AlfalfaGEDB | MS.gene04336

M. sativa cultivar XinJiangDaYe / MS.gene04336

KEGG: K14835
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009987 GO:0016070 GO:0016072 GO:0016740 GO:0016741 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363
PFAM: PF01189.20 PF17125.8

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene04336.t1	XP_013460054.1	90.7	648	40	3	1	629	1	647	6.50E-246	860.1

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene04336.t1	Q922K7	62.3	403	133	4	114	504	186	581	9.8e-142	505.4

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene04336.t1	A0A072V7D7	90.7	648	40	3	1	629	1	647	4.7e-246	860.1

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene050985	MS.gene04336	PPI
MS.gene04336	MS.gene09845	PPI
MS.gene04336	MS.gene066301	PPI
MS.gene04336	MS.gene80786	PPI
MS.gene04336	MS.gene029242	PPI
MS.gene04336	MS.gene014499	PPI
MS.gene81498	MS.gene04336	PPI
MS.gene04336	MS.gene003859	PPI
MS.gene04336	MS.gene43970	PPI
MS.gene04336	MS.gene40564	PPI
MS.gene04336	MS.gene022752	PPI
MS.gene032998	MS.gene04336	PPI
MS.gene04336	MS.gene059726	PPI
MS.gene04336	MS.gene064682	PPI
MS.gene04336	MS.gene065345	PPI
MS.gene04336	MS.gene41916	PPI
MS.gene063385	MS.gene04336	PPI
MS.gene04336	MS.gene034931	PPI
MS.gene044537	MS.gene04336	PPI
MS.gene04336	MS.gene80570	PPI
MS.gene04336	MS.gene69196	PPI
MS.gene04336	MS.gene035396	PPI
MS.gene04336	MS.gene056403	PPI
MS.gene04336	MS.gene047125	PPI
MS.gene70551	MS.gene04336	PPI
MS.gene04336	MS.gene071916	PPI
MS.gene83200	MS.gene04336	PPI
MS.gene061905	MS.gene04336	PPI
MS.gene04336	MS.gene07808	PPI
MS.gene04336	MS.gene005096	PPI
MS.gene04336	MS.gene81068	PPI
MS.gene04336	MS.gene46475	PPI
MS.gene04336	MS.gene98681	PPI
MS.gene04336	MS.gene020215	PPI
MS.gene04336	MS.gene024348	PPI
MS.gene04336	MS.gene43350	PPI
MS.gene04336	MS.gene073150	PPI
MS.gene04336	MS.gene08488	PPI
MS.gene04336	MS.gene001986	PPI
MS.gene04336	MS.gene002204	PPI
MS.gene04336	MS.gene061835	PPI
MS.gene04336	MS.gene039132	PPI
MS.gene01635	MS.gene04336	PPI
MS.gene04336	MS.gene81001	PPI
MS.gene047421	MS.gene04336	PPI
MS.gene04336	MS.gene038784	PPI
MS.gene04336	MS.gene002126	PPI
MS.gene04336	MS.gene41329	PPI
MS.gene04336	MS.gene057157	PPI
MS.gene018599	MS.gene04336	PPI
MS.gene04336	MS.gene059878	PPI
MS.gene059369	MS.gene04336	PPI
MS.gene04336	MS.gene060638	PPI
MS.gene04336	MS.gene32556	PPI
MS.gene04336	MS.gene003435	PPI
MS.gene047734	MS.gene04336	PPI
MS.gene04336	MS.gene51868	PPI
MS.gene04336	MS.gene77667	PPI
MS.gene04336	MS.gene28319	PPI
MS.gene04336	MS.gene041557	PPI
MS.gene04336	MS.gene65051	PPI
MS.gene04336	MS.gene64512	PPI
MS.gene04336	MS.gene91244	PPI
MS.gene04336	MS.gene002038	PPI
MS.gene069038	MS.gene04336	PPI
MS.gene04336	MS.gene065463	PPI
MS.gene04336	MS.gene059371	PPI
MS.gene04336	MS.gene30325	PPI
MS.gene037902	MS.gene04336	PPI
MS.gene07810	MS.gene04336	PPI
MS.gene04336	MS.gene057442	PPI
MS.gene04336	MS.gene26468	PPI
MS.gene04336	MS.gene054186	PPI
MS.gene014498	MS.gene04336	PPI
MS.gene95644	MS.gene04336	PPI
MS.gene04336	MS.gene45902	PPI
MS.gene59369	MS.gene04336	PPI
MS.gene04336	MS.gene056257	PPI
MS.gene011390	MS.gene04336	PPI
MS.gene04336	MS.gene060923	PPI
MS.gene059422	MS.gene04336	PPI
MS.gene04336	MS.gene047206	PPI
MS.gene04336	MS.gene036487	PPI
MS.gene04336	MS.gene031378	PPI
MS.gene04336	MS.gene025293	PPI
MS.gene04336	MS.gene058018	PPI
MS.gene08205	MS.gene04336	PPI
MS.gene09845	MS.gene04336	PPI
MS.gene04336	MS.gene071987	PPI
MS.gene04336	MS.gene035331	PPI
MS.gene04336	MS.gene067809	PPI
MS.gene018553	MS.gene04336	PPI
MS.gene04336	MS.gene059880	PPI
MS.gene04336	MS.gene010453	PPI
MS.gene04336	MS.gene036432	PPI
MS.gene04336	MS.gene52150	PPI
MS.gene04336	MS.gene00612	PPI
MS.gene04336	MS.gene99779	PPI
MS.gene04336	MS.gene072064	PPI
MS.gene04336	MS.gene034607	PPI
MS.gene04336	MS.gene066300	PPI
MS.gene08876	MS.gene04336	PPI
MS.gene033349	MS.gene04336	PPI
MS.gene04336	MS.gene037324	PPI
MS.gene04336	MS.gene061905	PPI
MS.gene04336	MS.gene041623	PPI
MS.gene04336	MS.gene08628	PPI
MS.gene04336	MS.gene011230	PPI
MS.gene033348	MS.gene04336	PPI
MS.gene07704	MS.gene04336	PPI
MS.gene04336	MS.gene99744	PPI
MS.gene04336	MS.gene000480	PPI
MS.gene04336	MS.gene50164	PPI
MS.gene52608	MS.gene04336	PPI
MS.gene04336	MS.gene029415	PPI
MS.gene04336	MS.gene59319	PPI
MS.gene04336	MS.gene037122	PPI
MS.gene04336	MS.gene065462	PPI
MS.gene69778	MS.gene04336	PPI
MS.gene04336	MS.gene90360	PPI
MS.gene04336	MS.gene66119	PPI
MS.gene04336	MS.gene040601	PPI
MS.gene04336	MS.gene39294	PPI
MS.gene04336	MS.gene065146	PPI
MS.gene04336	MS.gene94588	PPI
MS.gene04336	MS.gene056605	PPI
MS.gene04336	MS.gene42324	PPI
MS.gene04336	MS.gene47347	PPI
MS.gene04336	MS.gene047859	PPI
MS.gene04336	MS.gene01172	PPI
MS.gene04336	MS.gene39195	PPI
MS.gene04336	MS.gene64670	PPI
MS.gene04336	MS.gene26467	PPI
MS.gene04336	MS.gene37379	PPI
MS.gene04336	MS.gene77392	PPI
MS.gene04336	MS.gene45646	PPI
MS.gene059370	MS.gene04336	PPI
MS.gene53720	MS.gene04336	PPI
MS.gene04336	MS.gene045818	PPI
MS.gene04336	MS.gene42882	PPI
MS.gene04336	MS.gene25010	PPI
MS.gene066348	MS.gene04336	PPI
MS.gene29488	MS.gene04336	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene04336.t1	MTR_3g460700	91.512	648	35	3	1	629	1	647	0.0	1071
MS.gene04336.t1	MTR_5g096020	36.441	236	115	8	272	496	316	527	2.79e-26	113
MS.gene04336.t1	MTR_3g086950	32.105	190	103	5	277	444	159	344	9.94e-20	94.4
MS.gene04336.t1	MTR_8g089980	30.415	217	119	6	277	465	166	378	5.18e-18	89.0
MS.gene04336.t1	MTR_3g104760	34.078	179	105	4	272	442	224	397	1.44e-16	83.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene04336.t1	AT4G26600	58.862	615	192	9	51	629	77	666	0.0	690
MS.gene04336.t1	AT4G26600	59.401	601	183	9	51	615	77	652	0.0	681
MS.gene04336.t1	AT4G26600	56.037	646	192	10	51	629	77	697	0.0	672
MS.gene04336.t1	AT4G26600	68.619	478	106	5	51	494	77	544	0.0	664
MS.gene04336.t1	AT5G55920	64.045	534	147	8	36	536	84	605	0.0	646
MS.gene04336.t1	AT4G26600	64.440	509	106	6	51	494	77	575	0.0	646
MS.gene04336.t1	AT4G26600	67.342	444	101	5	51	460	77	510	0.0	594
MS.gene04336.t1	AT4G26600	62.947	475	101	6	51	460	77	541	0.0	577
MS.gene04336.t1	AT4G26600	62.947	475	101	6	51	460	77	541	0.0	577
MS.gene04336.t1	AT3G13180	37.179	234	116	8	272	496	310	521	2.05e-26	114
MS.gene04336.t1	AT5G26180	32.549	255	126	10	272	501	284	517	5.16e-18	88.6
MS.gene04336.t1	AT5G26180	32.549	255	126	10	272	501	284	517	5.16e-18	88.6
MS.gene04336.t1	AT5G26180	32.549	255	126	10	272	501	284	517	5.16e-18	88.6
MS.gene04336.t1	AT5G26180	32.549	255	126	10	272	501	284	517	5.16e-18	88.6
MS.gene04336.t1	AT5G26180	32.549	255	126	10	272	501	284	517	5.16e-18	88.6
MS.gene04336.t1	AT4G17590	37.500	144	49	3	261	402	37	141	2.86e-17	80.9
MS.gene04336.t1	AT2G22400	29.016	193	108	4	277	444	170	358	2.30e-16	83.6
MS.gene04336.t1	AT4G40000	28.017	232	119	6	271	465	157	377	1.05e-15	81.6
MS.gene04336.t1	AT4G17590	41.606	137	68	5	281	413	22	150	2.51e-15	75.5

Find 140 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTCTTCCTCTTCTTGGATTC+AGG	0.141190	3.4:+56377313	None:intergenic
TTTACATCATTACTTGGTTT+TGG	0.152423	3.4:+56377193	None:intergenic
TTCGGTTGATAGGGTATTAT+TGG	0.174197	3.4:-56379077	MS.gene04336:CDS
TTTATCTTTCTTCCTCTTCT+TGG	0.176574	3.4:+56377306	None:intergenic
TTTATCTTTCTTCCTCTTCT+TGG	0.179650	3.4:+56377222	None:intergenic
TCTGAGGACAAACACTTTAA+AGG	0.206092	3.4:-56381915	MS.gene04336:intron
TCTGATGTTGCAGCAGGTTT+TGG	0.227277	3.4:+56377430	None:intergenic
TTGTCTCAATGCCTTAAAAT+TGG	0.229426	3.4:+56382221	None:intergenic
AGTAATGGTGTTAAAGAAAA+TGG	0.257699	3.4:-56377352	MS.gene04336:CDS
CTGTCAGGTTTACAAAGTTT+AGG	0.265280	3.4:-56378123	MS.gene04336:intron
AAAGGTTCTGATTTGGAATC+TGG	0.269000	3.4:-56383447	MS.gene04336:CDS
TGTCAGGTTTACAAAGTTTA+GGG	0.281826	3.4:-56378122	MS.gene04336:intron
GTAGATTCTTATTCTAAATC+TGG	0.304253	3.4:-56378427	MS.gene04336:CDS
TTCTTCCTCTTCTTGGAGTC+AGG	0.315995	3.4:+56377229	None:intergenic
TTCTCCCTCTTCTTGGGTTT+AGG	0.327583	3.4:+56377145	None:intergenic
GATGCCCCTTGCAGTGGAAC+TGG	0.328800	3.4:-56379055	MS.gene04336:CDS
GACGGAAGACTCCATCAATA+TGG	0.331957	3.4:-56376841	MS.gene04336:CDS
CTGTGGTGCTTCTTCTTCTT+CGG	0.343034	3.4:+56383655	None:intergenic
TTTGAAATCTCTTCTCTAGA+TGG	0.349742	3.4:+56377112	None:intergenic
AAAGGAGAGGATTGTTGATA+TGG	0.355005	3.4:-56381405	MS.gene04336:CDS
CTCTGTAGATTGGAAAGATC+TGG	0.356806	3.4:+56382373	None:intergenic
TGAGGTTTGACTGGCTTTGA+AGG	0.357083	3.4:+56383734	None:intergenic
TGTAGAGAAAGGTTCTGATT+TGG	0.366163	3.4:-56383454	MS.gene04336:intron
GTGTTTGTCCTCAGACATAT+AGG	0.370494	3.4:+56381923	None:intergenic
TTTAATCCTCCTCTGTAGAT+TGG	0.371683	3.4:+56382363	None:intergenic
CGTCGTCGTCTTCGCTTCCT+TGG	0.374595	3.4:+56383555	None:intergenic
TTCTTAGTTGCTGGCGCCAT+TGG	0.375256	3.4:+56383761	None:intergenic
TGGGTTTCAATTCGGTTGAT+AGG	0.382919	3.4:-56379087	MS.gene04336:CDS
GAAGTGGAATCGTCTTTGAT+TGG	0.383376	3.4:+56383683	None:intergenic
GATAAACAGAGGAGTAAATC+TGG	0.389989	3.4:-56381766	MS.gene04336:CDS
TCAGACACGAAGACGAGATT+TGG	0.391397	3.4:-56381799	MS.gene04336:intron
CCTCAGTACTCCCATATTGA+TGG	0.397322	3.4:+56376830	None:intergenic
GTTCCTTGTGGACTTGACTT+TGG	0.402894	3.4:-56378227	MS.gene04336:CDS
TTTGGAATCTGGGTCGGGTT+CGG	0.402954	3.4:-56383436	MS.gene04336:CDS
GAATTGAAACCCAAAACCTT+TGG	0.426716	3.4:+56379097	None:intergenic
CGTCTTGTCTTATCTAATGA+AGG	0.426921	3.4:+56378085	None:intergenic
ACTGATATACGATCATACTA+TGG	0.431643	3.4:-56382159	MS.gene04336:CDS
TACCTCCTTCCCATCATAGT+TGG	0.435058	3.4:+56379717	None:intergenic
ATCTGGGTCGGGTTCGGATG+AGG	0.438268	3.4:-56383430	MS.gene04336:CDS
AGCAAATGTCAAAGAAGCTT+CGG	0.443318	3.4:-56377254	MS.gene04336:CDS
GTTTCTAATCGGTGCTTTAG+TGG	0.444849	3.4:-56382127	MS.gene04336:CDS
TTCTGATTTGGAATCTGGGT+CGG	0.449495	3.4:-56383442	MS.gene04336:CDS
GAGAAGAGATTTCAAAAGCC+AGG	0.450455	3.4:-56377105	MS.gene04336:intron
GATTCTGACTTATCTTCTGA+TGG	0.450798	3.4:-56383605	MS.gene04336:CDS
AACCCAAGAAGAGGGAGAAA+AGG	0.456344	3.4:-56377141	MS.gene04336:CDS
GGACTTGACTTTGGACGTCC+AGG	0.457743	3.4:-56378218	MS.gene04336:CDS
TACTCTGGAGTGGCACCAAT+TGG	0.459895	3.4:+56381587	None:intergenic
TAGGTCATGCCACCGACTCC+AGG	0.460196	3.4:+56376784	None:intergenic
GGCTACAATGAGTTTCTAAT+CGG	0.460424	3.4:-56382138	MS.gene04336:CDS
TTTAAGGCATTGAGACAAGA+TGG	0.462197	3.4:-56382216	MS.gene04336:CDS
TTATTGATTATGTGCTCAAA+AGG	0.465368	3.4:-56378265	MS.gene04336:CDS
GGGTTTCAATTCGGTTGATA+GGG	0.465722	3.4:-56379086	MS.gene04336:CDS
AATATCTTCCTCACCCGATT+CGG	0.468090	3.4:+56383398	None:intergenic
ATATTCTACATGCTCAATCA+TGG	0.469509	3.4:-56378392	MS.gene04336:CDS
ATCTGGATCCTCTCAGCAAA+TGG	0.472293	3.4:-56381749	MS.gene04336:CDS
GTGTGTTGCAGGGCTGCACC+TGG	0.473485	3.4:-56380637	MS.gene04336:intron
ATCGTCGTCCACCACAAGCT+CGG	0.474951	3.4:+56377381	None:intergenic
AATGTTTCTGATGTTGCAGC+AGG	0.475408	3.4:+56377424	None:intergenic
GGCCTTGGCTCCTCAAGAAA+AGG	0.475814	3.4:-56381423	MS.gene04336:CDS
ACTGTAGTCTCCAACTATGA+TGG	0.476886	3.4:-56379727	MS.gene04336:CDS
ATGCCCCTTGCAGTGGAACT+GGG	0.480681	3.4:-56379054	MS.gene04336:CDS
GTTTCCAGTCGTTGAACTGA+TGG	0.482713	3.4:-56381975	MS.gene04336:CDS
AACATCAGAAACATTTGAAA+AGG	0.487097	3.4:-56377416	MS.gene04336:CDS
TAGATTCTTATTCTAAATCT+GGG	0.488118	3.4:-56378426	MS.gene04336:CDS
CAATTATAGTGCAGAATTGA+CGG	0.491252	3.4:-56376859	MS.gene04336:intron
TGAGGATGATGATGCCGAAT+CGG	0.500290	3.4:-56383412	MS.gene04336:CDS
CAAAAGGAGGGATGTAAAGC+TGG	0.505302	3.4:-56378249	MS.gene04336:CDS
GAGGATGATGATGCCGAATC+GGG	0.513069	3.4:-56383411	MS.gene04336:CDS
TGGTGCCACTCCAGAGTACA+TGG	0.514375	3.4:-56381582	MS.gene04336:CDS
TCTGTAGATTGGAAAGATCT+GGG	0.515115	3.4:+56382374	None:intergenic
TCTGATTTGGAATCTGGGTC+GGG	0.515153	3.4:-56383441	MS.gene04336:CDS
ACGGAAGACTCCATCAATAT+GGG	0.523253	3.4:-56376840	MS.gene04336:CDS
TTACCCCAGTTCCACTGCAA+GGG	0.525320	3.4:+56379050	None:intergenic
TTCTTCTTCGGATTCAGAAG+TGG	0.526045	3.4:+56383667	None:intergenic
TGTTTGTCCTCAGACATATA+GGG	0.528752	3.4:+56381924	None:intergenic
CTGAACCTAAACCCAAGAAG+AGG	0.529858	3.4:-56377150	MS.gene04336:CDS
TTAAGGCATTGAGACAAGAT+GGG	0.536152	3.4:-56382215	MS.gene04336:CDS
GCCACTCCAGAGTACATGGC+TGG	0.537318	3.4:-56381578	MS.gene04336:CDS
TGAGGAGCCAAGGCCATCAC+AGG	0.543882	3.4:+56381431	None:intergenic
CTGTAGTCTCCAACTATGAT+GGG	0.544758	3.4:-56379726	MS.gene04336:CDS
CTGAACCTGAATCCAAGAAG+AGG	0.544878	3.4:-56377318	MS.gene04336:CDS
GTCCTCAGACATATAGGGCG+AGG	0.545103	3.4:+56381929	None:intergenic
AAGGTTCTGATTTGGAATCT+GGG	0.547337	3.4:-56383446	MS.gene04336:CDS
GTGTCTGCAGGTTATATCCA+AGG	0.551439	3.4:-56378956	MS.gene04336:intron
CCATGTCAATTGCAGCAAGA+AGG	0.552054	3.4:+56378449	None:intergenic
CTTACCCCAGTTCCACTGCA+AGG	0.552805	3.4:+56379049	None:intergenic
CGGGTGAGGAAGATATTGCT+AGG	0.555784	3.4:-56383392	MS.gene04336:CDS
CACACGTACACAACATGGAC+GGG	0.556907	3.4:-56378054	MS.gene04336:CDS
GACTGCGAATCTGCATAGGA+TGG	0.558093	3.4:-56379761	MS.gene04336:CDS
TATGATTCTCAAGTACCAAT+TGG	0.561582	3.4:-56381602	MS.gene04336:CDS
TGATGATGCCGAATCGGGTG+AGG	0.564184	3.4:-56383406	MS.gene04336:CDS
TTGATTATGTGCTCAAAAGG+AGG	0.564759	3.4:-56378262	MS.gene04336:CDS
ACAAGATGGGGCGACGAGGA+AGG	0.566211	3.4:-56382202	MS.gene04336:CDS
CCTTCTTGCTGCAATTGACA+TGG	0.567622	3.4:-56378449	MS.gene04336:CDS
ATCTTTCCAATCTACAGAGG+AGG	0.568522	3.4:-56382369	MS.gene04336:CDS
TTATTGGATGCCCCTTGCAG+TGG	0.570741	3.4:-56379061	MS.gene04336:CDS
GAAATCTCTTCTCTAGATGG+AGG	0.572729	3.4:+56377115	None:intergenic
TGATTATGTGCTCAAAAGGA+GGG	0.573793	3.4:-56378261	MS.gene04336:CDS
GACTTGACTTTGGACGTCCA+GGG	0.574163	3.4:-56378217	MS.gene04336:intron
AGTTCCATCAGTTCAACGAC+TGG	0.580628	3.4:+56381971	None:intergenic
CTCTGACTGCGAATCTGCAT+AGG	0.587603	3.4:-56379765	MS.gene04336:CDS
TACCCCAGTTCCACTGCAAG+GGG	0.588973	3.4:+56379051	None:intergenic
TCTAATCGGTGCTTTAGTGG+AGG	0.590337	3.4:-56382124	MS.gene04336:intron
CCACACGTACACAACATGGA+CGG	0.590377	3.4:-56378055	MS.gene04336:CDS
ATGCTCAATCATGGTTGCTG+AGG	0.593228	3.4:-56378383	MS.gene04336:intron
AGATTCTTATTCTAAATCTG+GGG	0.596204	3.4:-56378425	MS.gene04336:CDS
GTCTTGTCTTATCTAATGAA+GGG	0.597739	3.4:+56378086	None:intergenic
CGGAACCTGACTCCAAGAAG+AGG	0.600613	3.4:-56377234	MS.gene04336:CDS
TGAACCTAAACCCAAGAAGA+GGG	0.605852	3.4:-56377149	MS.gene04336:CDS
AGTCTCCAACTATGATGGGA+AGG	0.613258	3.4:-56379722	MS.gene04336:CDS
CCTTAAAATTGGAAAGAACA+CGG	0.614100	3.4:+56382232	None:intergenic
CTATCCACACGTACACAACA+TGG	0.617086	3.4:-56378059	MS.gene04336:CDS
AGGTCATGCCACCGACTCCA+GGG	0.618747	3.4:+56376785	None:intergenic
GATTCTTATTCTAAATCTGG+GGG	0.619452	3.4:-56378424	MS.gene04336:CDS
GAAAGAATGTACCCTGGAGT+CGG	0.620946	3.4:-56376796	MS.gene04336:CDS
AGAATGTACCCTGGAGTCGG+TGG	0.621553	3.4:-56376793	MS.gene04336:CDS
GAAATGTGCTCATCTACAGA+AGG	0.622193	3.4:-56378893	MS.gene04336:intron
GCTGCTCTAATGAAGAACTC+AGG	0.623997	3.4:-56380595	MS.gene04336:intron
AAAAGAAACCGAGCTTGTGG+TGG	0.626206	3.4:-56377389	MS.gene04336:CDS
CGTCCAAAGTCAAGTCCACA+AGG	0.626833	3.4:+56378224	None:intergenic
TAAGGCATTGAGACAAGATG+GGG	0.628379	3.4:-56382214	MS.gene04336:CDS
CCGTCCATGTTGTGTACGTG+TGG	0.631808	3.4:+56378055	None:intergenic
ACTGCGAATCTGCATAGGAT+GGG	0.632620	3.4:-56379760	MS.gene04336:CDS
CTACAACATCTCGAACTCGA+TGG	0.633995	3.4:-56383632	MS.gene04336:CDS
GACGACGATAAACCTAGTAA+TGG	0.637067	3.4:-56377367	MS.gene04336:CDS
GCAGATGTCTTGATAAACAG+AGG	0.637521	3.4:-56381777	MS.gene04336:CDS
TGGCTCCTCAAGAAAAGGAG+AGG	0.638199	3.4:-56381418	MS.gene04336:CDS
CTCCAACTATGATGGGAAGG+AGG	0.639968	3.4:-56379719	MS.gene04336:intron
TGTTGCAGGGCTGCACCTGG+TGG	0.642429	3.4:-56380634	MS.gene04336:intron
AGCCTCGCCCTATATGTCTG+AGG	0.651744	3.4:-56381931	MS.gene04336:CDS
CTGTAGATTGGAAAGATCTG+GGG	0.652650	3.4:+56382375	None:intergenic
GATGTAAAGCTGGTTCCTTG+TGG	0.654189	3.4:-56378239	MS.gene04336:CDS
ACCAGCCATGTACTCTGGAG+TGG	0.663459	3.4:+56381577	None:intergenic
AGTTCGAGATGTTGTAGCTG+TGG	0.664327	3.4:+56383638	None:intergenic
TGAGACAAGATGGGGCGACG+AGG	0.665072	3.4:-56382206	MS.gene04336:CDS
TGCCCCTTGCAGTGGAACTG+GGG	0.672170	3.4:-56379053	MS.gene04336:intron
GGAAGCGAAGACGACGACGA+AGG	0.673724	3.4:-56383551	MS.gene04336:intron
CAGATCTTTCCAATCTACAG+AGG	0.673805	3.4:-56382372	MS.gene04336:CDS
CATGTCGAAAGAATGTACCC+TGG	0.682275	3.4:-56376802	MS.gene04336:CDS
CCATCAATATGGGAGTACTG+AGG	0.727366	3.4:-56376830	MS.gene04336:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	56376788	56383780	56376788	ID=MS.gene04336
chr3.4	mRNA	56376788	56383780	56376788	ID=MS.gene04336.t1;Parent=MS.gene04336
chr3.4	exon	56383552	56383780	56383552	ID=MS.gene04336.t1.exon1;Parent=MS.gene04336.t1
chr3.4	CDS	56383552	56383780	56383552	ID=cds.MS.gene04336.t1;Parent=MS.gene04336.t1
chr3.4	exon	56383291	56383471	56383291	ID=MS.gene04336.t1.exon2;Parent=MS.gene04336.t1
chr3.4	CDS	56383291	56383471	56383291	ID=cds.MS.gene04336.t1;Parent=MS.gene04336.t1
chr3.4	exon	56382359	56382408	56382359	ID=MS.gene04336.t1.exon3;Parent=MS.gene04336.t1
chr3.4	CDS	56382359	56382408	56382359	ID=cds.MS.gene04336.t1;Parent=MS.gene04336.t1
chr3.4	exon	56382125	56382258	56382125	ID=MS.gene04336.t1.exon4;Parent=MS.gene04336.t1
chr3.4	CDS	56382125	56382258	56382125	ID=cds.MS.gene04336.t1;Parent=MS.gene04336.t1
chr3.4	exon	56381916	56381999	56381916	ID=MS.gene04336.t1.exon5;Parent=MS.gene04336.t1
chr3.4	CDS	56381916	56381999	56381916	ID=cds.MS.gene04336.t1;Parent=MS.gene04336.t1
chr3.4	exon	56381743	56381817	56381743	ID=MS.gene04336.t1.exon6;Parent=MS.gene04336.t1
chr3.4	CDS	56381743	56381817	56381743	ID=cds.MS.gene04336.t1;Parent=MS.gene04336.t1
chr3.4	exon	56381568	56381639	56381568	ID=MS.gene04336.t1.exon7;Parent=MS.gene04336.t1
chr3.4	CDS	56381568	56381639	56381568	ID=cds.MS.gene04336.t1;Parent=MS.gene04336.t1
chr3.4	exon	56381404	56381477	56381404	ID=MS.gene04336.t1.exon8;Parent=MS.gene04336.t1
chr3.4	CDS	56381404	56381477	56381404	ID=cds.MS.gene04336.t1;Parent=MS.gene04336.t1
chr3.4	exon	56380596	56380648	56380596	ID=MS.gene04336.t1.exon9;Parent=MS.gene04336.t1
chr3.4	CDS	56380596	56380648	56380596	ID=cds.MS.gene04336.t1;Parent=MS.gene04336.t1
chr3.4	exon	56379720	56379829	56379720	ID=MS.gene04336.t1.exon10;Parent=MS.gene04336.t1
chr3.4	CDS	56379720	56379829	56379720	ID=cds.MS.gene04336.t1;Parent=MS.gene04336.t1
chr3.4	exon	56379054	56379122	56379054	ID=MS.gene04336.t1.exon11;Parent=MS.gene04336.t1
chr3.4	CDS	56379054	56379122	56379054	ID=cds.MS.gene04336.t1;Parent=MS.gene04336.t1
chr3.4	exon	56378894	56378968	56378894	ID=MS.gene04336.t1.exon12;Parent=MS.gene04336.t1
chr3.4	CDS	56378894	56378968	56378894	ID=cds.MS.gene04336.t1;Parent=MS.gene04336.t1
chr3.4	exon	56378384	56378476	56378384	ID=MS.gene04336.t1.exon13;Parent=MS.gene04336.t1
chr3.4	CDS	56378384	56378476	56378384	ID=cds.MS.gene04336.t1;Parent=MS.gene04336.t1
chr3.4	exon	56378218	56378297	56378218	ID=MS.gene04336.t1.exon14;Parent=MS.gene04336.t1
chr3.4	CDS	56378218	56378297	56378218	ID=cds.MS.gene04336.t1;Parent=MS.gene04336.t1
chr3.4	exon	56378039	56378138	56378039	ID=MS.gene04336.t1.exon15;Parent=MS.gene04336.t1
chr3.4	CDS	56378039	56378138	56378039	ID=cds.MS.gene04336.t1;Parent=MS.gene04336.t1
chr3.4	exon	56377106	56377470	56377106	ID=MS.gene04336.t1.exon16;Parent=MS.gene04336.t1
chr3.4	CDS	56377106	56377470	56377106	ID=cds.MS.gene04336.t1;Parent=MS.gene04336.t1
chr3.4	exon	56376951	56376994	56376951	ID=MS.gene04336.t1.exon17;Parent=MS.gene04336.t1
chr3.4	CDS	56376951	56376994	56376951	ID=cds.MS.gene04336.t1;Parent=MS.gene04336.t1
chr3.4	exon	56376788	56376867	56376788	ID=MS.gene04336.t1.exon18;Parent=MS.gene04336.t1
chr3.4	CDS	56376788	56376867	56376788	ID=cds.MS.gene04336.t1;Parent=MS.gene04336.t1

Gene Sequence

>MS.gene04336

ATGGCGCCAGCAACTAAGAAAAAACCTTCAAAGCCAGTCAAACCTCAAAAAGCCCCCAAAAAAGTTCAAATTGTTCCAATCAAAGACGATTCCACTTCTGAATCCGAAGAAGAAGAAGCACCACAGCTACAACATCTCGAACTCGATGGTTCTGATTCTGACTTATCTTCTGATGGTGATGATCAATTAGCTGATGATTTTCTCCAAGGAAGCGAAGACGACGACGAAGGTGTGTATTTTTTGTTCTATATGCTCTTGCAGATATTCCATTTTGATATTGAAATTGATTGTTGTGTTTATGTTTTGTAGAGAAAGGTTCTGATTTGGAATCTGGGTCGGGTTCGGATGAGGATGATGATGCCGAATCGGGTGAGGAAGATATTGCTAGGAAGTCTAAACTTATTGATAAAAAAAGGGAGAGAGATAGCAAGGCAGCTGCAGATGATTTGCAGACTAACATTCAGACTAATATTCAAGATGAGTCTGATGAGTTTACATTACCAACTAAACAGGTTTCTTTTTTATTTTAGTTTTTTGATTTTGAATTTATGTTATGACTGTTATTGTGTTATGGGTTTTACTTAAATTTTAGTTATGGGTTTTACTTAAATTATTAGAAAGTTAGTTAATTTAATTATTAGTTTATAGTGAAAATTTGAATCAAATACAAAAGCCAATTTTTTTTTTCTTTTTCTGAGGGCATGTTTGTCTTGACTTATTTGAGCTTATATATTGTCATAAGTTTTGTGAAGAACTTAAGAAAACAGGTTATGGCATTGTATATAAGCTGTTTTCAACTTATTTTTAGGGCCGTTTGGATAATAAGCTTTTATTATTTTCATAAGCTATTCAAGGTAATTTATGAAAAAAAGCTTATGAAATACAATTTTGGTTAGTGAGAATTTATGAATTAACATAAAAGCTTGTTTATTTGCATAGGCTATTTTTCATAAGCAAAACAATAAGTCAATCCAAACTGACCCTGATAAGTTCTCCAAAATAGCTTATGAAAACAGCTTATAGCTCATAGAAAACAATCTAATTTTATTATCTTTTATTATAGAAATAAATGTGGTTATCATGATAAGCGCTTTGGCTATAAGATGCAAATAAGCTGTTTATATCAACATGGCCCGAGTCGAAGTCAATTCTGATTCAAGTTTATCAAACAAGCTAAAATTTGATACAAAAAAAATCAAACAAGCTAAAACAACTTTATATTGAAGAACATCAGTTTGTGACATTGTTCTCTGTATACTTGAACATTGCTAATCTTAACAAGTGTAAAATCTACTGAACTTGGATTTTTACATTTAATGTTGTAATGTGTGGTAAAAATGGTCATCTTTTAACTGTTAGGAACTTGAGGAAGAGGCTTTGCGTCCCCAGATCTTTCCAATCTACAGAGGAGGATTAAAGACAGTAAGTTTAACTTTCTCTGTCAATTGACTGTGACTGTTGTTAACAGTTTTCGAGTTGTTTTTTGAGTTGTTGAAATTGTTAATTGTTTTGTTTTTTCCAGTTGTCCGTGTTCTTTCCAATTTTAAGGCATTGAGACAAGATGGGGCGACGAGGAAGGATTATGTTGATCAGCTTAAGACTGATATACGATCATACTATGGCTACAATGAGTTTCTAATCGGTGCTTTAGTGGAGGTGTGGATAATTATGATATTGCGACCTATGCTTTGAACTTTAATTTCATTGATCACTCCATCCTGTTTTTACCATATACATCTAGTTTCTGCTTTGCATTAAAGTAATATTTTGTTTTGTCGCAGATGTTTCCAGTCGTTGAACTGATGGAACTGATTGAAGCCTTTGAAAAGCCTCGCCCTATATGTCTGAGGACAAACACTTTAAAGGTTGCACGTCTATTTCTGTCACTTTGGGTCGATTTTTTAATGTAAACTTATCCATGTTCCCAATTGAGCTTATATATTTGTCTTCTGAACATAATCAGACACGAAGACGAGATTTGGCAGATGTCTTGATAAACAGAGGAGTAAATCTGGATCCTCTCAGCAAATGGTCAAAAGTAGGTTTTTATATGTCTCTGCTGGCTTTCCTTTGTCTTTTTTATGTTATATGAATCCAAGTACCAGTTTCTAATACCAGATAAATTTGTATCTATGTAAAAGGTTGGACTTGTTGTGTATGATTCTCAAGTACCAATTGGTGCCACTCCAGAGTACATGGCTGGTTTTTACATGGTAGGTGTTTTTCTGCTGTCGTAGTTCTTTATTGTATTTCATTTAATATTACACATTACACTTAATACTGTTTTTGTTTTTAACTTGCAGCTTCAAAGTGCTAGTTCTTTTCTGCCTGTGATGGCCTTGGCTCCTCAAGAAAAGGAGAGGATTGTTGATATGGCGTAAGTGATAATTCTTTGCTTGCTATAAATCCAAGCTGTGTCCAAATGTTAGAGAACCTATATCAGTTTTCTATGTGATTTGAACCAGTCATAAAAATTTTCCATGGTGTTCTGAGGCTATTGGTGTTCAGTGTGCCCATGACAATATACTGTTTCATACTAGAATTATACTCGTGCAAGTATGCAACTGTTTTTTATGCATGTTTTCTGACAAATTAAACAAGAAAAAGGCTTAACTTAAACGTCTTTAGGATAAGTATACCTTGGTAAATCATCTCTTGAACAACCACCTCTTTCACTTTGTTACAATACAATTTTTGACATTTTACCGATGTCCATGGAAATTGACTCAAGCTTCACTTGTCTTGCTTGTTGCGTGTATTCAAGCATGCCGTTGTGCAGTATCCTTTTTAGATGGATGGCCTGCTGCAAGTACGAAATGTTGTGCGCTGTTGGTGGCTGCAATATTTACCTTTTGAAAAAAGCTAAAAAGAAATAATAATAATTGGTGGCAGCTATTTGATTCAAAATTCTAAATTAGTACCACAACCTATTACTTATTAGGCTGCCCTTATAACCAGTTCTGCTCTTGTCCAATGAGAACGCTTTCTGTTCATGAGTTCATGAGTTTTGTCAAAATACACATGGAGATTTGGAAGATGTAATTTTTGAATACAAGCTCTTCTTGAACATGGTTTTGTTCTTGCAAATATATATCTTTTATCATGGTCAAGACATTTTTATGTGTGTTGCAGGGCTGCACCTGGTGGTAAAACAACTTACATTGCTGCTCTAATGAAGAACTCAGGTATATATATTATTTTCTCAGTTTCTTGTGCATTACATGATGCATATTAATTTTTCGCACATAACAGATTATAAAGCCATAGCAGTGTAGCACTGCTTCATATTTATTTCGCCATTATTGTGGAAGGATACTATATTATTGCTCTAATGTTTGCTTGAACTACAATTTACAAAAAAAATTCATAAATTTTCGCTATTATCAAGTGTACTTGGAGAGAATGTTGCGTTCTGTATGCAGTGCAGTTGAAATGTGTTCCGTAAAAAAATGATCTTATAATCAAGCCCTTTTGCAAAAGTGCAGCTTCTTTTTTGTTTTTGTTCTTCATTTTAAACAATATTTGTGCTTCCTTTTGTTTTCAAAATTGAATTACTTAAATTATACGTAATTATTTGCATCAAGAGAAGCCAGACATTATAGTTCATTTTGGGTTGTAGTTCTATTACAAGTCTCAGTTTGAACTTTCAACTAGTAGAGGTGCTTTCTCTGCATAGTTGTAGGTCGTGTTGTGCTATAGCTCTACTCATTAGTGCATAAGTACGCTTTCAGCATCACCTTGGGTCATTCTTATCAAGTTGTGATGCTATAAAACAAAAAAAAAATTTAAATCCTTGAACTTTGCATATTCCTCCATAAGGTATTATTACTAGCTTGTGTGATCTAAGAATTTGAGTTCTAACAAATTGACTATCATTTGTGTGATCTAAGAATTACTAGTTTGTTAGTAGTTTTATGATTTGAGTAATCAGTTGTTATTTTTTTATCGCAGGAATAATTTTTGCAAATGAAATGAAGGTGCCACGACTAAAATCTCTGACTGCGAATCTGCATAGGATGGGTGTATCGAACACTGTAGTCTCCAACTATGATGGGAAGGAGGTAAGCATCTTTTTTCCACATTAATCTCTGACTTCACTGCTGTTAGATTATATTTCCACACTGTTTGGTTTTCTATTTGACCATCCATCTAGCTCTCTGTCGTACTTATAATTGTTCAGTTTGCAAATTATTTTATGCTTTGTTTACACATTTTTGCTGGACAGAAAACCGAGTCTTCTTTTAATAAGCGAATCATTGACATTATAATCTACTTTATGTACTGGGAGATTTATTTGTTACAAGAACTGTAAGATGCCGGGGGCTGCATTTAGATGATAAGCCCTTGTGTTATTATATTAAAAATGGTCCTTTTTGTCATTATACAAAATGGTTGTGATCACAGCAGGTTTGCGAACCTGTACTTGTATATACTTAACACTGGAAAATTACTCCCTTCTGGTCACATTAGTTTCTTAACGAATGTCCATTTTGTAATTATTATCATATTCTATTGTGGTTTTTTCCTGGTATAGATATACGTGAGCATATTAATTCTGCACCAATGATTCAAGTAGCTCCCATTTTCAGTCGTATAATGATCTTCCATGTGCCCACAACACCTAGCTTATTGTTTACATTTATGCTTTTATTTTTCAGCTTCCAAAGGTTTTGGGTTTCAATTCGGTTGATAGGGTATTATTGGATGCCCCTTGCAGTGGAACTGGGGTAAGAAATTGTGAATAAAATCAAGATTTTTAGTATTTCTTGTCTATGTTTATGTTCAAGGCACTTAAACCGTTTGTGTCTGCAGGTTATATCCAAGGATGAGTCAGTCAAAACTTCAAAGAACTTTGAAGATATAAAGAAATGTGCTCATCTACAGAAGGTAAAATCAAGGTTTTGTTTGGGACTATGACTATGAGAGGAATAACATATGTATCTTATTTATACGCATTGAGGGTATTCATTTAGCTTTTCATCCTAGTGTAACAGTTCCTTGAACTCAATTAATTTCTTTAAAATTGTTTTTTCTTGACCGATATGCAAAAAAAAAATCGGAGCATATTTTGTTGCTTCTTCTGATTTTATGTCCCTCTACCAGCGCACAAGTAATCTGCATTTGAAGGACTAGATTGCTGTTTTCATTTTCAACTTGTGATTTTATGTCCCTTGAATACCTTATTATATTTTTGAGATTCAATCAGGATCAACTGGCCGTAGTGAGAATATAAAATTAGTTGCATACTTTTTGCGCTCTTGTCCTTCTTTGCTAATATTCAATAATTTCCTTTTTCTTTTGTAGGAGCTCCTTCTTGCTGCAATTGACATGGTAGATTCTTATTCTAAATCTGGGGGATACGTTGTATATTCTACATGCTCAATCATGGTTGCTGAGGTTCGTTTTTAGTTGCAACTTGCATTTATGTTTGCTTTTTCATGTCTTATGTTTCTAATTTTTTTTCTCTCTTAATTATTATTCAGAATGAAGCAGTTATTGATTATGTGCTCAAAAGGAGGGATGTAAAGCTGGTTCCTTGTGGACTTGACTTTGGACGTCCAGGGTACTGATTGTTTTTCCCCTTACAGCATTGTTTTGTTTTTTAGGAATTGTCTTGCATTGTGACATTTGTTCTCTGTCAGGTTTACAAAGTTTAGGGAACAGCGTTTTCACCCTTCATTAGATAAGACAAGACGTTTCTATCCACACGTACACAACATGGACGGGTTTTTTGTTGCAAAGGTATTATATATGCTCAGTTTTAGTAGCTTTGCGTTTTTTGTTTGCATTCACTTTGAAATTTGAATGTATTATCACTCTTCAGATTGATTCCCCATAAAATTTTCTCTTGCAAAAGTTTGTTTTAAATTTATCCAGTAATTATTTTGGATACTAGTAAAACCCACCAACAAATTTCTAAATTGTTGAAATTATTTGTACAAGATGGTGGACCATCGAGGGCTATGCTGCTAGTTTCTTGGCTGTTTTTGACATGTATAGGATGTTATTGATATAGGATGTTTTGTATAGTCCCGTGGCTACTGGTTTAGTTTGATAAAGGATATTTTGAAAAGTAGAAATGATAAAATAATTATCTTATTGATTTAACATTCTCAAAATATCTGAGAGGTTTTTGTTGTTCTTCATACTTGTACGTGTTCGAGTTAGTCCGTTTCAAAATATCCCCGTTGTTCAGCGCTTGATATTTTCATTGTGTAGTGGTGATTTTAAAGACACCGATTGCAGAAGGTGATATTGACTTATGTGTGAAAATACTTTCAGTTTTTATATTTGATTTGATATCTTTCAGTTGAAAAAAATGAGCCACCCAAAACCTGCTGCAACATCAGAAACATTTGAAAAGGATGAAAAAGAAACCGAGCTTGTGGTGGACGACGATAAACCTAGTAATGGTGTTAAAGAAAATGGCAAACATTCTTCTGAACCTGAATCCAAGAAGAGGAAGAAAGATAAATTCCCCTCAAAACCAAGTAATGATATAAAAGCAAATGTCAAAGAAGCTTCGGAACCTGACTCCAAGAAGAGGAAGAAAGATAAATTCCCCCCAAAACCAAGTAATGATGTAAAAGCTAATGTCACAGAAGCGTCTGAACCTAAACCCAAGAAGAGGGAGAAAAGGAAACCTCCATCTAGAGAAGAGATTTCAAAAGCCAGGTTAAATGTTTTATTCATATTTGAAAAGAATTTCTTTATATTCAATAAATTTCCAGCAGTTTATGAATATAATTATCCCTTAAAAATCTAAGGATTTTGCGATTCCTGCAGAGAGGAGAAGAGACTTGCTTTAATAGAAAAGAAGAGAAAAAGTGGTAAGCAACAGAGAAAAGAAAATGATGAATGACCATTGGCAATACAAGAAGTATTGATGACCAACTGTGCAATTATAGTGCAGAATTGACGGAAGACTCCATCAATATGGGAGTACTGAGGTGTTGCATGTCGAAAGAATGTACCCTGGAGTCGGTGGCATGA

Protein sequence

>MS.gene04336.t1

MAPATKKKPSKPVKPQKAPKKVQIVPIKDDSTSESEEEEAPQLQHLELDGSDSDLSSDGDDQLADDFLQGSEDDDEEKGSDLESGSGSDEDDDAESGEEDIARKSKLIDKKRERDSKAAADDLQTNIQTNIQDESDEGFASPDLSNLQRRIKDIVRVLSNFKALRQDGATRKDYVDQLKTDIRSYYGYNEFLIGALVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERIVDMAAAPGGKTTYIAALMKNSGIIFANEMKVPRLKSLTANLHRMGVSNTVVSNYDGKELPKVLGFNSVDRVLLDAPCSGTGVISKDESVKTSKNFEDIKKCAHLQKELLLAAIDMVDSYSKSGGYVVYSTCSIMVAENEAVIDYVLKRRDVKLVPCGLDFGRPGFTKFREQRFHPSLDKTRRFYPHVHNMDGFFVAKLKKMSHPKPAATSETFEKDEKETELVVDDDKPSNGVKENGKHSSEPESKKRKKDKFPSKPSNDIKANVKEASEPDSKKRKKDKFPPKPSNDVKANVTEASEPKPKKREKRKPPSREEISKAREEKRLALIEKKRKSELTEDSINMGVLRCCMSKECTLESVA