AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene009479

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009479.t1 MTR_3g009760 92.200 500 31 1 1 492 27 526 0.0 935
MS.gene009479.t1 MTR_3g009820 92.200 500 31 1 1 492 27 526 0.0 934
MS.gene009479.t1 MTR_3g009880 86.774 499 56 2 1 491 27 523 0.0 871
MS.gene009479.t1 MTR_4g094488 55.248 505 204 7 1 486 34 535 0.0 548
MS.gene009479.t1 MTR_2g031390 54.202 476 201 6 28 488 56 529 0.0 546
MS.gene009479.t1 MTR_2g031420 57.026 491 193 7 12 489 43 528 0.0 540
MS.gene009479.t1 MTR_2g031460 55.800 500 197 9 1 485 34 524 0.0 538
MS.gene009479.t1 MTR_4g094492 54.617 509 208 8 1 490 34 538 0.0 532
MS.gene009479.t1 MTR_4g094495 54.365 504 210 6 1 486 37 538 0.0 531
MS.gene009479.t1 MTR_4g094478 52.778 504 220 6 1 488 34 535 0.0 528
MS.gene009479.t1 MTR_4g094518 54.563 504 208 9 1 488 32 530 0.0 525
MS.gene009479.t1 MTR_4g094520 52.599 481 212 6 22 488 54 532 1.22e-179 514
MS.gene009479.t1 MTR_4g094418 56.881 436 170 5 72 489 1 436 1.40e-179 517
MS.gene009479.t1 MTR_4g094498 51.503 499 229 5 2 490 41 536 8.27e-179 513
MS.gene009479.t1 MTR_4g094480 51.195 502 227 7 1 486 34 533 1.03e-178 512
MS.gene009479.t1 MTR_2g031560 48.902 501 240 6 1 488 26 523 6.42e-177 509
MS.gene009479.t1 MTR_2g031590 50.204 490 218 8 23 488 45 532 3.18e-171 493
MS.gene009479.t1 MTR_2g031510 46.748 492 242 7 14 488 52 540 2.77e-157 458
MS.gene009479.t1 MTR_2g031490 46.107 488 245 6 17 488 53 538 1.67e-154 451
MS.gene009479.t1 MTR_4g091200 47.737 486 237 7 15 486 42 524 9.10e-154 448
MS.gene009479.t1 MTR_4g088355 46.813 502 246 7 9 490 35 535 1.37e-153 448
MS.gene009479.t1 MTR_4g057990 45.766 496 258 4 1 486 26 520 7.65e-153 446
MS.gene009479.t1 MTR_4g091150 47.525 505 244 10 1 488 40 540 8.07e-152 444
MS.gene009479.t1 MTR_4g091190 45.759 507 245 9 1 486 29 526 8.44e-151 441
MS.gene009479.t1 MTR_3g009850 87.931 232 28 0 261 492 1 232 1.67e-150 429
MS.gene009479.t1 MTR_6g017205 46.232 491 247 7 10 486 37 524 4.29e-149 437
MS.gene009479.t1 MTR_4g094515 48.008 477 232 6 28 490 678 1152 1.26e-148 454
MS.gene009479.t1 MTR_4g094515 45.941 505 247 10 1 486 41 538 4.08e-145 445
MS.gene009479.t1 MTR_4g091170 46.460 452 212 6 47 486 107 540 2.00e-145 429
MS.gene009479.t1 MTR_2g023590 46.087 460 232 6 44 490 12 468 5.89e-139 409
MS.gene009479.t1 MTR_1g076830 42.105 475 256 8 28 485 60 532 2.10e-121 366
MS.gene009479.t1 MTR_2g031600 51.256 199 82 3 23 206 46 244 1.56e-59 201
MS.gene009479.t1 MTR_2g031600 53.165 158 71 2 332 488 245 400 1.18e-51 181
MS.gene009479.t1 MTR_2g084370 73.786 103 13 1 96 198 1 89 1.57e-45 154
MS.gene009479.t1 MTR_2g084405 76.471 85 10 2 96 170 1 85 2.65e-29 111
MS.gene009479.t1 MTR_8g062280 33.333 105 39 4 388 492 4 77 7.20e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009479.t1 AT4G20860 59.560 455 172 5 44 488 77 529 0.0 556
MS.gene009479.t1 AT5G44360 53.922 510 200 12 1 488 50 546 0.0 533
MS.gene009479.t1 AT5G44360 53.922 510 200 12 1 488 34 530 0.0 532
MS.gene009479.t1 AT5G44400 55.441 487 199 10 16 486 50 534 0.0 527
MS.gene009479.t1 AT1G30760 52.965 489 207 8 13 486 68 548 4.81e-179 514
MS.gene009479.t1 AT1G30760 52.965 489 207 8 13 486 50 530 5.62e-179 513
MS.gene009479.t1 AT2G34790 52.083 480 209 7 22 486 55 528 3.80e-177 508
MS.gene009479.t1 AT5G44390 54.375 480 198 11 27 488 64 540 1.08e-175 505
MS.gene009479.t1 AT5G44440 48.536 478 224 9 31 491 60 532 4.83e-162 470
MS.gene009479.t1 AT5G44440 48.536 478 224 9 31 491 130 602 6.15e-161 469
MS.gene009479.t1 AT5G44380 51.335 487 219 10 16 486 53 537 2.46e-159 463
MS.gene009479.t1 AT5G44380 51.335 487 219 10 16 486 93 577 3.61e-159 464
MS.gene009479.t1 AT1G26420 48.479 493 233 7 11 486 35 523 1.85e-158 460
MS.gene009479.t1 AT4G20820 48.085 470 225 8 28 486 63 524 8.41e-158 459
MS.gene009479.t1 AT1G26410 48.745 478 226 7 22 486 76 547 1.01e-154 452
MS.gene009479.t1 AT1G26380 48.347 484 235 5 17 488 45 525 1.49e-154 451
MS.gene009479.t1 AT1G26390 48.434 479 228 7 22 486 52 525 5.36e-154 449
MS.gene009479.t1 AT5G44410 48.008 477 224 9 28 488 61 529 3.91e-151 442
MS.gene009479.t1 AT1G26400 47.035 489 243 7 9 485 37 521 3.09e-150 439
MS.gene009479.t1 AT1G30700 47.379 477 231 8 28 488 54 526 6.66e-147 431
MS.gene009479.t1 AT1G30710 43.564 505 261 9 2 490 34 530 1.20e-146 430
MS.gene009479.t1 AT1G34575 43.083 506 252 11 2 487 34 523 1.69e-145 427
MS.gene009479.t1 AT1G11770 42.460 504 275 7 1 492 33 533 1.83e-143 422
MS.gene009479.t1 AT4G20800 46.709 471 235 6 34 491 61 528 3.84e-143 421
MS.gene009479.t1 AT1G01980 43.836 511 263 10 1 492 33 538 1.45e-142 420
MS.gene009479.t1 AT1G30730 44.800 500 259 7 1 487 29 524 7.60e-142 418
MS.gene009479.t1 AT4G20840 42.829 502 268 8 1 488 39 535 1.68e-141 417
MS.gene009479.t1 AT4G20830 44.748 476 247 7 28 490 66 538 6.01e-138 408
MS.gene009479.t1 AT4G20830 44.726 474 246 7 28 488 66 536 4.93e-137 407
MS.gene009479.t1 AT1G30740 43.227 502 268 8 1 488 33 531 5.69e-135 400
MS.gene009479.t1 AT1G30740 43.227 502 268 8 1 488 30 528 5.90e-135 400
MS.gene009479.t1 AT2G34810 42.574 505 272 7 1 488 36 539 1.16e-134 400
MS.gene009479.t1 AT1G30720 43.129 473 253 6 28 487 56 525 1.92e-133 396

Find 91 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGGGCATCAAGTACTTTA+AGG 0.182488 3.2:+3808861 MS.gene009479:CDS
AAGCTGGTTTAGAAGGTATT+TGG 0.194170 3.2:+3808527 MS.gene009479:CDS
GCTCACCTTATAGATGTAAA+TGG 0.201621 3.2:+3807998 MS.gene009479:CDS
AATGAGAGTTTCCCTGAATT+AGG 0.214946 3.2:+3808343 MS.gene009479:CDS
CACATTAGCATTACTTATAA+TGG 0.248787 3.2:+3808570 MS.gene009479:CDS
TTGTCTTGCAACCCTAATTC+AGG 0.255332 3.2:-3808355 None:intergenic
CATCCACTTTATATGCTTGT+TGG 0.273212 3.2:-3808713 None:intergenic
CGATGAATCTGCTTGGATTC+AGG 0.282488 3.2:+3807127 MS.gene009479:CDS
GGAGGTAGTGCTACTAGTTT+TGG 0.283804 3.2:+3808073 MS.gene009479:CDS
AAGTGGATGAGAATGCTTTA+TGG 0.287403 3.2:+3808727 MS.gene009479:CDS
GAGCTGCATATTACAACTAT+AGG 0.298398 3.2:+3808782 MS.gene009479:CDS
CTGCTTGAATTTCTGATTCA+TGG 0.298655 3.2:-3806962 None:intergenic
CTATTCAGCAAGAGTTCTAT+AGG 0.301114 3.2:-3808442 None:intergenic
CTTGATGAATTCAGCCATCT+TGG 0.311842 3.2:-3806912 None:intergenic
CAACACTTGTGGATACAATA+TGG 0.341661 3.2:-3806871 None:intergenic
ATGAGAGTTTCCCTGAATTA+GGG 0.357011 3.2:+3808344 MS.gene009479:CDS
CACATCAGTGGAGGTGGCTT+TGG 0.360702 3.2:+3807929 MS.gene009479:CDS
TCTAAAGCAAGTAAAGTTCA+TGG 0.367121 3.2:+3807185 MS.gene009479:CDS
GGTACTCAGAAGCAAGTGTT+TGG 0.380263 3.2:+3808842 MS.gene009479:CDS
ATTCAGGCTGGTGCAACATT+AGG 0.380469 3.2:+3807143 MS.gene009479:CDS
TCTAAACCAGCTTCTGGTAT+AGG 0.388016 3.2:-3808517 None:intergenic
TTACTTATAATGGAACCTTA+TGG 0.388867 3.2:+3808580 MS.gene009479:CDS
TTGTTCCAATGTTCTTTGAA+TGG 0.398919 3.2:-3808155 None:intergenic
TGGGGCATCAAGTACTTTAA+GGG 0.402731 3.2:+3808862 MS.gene009479:CDS
ATACCTTCTAAACCAGCTTC+TGG 0.406374 3.2:-3808523 None:intergenic
ATACCAGAAGCTGGTTTAGA+AGG 0.411336 3.2:+3808520 MS.gene009479:CDS
CTTGGAGACTTTGAAACATA+AGG 0.412215 3.2:-3808760 None:intergenic
CTTGTACAACATACAATATA+TGG 0.415255 3.2:+3808660 MS.gene009479:CDS
AGCTGCATATTACAACTATA+GGG 0.426482 3.2:+3808783 MS.gene009479:CDS
GTACTCAGAAGCAAGTGTTT+GGG 0.433402 3.2:+3808843 MS.gene009479:CDS
GATGAGATCAATCATGATAA+AGG 0.434881 3.2:-3807075 None:intergenic
TCATTCAGTCTTCCACCATA+AGG 0.436662 3.2:-3808595 None:intergenic
TGGAGGTGGCTTTGGTACCT+TGG 0.438981 3.2:+3807937 MS.gene009479:CDS
AAGTTTAACTCTCTCTTCCT+TGG 0.446047 3.2:+3808292 MS.gene009479:CDS
CTATGTATTGCCACCTATGA+AGG 0.446403 3.2:-3808192 None:intergenic
AGAATAGTTGCTCAAAATAG+TGG 0.457619 3.2:+3808244 MS.gene009479:CDS
TCATTCTTGCATGGAAGATA+AGG 0.459271 3.2:+3808098 MS.gene009479:CDS
CTCACCTTATAGATGTAAAT+GGG 0.461407 3.2:+3807999 MS.gene009479:CDS
AATTCTTGATAGAAAATCAA+TGG 0.470027 3.2:+3808024 MS.gene009479:CDS
TAAGGGAAACTTTAAGCGAT+TGG 0.470910 3.2:+3808879 MS.gene009479:CDS
AACTATAGGGATCTTGATAT+AGG 0.475447 3.2:+3808796 MS.gene009479:CDS
TGTCTTGCAACCCTAATTCA+GGG 0.475992 3.2:-3808354 None:intergenic
AAGACTGCATTGAAATGAGT+TGG 0.478707 3.2:+3808377 MS.gene009479:CDS
ATGAGATCAATCATGATAAA+GGG 0.478729 3.2:-3807074 None:intergenic
TAAGTTGTTAATTCAGGGGA+GGG 0.480193 3.2:-3808971 None:intergenic
TATTCAGCAAGAGTTCTATA+GGG 0.484064 3.2:-3808441 None:intergenic
ATCTTGCCGATGAATCTGCT+TGG 0.489037 3.2:+3807120 MS.gene009479:CDS
GAGCAACCAAGGTCCTTCAT+AGG 0.491433 3.2:+3808179 MS.gene009479:CDS
TTCAGAAAAGCTACTACCTA+TGG 0.493468 3.2:-3806814 None:intergenic
TTCAGTGATTCCAACACTTG+TGG 0.498638 3.2:-3806882 None:intergenic
TGCTTGAATTTCTGATTCAT+GGG 0.498893 3.2:-3806961 None:intergenic
AAGACAGTCCTTCATAATCA+TGG 0.503011 3.2:-3807037 None:intergenic
TAGTTGTAATATGCAGCTCT+TGG 0.503584 3.2:-3808778 None:intergenic
AATCCAACAAGCATATAAAG+TGG 0.509234 3.2:+3808710 MS.gene009479:CDS
ATTCTTGATAGAAAATCAAT+GGG 0.522100 3.2:+3808025 MS.gene009479:CDS
CATATTGTATCCACAAGTGT+TGG 0.531440 3.2:+3806872 MS.gene009479:CDS
GTGGCTTTGGTACCTTGGTA+AGG 0.531498 3.2:+3807942 MS.gene009479:CDS
AAAGTTCATGGATTCCCTGC+AGG 0.538278 3.2:+3807197 MS.gene009479:CDS
ATGGTGAATACTGTAACAAT+AGG 0.540272 3.2:-3808136 None:intergenic
TCTTGCATGGAAGATAAGGT+TGG 0.542256 3.2:+3808102 MS.gene009479:CDS
ATGCAGTGCATGTTAACCAT+AGG 0.544066 3.2:+3806798 MS.gene009479:CDS
CACTGAAACAAAATCCAAGA+TGG 0.547598 3.2:+3806898 MS.gene009479:CDS
ATTCACCATTCAAAGAACAT+TGG 0.547935 3.2:+3808150 MS.gene009479:CDS
GGTGGTCACATCAGTGGAGG+TGG 0.552995 3.2:+3807923 MS.gene009479:intron
TGAATTTCTGATTCATGGGA+AGG 0.564377 3.2:-3806957 None:intergenic
ACATACAATATATGGTCAAG+TGG 0.568366 3.2:+3808668 MS.gene009479:CDS
GTGCAGATTAGAGTGGTTAG+TGG 0.572020 3.2:+3807011 MS.gene009479:CDS
AAAGTGCCTATACCAGAAGC+TGG 0.574390 3.2:+3808511 MS.gene009479:CDS
CTGAATCCAAGCAGATTCAT+CGG 0.574804 3.2:-3807126 None:intergenic
GAATCTGCTTGGATTCAGGC+TGG 0.577913 3.2:+3807131 MS.gene009479:CDS
TTAAGTTGTTAATTCAGGGG+AGG 0.578715 3.2:-3808972 None:intergenic
AAGGAAGAGAGAGTTAAACT+TGG 0.579262 3.2:-3808290 None:intergenic
GGTACCTTGGTAAGGAAACA+TGG 0.585139 3.2:+3807950 MS.gene009479:CDS
GTGAATACTGTAACAATAGG+TGG 0.587206 3.2:-3808133 None:intergenic
AGTGGTGGCCATGATTATGA+AGG 0.592283 3.2:+3807029 MS.gene009479:CDS
CTTATAATGGAACCTTATGG+TGG 0.592307 3.2:+3808583 MS.gene009479:CDS
GATTGGTGTGCAGATTAGAG+TGG 0.599674 3.2:+3807004 MS.gene009479:CDS
CATACAATATATGGTCAAGT+GGG 0.600319 3.2:+3808669 MS.gene009479:CDS
TACTCAGAAGCAAGTGTTTG+GGG 0.603811 3.2:+3808844 MS.gene009479:CDS
GGAGTAGGTGGTCACATCAG+TGG 0.610281 3.2:+3807917 MS.gene009479:intron
TTGCCACCTATGAAGGACCT+TGG 0.622093 3.2:-3808185 None:intergenic
CAAGATTAATGTCGATCGAA+CGG 0.627262 3.2:-3807103 None:intergenic
CAACCAAGGTCCTTCATAGG+TGG 0.629693 3.2:+3808182 MS.gene009479:CDS
GCTCAAACTAATTACCTGCA+GGG 0.638432 3.2:-3807211 None:intergenic
ATTGGAACAAGGAGCAACCA+AGG 0.639041 3.2:+3808168 MS.gene009479:CDS
CAGGGGAGGGAATTCAGAAG+AGG 0.643159 3.2:-3808958 None:intergenic
GAAGGTGTCATAATGAGAAG+AGG 0.648177 3.2:-3806939 None:intergenic
TAGACCATGTTTCCTTACCA+AGG 0.652475 3.2:-3807954 None:intergenic
GTAGGTGGTCACATCAGTGG+AGG 0.669019 3.2:+3807920 MS.gene009479:intron
CAGATTAGAGTGGTTAGTGG+TGG 0.684127 3.2:+3807014 MS.gene009479:CDS
ATTCAAAGAACATTGGAACA+AGG 0.701106 3.2:+3808157 MS.gene009479:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAACTATAACAAA+CGG + chr3.2:3807710-3807729 MS.gene009479:intron 10.0%
!! TTAATTTAATATGTAACAAA+CGG - chr3.2:3807436-3807455 None:intergenic 10.0%
!!! TCATAATAATTTAGTTTTTT+TGG + chr3.2:3807538-3807557 MS.gene009479:intron 10.0%
!! TTAAAAAAAAAAAAAACCGT+TGG - chr3.2:3807804-3807823 None:intergenic 15.0%
!!! AAAAATTGATTTTTTGTTTG+AGG - chr3.2:3807631-3807650 None:intergenic 15.0%
!!! TTTTCTTAAAAAATAACCAA+CGG + chr3.2:3807785-3807804 MS.gene009479:intron 15.0%
!! AATTCTTGATAGAAAATCAA+TGG + chr3.2:3808024-3808043 MS.gene009479:CDS 20.0%
!! ATTCTTGATAGAAAATCAAT+GGG + chr3.2:3808025-3808044 MS.gene009479:CDS 20.0%
!!! ATCTAGTTTTGACTTTATTT+TGG + chr3.2:3807409-3807428 MS.gene009479:intron 20.0%
! ATGAGATCAATCATGATAAA+GGG - chr3.2:3807077-3807096 None:intergenic 25.0%
! ATTAAATTGCTTATCCAAAC+AGG + chr3.2:3807878-3807897 MS.gene009479:intron 25.0%
! CACATTAGCATTACTTATAA+TGG + chr3.2:3808570-3808589 MS.gene009479:CDS 25.0%
! CTTGTACAACATACAATATA+TGG + chr3.2:3808660-3808679 MS.gene009479:CDS 25.0%
!! TTAAGTTATCTTTTTCTCCA+AGG - chr3.2:3808312-3808331 None:intergenic 25.0%
!! TTACTTATAATGGAACCTTA+TGG + chr3.2:3808580-3808599 MS.gene009479:CDS 25.0%
!! TTTTCCCATTTACATCTATA+AGG - chr3.2:3808006-3808025 None:intergenic 25.0%
AACTATAGGGATCTTGATAT+AGG + chr3.2:3808796-3808815 MS.gene009479:CDS 30.0%
AATCCAACAAGCATATAAAG+TGG + chr3.2:3808710-3808729 MS.gene009479:CDS 30.0%
ACATACAATATATGGTCAAG+TGG + chr3.2:3808668-3808687 MS.gene009479:CDS 30.0%
AGAATAGTTGCTCAAAATAG+TGG + chr3.2:3808244-3808263 MS.gene009479:CDS 30.0%
AGCTGCATATTACAACTATA+GGG + chr3.2:3808783-3808802 MS.gene009479:CDS 30.0%
ATACTATGCAGCAAAAAGAT+TGG + chr3.2:3806987-3807006 MS.gene009479:CDS 30.0%
ATGGTGAATACTGTAACAAT+AGG - chr3.2:3808139-3808158 None:intergenic 30.0%
ATTCAAAGAACATTGGAACA+AGG + chr3.2:3808157-3808176 MS.gene009479:CDS 30.0%
ATTCACCATTCAAAGAACAT+TGG + chr3.2:3808150-3808169 MS.gene009479:CDS 30.0%
CATACAATATATGGTCAAGT+GGG + chr3.2:3808669-3808688 MS.gene009479:CDS 30.0%
CTCACCTTATAGATGTAAAT+GGG + chr3.2:3807999-3808018 MS.gene009479:CDS 30.0%
GATGAGATCAATCATGATAA+AGG - chr3.2:3807078-3807097 None:intergenic 30.0%
TATTCAGCAAGAGTTCTATA+GGG - chr3.2:3808444-3808463 None:intergenic 30.0%
TGCTTGAATTTCTGATTCAT+GGG - chr3.2:3806964-3806983 None:intergenic 30.0%
TTGTTCCAATGTTCTTTGAA+TGG - chr3.2:3808158-3808177 None:intergenic 30.0%
! AATCTTTTTGCTGCATAGTA+TGG - chr3.2:3806988-3807007 None:intergenic 30.0%
! CACTTTTACATAGTCAGATT+TGG - chr3.2:3808497-3808516 None:intergenic 30.0%
! CTCATTCCTGAAAAAGTTTT+GGG - chr3.2:3808929-3808948 None:intergenic 30.0%
! GCAAAAAGTATGACAATACA+AGG + chr3.2:3808821-3808840 MS.gene009479:CDS 30.0%
! TACAAGTTTCCTTTTCTATG+TGG - chr3.2:3808646-3808665 None:intergenic 30.0%
! TCATTCCTGAAAAAGTTTTG+GGG - chr3.2:3808928-3808947 None:intergenic 30.0%
! TCTAAAGCAAGTAAAGTTCA+TGG + chr3.2:3807185-3807204 MS.gene009479:CDS 30.0%
! TTCCTTTTCTATGTGGAAAA+GGG - chr3.2:3808639-3808658 None:intergenic 30.0%
! TTTCCTTTTCTATGTGGAAA+AGG - chr3.2:3808640-3808659 None:intergenic 30.0%
!! ACTTATTTCTATAAGCTCTC+TGG + chr3.2:3807354-3807373 MS.gene009479:intron 30.0%
!! CAATCAGTTTTGTATTTTGC+AGG + chr3.2:3808403-3808422 MS.gene009479:CDS 30.0%
!!! AATGGGAGAAGATGTTTTTT+GGG + chr3.2:3808042-3808061 MS.gene009479:CDS 30.0%
AAGACAGTCCTTCATAATCA+TGG - chr3.2:3807040-3807059 None:intergenic 35.0%
AAGACTGCATTGAAATGAGT+TGG + chr3.2:3808377-3808396 MS.gene009479:CDS 35.0%
AAGGAAGAGAGAGTTAAACT+TGG - chr3.2:3808293-3808312 None:intergenic 35.0%
AAGTGGATGAGAATGCTTTA+TGG + chr3.2:3808727-3808746 MS.gene009479:CDS 35.0%
AAGTTTAACTCTCTCTTCCT+TGG + chr3.2:3808292-3808311 MS.gene009479:CDS 35.0%
AATGAGAGTTTCCCTGAATT+AGG + chr3.2:3808343-3808362 MS.gene009479:CDS 35.0%
ATGAGAGTTTCCCTGAATTA+GGG + chr3.2:3808344-3808363 MS.gene009479:CDS 35.0%
CAACACTTGTGGATACAATA+TGG - chr3.2:3806874-3806893 None:intergenic 35.0%
CAAGATTAATGTCGATCGAA+CGG - chr3.2:3807106-3807125 None:intergenic 35.0%
CACTGAAACAAAATCCAAGA+TGG + chr3.2:3806898-3806917 MS.gene009479:CDS 35.0%
CATATTGTATCCACAAGTGT+TGG + chr3.2:3806872-3806891 MS.gene009479:CDS 35.0%
CATCCACTTTATATGCTTGT+TGG - chr3.2:3808716-3808735 None:intergenic 35.0%
CTATTCAGCAAGAGTTCTAT+AGG - chr3.2:3808445-3808464 None:intergenic 35.0%
CTGCTTGAATTTCTGATTCA+TGG - chr3.2:3806965-3806984 None:intergenic 35.0%
GAGCTGCATATTACAACTAT+AGG + chr3.2:3808782-3808801 MS.gene009479:CDS 35.0%
GCTCACCTTATAGATGTAAA+TGG + chr3.2:3807998-3808017 MS.gene009479:CDS 35.0%
GTGAATACTGTAACAATAGG+TGG - chr3.2:3808136-3808155 None:intergenic 35.0%
TAAGGGAAACTTTAAGCGAT+TGG + chr3.2:3808879-3808898 MS.gene009479:CDS 35.0%
TAGTTGTAATATGCAGCTCT+TGG - chr3.2:3808781-3808800 None:intergenic 35.0%
TCATTCTTGCATGGAAGATA+AGG + chr3.2:3808098-3808117 MS.gene009479:CDS 35.0%
TGAATTTCTGATTCATGGGA+AGG - chr3.2:3806960-3806979 None:intergenic 35.0%
TTCAGAAAAGCTACTACCTA+TGG - chr3.2:3806817-3806836 None:intergenic 35.0%
! ATCCCTTTTCCACATAGAAA+AGG + chr3.2:3808634-3808653 MS.gene009479:CDS 35.0%
! CTTATAATGGAACCTTATGG+TGG + chr3.2:3808583-3808602 MS.gene009479:CDS 35.0%
! GATAAACACTGTGTTTTCAC+TGG - chr3.2:3806841-3806860 None:intergenic 35.0%
! GCTCATTCCTGAAAAAGTTT+TGG - chr3.2:3808930-3808949 None:intergenic 35.0%
!! AAGCTGGTTTAGAAGGTATT+TGG + chr3.2:3808527-3808546 MS.gene009479:CDS 35.0%
!! CTTGGAGACTTTGAAACATA+AGG - chr3.2:3808763-3808782 None:intergenic 35.0%
!! TTGATCCCCAAAACTTTTTC+AGG + chr3.2:3808920-3808939 MS.gene009479:CDS 35.0%
!!! CAATGGGAGAAGATGTTTTT+TGG + chr3.2:3808041-3808060 MS.gene009479:CDS 35.0%
!!! GATGTTTTTTGGGCTATTAG+AGG + chr3.2:3808052-3808071 MS.gene009479:CDS 35.0%
!!! GTTTTGGAATCATTCTTGCA+TGG + chr3.2:3808089-3808108 MS.gene009479:CDS 35.0%
ACAGGTATATGTCCAAGTGT+TGG + chr3.2:3807896-3807915 MS.gene009479:intron 40.0%
AGCTCAAACTAATTACCTGC+AGG - chr3.2:3807215-3807234 None:intergenic 40.0%
ATACCTTCTAAACCAGCTTC+TGG - chr3.2:3808526-3808545 None:intergenic 40.0%
ATGCAGTGCATGTTAACCAT+AGG + chr3.2:3806798-3806817 MS.gene009479:CDS 40.0%
CACTTGGACATATACCTGTT+TGG - chr3.2:3807895-3807914 None:intergenic 40.0%
CTATGTATTGCCACCTATGA+AGG - chr3.2:3808195-3808214 None:intergenic 40.0%
CTGAATCCAAGCAGATTCAT+CGG - chr3.2:3807129-3807148 None:intergenic 40.0%
CTTGATGAATTCAGCCATCT+TGG - chr3.2:3806915-3806934 None:intergenic 40.0%
GCTCAAACTAATTACCTGCA+GGG - chr3.2:3807214-3807233 None:intergenic 40.0%
GTACTCAGAAGCAAGTGTTT+GGG + chr3.2:3808843-3808862 MS.gene009479:CDS 40.0%
TACTCAGAAGCAAGTGTTTG+GGG + chr3.2:3808844-3808863 MS.gene009479:CDS 40.0%
TAGACCATGTTTCCTTACCA+AGG - chr3.2:3807957-3807976 None:intergenic 40.0%
TCATTCAGTCTTCCACCATA+AGG - chr3.2:3808598-3808617 None:intergenic 40.0%
TCTAAACCAGCTTCTGGTAT+AGG - chr3.2:3808520-3808539 None:intergenic 40.0%
TCTTGCATGGAAGATAAGGT+TGG + chr3.2:3808102-3808121 MS.gene009479:CDS 40.0%
TGTCTTGCAACCCTAATTCA+GGG - chr3.2:3808357-3808376 None:intergenic 40.0%
TTCAGTGATTCCAACACTTG+TGG - chr3.2:3806885-3806904 None:intergenic 40.0%
TTGTCTTGCAACCCTAATTC+AGG - chr3.2:3808358-3808377 None:intergenic 40.0%
! ATACCAGAAGCTGGTTTAGA+AGG + chr3.2:3808520-3808539 MS.gene009479:CDS 40.0%
! TGGGGCATCAAGTACTTTAA+GGG + chr3.2:3808862-3808881 MS.gene009479:CDS 40.0%
! TTGGGGCATCAAGTACTTTA+AGG + chr3.2:3808861-3808880 MS.gene009479:CDS 40.0%
!! ATATGTCCAAGTGTTGGAGT+AGG + chr3.2:3807902-3807921 MS.gene009479:intron 40.0%
!! GAAGGTGTCATAATGAGAAG+AGG - chr3.2:3806942-3806961 None:intergenic 40.0%
!!! GGCTTTGAATGAGCTTTTGA+AGG - chr3.2:3808476-3808495 None:intergenic 40.0%
!!! GTTTTTTGGGCTATTAGAGG+AGG + chr3.2:3808055-3808074 MS.gene009479:CDS 40.0%
AAAGTTCATGGATTCCCTGC+AGG + chr3.2:3807197-3807216 MS.gene009479:CDS 45.0%
AGTGGTGGCCATGATTATGA+AGG + chr3.2:3807029-3807048 MS.gene009479:CDS 45.0%
ATCTTGCCGATGAATCTGCT+TGG + chr3.2:3807120-3807139 MS.gene009479:CDS 45.0%
ATTCAGGCTGGTGCAACATT+AGG + chr3.2:3807143-3807162 MS.gene009479:CDS 45.0%
ATTGGAACAAGGAGCAACCA+AGG + chr3.2:3808168-3808187 MS.gene009479:CDS 45.0%
CAGATTAGAGTGGTTAGTGG+TGG + chr3.2:3807014-3807033 MS.gene009479:CDS 45.0%
CGATGAATCTGCTTGGATTC+AGG + chr3.2:3807127-3807146 MS.gene009479:CDS 45.0%
GATTGGTGTGCAGATTAGAG+TGG + chr3.2:3807004-3807023 MS.gene009479:CDS 45.0%
GGTACCTTGGTAAGGAAACA+TGG + chr3.2:3807950-3807969 MS.gene009479:CDS 45.0%
GGTACTCAGAAGCAAGTGTT+TGG + chr3.2:3808842-3808861 MS.gene009479:CDS 45.0%
GTGCAGATTAGAGTGGTTAG+TGG + chr3.2:3807011-3807030 MS.gene009479:CDS 45.0%
! AAAGTGCCTATACCAGAAGC+TGG + chr3.2:3808511-3808530 MS.gene009479:CDS 45.0%
!! GGAGGTAGTGCTACTAGTTT+TGG + chr3.2:3808073-3808092 MS.gene009479:CDS 45.0%
CAACCAAGGTCCTTCATAGG+TGG + chr3.2:3808182-3808201 MS.gene009479:CDS 50.0%
GAATCTGCTTGGATTCAGGC+TGG + chr3.2:3807131-3807150 MS.gene009479:CDS 50.0%
GAGCAACCAAGGTCCTTCAT+AGG + chr3.2:3808179-3808198 MS.gene009479:CDS 50.0%
TGACCACCTACTCCAACACT+TGG - chr3.2:3807911-3807930 None:intergenic 50.0%
TTGCCACCTATGAAGGACCT+TGG - chr3.2:3808188-3808207 None:intergenic 50.0%
!! GTGGCTTTGGTACCTTGGTA+AGG + chr3.2:3807942-3807961 MS.gene009479:CDS 50.0%
!! TGTCCAAGTGTTGGAGTAGG+TGG + chr3.2:3807905-3807924 MS.gene009479:intron 50.0%
CACATCAGTGGAGGTGGCTT+TGG + chr3.2:3807929-3807948 MS.gene009479:CDS 55.0%
CAGGGGAGGGAATTCAGAAG+AGG - chr3.2:3808961-3808980 None:intergenic 55.0%
GGAGTAGGTGGTCACATCAG+TGG + chr3.2:3807917-3807936 MS.gene009479:intron 55.0%
GTAGGTGGTCACATCAGTGG+AGG + chr3.2:3807920-3807939 MS.gene009479:intron 55.0%
!! TGGAGGTGGCTTTGGTACCT+TGG + chr3.2:3807937-3807956 MS.gene009479:CDS 55.0%
GGTGGTCACATCAGTGGAGG+TGG + chr3.2:3807923-3807942 MS.gene009479:intron 60.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 3806798 3808981 3806798 ID=MS.gene009479
chr3.2 mRNA 3806798 3808981 3806798 ID=MS.gene009479.t1;Parent=MS.gene009479
chr3.2 exon 3806798 3807218 3806798 ID=MS.gene009479.t1.exon1;Parent=MS.gene009479.t1
chr3.2 CDS 3806798 3807218 3806798 ID=cds.MS.gene009479.t1;Parent=MS.gene009479.t1
chr3.2 exon 3807924 3808981 3807924 ID=MS.gene009479.t1.exon2;Parent=MS.gene009479.t1
chr3.2 CDS 3807924 3808981 3807924 ID=cds.MS.gene009479.t1;Parent=MS.gene009479.t1
Gene Sequence

>MS.gene009479

ATGCAGTGCATGTTAACCATAGGTAGTAGCTTTTCTGAATCCAGTGAAAACACAGTGTTTATCAACTCATCATCCATATTGTATCCACAAGTGTTGGAATCACTGAAACAAAATCCAAGATGGCTGAATTCATCAAGCAAGCCTCTTCTCATTATGACACCTTCCCATGAATCAGAAATTCAAGCAGCCATACTATGCAGCAAAAAGATTGGTGTGCAGATTAGAGTGGTTAGTGGTGGCCATGATTATGAAGGACTGTCTTATCTTTGTAAGACACCCTTTATCATGATTGATCTCATCAACATCCGTTCGATCGACATTAATCTTGCCGATGAATCTGCTTGGATTCAGGCTGGTGCAACATTAGGTGAACTTTACTATAAAATCTCTAAAGCAAGTAAAGTTCATGGATTCCCTGCAGGTAATTAGTTTGAGCTTATCTATTTTTTATTTTTTTATTTTTAAAGAAGTTTGAGCTTATCTATTATTATAAGCACTTGAGAGATTATTTGAGAGTTTATGAAAAAACTTATGACATGCTCATAAGTTGTTTTCAACTTATTTCTATAAGCTCTCTGGTTAGATTATGAAACAATTTCGAGCTTATAAAAATCTAGTTTTGACTTTATTTTGGTCCGTTTGTTACATATTAAATTAAATGTAATTTTGACATTTAATAATTTAAAATTATTTTTTAAAGATTTTATAAAAAAAAATCAGAATATATTTGTGTTTGTTAATCATAATAATTTAGTTTTTTTGGATACAACTATACAAAATTTTTTTTTTGTTACAAAATAACATCAATCTTTTGACATTTATTTTTCTCTCCTCAAACAAAAAATCAATTTTTAAGAAACTACTCTTAACAACTTATCATTTGAAGCTGTTTTTGAATTTAGATTTTTTCTTAAAAAAAAAACTATAACAAACGGATGCATGCTCTTAAAAGCGATTATAATTTTCTTTTTTATAAAAAGTGATTTTTTTTCTTAAAAAATAACCAACGGTTTTTTTTTTTTTTAATCTTTCGTTGTAAAAATAACTATAATGCATAAACATTTCTATGACAAGTGATTAATTAAATTGCTTATCCAAACAGGTATATGTCCAAGTGTTGGAGTAGGTGGTCACATCAGTGGAGGTGGCTTTGGTACCTTGGTAAGGAAACATGGTCTAGCAGCAGATCATGTTGTTGATGCTCACCTTATAGATGTAAATGGGAAAATTCTTGATAGAAAATCAATGGGAGAAGATGTTTTTTGGGCTATTAGAGGAGGTAGTGCTACTAGTTTTGGAATCATTCTTGCATGGAAGATAAGGTTGGTTAGAGTTCCACCTATTGTTACAGTATTCACCATTCAAAGAACATTGGAACAAGGAGCAACCAAGGTCCTTCATAGGTGGCAATACATAGCAGATAAATTGCATGAAGATCTTTTCATTAGAATAGTTGCTCAAAATAGTGGTGCGAATTCAAAAACAATTCAAACCAAGTTTAACTCTCTCTTCCTTGGAGAAAAAGATAACTTAATCAGAATAATGAATGAGAGTTTCCCTGAATTAGGGTTGCAAGACAAAGACTGCATTGAAATGAGTTGGATTCAATCAGTTTTGTATTTTGCAGGATTCAACAAAGATGACCCTATAGAACTCTTGCTGAATAGAATTGTAACCTTCAAAAGCTCATTCAAAGCCAAATCTGACTATGTAAAAGTGCCTATACCAGAAGCTGGTTTAGAAGGTATTTGGAGAATGCTTCTAAAAGAAGACACATTAGCATTACTTATAATGGAACCTTATGGTGGAAGACTGAATGAAATTTCAGAATCTGAAATCCCTTTTCCACATAGAAAAGGAAACTTGTACAACATACAATATATGGTCAAGTGGGAATTGAATAGTATTGAAGAATCCAACAAGCATATAAAGTGGATGAGAATGCTTTATGGATACATGACTCCTTATGTTTCAAAGTCTCCAAGAGCTGCATATTACAACTATAGGGATCTTGATATAGGTAGCAAAAAGTATGACAATACAAGGTACTCAGAAGCAAGTGTTTGGGGCATCAAGTACTTTAAGGGAAACTTTAAGCGATTGGCACAAATTAAGACAAAATTTGATCCCCAAAACTTTTTCAGGAATGAGCAGAGCATTCCTCTTCTGAATTCCCTCCCCTGA
Protein sequence

>MS.gene009479.t1

MQCMLTIGSSFSESSENTVFINSSSILYPQVLESLKQNPRWLNSSSKPLLIMTPSHESEIQAAILCSKKIGVQIRVVSGGHDYEGLSYLCKTPFIMIDLINIRSIDINLADESAWIQAGATLGELYYKISKASKVHGFPAGGHISGGGFGTLVRKHGLAADHVVDAHLIDVNGKILDRKSMGEDVFWAIRGGSATSFGIILAWKIRLVRVPPIVTVFTIQRTLEQGATKVLHRWQYIADKLHEDLFIRIVAQNSGANSKTIQTKFNSLFLGEKDNLIRIMNESFPELGLQDKDCIEMSWIQSVLYFAGFNKDDPIELLLNRIVTFKSSFKAKSDYVKVPIPEAGLEGIWRMLLKEDTLALLIMEPYGGRLNEISESEIPFPHRKGNLYNIQYMVKWELNSIEESNKHIKWMRMLYGYMTPYVSKSPRAAYYNYRDLDIGSKKYDNTRYSEASVWGIKYFKGNFKRLAQIKTKFDPQNFFRNEQSIPLLNSLP