG | - | chr2.3:74860962-74860981 | None:intergenic | 40.0% |
| !! | ACTGTTTCAGGTTGAACTCA+AGG | + | chr2.3:74860783-74860802 | MS.gene002126:intron | 40.0% |
| !! | GACTTTGTTGTTTGTGAGGA+GGG | + | chr2.3:74860992-74861011 | MS.gene002126:CDS | 40.0% |
| !! | GTTTTGTTACAGCTATTGCG+TGG | + | chr2.3:74860028-74860047 | MS.gene002126:intron | 40.0% |
| !! | TCGACATGTCAGTGTTGTTT+CGG | - | chr2.3:74860562-74860581 | None:intergenic | 40.0% |
| !! | TGACTTTGTTGTTTGTGAGG+AGG | + | chr2.3:74860991-74861010 | MS.gene002126:CDS | 40.0% |
| !! | TTTCAGGTTGAACTCAAGGA+GGG | + | chr2.3:74860787-74860806 | MS.gene002126:intron | 40.0% |
| !!! | GATTCAACCTACTTTTTCGG+TGG | - | chr2.3:74860462-74860481 | None:intergenic | 40.0% |
| !!! | TTTTTTCTTGTTTGGGTGGG+TGG | + | chr2.3:74861379-74861398 | MS.gene002126:intron | 40.0% |
| ACCAGTATACGAGATGCTTC+AGG | - | chr2.3:74861031-74861050 | None:intergenic | 45.0% | |
| ACTTGTACGTTGTGTCTCGT+TGG | - | chr2.3:74858943-74858962 | None:intergenic | 45.0% | |
| AGCATTGCCACCGAAAAAGT+AGG | + | chr2.3:74860452-74860471 | MS.gene002126:intron | 45.0% | |
| AGGCCAAAGATAGAACGAAG+TGG | + | chr2.3:74861241-74861260 | MS.gene002126:intron | 45.0% | |
| ATAGCACAGAGCAGAGGATT+TGG | - | chr2.3:74861070-74861089 | None:intergenic | 45.0% | |
| ATAGTGAATATAGGGCGAGG+TGG | + | chr2.3:74858719-74858738 | MS.gene002126:intron | 45.0% | |
| ATGGAGAGGATCTTAACTCG+TGG | + | chr2.3:74861546-74861565 | MS.gene002126:intron | 45.0% | |
| CAGTGGGTCCTACTATTATG+TGG | + | chr2.3:74861436-74861455 | MS.gene002126:intron | 45.0% | |
| CATTCAACATCTGAATCGCC+AGG | - | chr2.3:74861873-74861892 | None:intergenic | 45.0% | |
| CCAACAATATGCGTGTTGAG+TGG | + | chr2.3:74858116-74858135 | MS.gene002126:intron | 45.0% | |
| CCACTCAACACGCATATTGT+TGG | - | chr2.3:74858119-74858138 | None:intergenic | 45.0% | |
| GAGCAACTACAGGATATGTC+AGG | - | chr2.3:74860707-74860726 | None:intergenic | 45.0% | |
| TAGCACAGAGCAGAGGATTT+GGG | - | chr2.3:74861069-74861088 | None:intergenic | 45.0% | |
| TGGAGAGGATCTTAACTCGT+GGG | + | chr2.3:74861547-74861566 | MS.gene002126:intron | 45.0% | |
| ! | ACCTGAAGCATCTCGTATAC+TGG | + | chr2.3:74861027-74861046 | MS.gene002126:CDS | 45.0% |
| ! | CTGAACCTGGTTTGTAGATG+GGG | + | chr2.3:74861813-74861832 | MS.gene002126:CDS | 45.0% |
| ! | GACTGAACCTGGTTTGTAGA+TGG | + | chr2.3:74861811-74861830 | MS.gene002126:CDS | 45.0% |
| ! | TACGTTGTGTCTCGTTGGTT+CGG | - | chr2.3:74858938-74858957 | None:intergenic | 45.0% |
| ! | TGTGCTGGCGAACATAAATG+TGG | + | chr2.3:74861089-74861108 | MS.gene002126:intron | 45.0% |
| !! | GTTTCAGGTTGAACTCAAGG+AGG | + | chr2.3:74860786-74860805 | MS.gene002126:intron | 45.0% |
| !! | TGTTGTTTCGGTGTCTGTGT+AGG | - | chr2.3:74860550-74860569 | None:intergenic | 45.0% |
| !! | TTCGGGTTGGGCTTATAAGT+GGG | - | chr2.3:74858920-74858939 | None:intergenic | 45.0% |
| ATGCCTTGCTTCCGGAGAAA+AGG | - | chr2.3:74860844-74860863 | None:intergenic | 50.0% | |
| CAACACTGACATGTCGACAC+CGG | + | chr2.3:74860565-74860584 | MS.gene002126:intron | 50.0% | |
| CAGAACCCCATCTACAAACC+AGG | - | chr2.3:74861821-74861840 | None:intergenic | 50.0% | |
| CCAGATGCATGAGCAACTAC+AGG | - | chr2.3:74860717-74860736 | None:intergenic | 50.0% | |
| CCTGTAGTTGCTCATGCATC+TGG | + | chr2.3:74860714-74860733 | MS.gene002126:intron | 50.0% | |
| CGAGATGCTTCAGGTGACAA+AGG | - | chr2.3:74861022-74861041 | None:intergenic | 50.0% | |
| GAGAGGATCTTAACTCGTGG+GGG | + | chr2.3:74861549-74861568 | MS.gene002126:intron | 50.0% | |
| GGAGAGGATCTTAACTCGTG+GGG | + | chr2.3:74861548-74861567 | MS.gene002126:intron | 50.0% | |
| GGATGCGACTTTGCAAGAAC+AGG | + | chr2.3:74860428-74860447 | MS.gene002126:CDS | 50.0% | |
| GGTGGGACCCACATAATAGT+AGG | - | chr2.3:74861447-74861466 | None:intergenic | 50.0% | |
| GGTTTGTAGATGGGGTTCTG+AGG | + | chr2.3:74861821-74861840 | MS.gene002126:CDS | 50.0% | |
| TCGTGGTCGAGGATATGATG+TGG | + | chr2.3:74858093-74858112 | MS.gene002126:intron | 50.0% | |
| TGGTCGAATAACCCATAGGC+AGG | - | chr2.3:74861201-74861220 | None:intergenic | 50.0% | |
| TTTGGGTGGGTGGTGCAATT+TGG | + | chr2.3:74861389-74861408 | MS.gene002126:intron | 50.0% | |
| ! | GAACCTTTTCTCCGGAAGCA+AGG | + | chr2.3:74860838-74860857 | MS.gene002126:CDS | 50.0% |
| ! | GAACTCTACATTGATGGGCC+TGG | + | chr2.3:74861852-74861871 | MS.gene002126:CDS | 50.0% |
| ! | GAAGCTACTAATGGGCCGTT+TGG | + | chr2.3:74859624-74859643 | MS.gene002126:intron | 50.0% |
| !! | ACGTTGTGTCTCGTTGGTTC+GGG | - | chr2.3:74858937-74858956 | None:intergenic | 50.0% |
| !! | GTTCGGGTTGGGCTTATAAG+TGG | - | chr2.3:74858921-74858940 | None:intergenic | 50.0% |
| !!! | AGTTGTTTTTCGGGCCCGTT+TGG | - | chr2.3:74859845-74859864 | None:intergenic | 50.0% |
| !!! | TTTTTCGGGCCCGTTTGGAT+TGG | - | chr2.3:74859840-74859859 | None:intergenic | 50.0% |
| CAGCACATAGCACAGAGCAG+AGG | - | chr2.3:74861076-74861095 | None:intergenic | 55.0% | |
| CAGCTATTGCGTGGAGATGC+TGG | + | chr2.3:74860037-74860056 | MS.gene002126:intron | 55.0% | |
| CTCTGCTCTGTGCTATGTGC+TGG | + | chr2.3:74861074-74861093 | MS.gene002126:intron | 55.0% | |
| GAACAGGCATGCCTTGCTTC+CGG | - | chr2.3:74860852-74860871 | None:intergenic | 55.0% | |
| GGAAGCAAGGCATGCCTGTT+CGG | + | chr2.3:74860851-74860870 | MS.gene002126:CDS | 55.0% | |
| GGCTACGTTTCGACTGAACC+TGG | + | chr2.3:74861800-74861819 | MS.gene002126:CDS | 55.0% | |
| TGACAGTTAGCTGCCGCTGA+AGG | + | chr2.3:74858810-74858829 | MS.gene002126:intron | 55.0% | |
| !! | GTGTCTCGTTGGTTCGGGTT+GGG | - | chr2.3:74858932-74858951 | None:intergenic | 55.0% |
| !! | TGTGTCTCGTTGGTTCGGGT+TGG | - | chr2.3:74858933-74858952 | None:intergenic | 55.0% |
| GCAACGGCAGTTAACTGCCG+CGG | - | chr2.3:74858776-74858795 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 74857775 | 74861893 | 74857775 | ID=MS.gene002126 |
| chr2.3 | mRNA | 74857775 | 74861893 | 74857775 | ID=MS.gene002126.t1;Parent=MS.gene002126 |
| chr2.3 | exon | 74857775 | 74857840 | 74857775 | ID=MS.gene002126.t1.exon1;Parent=MS.gene002126.t1 |
| chr2.3 | CDS | 74857775 | 74857840 | 74857775 | ID=cds.MS.gene002126.t1;Parent=MS.gene002126.t1 |
| chr2.3 | exon | 74859290 | 74859436 | 74859290 | ID=MS.gene002126.t1.exon2;Parent=MS.gene002126.t1 |
| chr2.3 | CDS | 74859290 | 74859436 | 74859290 | ID=cds.MS.gene002126.t1;Parent=MS.gene002126.t1 |
| chr2.3 | exon | 74860040 | 74860098 | 74860040 | ID=MS.gene002126.t1.exon3;Parent=MS.gene002126.t1 |
| chr2.3 | CDS | 74860040 | 74860098 | 74860040 | ID=cds.MS.gene002126.t1;Parent=MS.gene002126.t1 |
| chr2.3 | exon | 74860409 | 74860469 | 74860409 | ID=MS.gene002126.t1.exon4;Parent=MS.gene002126.t1 |
| chr2.3 | CDS | 74860409 | 74860469 | 74860409 | ID=cds.MS.gene002126.t1;Parent=MS.gene002126.t1 |
| chr2.3 | exon | 74860793 | 74860883 | 74860793 | ID=MS.gene002126.t1.exon5;Parent=MS.gene002126.t1 |
| chr2.3 | CDS | 74860793 | 74860883 | 74860793 | ID=cds.MS.gene002126.t1;Parent=MS.gene002126.t1 |
| chr2.3 | exon | 74860972 | 74861048 | 74860972 | ID=MS.gene002126.t1.exon6;Parent=MS.gene002126.t1 |
| chr2.3 | CDS | 74860972 | 74861048 | 74860972 | ID=cds.MS.gene002126.t1;Parent=MS.gene002126.t1 |
| chr2.3 | exon | 74861780 | 74861893 | 74861780 | ID=MS.gene002126.t1.exon7;Parent=MS.gene002126.t1 |
| chr2.3 | CDS | 74861780 | 74861893 | 74861780 | ID=cds.MS.gene002126.t1;Parent=MS.gene002126.t1 |
| Gene Sequence |
| Protein sequence |
